##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##DRAGENCommandLine=<ID=dragen,Date="Wed Aug 09 18:19:12 PDT 2017",CommandLineOptions=" -r /gpfs/gwngs/data/ngshiseq/ngs-dragen-analysis/dragen-ref/hg19 --output-directory analysis_new/sample_38/ -1 01_trimmed/38_R1_001.fastq.gz -2 01_trimmed/38_R2_001.fastq.gz --output-file-prefix sample_38 --RGID=DRAGEN_RGID --RGSM=DRAGEN_RGSM --RGPL=ILLUMINA --enable-map-align-output=true --enable-bam-compression=true --enable-variant-caller=true --enable-duplicate-marking=true --vc-enable-depth-of-coverage=true --vc-target-bed AgilentHuman_AllExon_V6+UTR/S07604624/S07604624_Padded.bed --vc-depth-intervals-bed AgilentHuman_AllExon_V6+UTR/S07604624/S07604624_Regions.bed --vc-sample-name sample_38">
##DRAGENVersion=<ID=dragen,Version="SW: 01.011.099.02.03.02.32154, HW: 01.011.099">
##FILTER=<ID=DRAGENHardINDEL,Description="Set if true:QD < 2.0 || ReadPosRankSum < -20.0 || FS > 200.0">
##FILTER=<ID=DRAGENHardSNP,Description="Set if true:QD < 2.0 || MQ < 30.0 || FS > 60.0 || MQRankSum < -12.5 || ReadPosRankSum < -8.0">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias.">
##GATKCommandLine.CombineVariants=<ID=CombineVariants,Version=3.7-0-gcfedb67,Date="Tue Aug 22 17:43:57 CEST 2017",Epoch=1503416637991,CommandLineOptions="analysis_type=CombineVariants input_file=[] showFullBamList=false read_buffer_size=null read_filter=[] disable_read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/media/majdi/Transcend/Tools_Majdi/FASTA-data/ucsc.hg19/ucsc.hg19.fa nonDeterministicRandomSeed=false disableDithering=false maxRuntime=-1 maxRuntimeUnits=MINUTES downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=OFF baqGapOpenPenalty=40.0 refactor_NDN_cigar_string=false fix_misencoded_quality_scores=false allow_potentially_misencoded_quality_scores=false useOriginalQualities=false defaultBaseQualities=-1 performanceLog=null BQSR=null quantize_quals=0 static_quantized_quals=null round_down_quantized=false disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 globalQScorePrior=-1.0 secondsBetweenProgressUpdates=10 validation_strictness=SILENT remove_program_records=false keep_program_records=false sample_rename_mapping_file=null unsafe=null disable_auto_index_creation_and_locking_when_reading_rods=false no_cmdline_in_header=false sites_only=false never_trim_vcf_format_field=false bcf=false bam_compression=null simplifyBAM=false disable_bam_indexing=false generate_md5=false num_threads=1 num_cpu_threads_per_data_thread=1 num_io_threads=0 monitorThreadEfficiency=false num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false variant_index_type=DYNAMIC_SEEK variant_index_parameter=-1 reference_window_stop=0 phone_home= gatk_key=null tag=NA logging_level=INFO log_to_file=null help=false version=false variant=[(RodBindingCollection [(RodBinding name=variant source=sample_100.hard-filtered.vcf), (RodBinding name=variant2 source=sample_38.hard-filtered.vcf), (RodBinding name=variant3 source=sample_39.hard-filtered.vcf), (RodBinding name=variant4 source=sample_40.hard-filtered.vcf), (RodBinding name=variant5 source=sample_41.hard-filtered.vcf), (RodBinding name=variant6 source=sample_42.hard-filtered.vcf), (RodBinding name=variant7 source=sample_43.hard-filtered.vcf), (RodBinding name=variant8 source=sample_44.hard-filtered.vcf), (RodBinding name=variant9 source=sample_45.hard-filtered.vcf), (RodBinding name=variant10 source=sample_46.hard-filtered.vcf), (RodBinding name=variant11 source=sample_47.hard-filtered.vcf), (RodBinding name=variant12 source=sample_48.hard-filtered.vcf), (RodBinding name=variant13 source=sample_49.hard-filtered.vcf), (RodBinding name=variant14 source=sample_50.hard-filtered.vcf), (RodBinding name=variant15 source=sample_51.hard-filtered.vcf), (RodBinding name=variant16 source=sample_53.hard-filtered.vcf), (RodBinding name=variant17 source=sample_54.hard-filtered.vcf), (RodBinding name=variant18 source=sample_55.hard-filtered.vcf), (RodBinding name=variant19 source=sample_56.hard-filtered.vcf), (RodBinding name=variant20 source=sample_57.hard-filtered.vcf), (RodBinding name=variant21 source=sample_59.hard-filtered.vcf), (RodBinding name=variant22 source=sample_60.hard-filtered.vcf), (RodBinding name=variant23 source=sample_61.hard-filtered.vcf), (RodBinding name=variant24 source=sample_62.hard-filtered.vcf), (RodBinding name=variant25 source=sample_63.hard-filtered.vcf), (RodBinding name=variant26 source=sample_64.hard-filtered.vcf), (RodBinding name=variant27 source=sample_66.hard-filtered.vcf), (RodBinding name=variant28 source=sample_67.hard-filtered.vcf), (RodBinding name=variant29 source=sample_68.hard-filtered.vcf), (RodBinding name=variant30 source=sample_69.hard-filtered.vcf), (RodBinding name=variant31 source=sample_70.hard-filtered.vcf), (RodBinding name=variant32 source=sample_71.hard-filtered.vcf), (RodBinding name=variant33 source=sample_72.hard-filtered.vcf), (RodBinding name=variant34 source=sample_73.hard-filtered.vcf), (RodBinding name=variant35 source=sample_74.hard-filtered.vcf), (RodBinding name=variant36 source=sample_91.hard-filtered.vcf), (RodBinding name=variant37 source=sample_92.hard-filtered.vcf), (RodBinding name=variant38 source=sample_93.hard-filtered.vcf), (RodBinding name=variant39 source=sample_94.hard-filtered.vcf), (RodBinding name=variant40 source=sample_95.hard-filtered.vcf), (RodBinding name=variant41 source=sample_96.hard-filtered.vcf), (RodBinding name=variant42 source=sample_97.hard-filtered.vcf), (RodBinding name=variant43 source=sample_98.hard-filtered.vcf), (RodBinding name=variant44 source=sample_99.hard-filtered.vcf)])] out=/media/majdi/Transcend/Analyse_Genepred_26072017/Analyse_Brice_2eme_lot/Analyse_SKAT/data/combined.vcf genotypemergeoption=UNIQUIFY filteredrecordsmergetype=KEEP_IF_ANY_UNFILTERED multipleallelesmergetype=BY_TYPE rod_priority_list=null printComplexMerges=false filteredAreUncalled=false minimalVCF=false excludeNonVariants=false setKey=set assumeIdenticalSamples=false minimumN=1 suppressCommandLineHeader=false mergeInfoWithMaxAC=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=FractionInformativeReads,Number=1,Type=Float,Description="The fraction of informative reads out of the total reads">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=set,Number=1,Type=String,Description="Source VCF for the merged record in CombineVariants">
##contig=<ID=chrM,length=16571,assembly=hg19>
##contig=<ID=chr1,length=249250621,assembly=hg19>
##contig=<ID=chr2,length=243199373,assembly=hg19>
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##contig=<ID=chr1_gl000192_random,length=547496,assembly=hg19>
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##contig=<ID=chr19_gl000209_random,length=159169,assembly=hg19>
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##reference=file:///media/majdi/Transcend/Tools_Majdi/FASTA-data/ucsc.hg19/ucsc.hg19.fa
##bcftools_viewVersion=1.2+htslib-1.2.1
##bcftools_viewCommand=view -c 1 -s sample_96.variant41 sample.vcf
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	sample_96.variant41
chr1	13418	.	G	A	656.78	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2825;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:158,44:202:99:566,0,3691:90,68,34,10
chr1	14653	.	C	T	145.02	DRAGENHardSNP	AC=1;AF=0.574;AN=2;DP=565;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:101,0,103:3,1,4,0
chr1	14907	.	A	G	1497.24	PASS	AC=1;AF=0.5;AN=2;DP=11127;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,63:103:99:1383,0,792:15,25,34,29
chr1	14930	.	A	G	2107.21	PASS	AC=1;AF=0.5;AN=2;DP=11281;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,66:97:99:1414,0,562:12,19,32,34
chr1	16825	.	C	A	34.73	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=23.4;MQRankSum=-1.835;QD=2.89;ReadPosRankSum=-0.536;SOR=0.693;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:63:63,0,162:4,4,2,2
chr1	17365	.	C	G	150.81	PASS	AC=1;AF=0.5;AN=2;DP=127;FractionInformativeReads=1;set=variant22-filterInvariant39-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:13,4:17:75:75,0,317:8,5,4,0
chr1	69511	.	A	G	2855.59	PASS	AC=1;AF=0.938;AN=2;DP=5515;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:147,98:245:99:2002,0,3826:70,77,53,45
chr1	139213	.	A	G	725.1	DRAGENHardSNP	AC=1;AF=0.537;AN=2;DP=2258;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:26,28:54:99:1143,0,1296:17,9,16,12
chr1	139233	.	C	A	758.87	DRAGENHardSNP	AC=1;AF=0.537;AN=2;DP=2756;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:39,35:74:99:1170,0,1561:23,16,18,17
chr1	325015	.	C	G	80.58	DRAGENHardSNP	AC=2;AF=0.833;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQRankSum=-0.937;ReadPosRankSum=0.55;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:84,9,0:0,0,0,3
chr1	662029	.	G	A	125.14	DRAGENHardSNP	AC=2;AF=0.966;AN=2;DP=158;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:152,18,0:0,0,1,5
chr1	663097	.	G	C	715.42	DRAGENHardSNP	AC=2;AF=0.925;AN=2;DP=656;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:182,21,0:0,0,5,2
chr1	664435	.	C	A	80.76	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=99;FS=0;FractionInformativeReads=1;MQ=24.07;MQRankSum=0.209;QD=0.82;ReadPosRankSum=0.162;SOR=0.802;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:82,17:99:99:109,0,1804:50,32,11,6
chr1	752894	.	T	C	40.18	PASS	AC=2;AF=0.895;AN=2;DP=268;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,0,3
chr1	761957	.	A	AT	455.32	PASS	AC=1;AF=0.86;AN=2;DP=1319;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,11:35:99:369,0,863:19,5,11,0
chr1	762273	.	G	A	1157.09	PASS	AC=1;AF=0.841;AN=2;DP=5222;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:83,51:134:99:1179,0,2418:39,44,16,35
chr1	762589	.	G	C	556.46	PASS	AC=1;AF=0.852;AN=2;DP=1967;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:438,0,440:3,5,4,7
chr1	762592	.	C	G	556.46	PASS	AC=1;AF=0.852;AN=2;DP=1906;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:438,0,440:3,5,4,7
chr1	762601	.	T	C	556.46	PASS	AC=1;AF=0.852;AN=2;DP=1732;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:441,0,398:3,4,3,7
chr1	762632	.	T	A	137.73	PASS	AC=1;AF=0.852;AN=2;DP=1189;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:199,0,141:3,4,2,5
chr1	792263	.	A	G	276.79	PASS	AC=1;AF=0.898;AN=2;DP=1405;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,8:27:99:244,0,528:15,4,5,3
chr1	792480	.	C	T	3383.51	PASS	AC=1;AF=0.966;AN=2;DP=4598;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,50:91:99:1167,0,1184:17,24,23,27
chr1	804115	.	G	A	411.85	PASS	AC=1;AF=0.953;AN=2;DP=417;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:103,0,235:3,6,1,4
chr1	808631	.	G	A	199.97	PASS	AC=1;AF=0.793;AN=2;DP=1594;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:536,0,407:9,7,13,5
chr1	808922	.	G	A	4382.01	PASS	AC=2;AF=1;AN=2;DP=9647;FS=0;MQRankSum=-0.551;ReadPosRankSum=0.13;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:6938,547,0:0,0,101,81
chr1	808928	.	C	T	1200.84	PASS	AC=1;AF=0.793;AN=2;DP=9235;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,85:185:99:1999,0,2546:58,42,44,41
chr1	861008	.	G	C	590.34	PASS	AC=2;AF=0.943;AN=2;DP=890;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:517,48,0:0,0,11,5
chr1	861630	.	G	A	311.67	PASS	AC=2;AF=0.75;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:354,24,0:0,0,1,7
chr1	865628	.	G	A	1643.98	PASS	AC=1;AF=0.5;AN=2;DP=277;MQ=60;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,58:105:99:1355,0,1109:26,21,30,28
chr1	866319	.	G	A	719.26	PASS	AC=2;AF=1;AN=2;DP=1547;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1062,104,0:0,0,21,14
chr1	866511	.	C	CCCCT	484.32	PASS	AC=2;AF=0.763;AN=2;DP=1003;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:44:615,44,0:0,0,2,13
chr1	871334	.	G	T	646.63	PASS	AC=2;AF=0.784;AN=2;DP=1157;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:894,78,0:0,0,8,18
chr1	876499	.	A	G	1882.55	PASS	AC=2;AF=0.955;AN=2;DP=2368;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1446,135,0:0,0,28,17
chr1	877715	.	C	G	143.34	PASS	AC=2;AF=0.932;AN=2;DP=898;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:514,48,0:0,0,8,8
chr1	877831	.	T	C	439.32	PASS	AC=2;AF=1;AN=2;DP=1128;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:578,51,0:0,0,10,7
chr1	879317	.	C	T	1761.2	PASS	AC=1;AF=0.5;AN=2;DP=1095;MQ=60;set=variant6-variant12-variant14-variant25-variant30-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,59:112:99:1616,0,1520:34,19,35,24
chr1	879676	.	G	A	1408.37	PASS	AC=2;AF=0.943;AN=2;DP=1667;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:987,81,0:0,0,9,18
chr1	879687	.	T	C	1236.05	PASS	AC=2;AF=0.955;AN=2;DP=1367;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:809,69,0:0,0,9,14
chr1	880238	.	A	G	3393.3	PASS	AC=2;AF=0.955;AN=2;DP=4666;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2291,219,0:0,0,38,35
chr1	880390	.	C	A	1356.42	PASS	AC=1;AF=0.5;AN=2;DP=963;MQ=60;set=variant6-variant12-variant14-variant25-variant30-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,46:122:99:1019,0,1981:40,36,23,23
chr1	880639	.	TC	T	188.73	PASS	AC=1;AF=0.595;AN=2;DP=661;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant11-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant27-variant28-variant29-variant33-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:377,0,377:0,12,1,11
chr1	881627	.	G	A	2994.94	PASS	AC=1;AF=0.7;AN=2;DP=3979;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,32:95:99:785,0,1905:41,22,22,10
chr1	883625	.	A	G	4609.89	PASS	AC=2;AF=1;AN=2;DP=6659;FS=0;MQRankSum=1.015;ReadPosRankSum=0.954;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3825,380,0:0,0,61,66
chr1	884091	.	C	G,CACCCTGGTCCCCCTGGTCCCTTTGGCCCTGCACCTGGCTGG	5001.48	PASS	AC=0,2;AF=0.019,0.923;AN=2;DP=3879;set=variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:90:99:0,0,27,63
chr1	886788	.	G	A	2211.72	PASS	AC=1;AF=0.872;AN=2;DP=3233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,26:68:99:616,0,1353:8,34,9,17
chr1	886817	.	C	T,CATTTT	2829.07	PASS	AC=1,1;AF=0.852,0.102;AN=2;DP=2251;MQ=60;set=Intersection	GT:DP:GQ:SB	1/2:36:99:0,0,7,29
chr1	887560	.	A	C	1452.03	PASS	AC=2;AF=0.955;AN=2;DP=6243;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3778,360,0:0,0,65,55
chr1	887801	.	A	G	4434.03	PASS	AC=2;AF=0.966;AN=2;DP=8622;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5816,507,0:0,0,91,78
chr1	888639	.	T	C	4516.36	PASS	AC=2;AF=0.966;AN=2;DP=12259;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,225:225:99:6751,675,0:0,0,118,107
chr1	888659	.	T	C	4816.6	PASS	AC=2;AF=0.966;AN=2;DP=12310;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,225:225:99:6803,675,0:0,0,111,114
chr1	889158	.	G	C	373.04	PASS	AC=2;AF=0.955;AN=2;DP=1550;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:889,60,0:0,0,13,7
chr1	889159	.	A	C	373.04	PASS	AC=2;AF=0.955;AN=2;DP=1561;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:889,60,0:0,0,13,7
chr1	889638	.	G	C	595.76	PASS	AC=2;AF=0.943;AN=2;DP=1606;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1459,129,0:0,0,13,30
chr1	892460	.	G	C	2375.61	PASS	AC=1;AF=0.5;AN=2;DP=1048;MQ=60;set=variant6-variant12-variant14-variant25-variant30-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,41:83:99:1077,0,1102:20,22,18,23
chr1	892745	.	G	A	1918.45	PASS	AC=2;AF=0.966;AN=2;DP=3748;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2096,229,0:0,0,37,40
chr1	894573	.	G	A	2989.22	PASS	AC=1;AF=0.86;AN=2;DP=10960;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,75:177:99:1825,0,2653:38,64,32,43
chr1	896064	.	C	G	987.02	PASS	AC=1;AF=0.5;AN=2;DP=550;FractionInformativeReads=1;MQ=60;set=variant6-variant12-variant14-variant25-variant30-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:498,0,516:7,12,9,11
chr1	897325	.	G	C	2862.26	PASS	AC=2;AF=0.92;AN=2;DP=14802;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,240:240:99:6834,716,0:0,0,107,133
chr1	897453	.	G	GCCCCC,GCCCCCC,GGCC	168.64	PASS	AC=1,0,0;AF=0.25,0.219,0.031;AN=2;DP=2167;set=filterInvariant-filterInvariant2-filterInvariant6-filterInvariant7-filterInvariant9-filterInvariant10-filterInvariant12-filterInvariant16-filterInvariant17-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant32-filterInvariant39-variant41-filterInvariant43	GT:DP:GQ:SB	0/1:84:99:2,53,29,0
chr1	897460	.	A	C	1307.22	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2672;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:60,28:88:99:913,0,3591:5,55,28,0
chr1	897465	.	A	C	1403.75	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2760;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:66,26:92:99:891,0,3537:9,57,26,0
chr1	897470	.	A	C	1260.65	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3038;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:71,26:97:99:854,0,3686:14,57,26,0
chr1	897564	.	T	C	2909.93	PASS	AC=2;AF=0.932;AN=2;DP=11047;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,212:212:99:6526,635,0:0,0,107,105
chr1	897730	.	C	T	4173.87	PASS	AC=1;AF=0.5;AN=2;DP=2340;MQ=60;set=variant6-variant12-variant14-variant25-variant30-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:137,126:263:99:2854,0,3102:70,67,58,68
chr1	898323	.	T	C	4219.65	PASS	AC=2;AF=0.977;AN=2;DP=5091;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2558,231,0:0,0,38,39
chr1	899928	.	G	C	3748.18	PASS	AC=2;AF=0.967;AN=2;DP=2449;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2289,159,0:0,0,15,38
chr1	899937	.	G	T	3318.78	PASS	AC=2;AF=0.967;AN=2;DP=2028;FractionInformativeReads=1;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:2181,147,0:0,0,13,35
chr1	899938	.	G	C	3284.59	PASS	AC=2;AF=0.967;AN=2;DP=1968;FractionInformativeReads=1;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:2181,147,0:0,0,13,35
chr1	899942	.	G	A	2961.37	PASS	AC=2;AF=0.967;AN=2;DP=2062;FractionInformativeReads=1;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:2002,135,0:0,0,10,32
chr1	899989	.	A	C	916.77	PASS	AC=2;AF=0.964;AN=2;DP=467;FS=0;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,1,7
chr1	900001	.	G	A	691.77	PASS	AC=2;AF=0.913;AN=2;DP=238;FS=0;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant22-variant24-variant25-variant29-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:18:270,18,0:0,0,1,3
chr1	900285	.	C	T	474.01	PASS	AC=2;AF=0.92;AN=2;DP=2618;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2483,172,0:0,0,44,12
chr1	900286	.	A	G	1388.37	PASS	AC=2;AF=0.955;AN=2;DP=2675;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2483,172,0:0,0,44,13
chr1	900427	.	G	A	2338.97	PASS	AC=1;AF=0.5;AN=2;DP=567;FractionInformativeReads=1;MQ=60;set=variant25-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:95,82:177:99:2118,0,2267:46,49,36,46
chr1	900717	.	CTTAT	C	1579.23	PASS	AC=1;AF=0.706;AN=2;DP=914;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:561,0,766:3,6,3,11
chr1	900730	.	G	A	310.68	PASS	AC=1;AF=0.86;AN=2;DP=1053;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:564,0,732:3,5,3,11
chr1	900972	.	T	G	2315.01	PASS	AC=2;AF=0.955;AN=2;DP=3339;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1635,165,0:0,0,27,28
chr1	901023	.	T	C	1702.94	PASS	AC=2;AF=0.943;AN=2;DP=2741;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1654,158,0:0,0,23,30
chr1	901806	.	G	C	2051.85	PASS	AC=1;AF=0.5;AN=2;DP=959;FractionInformativeReads=1;MQ=60;set=variant6-variant13-variant14-variant18-variant25-variant30-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,50:90:99:1326,0,1095:29,11,33,17
chr1	901922	.	G	A	5114.33	PASS	AC=1;AF=0.5;AN=2;DP=244;FS=2.836;FractionInformativeReads=1;MQ=60;MQRankSum=-0.157;QD=20.96;ReadPosRankSum=1.561;SOR=0.727;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:111,133:244:99:5143,0,6300:53,58,70,63
chr1	901923	.	C	A	5114.33	PASS	AC=1;AF=0.5;AN=2;DP=241;FS=3.57;FractionInformativeReads=1;MQ=60;MQRankSum=2.389;QD=21.22;ReadPosRankSum=1.827;SOR=0.748;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:111,130:241:99:5143,0,6300:53,58,69,61
chr1	902025	.	C	T	3341.26	PASS	AC=1;AF=0.5;AN=2;DP=392;MQ=60;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,68:122:99:1684,0,1386:18,36,30,38
chr1	902069	.	T	C	1899.6	PASS	AC=1;AF=0.5;AN=2;DP=965;MQ=60;set=variant6-variant14-variant25-variant30-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,43:97:99:1221,0,1665:23,31,16,27
chr1	906272	.	A	C	1484.62	PASS	AC=1;AF=0.5;AN=2;DP=918;MQ=60;set=variant8-variant23-variant25-variant31-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,56:107:99:1452,0,1171:21,30,25,31
chr1	908750	.	G	A	231.17	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=2.077;FractionInformativeReads=1;MQ=60;MQRankSum=-1.01;QD=13.6;ReadPosRankSum=-1.203;SOR=1.565;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:259,0,353:5,4,6,2
chr1	909073	.	C	T	423.71	PASS	AC=1;AF=0.65;AN=2;DP=1238;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:251,0,566:5,12,1,8
chr1	909238	.	G	C	62.99	PASS	AC=2;AF=0.782;AN=2;DP=1350;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1746,138,0:0,0,24,21
chr1	909242	.	A	G	545	PASS	AC=1;AF=0.5;AN=2;DP=85;FractionInformativeReads=1;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,29:46:99:780,0,320:8,9,15,14
chr1	909768	.	A	G	6433.3	PASS	AC=2;AF=1;AN=2;DP=9051;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4195,427,0:0,0,68,75
chr1	910394	.	C	T	2195.44	PASS	AC=1;AF=0.615;AN=2;DP=2163;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant15-variant19-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,36:69:99:1203,0,1117:14,19,12,24
chr1	910409	.	T	C	721.47	PASS	AC=1;AF=0.5;AN=2;DP=947;MQ=60;set=variant-variant3-variant6-variant10-variant18-variant23-variant24-variant25-variant28-variant30-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:947,0,814:11,12,8,19
chr1	910438	.	A	G	1028.88	PASS	AC=2;AF=0.932;AN=2;DP=2341;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,33:34:92:1103,92,0:0,1,12,21
chr1	910903	.	T	C	1448.49	PASS	AC=2;AF=0.953;AN=2;DP=2492;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1447,134,0:0,0,22,23
chr1	911595	.	A	G	1888.2	PASS	AC=2;AF=0.782;AN=2;DP=6986;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4227,413,0:0,0,70,68
chr1	912049	.	T	C	213.23	PASS	AC=1;AF=0.71;AN=2;DP=1203;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:539,0,337:3,10,5,14
chr1	914192	.	G	C	783.75	PASS	AC=2;AF=0.953;AN=2;DP=2098;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1292,126,0:0,0,25,17
chr1	914333	.	C	G	1672.94	PASS	AC=1;AF=0.712;AN=2;DP=4428;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,60:111:99:1562,0,1233:30,21,37,23
chr1	914852	.	G	C	2797.3	PASS	AC=1;AF=0.712;AN=2;DP=6985;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,79:169:99:2082,0,2468:49,41,44,35
chr1	914876	.	T	C	8511.63	PASS	AC=2;AF=0.953;AN=2;DP=10722;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:7561,618,0:0,0,111,95
chr1	914940	.	T	C	3310.69	PASS	AC=1;AF=0.712;AN=2;DP=9728;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,133:253:99:3175,0,2598:57,63,70,63
chr1	915227	.	A	G	2530.8	PASS	AC=2;AF=0.953;AN=2;DP=6830;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3704,330,0:0,0,66,44
chr1	916549	.	A	G	815.56	PASS	AC=1;AF=0.817;AN=2;DP=3721;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:747,0,920:14,22,13,15
chr1	916667	.	C	T	106.67	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.849;QD=7.11;ReadPosRankSum=-1.24;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:135,0,374:2,9,0,4
chr1	917640	.	G	A	365.81	PASS	AC=1;AF=0.536;AN=2;DP=604;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant10-variant18-variant22-variant23-variant24-variant25-variant28-variant30-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:614,0,546:10,15,13,15
chr1	935222	.	C	A	762.28	PASS	AC=1;AF=0.682;AN=2;DP=2685;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:833,0,949:8,23,9,24
chr1	935459	.	A	G	693.98	PASS	AC=1;AF=0.738;AN=2;DP=1591;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:212,0,324:7,8,6,3
chr1	935492	.	G	T	799.7	PASS	AC=1;AF=0.738;AN=2;DP=1755;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:156,0,397:8,10,3,4
chr1	948692	.	G	A	732.73	PASS	AC=1;AF=0.929;AN=2;DP=881;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:104,0,209:5,2,3,1
chr1	948846	.	T	TA	4513.25	PASS	AC=1;AF=0.93;AN=2;DP=4122;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:1210,0,2166:24,17,20,13
chr1	948870	.	C	G	4658.54	PASS	AC=1;AF=0.94;AN=2;DP=4725;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,33:85:99:1144,0,2494:29,23,19,14
chr1	948921	.	T	C	4151.07	PASS	AC=1;AF=0.94;AN=2;DP=5417;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,38:93:99:879,0,1453:28,27,21,17
chr1	949654	.	A	G	6919.18	PASS	AC=1;AF=0.929;AN=2;DP=12519;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,143:268:99:3807,0,3122:56,69,75,68
chr1	949925	.	C	T	1683.14	PASS	AC=1;AF=0.94;AN=2;DP=1781;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,34:47:99:1080,0,390:2,11,12,22
chr1	970836	.	G	A	287.86	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.766;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:316,0,229:2,4,3,6
chr1	975992	.	GACGTGGGT	G	1067.56	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=2.407;FractionInformativeReads=1;MQ=60;MQRankSum=1.355;QD=20.14;ReadPosRankSum=0.206;SOR=1.214;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,30:53:99:1105,0,2125:12,11,19,11
chr1	976514	.	C	A	552.42	PASS	AC=2;AF=0.908;AN=2;DP=834;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:35:368,35,0:0,0,9,3
chr1	976629	.	C	T	1701.66	PASS	AC=1;AF=0.5;AN=2;DP=230;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,62:117:99:1730,0,1524:40,15,47,15
chr1	977330	.	T	C	1812.74	PASS	AC=2;AF=0.907;AN=2;DP=3375;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2116,198,0:0,0,41,25
chr1	977570	.	G	A	3452	PASS	AC=1;AF=0.872;AN=2;DP=3594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:814,0,603:9,14,8,20
chr1	978603	.	CCT	C	1953.61	PASS	AC=1;AF=0.625;AN=2;DP=5268;MQ=60;set=variant-variant2-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:77,81:158:99:3147,0,3321:53,24,52,29
chr1	980460	.	G	A	1079.07	PASS	AC=2;AF=0.919;AN=2;DP=1636;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1356,134,0:0,0,28,17
chr1	981087	.	A	G	10819.3	PASS	AC=1;AF=0.895;AN=2;DP=16227;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,168:325:99:4576,0,3968:80,77,81,87
chr1	981931	.	A	G	3749.51	PASS	AC=1;AF=0.869;AN=2;DP=5620;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,69:135:99:1921,0,1588:39,27,40,29
chr1	982016	.	A	C	4005.14	PASS	AC=1;AF=0.5;AN=2;DP=295;FS=0.425;FractionInformativeReads=1;MQ=60;MQRankSum=3.348;QD=13.58;ReadPosRankSum=1.19;SOR=0.741;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:139,156:295:99:4033,0,3164:75,64,86,70
chr1	982844	.	G	C	3750.49	PASS	AC=1;AF=0.571;AN=2;DP=1615;MQ=60;set=variant4-variant11-variant32-variant33-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,84:189:99:2126,0,2790:61,44,46,38
chr1	982941	.	T	C	7668.35	PASS	AC=1;AF=0.86;AN=2;DP=11826;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,101:223:99:2429,0,3152:60,62,54,47
chr1	982994	.	T	C	7388.93	PASS	AC=1;AF=0.86;AN=2;DP=11974;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:137,115:252:99:2792,0,3546:64,73,53,62
chr1	983925	.	C	A	130.5	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:31:159,0,31:1,1,0,4
chr1	984102	.	G	A	46.53	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.026;QD=11.63;ReadPosRankSum=1.026;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:37:75,0,37:1,1,2,0
chr1	984147	.	CAAAAAAAAAAA	C,CAAAAAAAAAA,CAAAAAA	457.58	PASS	AC=1,0,0;AF=0.554,0.041,0.014;AN=2;DP=769;MQ=60;set=variant-variant2-filterInvariant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:14:45:1,1,6,6
chr1	984171	.	CAG	C	496.56	PASS	AC=1;AF=0.618;AN=2;DP=874;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,13:14:0:543,0,0:0,1,7,6
chr1	984202	.	A	G	93.24	PASS	AC=1;AF=0.5;AN=2;DP=45;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,5:21:99:121,0,367:8,8,3,2
chr1	984302	.	T	C	572.85	PASS	AC=1;AF=0.614;AN=2;DP=1379;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:284,0,238:7,7,7,6
chr1	984495	.	C	G	45.62	PASS	AC=2;AF=1;AN=2;DP=2;FS=0;FractionInformativeReads=1;MQ=60;QD=22.81;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:74,6,0:0,0,0,2
chr1	984847	.	G	C	4821.68	PASS	AC=1;AF=0.5;AN=2;DP=1298;FractionInformativeReads=1;MQ=60;set=variant9-variant28-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:146,150:296:99:3534,0,3558:63,83,75,75
chr1	984888	.	A	G	3907.64	PASS	AC=1;AF=0.5;AN=2;DP=1086;MQ=60;set=variant9-variant28-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:127,119:246:99:3162,0,3366:59,68,55,64
chr1	985239	.	C	T	2301.64	PASS	AC=1;AF=0.5;AN=2;DP=320;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:72,100:172:99:2330,0,1767:42,30,52,48
chr1	985266	.	C	T	1809.38	PASS	AC=1;AF=0.6;AN=2;DP=7784;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,85:197:99:1950,0,2632:62,50,51,34
chr1	985446	.	G	T	777.49	PASS	AC=1;AF=0.611;AN=2;DP=699;MQ=60;set=variant3-variant5-variant9-variant11-variant12-variant13-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:42:247,0,42:0,2,1,4
chr1	985449	.	G	A	473.22	PASS	AC=1;AF=0.672;AN=2;DP=707;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:15:217,0,15:0,1,3,3
chr1	985900	.	C	T	2367.58	PASS	AC=1;AF=0.5;AN=2;DP=815;FractionInformativeReads=1;MQ=60;set=variant9-variant28-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:117,80:197:99:1938,0,2674:51,66,39,41
chr1	985999	.	G	T	1322.46	PASS	AC=1;AF=0.5;AN=2;DP=224;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,53:98:99:1351,0,1170:14,31,23,30
chr1	986285	.	C	T	887.74	PASS	AC=1;AF=0.5;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,41:76:99:916,0,958:24,11,24,17
chr1	986443	.	C	T	2871.26	PASS	AC=1;AF=0.857;AN=2;DP=5823;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,66:119:99:1805,0,1492:33,20,29,37
chr1	986737	.	T	C	1220.56	PASS	AC=1;AF=0.5;AN=2;DP=331;FractionInformativeReads=1;MQ=60;set=variant9-variant28-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:992,0,885:20,14,18,16
chr1	987200	.	C	T	3285.53	PASS	AC=1;AF=0.857;AN=2;DP=4407;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,55:98:99:1401,0,1152:21,22,31,24
chr1	988659	.	T	TCGTGTCCGCAC	564.79	PASS	AC=1;AF=0.5;AN=2;DP=139;MQ=60;set=variant9-variant28-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:658,0,1337:7,4,11,2
chr1	988932	.	G	C	2443.4	PASS	AC=1;AF=0.857;AN=2;DP=2819;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,30:64:99:815,0,863:14,20,10,20
chr1	989847	.	C	T	567.97	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=2.31;FractionInformativeReads=1;MQ=60;MQRankSum=1.17;QD=10.33;ReadPosRankSum=3.005;SOR=0.411;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:596,0,813:10,18,12,15
chr1	990280	.	C	T	868.79	PASS	AC=1;AF=0.671;AN=2;DP=2088;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,16:45:99:367,0,730:16,13,11,5
chr1	990380	.	C	T	393.14	PASS	AC=1;AF=0.583;AN=2;DP=1808;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:741,0,660:13,9,12,16
chr1	990417	.	T	C	939.82	PASS	AC=1;AF=0.597;AN=2;DP=2479;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:758,0,918:19,15,15,13
chr1	990517	.	C	T	4780.66	PASS	AC=2;AF=0.919;AN=2;DP=6138;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3475,334,0:0,0,65,47
chr1	990533	.	G	A	1517.7	PASS	AC=1;AF=0.5;AN=2;DP=643;MQ=60;set=variant9-variant13-variant28-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,58:115:99:1393,0,1594:29,28,35,23
chr1	990687	.	G	A	1539.92	PASS	AC=1;AF=0.5;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,58:113:99:1568,0,1459:26,29,23,35
chr1	990773	.	C	T	2732.49	PASS	AC=2;AF=0.905;AN=2;DP=4033;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2351,223,0:0,0,37,38
chr1	990806	.	G	A	2966.61	PASS	AC=2;AF=0.905;AN=2;DP=4009;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2407,236,0:0,0,38,42
chr1	990882	.	C	T	1335.19	PASS	AC=1;AF=0.5;AN=2;DP=183;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,55:96:99:1363,0,1089:22,19,29,26
chr1	990984	.	G	A	4622.06	PASS	AC=2;AF=0.919;AN=2;DP=6560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4008,389,0:0,0,63,67
chr1	1007203	.	A	G	1905.14	PASS	AC=2;AF=0.841;AN=2;DP=1876;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1649,117,0:0,0,35,4
chr1	1007432	.	G	A	2492.6	PASS	AC=2;AF=0.635;AN=2;DP=8614;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,192:193:99:5511,564,0:1,0,95,97
chr1	1017170	.	C	G	247.35	PASS	AC=2;AF=0.657;AN=2;DP=1093;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1052,96,0:0,0,21,11
chr1	1017197	.	C	T	440.11	PASS	AC=2;AF=0.643;AN=2;DP=1551;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1351,126,0:0,0,25,17
chr1	1017341	.	G	T	3132.43	PASS	AC=2;AF=0.838;AN=2;DP=3788;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2441,232,0:0,0,43,35
chr1	1017897	.	C	A	1094.6	PASS	AC=1;AF=0.5;AN=2;DP=164;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,46:78:99:1123,0,818:21,11,25,21
chr1	1018144	.	T	C	3254.98	PASS	AC=2;AF=0.643;AN=2;DP=9092;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:5993,600,0:0,0,98,103
chr1	1018429	.	C	T	1148.87	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=0.768;FractionInformativeReads=1;MQ=60;MQRankSum=-0.618;QD=11.15;ReadPosRankSum=-1.907;SOR=0.575;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,48:103:99:1177,0,1385:19,36,18,30
chr1	1019175	.	C	G	2185.37	PASS	AC=1;AF=0.838;AN=2;DP=2769;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,28:63:99:1051,0,1884:19,16,20,8
chr1	1019180	.	T	C	703.91	PASS	AC=1;AF=0.622;AN=2;DP=2623;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:1054,0,1862:18,16,20,8
chr1	1020406	.	T	C	296.28	PASS	AC=2;AF=0.875;AN=2;DP=688;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:578,42,0:0,0,12,2
chr1	1021415	.	A	G	1461.02	PASS	AC=2;AF=0.885;AN=2;DP=2498;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,63:64:99:2126,182,0:0,1,21,42
chr1	1026428	.	G	A	777.42	PASS	AC=1;AF=0.5;AN=2;DP=118;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,29:49:99:806,0,465:9,11,9,20
chr1	1026707	.	C	A	1062.94	PASS	AC=2;AF=0.645;AN=2;DP=4380;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3291,324,0:0,0,66,43
chr1	1026801	.	T	A	2434.16	PASS	AC=2;AF=0.686;AN=2;DP=6007;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4538,454,0:0,0,74,78
chr1	1026962	.	C	A	1055.27	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.451;QD=27.77;ReadPosRankSum=1.802;SOR=0.906;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,27:38:99:1084,0,574:5,6,11,16
chr1	1026963	.	A	T	1055.27	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=1.38;FractionInformativeReads=1;MQ=60;MQRankSum=1.213;QD=28.52;ReadPosRankSum=2.708;SOR=1.013;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,26:37:99:1084,0,574:5,6,10,16
chr1	1115994	.	G	A	3189.09	PASS	AC=1;AF=0.583;AN=2;DP=1578;MQ=60;set=variant-variant2-variant3-variant7-variant14-variant19-variant20-variant28-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,37:99:99:853,0,1622:38,24,25,12
chr1	1116231	.	T	C	966.43	PASS	AC=1;AF=0.5;AN=2;DP=625;MQ=60;set=variant-variant3-variant7-variant14-variant28-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,28:58:99:690,0,612:8,22,9,19
chr1	1117398	.	A	G	381.22	PASS	AC=1;AF=0.625;AN=2;DP=467;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant23-variant26-variant27-variant28-variant33-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,28:32:26:772,0,26:1,3,9,19
chr1	1118212	.	T	C	1032.79	PASS	AC=1;AF=0.568;AN=2;DP=2081;MQ=60;set=variant-variant3-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant20-variant23-variant26-variant27-variant28-variant33-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,44:85:99:1018,0,945:25,16,27,17
chr1	1118275	.	C	T	1408.79	PASS	AC=1;AF=0.5;AN=2;DP=1322;MQ=60;set=variant-variant3-variant7-variant14-variant28-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,69:141:99:1628,0,1795:36,36,35,34
chr1	1120488	.	A	C	2938.66	PASS	AC=1;AF=0.5;AN=2;DP=208;FS=1.08;FractionInformativeReads=0.995;MQ=60;MQRankSum=-1.94;QD=14.13;ReadPosRankSum=1.039;SOR=0.586;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:93,114:207:99:2967,0,2359:50,43,58,56
chr1	1120503	.	G	A	2697.52	PASS	AC=1;AF=0.5;AN=2;DP=196;FS=1.105;FractionInformativeReads=1;MQ=60;MQRankSum=2.763;QD=13.76;ReadPosRankSum=-0.229;SOR=0.608;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:88,108:196:99:2726,0,2309:46,42,54,54
chr1	1120785	.	C	T	2968.94	PASS	AC=1;AF=0.5;AN=2;DP=225;FS=1.039;FractionInformativeReads=1;MQ=60;MQRankSum=-0.29;QD=13.2;ReadPosRankSum=-0.561;SOR=0.799;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:108,117:225:99:2997,0,2655:47,61,48,69
chr1	1133077	.	A	G	337.18	PASS	AC=1;AF=0.595;AN=2;DP=1102;MQ=60;set=variant-variant2-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant23-variant24-variant26-variant31-variant33-variant34-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:366,0,659:13,8,8,7
chr1	1139202	.	T	C	2205.28	PASS	AC=1;AF=0.5;AN=2;DP=1002;MQ=60;set=variant7-variant16-variant20-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,79:145:99:1898,0,1499:35,31,42,37
chr1	1139498	.	C	T	1998.21	PASS	AC=1;AF=0.5;AN=2;DP=165;FS=1.927;FractionInformativeReads=1;MQ=60;MQRankSum=-0.791;QD=12.11;ReadPosRankSum=1.958;SOR=0.545;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:85,80:165:99:2026,0,2357:46,39,40,40
chr1	1139703	.	C	A	1089.18	PASS	AC=1;AF=0.5;AN=2;DP=88;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.029;QD=12.38;ReadPosRankSum=-0.614;SOR=0.734;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,42:88:99:1117,0,1215:18,28,16,26
chr1	1140654	.	A	G	386.37	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.332;QD=11.36;ReadPosRankSum=-2.117;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:415,0,562:15,5,11,3
chr1	1141940	.	G	A,C	977.11	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=225;FractionInformativeReads=1;MQ=60;set=variant26-variant41	GT:DP:GQ:SB	0/2:107:99:25,23,28,31
chr1	1147486	.	G	A	3217.33	PASS	AC=1;AF=0.5;AN=2;DP=235;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.055;QD=13.69;ReadPosRankSum=1.949;SOR=0.704;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:101,134:235:99:3246,0,2393:47,54,62,72
chr1	1149316	.	C	G	184.18	PASS	AC=1;AF=0.5;AN=2;DP=58;FractionInformativeReads=1;MQ=60;set=variant14-variant16-variant20-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:239,0,275:5,2,4,4
chr1	1152254	.	C	T	139.66	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:28:187,0,28:1,0,4,1
chr1	1152631	.	C	A	1998.68	PASS	AC=1;AF=0.5;AN=2;DP=1563;MQ=60;set=variant14-variant15-variant16-variant20-variant23-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,67:145:99:1577,0,1969:44,34,37,30
chr1	1158534	.	G	GAC	762.4	PASS	AC=1;AF=0.5;AN=2;DP=256;set=variant15-variant18-variant20-variant23-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:551,0,458:10,4,13,3
chr1	1158562	.	AAC	A	1230.76	PASS	AC=1;AF=0.5;AN=2;DP=410;MQ=60;set=variant15-variant18-variant20-variant23-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,27:46:99:1029,0,673:14,5,20,7
chr1	1158631	.	A	G	3973.15	PASS	AC=2;AF=0.869;AN=2;DP=5952;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3055,291,0:0,0,55,42
chr1	1159485	.	C	T	327.04	PASS	AC=1;AF=0.5;AN=2;DP=143;FractionInformativeReads=1;MQ=60;set=variant15-variant18-variant20-variant23-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:347,0,231:2,6,2,7
chr1	1164031	.	A	G	1867.49	PASS	AC=1;AF=0.5;AN=2;DP=178;FS=0.556;FractionInformativeReads=0.994;MQ=60;MQRankSum=1.055;QD=10.49;ReadPosRankSum=1.54;SOR=0.755;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:100,77:177:99:1896,0,2387:47,53,35,42
chr1	1164072	.	C	T	2457.98	PASS	AC=1;AF=0.5;AN=2;DP=153;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=3.428;QD=16.07;ReadPosRankSum=-1.665;SOR=0.715;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:85,68:153:99:2486,0,3958:33,52,26,42
chr1	1164090	.	T	C	2188.79	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=0.637;FractionInformativeReads=1;MQ=60;MQRankSum=-2.037;QD=15.52;ReadPosRankSum=-2.004;SOR=0.772;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,60:141:99:2217,0,3808:34,47,24,36
chr1	1164179	.	G	A	690.65	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=6.537;FractionInformativeReads=0.987;MQ=60;MQRankSum=-0.419;QD=9.09;ReadPosRankSum=1.072;SOR=1.529;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,29:75:99:719,0,1239:20,26,8,21
chr1	1164250	.	C	CCA	368.72	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=0;FractionInformativeReads=0.938;MQ=60;MQRankSum=-1.39;QD=7.68;ReadPosRankSum=-0.163;SOR=0.709;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,13:45:99:406,0,1274:15,17,6,7
chr1	1167796	.	C	T	299.8	PASS	AC=1;AF=0.563;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant18-variant20-variant23-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:177,0,180:4,3,5,3
chr1	1168180	.	G	C	2054.03	PASS	AC=1;AF=0.5;AN=2;DP=126;FS=3.44;FractionInformativeReads=1;MQ=60;MQRankSum=0.42;QD=16.3;ReadPosRankSum=2.515;SOR=0.447;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:53,73:126:99:2082,0,1383:16,37,27,46
chr1	1169485	.	G	A	1213.56	PASS	AC=1;AF=0.5;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant16-variant20-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,36:67:99:997,0,887:17,14,21,15
chr1	1169637	.	T	C	1278.3	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.092;QD=12.41;ReadPosRankSum=-0.544;SOR=0.651;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,52:103:99:1307,0,1236:22,29,23,29
chr1	1170005	.	C	T	1038.05	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=8.579;FractionInformativeReads=0.989;MQ=60;MQRankSum=0.724;QD=11.41;ReadPosRankSum=-1.29;SOR=0.96;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,42:90:99:1066,0,1272:28,20,17,25
chr1	1177821	.	G	A	1156.53	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=2.153;FractionInformativeReads=1;MQ=60;MQRankSum=-0.368;QD=16.52;ReadPosRankSum=0.037;SOR=0.434;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,45:70:99:1185,0,636:17,8,27,18
chr1	1177981	.	C	T	3468.64	PASS	AC=1;AF=0.5;AN=2;DP=276;FS=3.31;FractionInformativeReads=0.996;MQ=60;MQRankSum=1.348;QD=12.57;ReadPosRankSum=2.381;SOR=0.521;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:126,149:275:99:3497,0,3007:72,54,78,71
chr1	1178266	.	C	T	2726.8	PASS	AC=1;AF=0.5;AN=2;DP=181;FS=3.481;FractionInformativeReads=1;MQ=60;MQRankSum=1.927;QD=15.07;ReadPosRankSum=2.501;SOR=0.479;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,101:181:99:2755,0,2004:50,30,57,44
chr1	1181751	.	T	C	230.56	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant23-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:31:151,0,31:1,1,4,0
chr1	1196863	.	T	C	680.56	PASS	AC=2;AF=1;AN=2;DP=1591;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:975,78,0:0,0,5,21
chr1	1198496	.	T	TGGTGAACACAGACGCTACAGGC	582.6	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;MQ=60;set=variant7-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:139,0,1486:8,1,4,0
chr1	1201356	.	G	A	1200.57	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=3.665;FractionInformativeReads=1;MQ=60;MQRankSum=-1.448;QD=11.22;ReadPosRankSum=-1.076;SOR=1.106;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,45:107:99:1229,0,1726:33,29,28,17
chr1	1201640	.	T	C	1268.95	PASS	AC=1;AF=0.5;AN=2;DP=374;MQ=60;set=variant7-variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:65,51:116:99:1311,0,1715:26,39,22,29
chr1	1203387	.	G	A	1305.61	PASS	AC=1;AF=0.5;AN=2;DP=163;MQ=60;set=variant7-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:838,0,596:12,15,10,22
chr1	1216470	.	A	G	1429.86	PASS	AC=1;AF=0.5;AN=2;DP=121;FS=3.296;FractionInformativeReads=1;MQ=60;MQRankSum=-0.889;QD=11.82;ReadPosRankSum=-0.532;SOR=0.903;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,59:121:99:1458,0,1476:32,30,26,33
chr1	1217011	.	A	C	1474.29	PASS	AC=1;AF=0.5;AN=2;DP=296;FractionInformativeReads=1;MQ=60;set=variant7-variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,61:112:99:2367,0,2726:23,28,28,33
chr1	1217020	.	G	C	1387.27	PASS	AC=1;AF=0.5;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant7-variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,61:109:99:2395,0,2651:21,27,28,33
chr1	1220822	.	G	A	171.15	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.633;QD=17.12;ReadPosRankSum=0.365;SOR=0.307;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:199,0,145:4,0,5,1
chr1	1220954	.	G	A	658.4	PASS	AC=1;AF=0.5;AN=2;DP=216;FractionInformativeReads=1;MQ=60;set=variant14-variant28-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,28:49:99:745,0,547:12,9,17,11
chr1	1221001	.	A	G	1085.25	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0.935;FractionInformativeReads=1;MQ=60;MQRankSum=-1.615;QD=16.2;ReadPosRankSum=-1.898;SOR=0.843;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,41:67:99:1113,0,559:13,13,22,19
chr1	1221728	.	G	A	1645.59	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=1.823;FractionInformativeReads=1;MQ=60;MQRankSum=-0.459;QD=15.1;ReadPosRankSum=1.469;SOR=0.472;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,59:109:99:1674,0,1505:11,39,16,43
chr1	1222051	.	A	T,G	342.2	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=57;FractionInformativeReads=1;MQ=60;set=variant14-variant41	GT:DP:GQ:SB	0/2:27:99:10,5,11,1
chr1	1225641	.	C	A	2307.28	PASS	AC=1;AF=0.5;AN=2;DP=851;MQ=60;set=variant11-variant15-variant23-variant26-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,55:100:99:1327,0,1149:25,20,26,29
chr1	1225810	.	C	CGG	2551.82	PASS	AC=1;AF=0.5;AN=2;DP=216;FS=2.52;FractionInformativeReads=0.944;MQ=60;MQRankSum=-1.259;QD=11.81;ReadPosRankSum=1.041;SOR=0.53;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:132,72:204:99:2589,0,6801:72,60,36,36
chr1	1225824	.	G	A	2522.75	PASS	AC=1;AF=0.5;AN=2;DP=227;FS=0.521;FractionInformativeReads=1;MQ=60;MQRankSum=2.074;QD=11.11;ReadPosRankSum=2.215;SOR=0.62;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:154,73:227:99:2551,0,7115:81,73,37,36
chr1	1225945	.	G	C	2505.74	PASS	AC=1;AF=0.5;AN=2;DP=192;FS=1.172;FractionInformativeReads=0.995;MQ=60;MQRankSum=-1.039;QD=13.05;ReadPosRankSum=4.795;SOR=0.575;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:120,71:191:99:2534,0,6140:52,68,33,38
chr1	1225959	.	C	G	2086.18	PASS	AC=1;AF=0.5;AN=2;DP=2796;MQ=60;set=variant14-variant20-variant22-variant24-variant27-variant28-variant31-variant33-variant34-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:114,73:187:99:2548,0,6154:47,67,34,39
chr1	1226221	.	A	G	556.27	PASS	AC=1;AF=0.5;AN=2;DP=563;MQ=60;set=variant6-variant8-variant11-variant13-variant15-variant23-variant26-variant27-variant28-variant29-variant33-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:257,0,279:5,4,4,4
chr1	1227664	.	TTGAG	T	115.64	PASS	AC=1;AF=0.5;AN=2;DP=131;MQ=60;set=variant14-variant15-variant23-variant24-variant27-variant31-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:303,0,619:6,5,6,2
chr1	1227847	.	C	T	1843.61	PASS	AC=1;AF=0.5;AN=2;DP=689;MQ=60;set=variant2-variant10-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,60:136:99:1256,0,2008:49,27,37,23
chr1	1229680	.	G	T	6334.85	PASS	AC=2;AF=0.977;AN=2;DP=8725;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5791,508,0:0,0,74,96
chr1	1230419	.	T	C	134.41	PASS	AC=2;AF=0.6;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant16-variant24-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,18:19:11:399,11,0:0,1,9,9
chr1	1233902	.	ACCCCCGCCTAAGGACCCCG	A	352.86	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.212;QD=22.05;ReadPosRankSum=2.011;SOR=1.085;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:390,0,419:4,3,6,3
chr1	1233941	.	T	C	563.05	PASS	AC=1;AF=0.5;AN=2;DP=218;FractionInformativeReads=1;MQ=60;set=variant14-variant16-variant24-variant31-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:591,0,554:13,6,11,7
chr1	1234955	.	C	T	130.44	PASS	AC=1;AF=0.5;AN=2;DP=70;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,6:20:99:193,0,370:8,6,4,2
chr1	1235710	.	T	A	71.16	PASS	AC=1;AF=0.5;AN=2;DP=120;FractionInformativeReads=1;MQ=60;set=variant14-variant16-variant24-variant31-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:79:327,0,79:0,3,0,9
chr1	1237604	.	T	C	106.77	PASS	AC=2;AF=0.977;AN=2;DP=522;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:406,33,0:0,0,1,10
chr1	1239339	.	T	G	3655.98	PASS	AC=1;AF=0.932;AN=2;DP=4131;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:48,40:88:99:1219,0,1590:41,7,33,7
chr1	1242707	.	A	G	1082.04	PASS	AC=2;AF=0.886;AN=2;DP=3710;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2283,209,0:0,0,21,49
chr1	1243896	.	C	T	151.77	PASS	AC=1;AF=0.9;AN=2;DP=334;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:141,0,261:4,4,4,0
chr1	1243934	.	A	G	95.94	PASS	AC=2;AF=0.895;AN=2;DP=144;FS=0;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant16-variant20-variant22-variant25-variant27-variant29-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:371,27,0:0,0,9,0
chr1	1245368	.	G	A	1846.94	PASS	AC=1;AF=0.814;AN=2;DP=2804;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,23:59:99:661,0,1132:8,28,5,18
chr1	1246004	.	A	G	4796.48	PASS	AC=2;AF=1;AN=2;DP=6127;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3524,329,0:0,0,62,48
chr1	1246303	.	G	A	2916.66	PASS	AC=1;AF=0.5;AN=2;DP=541;set=variant10-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,74:154:99:1982,0,2230:32,48,37,37
chr1	1247494	.	T	C	1685.79	PASS	AC=1;AF=0.837;AN=2;DP=3035;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,24:87:99:433,0,1803:35,28,10,14
chr1	1247578	.	T	TGGGGGGGGGG,TGGGGG,TGGGG,TGG,TGGGGGGGGG	263.17	PASS	AC=0,0,0,0,1;AF=0.032,0.21,0.403,0.161,0.016;AN=2;DP=690;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/5:18:99:15,0,0,3
chr1	1248620	.	C	T	344.72	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=3.732;FractionInformativeReads=1;MQ=60;MQRankSum=0.529;QD=10.77;ReadPosRankSum=1.02;SOR=0.214;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:373,0,509:3,14,5,10
chr1	1249187	.	G	A	9794.83	PASS	AC=1;AF=0.814;AN=2;DP=15887;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:127,159:286:99:4193,0,3249:60,67,80,79
chr1	1249354	.	G	C	1653.95	PASS	AC=1;AF=0.5;AN=2;DP=123;FS=5.83;FractionInformativeReads=0.992;MQ=60;MQRankSum=-0.693;QD=13.45;ReadPosRankSum=2.314;SOR=0.327;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,65:122:99:1682,0,1622:18,39,28,37
chr1	1254136	.	G	A	1474.25	PASS	AC=2;AF=0.92;AN=2;DP=2435;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1525,141,0:0,0,34,13
chr1	1254436	.	A	G	6032.9	PASS	AC=2;AF=1;AN=2;DP=7323;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:5232,426,0:0,0,63,70
chr1	1254443	.	G	A	6097.61	PASS	AC=1;AF=0.909;AN=2;DP=7517;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:71,68:139:99:1744,0,1728:33,38,37,31
chr1	1254841	.	C	G	3017.72	PASS	AC=1;AF=0.909;AN=2;DP=6951;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:91,51:142:99:1271,0,2369:47,44,17,34
chr1	1257282	.	A	C	1386.68	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=13223;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:169,60:229:99:1097,0,7972:31,138,60,0
chr1	1257286	.	A	C	934.06	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=12942;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:166,76:242:99:1586,0,2400:29,137,72,4
chr1	1257289	.	T	C	1012.93	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=12171;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:183,51:234:99:1016,0,8323:38,145,51,0
chr1	1258527	.	C	T	589.75	PASS	AC=1;AF=0.5;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant10-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,32:60:99:940,0,697:17,11,23,9
chr1	1260168	.	C	A	419.87	PASS	AC=1;AF=0.919;AN=2;DP=754;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:98:98,0,196:3,5,4,1
chr1	1262591	.	C	T	5793.43	PASS	AC=2;AF=0.92;AN=2;DP=11197;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,246:246:99:7118,732,0:0,0,145,101
chr1	1262966	.	C	T	5368.34	PASS	AC=2;AF=0.92;AN=2;DP=8392;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:5896,563,0:0,0,101,87
chr1	1263144	.	G	A	5057.15	PASS	AC=2;AF=0.943;AN=2;DP=8619;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:4936,506,0:0,0,77,93
chr1	1263457	.	T	C	6336.73	PASS	AC=2;AF=1;AN=2;DP=8452;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:5016,486,0:0,0,89,73
chr1	1264223	.	T	A	783.24	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=1.048;FractionInformativeReads=1;MQ=60;MQRankSum=-0.957;QD=13.5;ReadPosRankSum=0.303;SOR=0.963;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:811,0,729:11,17,10,20
chr1	1267504	.	C	T	1734.81	PASS	AC=1;AF=0.5;AN=2;DP=164;FS=0.583;FractionInformativeReads=0.994;MQ=60;MQRankSum=0.125;QD=10.58;ReadPosRankSum=2.114;SOR=0.787;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:84,79:163:99:1763,0,1976:47,37,46,33
chr1	1267606	.	C	T	1597.05	PASS	AC=1;AF=0.5;AN=2;DP=139;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.155;QD=11.49;ReadPosRankSum=0.799;SOR=0.704;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:77,62:139:99:1625,0,1928:35,42,28,34
chr1	1268253	.	G	A	3004.12	PASS	AC=1;AF=0.5;AN=2;DP=284;FS=0;FractionInformativeReads=0.996;MQ=60;MQRankSum=0.355;QD=10.58;ReadPosRankSum=-2.741;SOR=0.703;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:164,119:283:99:3032,0,4242:96,68,70,49
chr1	1268847	.	T	G	6254.9	PASS	AC=2;AF=1;AN=2;DP=13507;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,296:297:99:8894,878,0:1,0,153,143
chr1	1269484	.	G	A	2348.15	PASS	AC=1;AF=0.5;AN=2;DP=140;FS=0.653;FractionInformativeReads=0.993;MQ=60;MQRankSum=-0.305;QD=16.77;ReadPosRankSum=0.646;SOR=0.592;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,80:139:99:2376,0,1653:37,22,48,32
chr1	1269554	.	T	C	7467.9	PASS	AC=2;AF=1;AN=2;DP=11872;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,241:241:99:7537,722,0:0,0,134,107
chr1	1269896	.	C	G	3366.58	PASS	AC=1;AF=0.5;AN=2;DP=171;FS=4.437;FractionInformativeReads=1;MQ=60;MQRankSum=-0.917;QD=19.69;ReadPosRankSum=2.665;SOR=0.79;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,90:171:99:3395,0,3694:43,38,41,49
chr1	1269915	.	G	A	3336.61	PASS	AC=1;AF=0.5;AN=2;DP=165;FS=5.597;FractionInformativeReads=1;MQ=60;MQRankSum=-2.07;QD=20.22;ReadPosRankSum=1.28;SOR=0.576;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:79,86:165:99:3365,0,3565:45,34,41,45
chr1	1270329	.	A	G	3230.16	PASS	AC=2;AF=1;AN=2;DP=3749;FS=0;MQ=60;MQRankSum=1.347;ReadPosRankSum=1.572;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2072,174,0:0,0,32,26
chr1	1270359	.	T	C	3083.73	PASS	AC=2;AF=1;AN=2;DP=3908;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,60:61:99:2030,172,0:0,1,38,22
chr1	1271175	.	A	G	1988.59	PASS	AC=2;AF=1;AN=2;DP=2459;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,46:47:99:1581,99,0:1,0,17,29
chr1	1273116	.	A	G	5293.62	PASS	AC=2;AF=0.932;AN=2;DP=8387;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,160:161:99:4677,441,0:1,0,75,85
chr1	1273278	.	A	G	827.3	PASS	AC=2;AF=0.875;AN=2;DP=1356;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:846,63,0:0,0,15,6
chr1	1273614	.	T	C	326.52	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1188;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:45,15:60:99:252,0,854:11,34,15,0
chr1	1273622	.	G	C	292.2	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1946;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:52,12:64:97:97,0,2710:17,35,12,0
chr1	1273625	.	CTGAAG	C	261.13	PASS	AC=1;AF=0.5;AN=2;DP=1435;MQ=60;set=variant2-variant3-variant4-variant12-filterInvariant14-variant16-variant17-filterInvariant21-variant25-variant29-variant35-variant36-variant38-variant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:65,12:77:67:67,0,3141:26,39,12,0
chr1	1274794	.	G	A	832.41	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=1.185;FractionInformativeReads=1;MQ=60;MQRankSum=1.246;QD=14.86;ReadPosRankSum=2.64;SOR=0.976;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:861,0,930:21,8,21,6
chr1	1275093	.	G	A	1925.56	PASS	AC=1;AF=0.5;AN=2;DP=155;FS=3.857;FractionInformativeReads=0.994;MQ=60;MQRankSum=-0.002;QD=12.42;ReadPosRankSum=0.636;SOR=0.682;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,92:154:99:1954,0,1320:34,28,43,49
chr1	1275264	.	A	G,ACAGCCGCATGTCCCCCAGCAGCCCCCACAGACCCACCCG	2324.29	PASS	AC=0,2;AF=0.056,0.833;AN=2;DP=501;set=variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:20:51:0,0,0,20
chr1	1276973	.	G	GACAC	1592.74	PASS	AC=2;AF=1;AN=2;DP=5299;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:5044,340,0:0,0,71,40
chr1	1277533	.	T	C	3970.84	PASS	AC=2;AF=1;AN=2;DP=5089;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3256,273,0:0,0,22,69
chr1	1278237	.	T	C	1888.86	PASS	AC=2;AF=1;AN=2;DP=2884;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2238,198,0:0,0,19,47
chr1	1284490	.	G	A	2303.77	PASS	AC=2;AF=0.943;AN=2;DP=3211;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1901,170,0:0,0,14,43
chr1	1288345	.	A	G	2145.3	PASS	AC=2;AF=1;AN=2;DP=2832;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2090,200,0:0,0,38,29
chr1	1288471	.	C	T	4023.57	PASS	AC=1;AF=0.932;AN=2;DP=5852;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:50,46:96:99:1272,0,1316:29,21,27,19
chr1	1288583	.	C	G	5048.79	PASS	AC=2;AF=0.955;AN=2;DP=8846;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5222,509,0:0,0,91,79
chr1	1288823	.	A	G	1872.67	PASS	AC=2;AF=0.943;AN=2;DP=2808;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,49:50:99:1627,116,0:1,0,18,31
chr1	1289367	.	CTG	C	5486.53	PASS	AC=2;AF=0.955;AN=2;DP=6386;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:6486,437,0:0,0,79,66
chr1	1289911	.	G	A	3232.35	PASS	AC=2;AF=0.955;AN=2;DP=4335;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,84:85:99:2981,213,0:1,0,20,64
chr1	1290609	.	G	A	944.09	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=1.19;FractionInformativeReads=1;MQ=60;MQRankSum=1.3;QD=16.86;ReadPosRankSum=3.027;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,43:56:99:972,0,167:8,5,24,19
chr1	1293764	.	G	C	3070.36	PASS	AC=1;AF=0.849;AN=2;DP=3582;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:714,0,864:20,16,17,9
chr1	1296691	.	C	G	4222.45	PASS	AC=2;AF=1;AN=2;DP=9751;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:6403,617,0:0,0,90,116
chr1	1296818	.	C	G	5665.68	PASS	AC=2;AF=1;AN=2;DP=7155;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4448,447,0:0,0,81,68
chr1	1297059	.	G	A	2773.48	PASS	AC=1;AF=0.886;AN=2;DP=4188;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:29,37:66:99:1024,0,742:16,13,17,20
chr1	1297213	.	G	C	1020.73	PASS	AC=2;AF=0.953;AN=2;DP=1278;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1475,99,0:0,0,11,22
chr1	1297216	.	A	G	1020.73	PASS	AC=2;AF=0.977;AN=2;DP=1229;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1440,96,0:0,0,11,21
chr1	1308982	.	A	G	419.64	PASS	AC=2;AF=1;AN=2;DP=754;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:488,36,0:0,0,10,2
chr1	1309885	.	A	G	1053.84	PASS	AC=1;AF=0.5;AN=2;DP=717;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant23-variant25-variant27-variant28-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,42:77:99:1147,0,782:15,20,21,21
chr1	1310074	.	C	G	4492.16	PASS	AC=2;AF=0.953;AN=2;DP=7252;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4120,414,0:0,0,71,67
chr1	1310668	.	A	C	4234.61	PASS	AC=2;AF=0.953;AN=2;DP=6175;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4151,408,0:0,0,73,63
chr1	1310924	.	T	C	1241.86	PASS	AC=2;AF=1;AN=2;DP=1794;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1527,132,0:0,0,9,35
chr1	1310975	.	C	T	481.88	PASS	AC=2;AF=0.953;AN=2;DP=650;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:537,45,0:0,0,2,13
chr1	1323078	.	A	G	1444.77	PASS	AC=1;AF=0.849;AN=2;DP=2565;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,27:52:99:743,0,638:12,13,9,18
chr1	1323143	.	CCT	C	1128.68	PASS	AC=1;AF=0.849;AN=2;DP=1925;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:777,0,843:13,8,10,10
chr1	1323945	.	GTC	G,GTCTC	536.31	PASS	AC=2,0;AF=0.795,0.045;AN=2;DP=2179;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:34:99:0,0,17,17
chr1	1330726	.	A	G	893.46	PASS	AC=1;AF=0.536;AN=2;DP=578;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant14-variant15-variant23-variant25-variant26-variant27-variant28-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:435,0,555:15,6,11,5
chr1	1330959	.	C	T	248.81	PASS	AC=1;AF=0.5;AN=2;DP=40;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:277,0,219:0,6,3,7
chr1	1333827	.	AG	A	495.79	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=1.129;FractionInformativeReads=0.96;MQ=60;MQRankSum=-1.663;QD=9.92;ReadPosRankSum=0.91;SOR=0.955;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:533,0,754:13,15,8,12
chr1	1334943	.	T	A	4598.25	PASS	AC=1;AF=0.5;AN=2;DP=434;FS=2.447;FractionInformativeReads=1;MQ=60;MQRankSum=1.812;QD=10.6;ReadPosRankSum=-1.258;SOR=0.537;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:238,196:434:99:4626,0,5670:134,104,102,94
chr1	1335790	.	A	G	2153.31	PASS	AC=1;AF=0.536;AN=2;DP=1968;MQ=60;set=variant8-variant11-variant14-variant15-variant23-variant25-variant26-variant27-variant28-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,60:130:99:1708,0,1942:33,37,26,34
chr1	1342394	.	G	A	4709.99	PASS	AC=1;AF=0.5;AN=2;DP=1057;MQ=60;set=variant10-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:159,132:291:99:2829,0,3765:86,73,66,66
chr1	1354515	.	C	G	2365.61	PASS	AC=1;AF=0.571;AN=2;DP=1828;MQ=60;set=variant8-variant11-variant14-variant26-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:114,104:218:99:2416,0,2832:51,63,49,55
chr1	1356550	.	A	G	794.06	PASS	AC=1;AF=0.5;AN=2;DP=423;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant14-variant26-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,32:62:99:846,0,708:14,16,15,17
chr1	1361555	.	T	C	774.01	PASS	AC=1;AF=0.643;AN=2;DP=509;FractionInformativeReads=1;MQ=60;set=variant14-variant23-variant26-variant32-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,26:64:99:650,0,922:16,22,10,16
chr1	1361641	.	C	T	471.25	PASS	AC=1;AF=0.577;AN=2;DP=559;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant17-variant23-variant26-variant27-variant28-variant33-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,10:38:99:206,0,764:10,18,4,6
chr1	1361736	.	G	A	649.59	PASS	AC=1;AF=0.5;AN=2;DP=68;FractionInformativeReads=1;MQ=60;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:323,0,496:8,11,8,5
chr1	1363372	.	G	A	51.49	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.026;QD=12.87;ReadPosRankSum=1.026;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:69:80,0,69:1,1,0,2
chr1	1363375	.	A	G	51.49	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.026;QD=12.87;ReadPosRankSum=1.026;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:69:80,0,69:1,1,0,2
chr1	1371074	.	C	CCGAG,CCGAGCGAG	2077.85	PASS	AC=0,1;AF=0.167,0.333;AN=2;DP=588;MQ=60;set=variant14-variant29-variant41	GT:DP:GQ:SB	0/2:183:99:52,45,43,43
chr1	1374834	.	A	G	535.53	PASS	AC=1;AF=0.536;AN=2;DP=786;MQ=60;set=variant13-variant14-variant15-variant17-variant23-variant26-variant27-variant28-variant33-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,23:62:99:478,0,1059:14,25,9,14
chr1	1375185	.	G	C	81.24	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant23-variant27-variant28-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:69:69,0,81:2,2,1,1
chr1	1375390	.	C	T	752.66	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.301;QD=13.2;ReadPosRankSum=1.586;SOR=0.577;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,34:57:99:781,0,614:15,8,21,13
chr1	1375810	.	C	G	1548.31	PASS	AC=1;AF=0.536;AN=2;DP=1517;FractionInformativeReads=1;MQ=60;set=variant7-variant13-variant14-variant15-variant17-variant23-variant26-variant27-variant28-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,33:86:99:870,0,1456:26,27,15,18
chr1	1376214	.	C	G	983.49	PASS	AC=1;AF=0.533;AN=2;DP=966;MQ=60;set=variant7-variant13-variant14-variant15-variant17-variant23-variant26-variant27-variant28-variant33-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,52:79:99:1344,0,649:13,14,28,24
chr1	1376567	.	A	G	1087.51	PASS	AC=1;AF=0.538;AN=2;DP=1927;MQ=60;set=variant13-variant14-variant15-variant17-variant23-variant26-variant27-variant28-variant33-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,68:132:99:1660,0,1513:32,32,31,37
chr1	1376779	.	A	G	1764.54	PASS	AC=1;AF=0.5;AN=2;DP=149;FS=0.604;FractionInformativeReads=1;MQ=60;MQRankSum=1.475;QD=11.84;ReadPosRankSum=-0.832;SOR=0.754;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,69:149:99:1793,0,2116:44,36,39,30
chr1	1377042	.	C	G	1787.89	PASS	AC=1;AF=0.5;AN=2;DP=154;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.261;QD=11.61;ReadPosRankSum=-1.13;SOR=0.655;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:87,67:154:99:1816,0,2353:45,42,34,33
chr1	1377997	.	C	G	1215.43	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=3.809;FractionInformativeReads=1;MQ=60;MQRankSum=-1.751;QD=12.93;ReadPosRankSum=0.057;SOR=1.085;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,46:94:99:1244,0,1167:24,24,19,27
chr1	1378102	.	A	G	736.21	PASS	AC=1;AF=0.571;AN=2;DP=490;FractionInformativeReads=1;MQ=60;set=variant14-variant26-variant30-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,42:77:99:1188,0,775:16,19,17,25
chr1	1385211	.	A	G	120.91	PASS	AC=1;AF=0.536;AN=2;DP=307;FractionInformativeReads=1;MQ=60;set=variant7-variant13-variant14-variant16-variant17-variant26-filterInvariant27-variant28-variant33-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:348,0,239:7,4,8,4
chr1	1387667	.	C	G	14727.4	PASS	AC=2;AF=1;AN=2;DP=24153;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,467:467:99:14184,1398,0:0,0,240,227
chr1	1389695	.	C	T	481.29	PASS	AC=1;AF=0.559;AN=2;DP=753;set=variant5-variant7-variant13-variant14-variant16-variant17-variant19-variant26-variant27-variant28-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:581,0,735:19,6,14,8
chr1	1389959	.	T	C	78.73	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=90;FS=12.811;FractionInformativeReads=1;MQ=58.33;MQRankSum=-4.882;QD=0.87;ReadPosRankSum=-2.609;SOR=3.396;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:81,9:90:99:107,0,4774:28,53,0,9
chr1	1389961	.	T	C	78.73	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=87;FS=7.674;FractionInformativeReads=1;MQ=58.56;MQRankSum=-4.079;QD=0.9;ReadPosRankSum=1.265;SOR=2.717;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:81,6:87:99:107,0,4774:28,53,0,6
chr1	1390056	.	T	A	83.39	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=59.19;MQRankSum=-1.654;QD=4.17;ReadPosRankSum=0.236;SOR=0.283;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,4:20:99:112,0,562:3,13,1,3
chr1	1390997	.	T	G	2940.64	PASS	AC=1;AF=0.559;AN=2;DP=3359;set=variant5-variant7-variant13-variant14-variant16-variant17-variant19-variant26-variant27-variant28-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,80:182:99:2067,0,2383:45,57,36,44
chr1	1392726	.	G	A	291.9	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=11.124;FractionInformativeReads=1;MQ=60;MQRankSum=1.195;QD=7.68;ReadPosRankSum=-0.772;SOR=0.046;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:320,0,870:2,22,5,9
chr1	1395281	.	C	T	1919.47	PASS	AC=1;AF=0.5;AN=2;DP=284;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:76,73:149:99:1948,0,1805:41,35,41,32
chr1	1395401	.	C	CTG	1369.74	PASS	AC=1;AF=0.611;AN=2;DP=671;set=variant-variant7-variant13-variant14-variant16-variant17-variant24-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,44:79:99:1742,0,1460:9,26,12,32
chr1	1395402	.	CAG	C	1369.74	PASS	AC=1;AF=0.611;AN=2;DP=649;set=variant-variant7-variant13-variant14-variant16-variant17-variant24-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,43:78:99:1742,0,1460:9,26,11,32
chr1	1395449	.	ATTT	ATT,AT,ATTTT,A	36.35	PASS	AC=0,1,0,0;AF=0.379,0.061,0.045,0.03;AN=2;DP=1249;set=filterInvariant-variant2-filterInvariant3-variant5-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant19-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-filterInvariant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:15:99:1,5,0,9
chr1	1403693	.	A	G	479.91	PASS	AC=1;AF=0.5;AN=2;DP=74;FractionInformativeReads=1;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:587,0,739:19,1,15,1
chr1	1403887	.	G	A	3151.18	PASS	AC=1;AF=0.5;AN=2;DP=277;FS=0.436;FractionInformativeReads=1;MQ=57.97;MQRankSum=-3.707;QD=11.38;ReadPosRankSum=0.517;SOR=0.655;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:141,136:277:99:3179,0,3424:66,75,65,71
chr1	1404016	.	G	A	2602.21	PASS	AC=1;AF=0.5;AN=2;DP=415;FractionInformativeReads=1;set=variant13-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,60:111:99:1620,0,1387:22,29,23,37
chr1	1404746	.	C	A	43.74	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.72;QD=7.29;ReadPosRankSum=1.38;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,123:3,1,2,0
chr1	1404809	.	A	G	130.73	PASS	AC=1;AF=0.643;AN=2;DP=38;FractionInformativeReads=1;MQ=60;set=variant7-variant14-variant24-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:101,0,120:3,1,3,0
chr1	1407043	.	A	C	2115.91	PASS	AC=1;AF=0.5;AN=2;DP=494;MQ=60;set=variant14-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,100:168:99:2446,0,1468:38,30,62,38
chr1	1407372	.	T	C	991.54	PASS	AC=1;AF=0.553;AN=2;DP=1119;set=variant4-variant5-variant6-variant7-variant13-variant14-variant16-variant17-variant19-variant26-variant27-variant28-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:632,0,510:9,16,7,16
chr1	1416370	.	T	C	130.43	PASS	AC=1;AF=0.571;AN=2;DP=255;FractionInformativeReads=1;set=variant10-variant13-variant14-variant18-variant21-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,11:56:99:260,0,1342:14,31,0,11
chr1	1417649	.	T	G	50.14	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=123;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:50,7:57:76:76,0,1455:20,30,1,6
chr1	1417696	.	C	G	195.72	PASS	AC=2;AF=0.756;AN=2;DP=3051;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1364,117,0:0,0,24,15
chr1	1417782	.	A	G	309.06	PASS	AC=1;AF=0.583;AN=2;DP=1534;FractionInformativeReads=1;set=variant5-variant7-variant13-variant14-variant16-variant19-filterInvariant22-variant26-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:98,30:128:99:524,0,2764:60,38,22,8
chr1	1418004	.	T	C	1523.28	PASS	AC=1;AF=0.6;AN=2;DP=1331;FractionInformativeReads=1;set=variant7-variant13-variant14-variant16-variant22-variant26-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,66:122:99:1713,0,1527:22,34,32,34
chr1	1418396	.	A	G	346.01	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=4.677;FractionInformativeReads=1;MQ=60;MQRankSum=0.606;QD=8.87;ReadPosRankSum=0.099;SOR=1.044;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:374,0,538:12,9,7,11
chr1	1418531	.	G	A	64.78	PASS	AC=2;AF=1;AN=2;DP=176;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:22:261,22,0:0,0,1,7
chr1	1420366	.	C	T	473.45	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=3.36;FractionInformativeReads=1;MQ=38.18;MQRankSum=-0.72;QD=12.8;ReadPosRankSum=0.322;SOR=0.252;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,21:37:99:502,0,491:13,3,14,7
chr1	1420662	.	A	G	31.1	PASS	AC=1;AF=0.5;AN=2;DP=855;set=filterInvariant7-variant13-variant14-filterInvariant16-filterInvariant34-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,39:87:99:1048,0,1273:17,31,13,26
chr1	1421411	.	C	T	2907.31	PASS	AC=1;AF=0.5;AN=2;DP=230;FS=1.597;FractionInformativeReads=1;MQ=60;MQRankSum=1.374;QD=12.64;ReadPosRankSum=2.431;SOR=0.584;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:111,119:230:99:2936,0,3019:49,62,56,63
chr1	1421531	.	C	A	3186.31	PASS	AC=1;AF=0.556;AN=2;DP=2635;set=variant13-variant14-variant16-variant22-variant26-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:160,128:288:99:3165,0,3990:73,87,59,69
chr1	1421991	.	G	A	1786.59	PASS	AC=1;AF=0.5;AN=2;DP=1238;set=variant7-variant13-variant16-variant22-variant26-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,66:123:99:2006,0,1662:13,44,13,53
chr1	1423267	.	A	G	1986.97	PASS	AC=1;AF=0.6;AN=2;DP=1429;set=variant7-variant13-variant14-variant16-variant22-variant26-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,77:146:99:1902,0,1676:37,32,43,34
chr1	1425490	.	T	C	317.36	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=3.274;FractionInformativeReads=1;MQ=60;MQRankSum=-0.241;QD=18.67;ReadPosRankSum=1.01;SOR=1.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:346,0,306:7,1,9,0
chr1	1425700	.	T	C	2923.27	PASS	AC=1;AF=0.6;AN=2;DP=2361;MQ=60;set=variant7-variant13-variant14-variant16-variant22-variant26-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:147,104:251:99:2378,0,3638:75,72,56,48
chr1	1430971	.	C	T	1550.69	PASS	AC=1;AF=0.5;AN=2;DP=164;FS=4.598;FractionInformativeReads=1;MQ=60;MQRankSum=-0.13;QD=9.46;ReadPosRankSum=2.265;SOR=0.832;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:95,69:164:99:1579,0,2435:50,45,31,38
chr1	1431109	.	G	A	2507.21	PASS	AC=1;AF=0.5;AN=2;DP=275;FS=0.465;FractionInformativeReads=1;MQ=58.54;MQRankSum=0.762;QD=9.12;ReadPosRankSum=-3.328;SOR=0.633;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:171,104:275:99:2535,0,4789:106,65,63,41
chr1	1431165	.	C	T	794.56	PASS	AC=1;AF=0.5;AN=2;DP=6899;set=filterInvariant4-variant6-variant8-filterInvariant10-filterInvariant11-filterInvariant13-variant14-variant16-variant17-variant20-variant22-variant26-variant27-variant28-filterInvariant33-variant34-variant38-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:329,73:402:99:624,0,8860:179,150,38,35
chr1	1431408	.	A	AG	904.67	PASS	AC=1;AF=0.5;AN=2;DP=88;FS=0;FractionInformativeReads=0.875;MQ=60;MQRankSum=0.464;QD=10.28;ReadPosRankSum=-0.076;SOR=0.733;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,39:77:99:942,0,928:14,24,14,25
chr1	1444500	.	T	C	38.26	PASS	AC=1;AF=0.5;AN=2;DP=372;FractionInformativeReads=1;set=filterInvariant3-filterInvariant8-variant13-variant14-filterInvariant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,11:53:99:138,0,1377:35,7,7,4
chr1	1444542	.	G	T	126.57	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=357;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:86,16:102:60:60,0,2455:58,28,8,8
chr1	1444593	.	G	A	1769.14	PASS	AC=1;AF=0.5;AN=2;DP=171;FS=0;FractionInformativeReads=1;MQ=53.11;MQRankSum=1.123;QD=10.35;ReadPosRankSum=3.36;SOR=0.725;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,79:171:99:1797,0,2266:54,38,47,32
chr1	1447756	.	G	C	464.5	PASS	AC=1;AF=0.571;AN=2;DP=738;FractionInformativeReads=1;set=variant5-variant7-variant13-variant14-variant16-variant19-variant22-variant26-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:492,0,745:10,20,7,14
chr1	1451223	.	T	G	1055.78	PASS	AC=1;AF=0.5;AN=2;DP=118;FS=2.993;FractionInformativeReads=1;MQ=51.09;MQRankSum=-5.725;QD=8.95;ReadPosRankSum=-1.638;SOR=1.029;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:76,42:118:99:1084,0,2181:57,19,34,8
chr1	1451380	.	T	C	5014.27	PASS	AC=1;AF=0.575;AN=2;DP=10337;set=variant-variant3-variant4-variant5-variant7-variant8-variant13-variant14-variant16-variant19-variant22-variant26-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:261,232:493:99:5223,0,6314:126,135,116,116
chr1	1451489	.	T	C	2572.95	PASS	AC=1;AF=0.5;AN=2;DP=1427;set=variant13-variant14-variant16-variant26-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:88,81:169:99:3122,0,4679:29,59,24,57
chr1	1451490	.	G	A	2572.95	PASS	AC=1;AF=0.5;AN=2;DP=1406;set=variant13-variant14-variant16-variant26-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:89,81:170:99:3122,0,4679:29,60,24,57
chr1	1455386	.	CGTGGCATGGGCCTGTCT	C	646.56	PASS	AC=1;AF=0.5;AN=2;DP=304;set=variant14-variant26-variant34-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,11:50:99:345,0,2041:31,8,7,4
chr1	1455477	.	C	T	516.69	PASS	AC=1;AF=0.5;AN=2;DP=634;set=variant14-variant26-variant34-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:94,20:114:99:308,0,2760:52,42,9,11
chr1	1455698	.	C	T	1217.38	PASS	AC=1;AF=0.5;AN=2;DP=149;FS=0;FractionInformativeReads=1;MQ=53.19;MQRankSum=2.026;QD=8.17;ReadPosRankSum=0.062;SOR=0.686;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:98,51:149:99:1246,0,2755:46,52,24,27
chr1	1456039	.	G	A	994.42	PASS	AC=1;AF=0.5;AN=2;DP=81;FS=0;FractionInformativeReads=0.988;MQ=59.11;MQRankSum=-3.003;QD=12.28;ReadPosRankSum=-3.68;SOR=0.641;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,36:80:99:1023,0,1245:13,31,11,25
chr1	1458032	.	C	T	632.06	PASS	AC=1;AF=0.5;AN=2;DP=330;set=variant14-variant26-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,37:62:99:927,0,675:18,7,27,10
chr1	1458285	.	A	G	634.78	PASS	AC=1;AF=0.5;AN=2;DP=1352;set=variant13-variant14-variant16-variant26-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:72,58:130:99:1376,0,1751:34,38,22,36
chr1	1458402	.	A	G	537.01	PASS	AC=1;AF=0.5;AN=2;DP=165;FractionInformativeReads=1;set=variant22-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:44,6:50:82:82,0,1129:17,27,1,5
chr1	1459582	.	G	A	1660.14	PASS	AC=1;AF=0.5;AN=2;DP=2510;set=variant13-variant14-variant16-variant26-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:151,142:293:99:3455,0,3622:96,55,91,51
chr1	1462766	.	C	T	321.99	PASS	AC=1;AF=0.5;AN=2;DP=372;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant16-variant26-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:531,0,567:5,15,7,14
chr1	1469263	.	G	T	507.88	PASS	AC=1;AF=0.5;AN=2;DP=617;FractionInformativeReads=1;set=variant13-variant14-variant15-variant16-variant23-variant26-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,8:43:99:120,0,993:25,10,8,0
chr1	1469289	.	G	C	679.1	PASS	AC=1;AF=0.6;AN=2;DP=2108;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant19-variant20-variant22-variant24-variant31-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,27:83:99:665,0,1424:35,21,21,6
chr1	1469546	.	G	A	786.13	PASS	AC=2;AF=0.767;AN=2;DP=5039;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2217,196,0:0,0,23,43
chr1	1469598	.	C	G	796.3	PASS	AC=2;AF=0.672;AN=2;DP=3457;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant13-filterInvariant14-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-filterInvariant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:2212,156,0:0,0,24,24
chr1	1469599	.	G	C	796.22	PASS	AC=2;AF=0.672;AN=2;DP=3506;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant13-filterInvariant14-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-filterInvariant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:2212,156,0:0,0,24,23
chr1	1469606	.	C	T	639.91	PASS	AC=1;AF=0.525;AN=2;DP=2168;set=variant4-variant6-variant8-variant9-variant10-variant11-variant13-filterInvariant14-variant16-variant17-variant20-variant22-variant26-variant27-variant28-variant33-variant34-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:697,0,1007:17,13,13,11
chr1	1477244	.	T	C	1477.82	PASS	AC=2;AF=0.577;AN=2;DP=2180;MQ=60;set=variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2314,195,0:0,0,42,23
chr1	1477660	.	A	G	340.83	PASS	AC=1;AF=0.5;AN=2;DP=58;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:369,0,540:2,14,4,10
chr1	1479333	.	A	G	808.99	PASS	AC=2;AF=0.577;AN=2;DP=2175;MQ=60;set=variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2742,270,0:0,0,46,44
chr1	1480085	.	G	T	904.76	PASS	AC=1;AF=0.5;AN=2;DP=165;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,40:81:99:933,0,1200:30,11,25,15
chr1	1480985	.	C	T	233.54	PASS	AC=2;AF=1;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;QD=32.16;SOR=3.912;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:262,18,0:0,0,0,6
chr1	1481175	.	C	A	448.33	PASS	AC=2;AF=0.591;AN=2;DP=513;FractionInformativeReads=1;set=variant4-variant6-variant8-variant10-variant11-variant14-variant15-variant17-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:537,45,0:0,0,11,4
chr1	1481348	.	T	C	356.04	PASS	AC=1;AF=0.523;AN=2;DP=1033;MQ=60;set=variant4-variant5-variant6-variant8-variant10-variant11-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant28-variant29-variant30-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,15:47:99:351,0,837:14,18,7,8
chr1	1497641	.	TTTTC	T	109.68	PASS	AC=2;AF=0.583;AN=2;DP=324;MQ=60;set=variant4-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:495,33,0:0,0,9,2
chr1	1499298	.	A	G	363.97	PASS	AC=2;AF=0.593;AN=2;DP=807;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:704,69,0:0,0,14,9
chr1	1499607	.	G	A	844.83	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=2.322;FractionInformativeReads=1;MQ=60;MQRankSum=0.301;QD=14.82;ReadPosRankSum=3.099;SOR=0.402;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,34:57:99:873,0,616:15,8,19,15
chr1	1509825	.	A	G	2603.23	PASS	AC=2;AF=0.596;AN=2;DP=4730;MQ=60;set=variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5356,533,0:0,0,100,78
chr1	1510035	.	GGC	G	1281.93	PASS	AC=2;AF=0.596;AN=2;DP=1836;MQ=60;set=variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:3036,205,0:0,0,18,50
chr1	1510801	.	C	T	163.81	PASS	AC=2;AF=0.596;AN=2;DP=476;MQ=60;set=variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1134,99,0:0,0,8,25
chr1	1533479	.	C	G	931	PASS	AC=1;AF=0.5;AN=2;DP=157;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,37:76:99:959,0,1088:22,17,20,17
chr1	1550702	.	A	G	1419.51	PASS	AC=1;AF=0.756;AN=2;DP=1476;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:552,0,400:8,8,9,13
chr1	1551249	.	C	T	755.59	PASS	AC=1;AF=0.756;AN=2;DP=759;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,15:22:99:436,0,210:5,2,8,7
chr1	1551927	.	T	C	3368.42	PASS	AC=1;AF=0.75;AN=2;DP=4423;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,65:132:99:1491,0,1704:33,34,33,32
chr1	1558792	.	T	C	2624.05	PASS	AC=2;AF=0.966;AN=2;DP=4846;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3079,285,0:0,0,56,39
chr1	1559971	.	C	T	304.44	PASS	AC=2;AF=0.966;AN=2;DP=671;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:539,45,0:0,0,12,3
chr1	1562437	.	C	G	2896.53	PASS	AC=2;AF=0.625;AN=2;DP=3221;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant11-variant13-variant15-variant18-variant19-variant23-variant25-variant26-variant32-variant34-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:5306,450,0:0,0,55,95
chr1	1563718	.	C	G	2716.25	PASS	AC=1;AF=0.5;AN=2;DP=214;FS=1.056;FractionInformativeReads=1;MQ=60;MQRankSum=-1.816;QD=12.69;ReadPosRankSum=1.864;SOR=0.607;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:114,100:214:99:2744,0,3103:51,63,47,53
chr1	1565942	.	C	G	4272.1	PASS	AC=1;AF=0.5;AN=2;DP=304;FS=2.048;FractionInformativeReads=1;MQ=60;MQRankSum=3.546;QD=14.05;ReadPosRankSum=-0.039;SOR=0.84;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:151,153:304:99:4300,0,4278:51,100,47,106
chr1	1566068	.	A	G	791.3	PASS	AC=2;AF=0.841;AN=2;DP=1734;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:3,33:36:31:807,31,0:0,3,6,27
chr1	1571829	.	A	G	554.6	PASS	AC=1;AF=0.5;AN=2;DP=873;set=variant-variant28-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:179,31:210:99:578,0,8666:91,88,10,21
chr1	1571841	.	A	C	496.02	PASS	AC=1;AF=0.5;AN=2;DP=822;set=variant-variant28-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:167,22:189:99:455,0,8549:82,85,5,17
chr1	1573078	.	A	G	457.25	PASS	AC=1;AF=0.5;AN=2;DP=188;FractionInformativeReads=1;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:68,23:91:99:485,0,1831:42,26,17,6
chr1	1573811	.	A	G	56.46	PASS	AC=1;AF=0.5;AN=2;DP=100;FractionInformativeReads=1;set=filterInvariant-filterInvariant34-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,27:35:99:605,0,129:4,4,13,14
chr1	1575616	.	T	C	1989.91	PASS	AC=2;AF=0.977;AN=2;DP=2881;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1660,162,0:0,0,46,8
chr1	1576325	.	T	C	35.29	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=2;FS=0;FractionInformativeReads=1;MQ=27.07;QD=17.65;SOR=2.303;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:64,6,0:0,0,2,0
chr1	1580738	.	T	A	148	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=8719;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:154,47:201:99:655,0,3541:52,102,17,30
chr1	1580778	.	C	A	212.72	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=41;FS=1.811;FractionInformativeReads=1;MQ=28.43;MQRankSum=0.686;QD=5.19;ReadPosRankSum=-1.751;SOR=0.264;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:28,13:41:99:241,0,705:4,24,3,10
chr1	1581319	.	C	G	143.37	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=6.107;FractionInformativeReads=1;MQ=56.52;MQRankSum=2.808;QD=7.96;ReadPosRankSum=-0.906;SOR=0.05;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:172,0,363:10,1,4,3
chr1	1581586	.	T	C	455.93	PASS	AC=2;AF=0.988;AN=2;DP=360;FS=0;MQRankSum=-2.857;ReadPosRankSum=-0.328;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-filterInvariant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:665,48,0:0,0,9,7
chr1	1581699	.	A	G	301.45	PASS	AC=2;AF=0.75;AN=2;DP=94;FractionInformativeReads=1;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	1/1:4,57:61:41:1879,41,0:4,0,38,19
chr1	1581759	.	G	A	83.67	PASS	AC=1;AF=0.5;AN=2;DP=4743;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-filterInvariant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,20:119:99:361,0,2854:57,42,16,4
chr1	1581889	.	CGTA	C	963.93	PASS	AC=1;AF=0.5;AN=2;DP=239;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,70:124:99:2757,0,2214:26,28,26,44
chr1	1582106	.	T	C	2887.64	PASS	AC=2;AF=0.977;AN=2;DP=5193;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3559,371,0:0,0,77,47
chr1	1582198	.	C	G	657.14	PASS	AC=1;AF=0.5;AN=2;DP=238;FS=2.742;FractionInformativeReads=1;MQ=41.1;MQRankSum=-0.335;QD=2.76;ReadPosRankSum=-2.255;SOR=0.591;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:187,51:238:99:685,0,7382:101,86,25,26
chr1	1582202	.	C	T	940.35	PASS	AC=1;AF=0.5;AN=2;DP=9587;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,121:233:99:3489,0,2414:59,53,60,61
chr1	1582794	.	C	A	171.06	PASS	AC=1;AF=0.955;AN=2;DP=669;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:257,0,631:15,4,9,1
chr1	1582841	.	A	G	379.63	PASS	AC=1;AF=0.5;AN=2;DP=613;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,8:32:99:263,0,1148:15,9,7,1
chr1	1582844	.	G	T	379.63	PASS	AC=1;AF=0.5;AN=2;DP=611;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-filterInvariant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,8:32:99:263,0,1148:15,9,7,1
chr1	1582880	.	G	C	38.35	PASS	AC=1;AF=0.5;AN=2;DP=2018;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,16:68:99:260,0,1334:30,22,11,5
chr1	1583003	.	C	T	36.46	PASS	AC=1;AF=0.5;AN=2;DP=6943;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,55:167:99:1386,0,2699:63,49,23,32
chr1	1583013	.	A	G	66.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=161;FS=0.867;FractionInformativeReads=0.994;MQ=41.26;MQRankSum=-3.674;QD=0.41;ReadPosRankSum=-0.439;SOR=0.851;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:138,22:160:95:95,0,6036:70,68,10,12
chr1	1583654	.	G	A	350.65	PASS	AC=2;AF=0.75;AN=2;DP=85;MQRankSum=4.607;ReadPosRankSum=1.359;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1800,156,0:0,0,11,41
chr1	1586752	.	T	C	2340.97	PASS	AC=2;AF=0.989;AN=2;DP=3123;MQRankSum=1.009;ReadPosRankSum=1.492;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2148,192,0:0,0,42,22
chr1	1588670	.	G	A	98.08	PASS	AC=1;AF=0.5;AN=2;DP=3214;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,16:82:99:301,0,1769:44,22,11,5
chr1	1588717	.	G	A	59.09	PASS	AC=1;AF=0.5;AN=2;DP=4516;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant9-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-variant30-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,23:128:99:377,0,2834:65,40,15,8
chr1	1588737	.	C	T	282.57	PASS	AC=1;AF=0.5;AN=2;DP=5037;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,25:139:99:701,0,4822:64,50,16,9
chr1	1588743	.	A	T	276.52	PASS	AC=1;AF=0.5;AN=2;DP=5130;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,26:144:99:734,0,4948:66,52,17,9
chr1	1588744	.	AGCG	A	261.54	PASS	AC=1;AF=0.5;AN=2;DP=5231;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,26:148:99:722,0,5090:70,52,17,9
chr1	1591401	.	A	C	137.19	PASS	AC=1;AF=0.5;AN=2;DP=238;FractionInformativeReads=1;set=variant-filterInvariant4-variant7-filterInvariant8-filterInvariant13-filterInvariant20-filterInvariant21-filterInvariant23-variant24-filterInvariant29-filterInvariant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:285,0,242:7,3,10,1
chr1	1591732	.	T	C	85.47	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=28.59;MQRankSum=0.244;QD=7.12;ReadPosRankSum=-0.689;SOR=0.941;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:114,0,180:2,5,1,4
chr1	1595867	.	C	A	1455.21	PASS	AC=2;AF=1;AN=2;DP=4128;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,118:119:99:3328,346,0:1,0,61,57
chr1	1596974	.	C	T	3788.7	PASS	AC=2;AF=0.989;AN=2;DP=5315;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3533,343,0:0,0,53,62
chr1	1599888	.	A	G	2767.6	PASS	AC=2;AF=0.568;AN=2;DP=5891;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2718,243,0:0,0,57,24
chr1	1601145	.	G	A	1364.19	PASS	AC=2;AF=1;AN=2;DP=42;FS=0;FractionInformativeReads=1;MQ=60;QD=32.48;SOR=1.259;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1392,126,0:0,0,26,16
chr1	1602787	.	G	T	1213.76	PASS	AC=2;AF=1;AN=2;DP=1683;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1111,105,0:0,0,22,13
chr1	1633003	.	C	CCG,CCGG	189.89	PASS	AC=0,2;AF=0.714,0.143;AN=2;DP=44;set=variant3-variant6-variant10-variant15-variant32-variant35-variant41	GT:DP:GQ:SB	2/2:2:6:0,0,2,0
chr1	1635004	.	T	C	1839.55	PASS	AC=2;AF=0.757;AN=2;DP=5897;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2668,261,0:0,0,47,40
chr1	1635407	.	A	G	2540.16	PASS	AC=1;AF=0.5;AN=2;DP=180;FS=1.163;FractionInformativeReads=0.994;MQ=58.79;MQRankSum=-5.526;QD=14.11;ReadPosRankSum=-0.004;SOR=0.67;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:83,96:179:99:2568,0,2390:43,40,47,49
chr1	1635619	.	T	C	6367.38	PASS	AC=2;AF=0.75;AN=2;DP=7889;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,225:225:99:6831,672,0:0,0,116,109
chr1	1635749	.	C	A	2329.6	PASS	AC=1;AF=0.7;AN=2;DP=6100;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,87:180:99:2359,0,2470:42,51,44,43
chr1	1636044	.	G	A	5047.46	PASS	AC=2;AF=0.75;AN=2;DP=12609;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-filterInvariant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,314:315:99:9783,932,0:0,1,126,188
chr1	1636400	.	G	C	489.42	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=34.246;FractionInformativeReads=1;MQ=49.44;MQRankSum=-4.058;QD=3.68;ReadPosRankSum=-2.999;SOR=3.914;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:109,24:133:99:518,0,2665:52,57,2,22
chr1	1638897	.	A	G	198.6	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=153;FS=0.822;FractionInformativeReads=1;MQ=44.35;MQRankSum=-3.364;QD=1.3;ReadPosRankSum=0.745;SOR=0.592;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:129,24:153:99:227,0,3475:68,61,12,12
chr1	1638994	.	C	T	1646.08	PASS	AC=2;AF=0.6;AN=2;DP=808;set=variant-variant28-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,177:177:99:4957,528,0:0,0,74,103
chr1	1639046	.	C	G	793.85	PASS	AC=2;AF=1;AN=2;DP=441;FS=0;FractionInformativeReads=1;set=variant-variant2-variant6-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant23-variant32-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4329,459,0:0,0,58,95
chr1	1639608	.	G	A	232.43	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=0;FractionInformativeReads=1;MQ=30.06;MQRankSum=-0.11;QD=6.84;ReadPosRankSum=0.074;SOR=0.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,11:34:99:261,0,605:9,14,5,6
chr1	1639612	.	T	C	45.57	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=32;FS=0;FractionInformativeReads=1;MQ=30.18;MQRankSum=-0.024;QD=1.42;ReadPosRankSum=-1.617;SOR=0.941;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:26,6:32:74:74,0,780:11,15,2,4
chr1	1639702	.	C	T	471.7	PASS	AC=2;AF=1;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=47.61;QD=26.21;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:500,54,0:0,0,11,7
chr1	1644908	.	C	T	422.34	PASS	AC=2;AF=0.955;AN=2;DP=966;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:735,66,0:0,0,7,15
chr1	1645050	.	C	T	248.72	PASS	AC=2;AF=0.974;AN=2;DP=412;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant11-variant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-variant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-variant30-variant31-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:149,15,0:0,0,1,4
chr1	1645838	.	CA	C	37.66	PASS	AC=2;AF=1;AN=2;DP=27;FS=0;FractionInformativeReads=1;set=variant7-variant12-variant14-variant16-variant17-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:75,6,0:0,0,2,0
chr1	1646074	.	A	G	151.77	PASS	AC=2;AF=0.825;AN=2;DP=79;FS=0;FractionInformativeReads=1;set=variant4-filterInvariant6-variant7-filterInvariant9-filterInvariant14-variant15-filterInvariant16-filterInvariant18-filterInvariant19-filterInvariant22-variant24-filterInvariant25-variant30-variant32-variant33-filterInvariant35-variant39-variant40-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr1	1646077	.	G	T	151.77	PASS	AC=2;AF=0.825;AN=2;DP=82;FS=0;FractionInformativeReads=1;set=variant4-filterInvariant6-variant7-filterInvariant9-filterInvariant14-variant15-filterInvariant16-filterInvariant18-filterInvariant19-filterInvariant22-variant24-filterInvariant25-variant30-variant32-variant33-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr1	1646113	.	G	C	102.81	PASS	AC=2;AF=0.852;AN=2;DP=118;FractionInformativeReads=1;set=variant3-variant4-variant7-filterInvariant9-variant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant18-filterInvariant19-variant20-variant21-filterInvariant22-variant24-variant27-variant29-variant30-variant31-filterInvariant32-variant33-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:110,9,0:0,0,3,0
chr1	1646231	.	T	C	40.54	PASS	AC=2;AF=0.952;AN=2;DP=575;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:630,42,0:0,0,14,0
chr1	1646236	.	C	T	40.54	PASS	AC=2;AF=0.942;AN=2;DP=702;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:51:765,51,0:0,0,15,1
chr1	1646246	.	A	G	262.76	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=41.9;MQRankSum=2.313;QD=10.95;ReadPosRankSum=-0.79;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:291,0,228:7,3,9,5
chr1	1646371	.	G	T	100.99	PASS	AC=2;AF=0.714;AN=2;DP=1304;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1071,101,0:0,0,11,23
chr1	1646426	.	C	T	200.42	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=2.447;FractionInformativeReads=1;MQ=45.68;MQRankSum=0.473;QD=12.53;ReadPosRankSum=-0.998;SOR=0.132;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:229,0,214:1,7,3,5
chr1	1646427	.	T	G	395.83	PASS	AC=2;AF=0.964;AN=2;DP=723;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:622,48,0:0,0,4,12
chr1	1646450	.	G	A	168.83	PASS	AC=2;AF=0.976;AN=2;DP=411;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:291,24,0:0,0,2,6
chr1	1646574	.	T	C	136.3	PASS	AC=2;AF=1;AN=2;DP=19;FS=0;FractionInformativeReads=1;set=variant7-filterInvariant9-variant14-variant19-variant20-variant23-variant27-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:121,9,0:0,0,0,3
chr1	1646657	.	T	C	198.68	PASS	AC=2;AF=0.985;AN=2;DP=155;FS=0;set=variant3-filterInvariant4-variant5-variant7-variant8-variant9-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant23-variant24-variant25-variant27-variant29-variant30-filterInvariant31-variant32-variant33-variant35-variant36-variant38-filterInvariant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:251,21,0:0,0,7,0
chr1	1646789	.	T	C	429.52	PASS	AC=2;AF=0.953;AN=2;DP=1616;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1554,156,0:0,0,33,19
chr1	1647722	.	G	T	1078.09	PASS	AC=1;AF=0.511;AN=2;DP=2553;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:50,31:81:99:1145,0,3118:41,9,29,2
chr1	1647725	.	G	A	1063.04	PASS	AC=1;AF=0.511;AN=2;DP=2745;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,32:85:99:1265,0,3233:43,10,29,3
chr1	1647726	.	T	G	1051	PASS	AC=1;AF=0.511;AN=2;DP=2799;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,32:85:99:1349,0,3227:43,10,29,3
chr1	1647729	.	C	T	1090	PASS	AC=1;AF=0.511;AN=2;DP=2995;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,36:92:99:1343,0,3360:46,10,32,4
chr1	1647730	.	A	G	1090	PASS	AC=1;AF=0.511;AN=2;DP=3071;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,36:92:99:1343,0,3360:46,10,32,4
chr1	1647745	.	G	A	1900.84	PASS	AC=1;AF=0.511;AN=2;DP=4407;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:78,53:131:99:2043,0,4080:57,21,41,12
chr1	1647753	.	C	T	2022.4	PASS	AC=1;AF=0.511;AN=2;DP=5070;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:93,60:153:99:2134,0,4372:66,27,45,15
chr1	1647778	.	C	G	2535.07	PASS	AC=1;AF=0.511;AN=2;DP=7411;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:122,91:213:99:2266,0,3315:81,41,62,29
chr1	1647814	.	T	C	3796.76	PASS	AC=1;AF=0.511;AN=2;DP=10746;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:175,132:307:99:3117,0,4421:105,70,78,54
chr1	1647871	.	T	C	4237.5	PASS	AC=1;AF=0.511;AN=2;DP=13363;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:207,151:358:99:5689,0,8166:96,111,69,82
chr1	1647873	.	G	T	1182.22	PASS	AC=1;AF=0.5;AN=2;DP=609;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:210,152:362:99:5689,0,8166:95,115,69,83
chr1	1647893	.	C	CTTTCTT	6300.47	PASS	AC=1;AF=0.511;AN=2;DP=12051;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:182,130:312:99:4801,0,7177:73,109,57,73
chr1	1647968	.	C	CAT	2494.68	PASS	AC=1;AF=0.511;AN=2;DP=5490;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:91,55:146:99:2001,0,3648:25,66,10,45
chr1	1647971	.	G	A	2343.37	PASS	AC=1;AF=0.511;AN=2;DP=4943;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:89,50:139:99:1907,0,3657:24,65,8,42
chr1	1647983	.	T	A	1606.07	PASS	AC=1;AF=0.511;AN=2;DP=3799;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:69,38:107:99:1294,0,2643:15,54,4,34
chr1	1647990	.	C	T	1302.97	PASS	AC=1;AF=0.511;AN=2;DP=3225;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,29:91:99:1071,0,2497:11,51,2,27
chr1	1648002	.	C	T	1117.93	PASS	AC=1;AF=0.511;AN=2;DP=2554;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:51,23:74:99:805,0,1760:7,44,2,21
chr1	1648018	.	C	T	652.33	PASS	AC=1;AF=0.511;AN=2;DP=1789;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,17:58:99:584,0,1506:3,38,1,16
chr1	1648027	.	T	C	966.69	PASS	AC=2;AF=0.955;AN=2;DP=1376;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1837,140,0:0,0,3,44
chr1	1650787	.	T	C	1683.71	PASS	AC=1;AF=0.511;AN=2;DP=3813;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:1069,0,1424:21,15,17,12
chr1	1650797	.	A	G	1999.66	PASS	AC=1;AF=0.511;AN=2;DP=4140;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:1377,0,1487:22,15,17,18
chr1	1650801	.	T	C	2015.38	PASS	AC=1;AF=0.511;AN=2;DP=4267;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:1355,0,1490:22,15,17,18
chr1	1650807	.	T	C	347.47	PASS	AC=1;AF=0.5;AN=2;DP=4385;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,38:77:99:1020,0,1510:20,19,23,15
chr1	1650832	.	A	G	1512.51	PASS	AC=1;AF=0.511;AN=2;DP=5041;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:49,46:95:99:1069,0,1213:28,21,24,22
chr1	1650845	.	G	A	397.67	PASS	AC=1;AF=0.5;AN=2;DP=5241;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,53:103:99:1331,0,1195:26,24,29,24
chr1	1650938	.	CGG	C	1725.69	PASS	AC=1;AF=0.511;AN=2;DP=4528;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,48:110:99:1829,0,3181:27,35,21,27
chr1	1650942	.	A	AAG	1722.69	PASS	AC=1;AF=0.511;AN=2;DP=4383;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,48:110:99:1871,0,3178:27,35,21,27
chr1	1650960	.	G	A	1134.99	PASS	AC=1;AF=0.511;AN=2;DP=3573;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:1520,0,2828:20,31,17,22
chr1	1650967	.	T	C	934.07	PASS	AC=1;AF=0.511;AN=2;DP=3282;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:49,38:87:99:1448,0,2666:19,30,17,21
chr1	1650969	.	T	C	277.15	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=1.058;FractionInformativeReads=0.988;MQ=60;MQRankSum=1.748;QD=3.26;ReadPosRankSum=1.236;SOR=0.934;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,17:84:99:305,0,2359:28,39,6,11
chr1	1650996	.	T	C	568.79	PASS	AC=1;AF=0.511;AN=2;DP=2222;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:37,23:60:99:790,0,1835:13,24,8,15
chr1	1651003	.	G	A	511.31	PASS	AC=1;AF=0.511;AN=2;DP=1956;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:30,19:49:99:723,0,1708:10,20,5,14
chr1	1653004	.	T	C	1033.93	PASS	AC=2;AF=0.953;AN=2;DP=4626;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2639,252,0:0,0,54,30
chr1	1653028	.	C	T	1345.1	PASS	AC=2;AF=0.953;AN=2;DP=5736;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3488,333,0:0,0,68,43
chr1	1654038	.	G	A	370.86	PASS	AC=2;AF=0.95;AN=2;DP=505;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:102,12,0:0,0,2,2
chr1	1654058	.	C	T	202.23	PASS	AC=2;AF=0.919;AN=2;DP=986;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,3,3
chr1	1654064	.	A	T	238.14	PASS	AC=2;AF=0.919;AN=2;DP=1096;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:27:397,27,0:0,0,5,3
chr1	1654065	.	AGCG	A	220.16	PASS	AC=2;AF=0.919;AN=2;DP=1137;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:397,27,0:0,0,6,3
chr1	1663605	.	A	G	283.53	PASS	AC=1;AF=0.938;AN=2;DP=221;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:73:133,0,73:1,1,3,1
chr1	1664018	.	G	A	1434.49	PASS	AC=1;AF=0.5;AN=2;DP=222;FractionInformativeReads=1;MQ=60;set=variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,43:98:99:1074,0,1532:22,33,16,27
chr1	1666303	.	T	C	1771.14	PASS	AC=1;AF=0.5;AN=2;DP=181;FS=0.55;FractionInformativeReads=1;MQ=56.89;MQRankSum=-3.327;QD=9.79;ReadPosRankSum=2.952;SOR=0.726;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:103,78:181:99:1799,0,2791:51,52,40,38
chr1	1669984	.	C	T	120.51	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=34.43;MQRankSum=0;QD=13.39;ReadPosRankSum=0.361;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:149,0,126:0,4,0,5
chr1	1670554	.	T	C	232.17	PASS	AC=1;AF=0.667;AN=2;DP=63;FS=0;FractionInformativeReads=1;set=variant5-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:495,0,488:4,13,3,13
chr1	1684347	.	C	CCCT	3716.21	PASS	AC=1;AF=0.606;AN=2;DP=7735;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:129,93:222:99:1785,0,4912:66,63,51,42
chr1	1685213	.	C	G	169.68	PASS	AC=1;AF=0.92;AN=2;DP=923;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:352,0,378:2,9,3,8
chr1	1685959	.	C	T	1410.76	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0.802;FractionInformativeReads=1;MQ=59.88;MQRankSum=-2.031;QD=15.01;ReadPosRankSum=1.055;SOR=0.552;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,46:94:99:1439,0,1398:31,17,28,18
chr1	1686769	.	G	A	1221.29	PASS	AC=1;AF=0.5;AN=2;DP=116;FS=0;FractionInformativeReads=1;MQ=59.82;MQRankSum=-0.152;QD=10.53;ReadPosRankSum=-0.733;SOR=0.666;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,54:116:99:1250,0,1446:36,26,31,23
chr1	1686943	.	T	C	936.39	PASS	AC=2;AF=0.676;AN=2;DP=1279;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1588,114,0:0,0,8,30
chr1	1686962	.	C	T	822.19	PASS	AC=1;AF=0.682;AN=2;DP=926;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:502,0,425:1,12,6,13
chr1	1687625	.	T	C	218.85	PASS	AC=1;AF=0.606;AN=2;DP=949;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:453,0,576:13,4,12,6
chr1	1688192	.	A	G	653.81	PASS	AC=1;AF=0.919;AN=2;DP=2704;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,33:83:99:863,0,1263:25,25,19,14
chr1	1688469	.	C	G	279.8	PASS	AC=1;AF=0.93;AN=2;DP=474;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:170,0,379:0,10,2,5
chr1	1688513	.	G	T	112.25	PASS	AC=1;AF=0.648;AN=2;DP=184;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:106,0,148:0,4,2,2
chr1	1688579	.	C	A	139.16	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=6.455;FractionInformativeReads=1;MQ=60;MQRankSum=-0.248;QD=15.46;ReadPosRankSum=-1.001;SOR=2.245;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:69:167,0,69:1,2,5,1
chr1	1689762	.	T	C	518.28	PASS	AC=1;AF=0.614;AN=2;DP=1423;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:564,0,533:15,9,16,8
chr1	1690126	.	A	AAC	124.67	PASS	AC=1;AF=0.92;AN=2;DP=685;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:226,0,147:0,4,0,6
chr1	1690544	.	T	C	1474.02	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=1.364;FractionInformativeReads=1;MQ=60;MQRankSum=1.971;QD=10.45;ReadPosRankSum=-2.498;SOR=0.879;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:79,62:141:99:1502,0,1861:45,34,38,24
chr1	1690715	.	GCACGGCTGTGGGTACTGCACGGAGAGGGCAGGGGGTGGCGTGAAGCTTGCAGGCACA	G	115	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=97;FS=11.66;FractionInformativeReads=1;MQ=60;MQRankSum=-3.248;QD=1.19;ReadPosRankSum=2.66;SOR=0.167;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:27,70:97:99:152,0,8250:7,20,33,37
chr1	1696659	.	A	G	116.32	PASS	AC=2;AF=0.932;AN=2;DP=686;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:772,63,0:0,0,18,3
chr1	1711414	.	A	G	271.56	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.876;QD=8.23;ReadPosRankSum=-3.042;SOR=0.602;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:300,0,463:10,9,7,7
chr1	1717242	.	CT	C	178.41	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=0.913;MQ=60;MQRankSum=-0.106;QD=7.76;ReadPosRankSum=0.035;SOR=0.569;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:216,0,234:4,7,4,6
chr1	1717899	.	C	T	472.53	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.311;QD=11.81;ReadPosRankSum=0.235;SOR=0.526;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:501,0,769:16,8,10,6
chr1	1747424	.	T	C	1165.81	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.811;QD=14.22;ReadPosRankSum=-0.27;SOR=0.778;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,45:82:99:1194,0,1012:13,24,15,30
chr1	1749202	.	C	T	710.27	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=3.493;FractionInformativeReads=1;MQ=60;MQRankSum=-0.736;QD=10.6;ReadPosRankSum=-1.402;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:739,0,1074:22,14,22,9
chr1	1770699	.	G	A	2696.34	PASS	AC=1;AF=0.5;AN=2;DP=239;FS=1.56;FractionInformativeReads=1;MQ=60;MQRankSum=0.132;QD=11.28;ReadPosRankSum=1.343;SOR=0.814;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:119,120:239:99:2725,0,2854:58,61,55,65
chr1	1770737	.	A	G	1988.85	PASS	AC=1;AF=0.5;AN=2;DP=188;FS=2.607;FractionInformativeReads=0.995;MQ=60;MQRankSum=-2.034;QD=10.58;ReadPosRankSum=0.897;SOR=0.921;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,88:187:99:2017,0,2400:41,58,32,56
chr1	1823366	.	C	T	1211.24	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=8.093;FractionInformativeReads=1;MQ=60;MQRankSum=-0.964;QD=15.94;ReadPosRankSum=-1.007;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,48:76:99:1239,0,651:9,19,24,24
chr1	1823524	.	G	C	541.37	PASS	AC=1;AF=0.522;AN=2;DP=875;MQ=60;set=variant-variant4-variant5-variant6-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant33-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:758,0,502:14,3,13,10
chr1	1823922	.	A	G	318.22	PASS	AC=2;AF=0.955;AN=2;DP=3831;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3067,282,0:0,0,45,49
chr1	1846461	.	C	T	530.79	PASS	AC=1;AF=0.579;AN=2;DP=1755;MQ=60;set=variant2-variant3-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,47:103:99:1309,0,1586:24,32,23,24
chr1	1846582	.	A	G	824.25	PASS	AC=2;AF=0.756;AN=2;DP=3632;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2832,237,0:0,0,36,43
chr1	1847856	.	G	T	1182.23	PASS	AC=1;AF=0.597;AN=2;DP=5715;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,70:124:99:1765,0,1348:34,20,44,26
chr1	1847979	.	T	C	1824.42	PASS	AC=1;AF=0.5;AN=2;DP=1052;MQ=60;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:103,86:189:99:2119,0,2613:57,46,39,47
chr1	1848109	.	G	C	1593.98	PASS	AC=1;AF=0.597;AN=2;DP=4964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,73:147:99:2795,0,2818:35,39,41,32
chr1	1848121	.	G	C	2486.44	PASS	AC=1;AF=0.5;AN=2;DP=574;FractionInformativeReads=1;MQ=60;set=variant13-variant16-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,79:152:99:2973,0,2783:33,40,44,35
chr1	1848160	.	A	G	1556.89	PASS	AC=1;AF=0.5;AN=2;DP=924;FractionInformativeReads=1;MQ=60;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,90:159:99:2313,0,1784:29,40,44,46
chr1	1848225	.	A	G	2571.05	PASS	AC=1;AF=0.5;AN=2;DP=165;FS=1.259;FractionInformativeReads=1;MQ=60;MQRankSum=2.356;QD=15.58;ReadPosRankSum=1.975;SOR=0.571;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,101:165:99:2599,0,1568:27,37,46,55
chr1	1848734	.	A	G	430.67	PASS	AC=2;AF=0.929;AN=2;DP=642;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:466,36,0:0,0,4,8
chr1	1848832	.	A	AAC	111.21	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=0;MQ=60;set=variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:70:70,0,160:2,2,1,1
chr1	1849530	.	T	C	1371.01	PASS	AC=1;AF=0.5;AN=2;DP=681;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:79,57:136:99:1595,0,2439:41,38,31,26
chr1	1849744	.	G	A	3092.76	PASS	AC=1;AF=0.5;AN=2;DP=1714;MQ=60;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:152,138:290:99:3558,0,4012:67,85,59,79
chr1	1850136	.	C	T	1089.67	PASS	AC=1;AF=0.575;AN=2;DP=2017;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,42:89:99:1066,0,1233:20,27,21,21
chr1	1850428	.	A	G	2044.76	PASS	AC=1;AF=0.611;AN=2;DP=2186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,37:55:99:959,0,388:10,8,22,15
chr1	1853588	.	C	T	72.49	PASS	AC=1;AF=0.5;AN=2;DP=58;FractionInformativeReads=1;MQ=60;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:153,0,185:5,1,2,4
chr1	1853615	.	T	TCTGA	367.6	PASS	AC=2;AF=1;AN=2;DP=769;FS=0;MQ=60;MQRankSum=-0.742;ReadPosRankSum=-0.628;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:720,48,0:0,0,12,4
chr1	1853863	.	T	C	275.36	PASS	AC=1;AF=0.5;AN=2;DP=297;FractionInformativeReads=1;MQ=60;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,22:55:99:591,0,931:14,19,6,16
chr1	1853921	.	T	C	188.87	PASS	AC=1;AF=0.5;AN=2;DP=137;FractionInformativeReads=1;MQ=60;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:327,0,493:7,7,4,7
chr1	1854109	.	A	G	787.82	PASS	AC=1;AF=0.597;AN=2;DP=3621;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,51:94:99:1207,0,921:22,21,30,21
chr1	1854321	.	A	G	432.35	PASS	AC=2;AF=0.738;AN=2;DP=1185;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1031,90,0:0,0,20,10
chr1	1854546	.	C	T	2119.47	PASS	AC=1;AF=0.5;AN=2;DP=981;MQ=60;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:111,66:177:99:1411,0,2670:53,58,33,33
chr1	1855319	.	C	T	698.39	PASS	AC=1;AF=0.5;AN=2;DP=501;MQ=60;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,46:87:99:1027,0,974:17,24,21,25
chr1	1855450	.	A	G	93.15	PASS	AC=2;AF=0.786;AN=2;DP=736;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:430,36,0:0,0,2,10
chr1	1856098	.	C	T	387.54	PASS	AC=1;AF=0.588;AN=2;DP=676;MQ=60;set=variant2-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant31-variant32-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:467,0,585:10,10,4,13
chr1	1858071	.	G	T	3165.97	PASS	AC=1;AF=0.5;AN=2;DP=1388;MQ=60;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:122,108:230:99:3036,0,3377:53,69,41,67
chr1	1858100	.	C	T	3739.33	PASS	AC=1;AF=0.5;AN=2;DP=237;FS=0.474;FractionInformativeReads=1;MQ=60;MQRankSum=-2.635;QD=15.78;ReadPosRankSum=2.175;SOR=0.735;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:105,132:237:99:3768,0,2865:52,53,64,68
chr1	1858161	.	C	T	3244.88	PASS	AC=1;AF=0.5;AN=2;DP=1527;MQ=60;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:165,126:291:99:2955,0,4253:92,73,70,56
chr1	1858309	.	T	C	2274.76	PASS	AC=1;AF=0.592;AN=2;DP=10099;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,121:249:99:3222,0,3469:57,71,60,61
chr1	1859131	.	C	T	2205.4	PASS	AC=1;AF=0.588;AN=2;DP=3352;MQ=60;set=variant2-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant31-variant32-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:99,90:189:99:2133,0,2518:55,44,51,39
chr1	1859176	.	T	C	1178.99	PASS	AC=1;AF=0.5;AN=2;DP=1092;MQ=60;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:86,95:181:99:2133,0,1929:38,48,46,49
chr1	1860087	.	C	T	393.19	PASS	AC=1;AF=0.597;AN=2;DP=2230;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:596,0,524:12,9,14,10
chr1	1860141	.	C	T	595.36	PASS	AC=1;AF=0.5;AN=2;DP=447;MQ=60;set=variant-variant13-variant16-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,33:67:99:880,0,728:20,14,19,14
chr1	1870210	.	G	A	186.75	PASS	AC=2;AF=0.768;AN=2;DP=978;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:773,60,0:0,0,18,2
chr1	1871979	.	G	A	358.46	PASS	AC=1;AF=0.611;AN=2;DP=2008;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,41:71:99:1061,0,802:10,20,14,27
chr1	1873453	.	G	A	42.23	PASS	AC=1;AF=0.611;AN=2;DP=742;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:178,0,174:5,0,5,1
chr1	1873514	.	A	G	206.4	PASS	AC=1;AF=0.611;AN=2;DP=1435;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:425,0,487:11,7,11,8
chr1	1873525	.	T	C	191.38	PASS	AC=1;AF=0.611;AN=2;DP=1535;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:442,0,485:11,7,10,8
chr1	1873625	.	G	A	629.05	PASS	AC=1;AF=0.588;AN=2;DP=845;MQ=60;set=variant2-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant22-variant26-variant31-variant32-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:672,0,533:10,10,11,16
chr1	1873697	.	G	A	466.65	PASS	AC=1;AF=0.611;AN=2;DP=1486;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:663,0,622:8,9,7,10
chr1	1873699	.	G	C	466.65	PASS	AC=1;AF=0.611;AN=2;DP=1466;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:663,0,622:7,8,7,10
chr1	1886500	.	GCGGCTC	G	613.66	PASS	AC=1;AF=0.614;AN=2;DP=858;set=variant-variant2-variant5-variant7-variant8-variant14-variant15-variant16-variant19-variant20-variant22-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:411,0,663:15,2,10,1
chr1	1886507	.	ACACCGGAAGTGC	A	607.94	PASS	AC=1;AF=0.614;AN=2;DP=917;set=variant-variant2-variant5-variant7-variant8-variant14-variant15-variant16-variant19-variant20-variant22-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:414,0,621:14,2,10,1
chr1	1886519	.	C	A	425.35	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=0;FractionInformativeReads=0.491;MQ=60;MQRankSum=-1.308;QD=7.73;ReadPosRankSum=-2.739;SOR=0.602;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:454,0,414:10,1,14,2
chr1	1886859	.	C	T	2846.71	PASS	AC=1;AF=0.605;AN=2;DP=3947;MQ=60;set=variant2-variant5-variant7-variant8-variant14-variant15-variant19-variant20-variant22-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:84,104:188:99:2567,0,2181:45,39,57,47
chr1	1887019	.	A	G	1667.8	PASS	AC=2;AF=0.768;AN=2;DP=5879;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,122:123:99:4150,329,0:1,0,56,66
chr1	1887091	.	CG	C	1204.58	PASS	AC=1;AF=0.605;AN=2;DP=1519;MQ=60;set=variant2-variant5-variant7-variant8-variant14-variant15-variant19-variant20-variant22-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,38:92:99:1203,0,1835:25,29,11,27
chr1	1887111	.	GC	G	1185.24	PASS	AC=1;AF=0.605;AN=2;DP=1439;MQ=60;set=variant2-variant5-variant7-variant8-variant14-variant15-variant19-variant20-variant22-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,40:90:99:1211,0,1590:25,25,11,29
chr1	1887245	.	G	A	1786.64	PASS	AC=1;AF=0.583;AN=2;DP=2144;MQ=60;set=variant2-variant7-variant8-variant14-variant15-variant19-variant20-variant22-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,44:100:99:1072,0,1512:29,27,26,18
chr1	1888193	.	C	A	1869.99	PASS	AC=1;AF=0.605;AN=2;DP=2665;MQ=60;set=variant2-variant5-variant7-variant8-variant14-variant15-variant19-variant20-variant22-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,52:113:99:1337,0,1753:24,37,24,28
chr1	1888330	.	C	T	353.46	PASS	AC=2;AF=0.658;AN=2;DP=559;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant14-variant15-variant19-variant20-variant22-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1044,81,0:0,0,6,21
chr1	1891486	.	A	G	1469.49	PASS	AC=1;AF=0.5;AN=2;DP=121;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.775;QD=12.14;ReadPosRankSum=1.013;SOR=0.729;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,60:121:99:1498,0,1472:28,33,27,33
chr1	1895177	.	C	T	914.61	PASS	AC=1;AF=0.559;AN=2;DP=1294;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,46:76:99:1193,0,686:19,11,27,19
chr1	1896440	.	G	A	942.84	PASS	AC=1;AF=0.559;AN=2;DP=2579;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:97,54:151:99:1168,0,2465:49,48,29,25
chr1	1896553	.	C	T	475.21	PASS	AC=1;AF=0.559;AN=2;DP=1397;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,36:91:99:981,0,1420:20,35,14,22
chr1	1897753	.	C	G	499.21	PASS	AC=1;AF=0.559;AN=2;DP=1010;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,35:58:99:790,0,550:15,8,18,17
chr1	1897960	.	G	A	596.23	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.019;QD=18.07;ReadPosRankSum=-1.553;SOR=0.96;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,21:33:99:624,0,322:4,8,6,15
chr1	1900018	.	C	G	715.2	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.236;QD=14.02;ReadPosRankSum=1.613;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,27:51:99:743,0,965:17,7,20,7
chr1	1900024	.	TG	T	801.34	PASS	AC=1;AF=0.559;AN=2;DP=863;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:848,0,1133:21,8,18,7
chr1	1900106	.	T	TCTC	1502.49	PASS	AC=1;AF=0.529;AN=2;DP=2089;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,53:108:99:2098,0,2087:29,26,34,19
chr1	1900232	.	T	C	1328.25	PASS	AC=1;AF=0.603;AN=2;DP=5110;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,79:144:99:1986,0,1530:29,36,33,46
chr1	1900332	.	A	G	503.92	PASS	AC=1;AF=0.567;AN=2;DP=714;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant23-variant28-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:627,0,1072:10,15,8,11
chr1	1900339	.	A	G	506.47	PASS	AC=1;AF=0.559;AN=2;DP=729;set=variant2-variant5-variant8-variant10-variant14-variant15-variant18-variant19-variant22-variant23-variant28-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,16:41:99:579,0,1078:9,16,6,10
chr1	1916782	.	C	A	3250.23	PASS	AC=1;AF=0.5;AN=2;DP=537;FractionInformativeReads=1;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:111,77:188:99:2841,0,4228:59,52,45,32
chr1	1916806	.	C	T	3602.25	PASS	AC=1;AF=0.5;AN=2;DP=603;FractionInformativeReads=1;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:116,91:207:99:3263,0,4393:60,56,51,40
chr1	1916890	.	C	T	1094.72	PASS	AC=2;AF=0.643;AN=2;DP=3514;MQ=60;set=variant-variant2-variant5-variant8-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant30-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4684,461,0:0,0,64,91
chr1	1918191	.	A	G	54.14	PASS	AC=2;AF=0.676;AN=2;DP=369;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:455,39,0:0,0,8,5
chr1	1918296	.	C	T	419.09	PASS	AC=1;AF=0.5;AN=2;DP=118;FractionInformativeReads=1;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:622,0,485:13,6,13,10
chr1	1918488	.	A	G	769.45	PASS	AC=2;AF=0.653;AN=2;DP=4387;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3319,329,0:0,0,55,55
chr1	1918535	.	A	T	372.24	PASS	AC=1;AF=0.571;AN=2;DP=1758;MQ=60;set=variant-variant2-variant5-variant8-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant30-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,43:92:99:1027,0,1087:20,29,16,27
chr1	1918584	.	C	T	258.3	PASS	AC=1;AF=0.571;AN=2;DP=910;MQ=60;set=variant-variant2-variant5-variant8-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant30-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:317,0,713:8,17,2,11
chr1	1918595	.	G	A	242.46	PASS	AC=1;AF=0.548;AN=2;DP=760;MQ=60;set=variant-variant2-variant5-variant8-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant28-variant30-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,11:35:99:328,0,714:7,17,1,10
chr1	1920434	.	TA	T,TAA	528.36	PASS	AC=0,1;AF=0.167,0.361;AN=2;DP=965;MQ=60;set=variant-variant2-filterInvariant4-filterInvariant5-variant10-variant13-variant14-variant18-variant20-variant21-variant22-filterInvariant24-variant28-filterInvariant31-variant36-variant37-variant39-variant41	GT:DP:GQ:SB	0/2:61:99:15,14,16,16
chr1	1922303	.	C	T	647.24	PASS	AC=2;AF=0.653;AN=2;DP=1917;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1397,135,0:0,0,25,20
chr1	1922555	.	A	G	40.73	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,11:13:17:327,0,17:1,1,4,7
chr1	1956362	.	G	A	1237.99	PASS	AC=2;AF=0.86;AN=2;DP=9196;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,225:225:99:6911,672,0:0,0,134,91
chr1	1957037	.	T	C	3027.07	PASS	AC=2;AF=0.72;AN=2;DP=17463;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,383:383:99:11704,1146,0:0,0,188,195
chr1	1960926	.	T	C	427.94	PASS	AC=2;AF=0.884;AN=2;DP=1358;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1194,102,0:0,0,26,8
chr1	1981836	.	C	T	70.68	PASS	AC=2;AF=0.889;AN=2;DP=291;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:208,18,0:0,0,2,4
chr1	1986736	.	GA	G	312.46	PASS	AC=1;AF=0.536;AN=2;DP=310;MQ=60;set=variant5-variant11-variant14-variant16-variant17-variant18-variant20-variant25-variant27-variant29-variant35-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:379,0,518:14,2,12,0
chr1	1987803	.	G	A	106.41	PASS	AC=2;AF=0.611;AN=2;DP=358;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant11-variant13-variant14-variant16-variant28-variant29-variant30-variant31-variant34-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,23:24:62:719,62,0:1,0,16,7
chr1	1987993	.	T	C	1178.57	PASS	AC=2;AF=0.63;AN=2;DP=3026;MQ=60;set=variant-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant20-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3553,348,0:0,0,62,54
chr1	1988217	.	G	T	286.62	PASS	AC=1;AF=0.667;AN=2;DP=35;FractionInformativeReads=1;set=variant16-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:193,0,192:2,4,1,6
chr1	1991014	.	A	G	938.36	PASS	AC=1;AF=0.533;AN=2;DP=2185;MQ=60;set=variant-variant4-variant7-variant10-variant11-variant13-variant14-variant16-variant28-variant31-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,59:118:99:1378,0,1519:29,30,30,29
chr1	1991123	.	G	A	389.12	PASS	AC=1;AF=0.533;AN=2;DP=1665;MQ=60;set=variant-variant4-variant7-variant10-variant11-variant13-variant14-variant16-variant28-variant31-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,43:88:99:1014,0,1061:18,27,18,25
chr1	1991162	.	G	A	671.85	PASS	AC=1;AF=0.529;AN=2;DP=1196;MQ=60;set=variant5-variant11-variant14-variant16-variant17-variant18-variant20-variant25-variant27-variant29-variant30-variant34-variant35-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:824,0,862:13,22,10,23
chr1	1991173	.	A	G	175.39	PASS	AC=2;AF=0.63;AN=2;DP=1553;MQ=60;set=variant-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant20-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,56:57:99:1744,165,0:1,0,18,38
chr1	2004908	.	G	A	1403.54	PASS	AC=1;AF=0.5;AN=2;DP=302;MQ=60;set=variant16-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,49:95:99:1143,0,1196:28,18,29,20
chr1	2004947	.	T	C	2000.7	PASS	AC=1;AF=0.636;AN=2;DP=2791;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant11-variant14-variant16-variant17-variant18-variant20-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,65:125:99:1468,0,1288:29,31,34,31
chr1	2005740	.	T	C	1889.94	PASS	AC=2;AF=0.932;AN=2;DP=2873;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1866,174,0:0,0,17,42
chr1	2036263	.	G	A	2418.21	PASS	AC=1;AF=0.744;AN=2;DP=3949;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,62:116:99:1368,0,1257:27,27,29,33
chr1	2100840	.	C	T	1838.1	PASS	AC=1;AF=0.5;AN=2;DP=156;FS=2.833;FractionInformativeReads=1;MQ=60;MQRankSum=-1.277;QD=11.78;ReadPosRankSum=0.041;SOR=0.498;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:86,70:156:99:1866,0,2206:49,37,36,34
chr1	2106762	.	C	A	520.84	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=1.079;FractionInformativeReads=1;MQ=60;MQRankSum=1.648;QD=9.65;ReadPosRankSum=-1.926;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:549,0,737:10,19,10,15
chr1	2106840	.	T	C	328.54	PASS	AC=2;AF=1;AN=2;DP=627;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:710,48,0:0,0,0,16
chr1	2106896	.	T	C	61.77	PASS	AC=2;AF=1;AN=2;DP=186;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:267,18,0:0,0,0,6
chr1	2113180	.	C	G	167.35	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.198;QD=23.91;ReadPosRankSum=0.922;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:66:196,0,66:2,0,5,0
chr1	2118539	.	T	C	434.21	PASS	AC=1;AF=0.75;AN=2;DP=1598;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:554,0,577:17,9,14,8
chr1	2121037	.	TGCGGGGGAGCCGAGAGGCGGGGCTGCTG	T	917.94	PASS	AC=1;AF=0.5;AN=2;DP=391;MQ=60;set=variant2-variant30-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,34:82:99:1289,0,2829:33,15,26,8
chr1	2121118	.	C	T	2926.23	PASS	AC=1;AF=0.757;AN=2;DP=7430;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,91:182:99:2278,0,2158:52,39,58,33
chr1	2125172	.	G	A	2574.78	PASS	AC=1;AF=0.536;AN=2;DP=2102;MQ=60;set=variant4-variant5-variant12-variant13-variant20-variant23-variant25-variant31-variant33-variant34-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,77:127:99:2200,0,1246:21,29,39,38
chr1	2126139	.	C	G	161.96	PASS	AC=2;AF=1;AN=2;DP=505;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:238,24,0:0,0,3,5
chr1	2144788	.	A	G	4672.92	PASS	AC=1;AF=0.554;AN=2;DP=5005;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant23-variant25-variant26-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,98:196:99:2416,0,2625:49,49,42,56
chr1	2144982	.	G	T	3444.13	PASS	AC=1;AF=0.829;AN=2;DP=4014;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,41:100:99:789,0,1651:17,42,18,23
chr1	2234251	.	A	G	238.54	PASS	AC=2;AF=0.821;AN=2;DP=632;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:409,30,0:0,0,9,1
chr1	2234903	.	C	T	945.94	PASS	AC=1;AF=0.536;AN=2;DP=1289;MQ=60;set=variant-variant8-variant14-variant18-variant20-variant26-variant27-variant32-variant33-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,34:71:99:783,0,1198:9,28,16,18
chr1	2235662	.	G	A	858.91	PASS	AC=1;AF=0.5;AN=2;DP=491;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant18-variant20-variant26-variant27-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,32:56:99:1321,0,1308:16,8,19,13
chr1	2235672	.	C	T	852.89	PASS	AC=1;AF=0.55;AN=2;DP=679;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant18-variant20-variant26-variant27-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:1289,0,1475:20,9,19,15
chr1	2240006	.	T	C	7534.4	PASS	AC=2;AF=0.826;AN=2;DP=9640;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,164:167:99:5094,440,0:2,1,94,70
chr1	2241376	.	C	CT,CTT	405.72	PASS	AC=2,0;AF=0.577,0.244;AN=2;DP=562;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:4:12:0,0,4,0
chr1	2252759	.	A	G	2072.78	PASS	AC=1;AF=0.581;AN=2;DP=4216;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,37:81:99:1068,0,1104:26,18,21,16
chr1	2255633	.	G	A	379.59	PASS	AC=1;AF=0.5;AN=2;DP=657;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant18-variant20-variant27-variant29-variant30-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:466,0,312:7,7,8,11
chr1	2286920	.	C	T	568.22	PASS	AC=1;AF=0.5;AN=2;DP=297;FractionInformativeReads=1;MQ=60;set=variant25-variant29-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1099,0,917:17,22,19,27
chr1	2286947	.	A	G	557.96	PASS	AC=1;AF=0.881;AN=2;DP=2906;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,35:67:99:895,0,748:14,18,13,22
chr1	2316517	.	C	T	838.75	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=0.79;FractionInformativeReads=1;MQ=60;MQRankSum=1.177;QD=9.22;ReadPosRankSum=2.82;SOR=0.843;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,41:91:99:867,0,1302:25,25,19,22
chr1	2325548	.	G	A	1383.85	PASS	AC=1;AF=0.5;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant31-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,39:74:99:915,0,1086:16,19,19,20
chr1	2326800	.	G	A	618.09	PASS	AC=1;AF=0.5;AN=2;DP=157;FractionInformativeReads=1;MQ=60;set=variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,51:83:99:1390,0,786:14,18,20,31
chr1	2328714	.	A	G	2190.97	PASS	AC=1;AF=0.955;AN=2;DP=2261;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,16:50:99:440,0,1201:6,28,3,13
chr1	2335199	.	GATT	G	586.48	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=2.865;FractionInformativeReads=0.94;MQ=60;MQRankSum=-0.83;QD=11.73;ReadPosRankSum=1.362;SOR=1.341;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,17:47:99:624,0,1447:11,19,4,13
chr1	2337277	.	C	T	1183.4	PASS	AC=1;AF=0.55;AN=2;DP=852;MQ=60;set=variant10-variant12-variant14-variant31-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,40:90:99:892,0,1177:20,30,18,22
chr1	2398856	.	G	T	312.53	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.68;QD=10.78;ReadPosRankSum=2.815;SOR=0.582;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:341,0,310:8,7,7,7
chr1	2398881	.	GCCTTCCTCA	G	623.8	PASS	AC=2;AF=0.648;AN=2;DP=1205;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant13-variant14-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1572,106,0:0,0,19,16
chr1	2399119	.	A	G	2255.79	PASS	AC=2;AF=0.694;AN=2;DP=5468;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:5940,430,0:0,0,70,70
chr1	2399149	.	A	G	2060.83	PASS	AC=2;AF=0.694;AN=2;DP=4808;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:5450,382,0:0,0,58,67
chr1	2399402	.	C	G	110.38	PASS	AC=1;AF=0.545;AN=2;DP=96;FractionInformativeReads=1;MQ=60;set=variant2-variant13-variant24-variant25-variant31-variant33-variant34-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:115,0,155:0,4,1,3
chr1	2422614	.	G	A	772.2	PASS	AC=1;AF=0.798;AN=2;DP=3909;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,31:84:99:721,0,1474:31,22,18,13
chr1	2426149	.	C	A	450.23	PASS	AC=1;AF=0.571;AN=2;DP=676;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,24:31:99:607,0,165:6,1,17,7
chr1	2428874	.	T	C	439.37	PASS	AC=1;AF=0.833;AN=2;DP=3383;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,34:78:99:826,0,1155:40,4,30,4
chr1	2431057	.	C	T	825.09	PASS	AC=1;AF=0.545;AN=2;DP=1837;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant14-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,42:79:99:1063,0,876:24,13,22,20
chr1	2433894	.	G	A	1499.13	PASS	AC=1;AF=0.5;AN=2;DP=124;FS=1.421;FractionInformativeReads=1;MQ=60;MQRankSum=-0.573;QD=12.09;ReadPosRankSum=-2.041;SOR=0.561;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,66:124:99:1527,0,1474:32,26,34,32
chr1	2434744	.	C	T	1060.29	PASS	AC=1;AF=0.556;AN=2;DP=2145;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant11-variant16-variant18-variant21-variant26-variant28-variant33-variant34-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,56:120:99:1358,0,1583:34,30,26,30
chr1	2435200	.	G	A	685.89	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0.811;FractionInformativeReads=1;MQ=60;MQRankSum=-0.84;QD=7.3;ReadPosRankSum=-2.091;SOR=0.843;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,33:94:99:714,0,1710:31,30,18,15
chr1	2435349	.	A	C	335.87	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3245;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:61,24:85:99:411,0,3708:10,51,24,0
chr1	2435356	.	CACAGACA	C	154.74	PASS	AC=1;AF=0.5;AN=2;DP=2064;MQ=60;set=filterInvariant-variant2-variant4-filterInvariant5-variant7-variant9-variant10-variant11-variant12-filterInvariant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-filterInvariant28-variant30-variant34-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,20:84:99:379,0,3969:8,56,20,0
chr1	2436778	.	A	G	768.78	PASS	AC=1;AF=0.568;AN=2;DP=937;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,12:43:99:296,0,887:19,12,8,4
chr1	2441358	.	T	C	1185.16	PASS	AC=1;AF=0.568;AN=2;DP=2158;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,39:82:99:956,0,1252:31,12,25,14
chr1	2441392	.	T	C	1696.45	PASS	AC=1;AF=0.568;AN=2;DP=2740;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,56:114:99:1504,0,1430:36,22,35,21
chr1	2442953	.	C	A	1110.32	PASS	AC=1;AF=0.571;AN=2;DP=1367;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:826,0,1052:16,17,18,14
chr1	2443212	.	G	A	739.86	PASS	AC=1;AF=0.571;AN=2;DP=854;set=variant4-variant6-variant7-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:312,0,564:7,13,3,10
chr1	2445406	.	A	G	1789.17	PASS	AC=1;AF=0.568;AN=2;DP=3097;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,68:144:99:1525,0,1854:40,36,37,31
chr1	2446880	.	A	G	808.26	PASS	AC=1;AF=0.568;AN=2;DP=1439;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,39:80:99:1033,0,1064:16,25,14,25
chr1	2446960	.	T	C	502.9	PASS	AC=1;AF=0.568;AN=2;DP=904;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,16:46:99:394,0,957:15,15,6,10
chr1	2452357	.	G	A	1012.35	PASS	AC=1;AF=0.568;AN=2;DP=1433;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:749,0,1024:12,24,9,21
chr1	2452444	.	A	G	369.74	PASS	AC=1;AF=0.568;AN=2;DP=576;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:374,0,375:5,9,3,9
chr1	2452569	.	T	C	950.93	PASS	AC=1;AF=0.821;AN=2;DP=2170;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:799,0,684:18,7,19,9
chr1	2487663	.	C	A	918.5	PASS	AC=2;AF=0.703;AN=2;DP=4549;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4406,425,0:0,0,79,63
chr1	2487766	.	T	C	1438.44	PASS	AC=2;AF=0.703;AN=2;DP=5104;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5384,534,0:0,0,85,93
chr1	2488153	.	A	G	634.98	PASS	AC=2;AF=0.703;AN=2;DP=2462;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2880,269,0:0,0,28,62
chr1	2490898	.	C	A	1606.99	PASS	AC=2;AF=0.703;AN=2;DP=7042;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,181:183:99:5132,504,0:0,2,114,67
chr1	2490942	.	C	A	2833.18	PASS	AC=2;AF=0.703;AN=2;DP=8428;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,242:242:99:7490,724,0:0,0,122,120
chr1	2491205	.	C	T	2395.35	PASS	AC=2;AF=0.703;AN=2;DP=6689;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:6440,616,0:0,0,106,100
chr1	2494330	.	G	A	2254.91	PASS	AC=1;AF=0.545;AN=2;DP=2358;MQ=60;set=variant-variant8-variant11-variant12-variant22-variant25-variant29-variant31-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:107,92:199:99:2188,0,2588:52,55,45,47
chr1	2494785	.	G	A	1226.27	PASS	AC=2;AF=0.703;AN=2;DP=3451;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3704,363,0:0,0,60,62
chr1	2518160	.	C	T	281.19	PASS	AC=1;AF=0.5;AN=2;DP=37;FractionInformativeReads=1;MQ=60;set=variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:441,0,244:7,3,11,2
chr1	2518186	.	A	G	667.58	PASS	AC=2;AF=1;AN=2;DP=909;FS=0;MQ=60;MQRankSum=1.239;ReadPosRankSum=1.569;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:834,69,0:0,0,19,4
chr1	2520302	.	T	C	5864	PASS	AC=1;AF=0.611;AN=2;DP=4363;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:75,79:154:99:2026,0,1856:41,34,47,32
chr1	2520500	.	G	A	3274.49	PASS	AC=1;AF=0.611;AN=2;DP=1662;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,30:64:99:726,0,872:11,23,9,21
chr1	2520527	.	T	C	2152.55	PASS	AC=1;AF=0.611;AN=2;DP=1009;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:375,0,730:6,19,4,9
chr1	2521430	.	C	T	679.45	PASS	AC=1;AF=0.577;AN=2;DP=744;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant11-variant12-variant21-variant22-variant25-variant29-variant30-variant33-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,22:56:99:677,0,1083:15,19,6,16
chr1	2522852	.	C	T	586.29	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=1.607;FractionInformativeReads=1;MQ=60;MQRankSum=0.753;QD=19.54;ReadPosRankSum=-1.088;SOR=0.328;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:615,0,440:10,3,11,6
chr1	2523212	.	G	C	1286.29	PASS	AC=1;AF=0.611;AN=2;DP=707;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,11:37:99:294,0,722:16,10,7,4
chr1	2524205	.	C	T	7252.87	PASS	AC=1;AF=0.611;AN=2;DP=4910;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:82,105:187:99:2598,0,1972:49,33,58,47
chr1	2524457	.	T	C	2581.71	PASS	AC=1;AF=0.611;AN=2;DP=1421;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,26:41:99:818,0,351:3,12,5,21
chr1	2525868	.	G	A	1378.26	PASS	AC=1;AF=0.5;AN=2;DP=126;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.141;QD=10.94;ReadPosRankSum=-1.53;SOR=0.692;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,55:126:99:1406,0,1826:31,40,24,31
chr1	2526336	.	C	T	1410.36	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=0.734;FractionInformativeReads=1;MQ=60;MQRankSum=-0.65;QD=13.18;ReadPosRankSum=1.001;SOR=0.803;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,60:107:99:1439,0,1113:20,27,24,36
chr1	2526746	.	A	G	10768.2	PASS	AC=1;AF=0.611;AN=2;DP=7578;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:126,120:246:99:2982,0,2944:68,58,59,61
chr1	2527678	.	A	G	509.75	PASS	AC=1;AF=0.737;AN=2;DP=1352;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:569,0,459:4,11,4,14
chr1	2528133	.	T	C	5016.85	PASS	AC=1;AF=0.724;AN=2;DP=9553;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:149,119:268:99:2775,0,3352:73,76,55,64
chr1	2530341	.	A	AG	811.16	PASS	AC=1;AF=0.737;AN=2;DP=1145;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:531,0,535:2,15,4,13
chr1	2535224	.	C	A	3757.65	PASS	AC=1;AF=0.5;AN=2;DP=322;FS=3.73;FractionInformativeReads=1;MQ=60;MQRankSum=3.507;QD=11.67;ReadPosRankSum=-0.87;SOR=0.902;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:167,155:322:99:3786,0,4059:99,68,99,56
chr1	2535569	.	C	A	1169.08	PASS	AC=1;AF=0.5;AN=2;DP=111;FractionInformativeReads=1;MQ=60;set=variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,35:54:99:880,0,606:12,7,20,15
chr1	2535613	.	C	A	4507.78	PASS	AC=1;AF=0.611;AN=2;DP=3117;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,73:113:99:1861,0,1122:25,15,44,29
chr1	2535758	.	A	G	6090.62	PASS	AC=1;AF=0.611;AN=2;DP=4922;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:88,81:169:99:1986,0,2080:40,48,33,48
chr1	2537095	.	G	A	5408.89	PASS	AC=1;AF=0.611;AN=2;DP=3799;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:85,78:163:99:1756,0,2050:37,48,35,43
chr1	2537838	.	C	T	3749.54	PASS	AC=1;AF=0.611;AN=2;DP=2192;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,28:79:99:751,0,1351:18,33,7,21
chr1	2538349	.	G	A	2103.88	PASS	AC=1;AF=0.611;AN=2;DP=1365;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,26:55:99:723,0,906:23,6,19,7
chr1	2541269	.	A	G	3158.02	PASS	AC=1;AF=0.611;AN=2;DP=2485;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,37:93:99:880,0,1340:26,30,17,20
chr1	2542653	.	A	G	5548.88	PASS	AC=1;AF=0.611;AN=2;DP=4411;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:61,74:135:99:1890,0,1407:34,27,43,31
chr1	2560735	.	A	G	839.58	PASS	AC=1;AF=0.724;AN=2;DP=1882;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:615,0,675:17,10,15,8
chr1	2560882	.	G	A	2668.7	PASS	AC=1;AF=0.724;AN=2;DP=2881;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,37:66:99:1336,0,1505:14,15,19,18
chr1	2560903	.	T	G	2517.21	PASS	AC=1;AF=0.724;AN=2;DP=2809;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,33:60:99:1269,0,1538:14,13,16,17
chr1	2564183	.	T	C	1038.18	PASS	AC=1;AF=0.724;AN=2;DP=1927;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:509,0,824:19,7,12,9
chr1	2564465	.	T	C	1819.09	PASS	AC=1;AF=0.724;AN=2;DP=1842;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:604,0,747:8,17,6,14
chr1	2573199	.	A	G	3678.94	PASS	AC=2;AF=0.884;AN=2;DP=4829;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2982,291,0:0,0,51,46
chr1	2702167	.	C	T	274.1	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=2.808;FractionInformativeReads=1;MQ=60;MQRankSum=-0.061;QD=18.27;ReadPosRankSum=-0.551;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:302,0,184:5,0,8,2
chr1	2717470	.	G	A	1658.91	PASS	AC=1;AF=0.611;AN=2;DP=1066;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:332,0,567:5,15,3,10
chr1	2938989	.	G	A	1606.92	PASS	AC=1;AF=0.6;AN=2;DP=3211;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant12-variant13-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant31-variant32-variant34-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:88,76:164:99:1864,0,2470:39,49,35,41
chr1	2983963	.	G	A	6949.55	PASS	AC=1;AF=0.645;AN=2;DP=7384;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,113:235:99:2263,0,2835:69,53,61,52
chr1	3154676	.	A	G	634.59	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.871;QD=9.33;ReadPosRankSum=-1.575;SOR=0.773;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,30:68:99:663,0,859:16,22,12,18
chr1	3310928	.	C	CCG	228.73	PASS	AC=2;AF=1;AN=2;DP=587;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:664,45,0:0,0,8,7
chr1	3310968	.	A	G	410.01	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=14.211;FractionInformativeReads=1;MQ=60;MQRankSum=0.787;QD=21.58;ReadPosRankSum=-1.065;SOR=2.215;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,14:19:99:438,0,124:1,4,11,3
chr1	3311101	.	C	G	210.73	PASS	AC=1;AF=0.5;AN=2;DP=112;FractionInformativeReads=1;set=variant24-variant25-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:293,0,609:14,10,9,5
chr1	3311212	.	C	G	801.47	PASS	AC=2;AF=0.795;AN=2;DP=1040;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:809,78,0:0,0,9,17
chr1	3311261	.	C	T	433.73	PASS	AC=1;AF=0.75;AN=2;DP=499;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:223,0,337:2,7,1,6
chr1	3311270	.	A	G	175.41	PASS	AC=1;AF=0.5;AN=2;DP=50;FractionInformativeReads=1;MQ=60;set=variant24-variant25-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:271,0,270:1,6,1,7
chr1	3312914	.	T	G	4084.81	PASS	AC=1;AF=0.63;AN=2;DP=3121;MQ=60;set=variant-variant2-variant9-variant10-variant11-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,85:139:99:2079,0,1315:30,24,41,44
chr1	3327871	.	T	C	1774.92	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=4.158;FractionInformativeReads=1;MQ=60;MQRankSum=1.161;QD=12.59;ReadPosRankSum=-1.99;SOR=1.081;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,70:141:99:1803,0,1743:42,29,47,23
chr1	3328358	.	T	C	1550.43	PASS	AC=2;AF=0.817;AN=2;DP=8802;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:6052,598,0:0,0,104,96
chr1	3329263	.	C	T	2382.9	PASS	AC=1;AF=0.5;AN=2;DP=168;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.401;QD=14.18;ReadPosRankSum=3.307;SOR=0.694;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:77,91:168:99:2411,0,1811:33,44,39,52
chr1	3342109	.	G	T	288.69	PASS	AC=2;AF=0.639;AN=2;DP=956;MQ=60;set=variant-variant7-variant8-variant11-variant14-variant15-variant17-variant18-variant28-variant29-variant30-variant32-variant33-variant35-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1365,113,0:0,0,20,18
chr1	3342804	.	G	T	1093.38	PASS	AC=2;AF=0.571;AN=2;DP=2171;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant27-variant28-variant32-variant33-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2724,282,0:0,0,43,52
chr1	3350134	.	T	TGGGATGGCCCGCCCTGCCCACGCGCTCACCTGCCTGTCTGGGATGGCCCGCCCTGCCCACGCGCTCACCTGCCTGTCC	224.46	PASS	AC=1;AF=0.813;AN=2;DP=42;FS=0;set=variant5-variant10-variant15-filterInvariant18-filterInvariant34-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,0:1:9:422,0,9:0,1,0,0
chr1	3350173	.	T	TGGGATGGCCCGCCCTGCCCACGCGCTCACCTGCCTGTCCGGGATGGCCCGCCCTGCCCACGCGCTCACCTGCCTGTCC,TGGGATGGCCCGCCCTGCCCACGCGCTCACCTGCCTGTCC	859.75	PASS	AC=0,1;AF=0.25,0.375;AN=2;DP=180;set=variant7-variant15-variant35-variant41	GT:DP:GQ:SB	0/2:34:99:19,5,6,4
chr1	3351248	.	C	A	1211.86	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=2.771;FractionInformativeReads=1;MQ=60;MQRankSum=0.607;QD=13.32;ReadPosRankSum=-1.536;SOR=1.031;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,46:91:99:1240,0,1122:21,24,18,28
chr1	3352161	.	T	TA	513.14	PASS	AC=1;AF=0.5;AN=2;DP=472;MQ=60;set=variant-variant13-variant15-variant17-variant18-variant28-variant33-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:577,0,695:16,14,11,15
chr1	3352227	.	T	C	2206.83	PASS	AC=2;AF=0.965;AN=2;DP=2861;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:3215,252,0:0,0,50,34
chr1	3352228	.	G	C	794.87	PASS	AC=1;AF=0.5;AN=2;DP=1059;MQ=60;set=variant-variant5-variant7-variant13-variant15-variant17-variant18-variant20-variant22-variant25-variant27-variant28-variant33-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,35:82:99:988,0,1314:28,19,21,14
chr1	3352347	.	T	C	4129.58	PASS	AC=2;AF=0.965;AN=2;DP=7808;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5942,521,0:0,0,111,63
chr1	3352416	.	G	A	3956.43	PASS	AC=1;AF=0.5;AN=2;DP=330;FS=1.805;FractionInformativeReads=0.997;MQ=60;MQRankSum=1.552;QD=11.99;ReadPosRankSum=0.834;SOR=0.795;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:158,171:329:99:3985,0,3767:83,75,94,77
chr1	3352503	.	G	C	7294.78	PASS	AC=2;AF=0.965;AN=2;DP=12181;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,283:283:99:10432,855,0:0,0,118,165
chr1	3352508	.	G	A	3320.37	PASS	AC=1;AF=0.5;AN=2;DP=280;FS=1.453;FractionInformativeReads=1;MQ=60;MQRankSum=-1.644;QD=11.86;ReadPosRankSum=-0.902;SOR=0.588;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:141,139:280:99:3349,0,3493:56,85,59,80
chr1	3352541	.	T	C	5234.77	PASS	AC=2;AF=0.833;AN=2;DP=8531;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,205:205:99:6442,612,0:0,0,78,127
chr1	3352579	.	T	C	3752.35	PASS	AC=2;AF=0.965;AN=2;DP=5733;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4617,411,0:0,0,53,84
chr1	3352763	.	CTT	CT,C	3376.53	PASS	AC=2,0;AF=0.953,0.012;AN=2;DP=2973;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:61:88:3,1,29,28
chr1	3352784	.	A	G	3981.18	PASS	AC=2;AF=0.965;AN=2;DP=3084;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3189,232,0:0,0,46,30
chr1	3352872	.	A	C	2009.51	PASS	AC=2;AF=0.619;AN=2;DP=2591;MQ=60;set=variant-variant3-variant6-variant9-variant10-variant12-variant13-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant33-variant34-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3588,329,0:0,0,61,49
chr1	3353346	.	C	T	1176.78	PASS	AC=1;AF=0.5;AN=2;DP=132;FS=1.506;FractionInformativeReads=0.985;MQ=60;MQRankSum=-2.155;QD=8.91;ReadPosRankSum=-1.94;SOR=0.524;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:84,46:130:99:1205,0,2528:53,31,27,19
chr1	3353890	.	A	G	2087.8	PASS	AC=2;AF=0.965;AN=2;DP=3842;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2795,258,0:0,0,41,45
chr1	3353949	.	A	G	2356.88	PASS	AC=2;AF=0.965;AN=2;DP=4109;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2871,278,0:0,0,47,46
chr1	3354595	.	T	C	5468.96	PASS	AC=2;AF=0.965;AN=2;DP=5000;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:5776,400,0:0,0,62,71
chr1	3354615	.	T	C	5568.17	PASS	AC=2;AF=0.965;AN=2;DP=4971;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:5584,379,0:0,0,61,65
chr1	3383593	.	G	T	1354.59	PASS	AC=2;AF=0.953;AN=2;DP=3314;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2493,248,0:0,0,50,33
chr1	3383665	.	G	A	2730.25	PASS	AC=2;AF=0.953;AN=2;DP=5880;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3968,341,0:0,0,68,46
chr1	3383898	.	A	G	1913.72	PASS	AC=2;AF=0.953;AN=2;DP=3186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,67:69:99:2273,120,0:2,0,22,45
chr1	3385250	.	C	A	1361.15	PASS	AC=2;AF=0.671;AN=2;DP=1625;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1853,164,0:0,0,41,14
chr1	3385330	.	T	C	3150.19	PASS	AC=2;AF=1;AN=2;DP=5133;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:4834,472,0:0,0,92,66
chr1	3389727	.	C	T	1141.08	PASS	AC=2;AF=0.952;AN=2;DP=4608;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3545,357,0:0,0,56,63
chr1	3390238	.	T	A	3745.3	PASS	AC=2;AF=1;AN=2;DP=5680;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:3763,389,0:0,0,56,74
chr1	3394456	.	T	C	1881.94	PASS	AC=2;AF=1;AN=2;DP=3763;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3295,303,0:0,0,57,44
chr1	3394640	.	A	G	3232.56	PASS	AC=2;AF=0.988;AN=2;DP=5562;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3882,366,0:0,0,43,79
chr1	3394674	.	T	C	1804.3	PASS	AC=2;AF=1;AN=2;DP=3551;FS=0;MQ=60;MQRankSum=0.554;ReadPosRankSum=1.661;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2767,239,0:0,0,21,59
chr1	3395039	.	G	A	6477.59	PASS	AC=2;AF=0.94;AN=2;DP=12732;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,306:306:99:9075,914,0:0,0,145,161
chr1	3395229	.	T	C	716.23	PASS	AC=2;AF=1;AN=2;DP=1143;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:915,77,0:0,0,5,21
chr1	3395973	.	ACC	A	3390.47	PASS	AC=2;AF=0.952;AN=2;DP=4570;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3881,265,0:0,0,52,36
chr1	3396609	.	C	T	942.84	PASS	AC=2;AF=0.952;AN=2;DP=1364;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1275,96,0:0,0,3,29
chr1	3397188	.	T	C	4270.55	PASS	AC=2;AF=1;AN=2;DP=7570;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5646,523,0:0,0,82,93
chr1	3397415	.	C	CCT	3504.79	PASS	AC=2;AF=1;AN=2;DP=4067;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3476,238,0:0,0,35,44
chr1	3397455	.	G	A	2015.75	PASS	AC=2;AF=0.952;AN=2;DP=3070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2438,209,0:0,0,23,47
chr1	3397564	.	C	T	795.96	PASS	AC=2;AF=0.952;AN=2;DP=1841;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1533,147,0:0,0,22,27
chr1	3406791	.	A	G	582.05	PASS	AC=1;AF=0.5;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant13-variant19-variant21-variant31-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:555,0,742:13,12,13,9
chr1	3407007	.	G	A	1227.82	PASS	AC=1;AF=0.5;AN=2;DP=990;MQ=60;set=variant13-variant19-variant21-variant31-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,85:144:99:2033,0,1523:32,27,46,39
chr1	3409428	.	T	G	281.56	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=6.419;FractionInformativeReads=1;MQ=60;MQRankSum=1.362;QD=14.82;ReadPosRankSum=0.95;SOR=0.061;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:310,0,309:0,8,3,8
chr1	3412644	.	G	A	1205.48	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=0.807;FractionInformativeReads=1;MQ=60;MQRankSum=-0.11;QD=13.39;ReadPosRankSum=-2.018;SOR=0.551;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,50:90:99:1234,0,887:16,24,22,28
chr1	3412726	.	C	T	523.84	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=3.21;FractionInformativeReads=1;MQ=60;MQRankSum=0.089;QD=14.97;ReadPosRankSum=-0.657;SOR=0.313;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,24:35:99:552,0,245:3,8,10,14
chr1	3413947	.	G	A	1454.94	PASS	AC=1;AF=0.5;AN=2;DP=123;FS=3.268;FractionInformativeReads=1;MQ=60;MQRankSum=-0.678;QD=11.83;ReadPosRankSum=-3.649;SOR=0.726;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,56:123:99:1483,0,1702:36,31,26,30
chr1	3414105	.	C	T	1594.84	PASS	AC=1;AF=0.722;AN=2;DP=4219;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant15-variant16-variant17-variant19-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,86:148:99:2032,0,1437:27,35,41,45
chr1	3416449	.	C	A	2846.6	PASS	AC=1;AF=0.845;AN=2;DP=3942;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,36:78:99:863,0,1250:21,21,15,21
chr1	3416758	.	A	G	62.99	PASS	AC=1;AF=0.97;AN=2;DP=202;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:74,0,34:0,1,2,1
chr1	3417131	.	A	G	4143.91	PASS	AC=1;AF=0.898;AN=2;DP=7206;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:101,65:166:99:1374,0,2453:55,46,35,30
chr1	3417960	.	G	A	2286.88	PASS	AC=1;AF=0.845;AN=2;DP=4198;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,39:84:99:814,0,1147:17,28,16,23
chr1	3418565	.	T	C	1653.24	PASS	AC=1;AF=0.961;AN=2;DP=2424;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:783,0,550:8,13,11,16
chr1	3418612	.	CCCGG	C,CCACACCGG	215.42	PASS	AC=0,1;AF=0.333,0.167;AN=2;DP=93;set=variant5-variant33-variant41	GT:DP:GQ:SB	0/2:21:91:8,9,1,3
chr1	3431318	.	G	A	252.81	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=2.808;FractionInformativeReads=1;MQ=60;MQRankSum=-0.061;QD=16.85;ReadPosRankSum=-2.143;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:281,0,147:0,5,2,8
chr1	3440647	.	T	C	1815.65	PASS	AC=1;AF=0.92;AN=2;DP=3171;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:867,0,934:24,11,23,10
chr1	3447914	.	G	C	151.87	PASS	AC=1;AF=0.673;AN=2;DP=555;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:128,0,278:4,5,2,3
chr1	3496328	.	T	C	1270.13	PASS	AC=1;AF=0.943;AN=2;DP=1876;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,17:40:99:426,0,780:22,1,11,6
chr1	3496479	.	T	C	3123.75	PASS	AC=1;AF=0.955;AN=2;DP=5379;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:70,61:131:99:1453,0,1653:36,34,33,28
chr1	3518857	.	A	C	271.38	PASS	AC=1;AF=0.989;AN=2;DP=471;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:178,0,185:5,2,3,2
chr1	3519179	.	C	T	1233.32	PASS	AC=1;AF=0.586;AN=2;DP=2940;MQ=60;set=variant2-variant4-variant5-variant6-variant9-variant10-variant13-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,46:97:99:1116,0,1505:21,30,14,32
chr1	3527944	.	C	G	2126.01	PASS	AC=1;AF=0.966;AN=2;DP=3145;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:685,0,789:15,21,12,17
chr1	3528082	.	T	C	740.88	PASS	AC=1;AF=0.989;AN=2;DP=1687;FS=0;MQ=60;MQRankSum=-0.905;ReadPosRankSum=0.358;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,22:35:99:506,0,266:6,7,9,13
chr1	3542106	.	T	TG	2245.69	PASS	AC=1;AF=0.6;AN=2;DP=5824;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant11-variant12-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:95,104:199:99:2625,0,2356:44,51,47,57
chr1	3542186	.	G	A	1133.86	PASS	AC=1;AF=0.5;AN=2;DP=581;MQ=60;set=variant2-variant16-variant29-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,45:92:99:1236,0,1514:20,27,16,29
chr1	3563428	.	C	T	1977.36	PASS	AC=2;AF=0.571;AN=2;DP=1500;MQ=60;set=variant2-variant4-variant5-variant9-variant15-variant16-variant17-variant18-variant19-variant29-variant32-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3190,306,0:0,0,36,66
chr1	3563512	.	GC	G	175.71	PASS	AC=2;AF=0.689;AN=2;DP=877;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:890,66,0:0,0,2,20
chr1	3566706	.	G	A	2038.47	PASS	AC=2;AF=0.909;AN=2;DP=1846;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1071,101,0:0,0,11,23
chr1	3598900	.	G	A	2567.32	PASS	AC=1;AF=0.614;AN=2;DP=3504;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant10-variant11-variant12-variant15-variant16-variant18-variant20-variant22-variant25-variant28-variant34-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:82,87:169:99:3289,0,4273:43,39,41,46
chr1	3598910	.	C	T	2603.3	PASS	AC=1;AF=0.614;AN=2;DP=3450;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant10-variant11-variant12-variant15-variant16-variant18-variant20-variant22-variant25-variant28-variant34-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,88:168:99:3328,0,4227:40,40,41,47
chr1	3599514	.	C	T	2143.45	PASS	AC=1;AF=0.6;AN=2;DP=223;MQ=60;set=variant3-variant14-variant29-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:527,0,774:19,8,15,6
chr1	3599750	.	TG	T	1863.7	PASS	AC=1;AF=0.6;AN=2;DP=257;MQ=60;set=variant3-variant14-variant29-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:522,0,576:6,17,7,14
chr1	3624055	.	G	A	2816.4	PASS	AC=1;AF=0.5;AN=2;DP=281;FS=2.062;FractionInformativeReads=1;MQ=60;MQRankSum=0.26;QD=10.02;ReadPosRankSum=-0.48;SOR=0.846;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:161,120:281:99:2845,0,4325:95,66,75,45
chr1	3638674	.	C	T	4834.06	PASS	AC=2;AF=0.932;AN=2;DP=11405;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,257:257:99:7675,768,0:0,0,117,140
chr1	3640085	.	C	G	357.88	PASS	AC=2;AF=0.886;AN=2;DP=1275;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:925,87,0:0,0,11,18
chr1	3640134	.	TCTGC	T	232.97	PASS	AC=2;AF=0.886;AN=2;DP=798;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:971,66,0:0,0,6,16
chr1	3644349	.	A	G	2276.64	PASS	AC=2;AF=0.852;AN=2;DP=3970;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2536,237,0:0,0,24,55
chr1	3644374	.	A	G	1634.88	PASS	AC=2;AF=0.852;AN=2;DP=2547;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1793,162,0:0,0,16,38
chr1	3644660	.	T	C	678.82	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0.879;FractionInformativeReads=1;MQ=60;MQRankSum=0.685;QD=7.99;ReadPosRankSum=-1.145;SOR=0.807;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,30:85:99:707,0,2219:35,20,20,10
chr1	3644669	.	C	T	1352.87	PASS	AC=1;AF=0.5;AN=2;DP=573;MQ=60;set=variant2-variant4-variant13-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,60:98:99:1578,0,1318:24,14,39,21
chr1	3644805	.	A	G	2799.29	PASS	AC=1;AF=0.5;AN=2;DP=2012;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant13-variant18-variant29-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:102,123:225:99:3020,0,2479:54,48,59,64
chr1	3644858	.	G	C	2011.02	PASS	AC=1;AF=0.5;AN=2;DP=1028;MQ=60;set=variant2-variant4-variant13-variant18-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:79,94:173:99:2242,0,1882:39,40,39,55
chr1	3645844	.	G	A	390.74	PASS	AC=1;AF=0.83;AN=2;DP=1295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:344,0,228:5,3,8,2
chr1	3645989	.	G	A	1337.26	PASS	AC=1;AF=0.5;AN=2;DP=243;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,61:127:99:1445,0,1579:38,28,35,26
chr1	3646192	.	G	A	5059.29	PASS	AC=1;AF=0.83;AN=2;DP=5818;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,52:105:99:1329,0,1372:23,30,24,28
chr1	3646214	.	T	C	5033.4	PASS	AC=2;AF=0.852;AN=2;DP=5618;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3768,296,0:0,0,42,57
chr1	3646291	.	G	A	2345.98	PASS	AC=1;AF=0.83;AN=2;DP=4402;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:42,52:94:99:1339,0,1092:24,18,24,28
chr1	3647283	.	C	T	178.65	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:11:199,0,11:1,1,5,1
chr1	3647877	.	T	C	33.6	PASS	AC=1;AF=0.5;AN=2;DP=70;FractionInformativeReads=1;MQ=60;set=variant8-variant29-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:248,0,273:5,2,4,3
chr1	3647962	.	T	C	1746.15	PASS	AC=1;AF=0.83;AN=2;DP=2445;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:518,0,616:15,8,13,7
chr1	3649233	.	G	C	342.08	PASS	AC=1;AF=0.5;AN=2;DP=54;FractionInformativeReads=1;MQ=60;MQRankSum=0.655;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:442,0,428:9,5,10,3
chr1	3649298	.	C	T	678.32	PASS	AC=1;AF=0.5;AN=2;DP=146;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:954,0,1036:22,18,24,15
chr1	3649421	.	T	C	2798.38	PASS	AC=1;AF=0.5;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:97,113:210:99:2935,0,2330:57,40,72,41
chr1	3649794	.	A	C	1635.19	PASS	AC=1;AF=0.5;AN=2;DP=490;FractionInformativeReads=1;MQ=60;set=variant8-variant29-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,53:98:99:2088,0,2381:24,21,25,28
chr1	3649805	.	A	G	1648.35	PASS	AC=1;AF=0.5;AN=2;DP=485;MQ=60;set=variant8-variant29-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,55:100:99:2131,0,2375:26,19,27,28
chr1	3650316	.	C	T	628.81	PASS	AC=1;AF=0.5;AN=2;DP=98;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:457,0,503:9,11,10,9
chr1	3650887	.	G	A	634.99	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=2.268;FractionInformativeReads=1;MQ=60;MQRankSum=1.17;QD=11.55;ReadPosRankSum=0.042;SOR=0.824;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:663,0,791:15,13,12,15
chr1	3651318	.	A	G	2327.96	PASS	AC=1;AF=0.83;AN=2;DP=4384;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:55,52:107:99:1207,0,1442:30,25,25,27
chr1	3651414	.	CAG	C	1541.5	PASS	AC=1;AF=0.5;AN=2;DP=165;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,22:78:99:745,0,2500:25,31,7,15
chr1	3652384	.	G	A	1026.2	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:493,0,756:15,14,12,11
chr1	3652469	.	G	A	855.41	PASS	AC=1;AF=0.5;AN=2;DP=137;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,26:55:99:697,0,756:14,15,13,13
chr1	3652617	.	G	C	595.69	PASS	AC=1;AF=0.5;AN=2;DP=228;MQ=60;set=variant2-variant4-variant13-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:468,0,310:4,8,6,12
chr1	3652818	.	G	A	96.55	PASS	AC=1;AF=0.5;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant13-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,12:14:41:255,0,41:1,1,6,6
chr1	3662409	.	G	A	2892.6	PASS	AC=1;AF=0.5;AN=2;DP=207;FS=1.087;FractionInformativeReads=1;MQ=60;MQRankSum=-1.689;QD=13.97;ReadPosRankSum=2.439;SOR=0.61;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:89,118:207:99:2921,0,2379:38,51,53,65
chr1	3662845	.	A	G	549.45	PASS	AC=2;AF=0.64;AN=2;DP=1797;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant18-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2422,228,0:0,0,34,42
chr1	3669172	.	C	T	1444.32	PASS	AC=1;AF=0.5;AN=2;DP=858;MQ=60;set=variant2-variant4-variant18-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,72:149:99:1884,0,2039:38,39,41,31
chr1	3669201	.	A	G	1559.32	PASS	AC=2;AF=0.64;AN=2;DP=4054;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant18-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:6884,469,0:0,0,85,69
chr1	3669205	.	C	G	1610.47	PASS	AC=2;AF=0.64;AN=2;DP=4024;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant18-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:6884,469,0:0,0,85,68
chr1	3673496	.	T	G	319.16	PASS	AC=1;AF=0.619;AN=2;DP=484;MQ=60;set=variant-variant3-variant7-variant10-variant12-variant13-variant14-variant18-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:286,0,588:3,14,0,9
chr1	3677933	.	T	C	675.53	PASS	AC=2;AF=0.635;AN=2;DP=2086;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant10-variant12-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2390,243,0:0,0,37,44
chr1	3679139	.	T	C	787.34	PASS	AC=2;AF=0.673;AN=2;DP=1195;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant10-variant12-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1352,135,0:0,0,21,24
chr1	3680056	.	G	A	97.59	PASS	AC=1;AF=0.5;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:240,0,278:4,7,4,4
chr1	3683690	.	A	C	137.38	PASS	AC=1;AF=0.671;AN=2;DP=1021;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:270,0,426:10,7,8,2
chr1	3691727	.	A	C	81.98	PASS	AC=1;AF=0.563;AN=2;DP=342;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant10-variant16-variant18-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:251,0,191:6,1,6,2
chr1	3696890	.	A	C	1082.19	PASS	AC=1;AF=0.671;AN=2;DP=4186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,49:105:99:1383,0,1481:33,23,29,20
chr1	3697291	.	C	T	1017.77	PASS	AC=1;AF=0.56;AN=2;DP=1456;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant10-variant12-variant16-variant18-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:722,0,462:2,14,4,20
chr1	3701491	.	A	G	64.2	PASS	AC=1;AF=0.7;AN=2;DP=593;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:160,0,113:2,1,4,1
chr1	3703334	.	G	A	462.12	PASS	AC=1;AF=0.5;AN=2;DP=163;FractionInformativeReads=1;MQ=60;set=variant4-variant24-variant25-variant29-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,24:37:99:955,0,772:9,4,17,7
chr1	3703337	.	G	C	302.59	PASS	AC=1;AF=0.731;AN=2;DP=1165;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,24:38:99:955,0,772:10,4,17,7
chr1	3704041	.	C	T	194.88	PASS	AC=1;AF=0.563;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,11:14:92:282,0,92:1,2,4,7
chr1	3729169	.	C	G	2334.27	PASS	AC=1;AF=0.73;AN=2;DP=2485;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,35:63:99:941,0,702:9,19,10,25
chr1	3729585	.	GTA	G	160.53	PASS	AC=1;AF=0.5;AN=2;DP=292;MQ=60;set=variant-filterInvariant3-variant5-variant13-variant14-variant24-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:257,0,631:9,10,5,5
chr1	3729587	.	A	G	906.94	PASS	AC=1;AF=0.645;AN=2;DP=1508;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,12:34:99:275,0,623:11,11,5,7
chr1	3729818	.	CT	CTT,C	53.66	PASS	AC=1,0;AF=0.646,0.021;AN=2;DP=413;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant10-variant12-variant14-variant17-variant20-variant21-variant22-variant23-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:14:99:0,7,2,5
chr1	3730435	.	T	C	2496.48	PASS	AC=1;AF=0.724;AN=2;DP=3103;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,50:85:99:1563,0,1085:30,5,41,9
chr1	3731654	.	C	CT	2162.82	PASS	AC=1;AF=0.718;AN=2;DP=3093;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,51:90:99:1725,0,1290:21,18,25,26
chr1	3732103	.	T	C	7093.25	PASS	AC=1;AF=0.724;AN=2;DP=9008;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,107:205:99:2488,0,2392:37,61,45,62
chr1	3732172	.	C	T	2919.41	PASS	AC=1;AF=0.724;AN=2;DP=3837;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,47:88:99:1258,0,1187:10,31,14,33
chr1	3732596	.	G	T	1390.15	PASS	AC=1;AF=0.73;AN=2;DP=1628;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:557,0,645:17,4,14,6
chr1	3732639	.	T	A	2161.46	PASS	AC=1;AF=0.724;AN=2;DP=2929;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,31:72:99:767,0,1142:28,13,21,10
chr1	3732707	.	T	C	2879.57	PASS	AC=1;AF=0.724;AN=2;DP=4495;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,51:111:99:1130,0,1621:33,27,27,24
chr1	3732782	.	T	C	3428.93	PASS	AC=1;AF=0.718;AN=2;DP=4990;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,62:139:99:1516,0,2046:36,41,29,33
chr1	3743109	.	A	G	1678.54	PASS	AC=1;AF=0.724;AN=2;DP=1794;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:1030,0,1560:18,3,22,3
chr1	3743132	.	T	C	2467.58	PASS	AC=1;AF=0.736;AN=2;DP=2517;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,41:79:99:1384,0,2041:31,7,30,11
chr1	3743391	.	C	T	1763.56	PASS	AC=1;AF=0.574;AN=2;DP=2865;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,57:112:99:1587,0,1387:18,37,19,38
chr1	3743433	.	T	TG	2718.13	PASS	AC=1;AF=0.909;AN=2;DP=2689;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:816,0,602:9,12,6,21
chr1	3745721	.	C	T	523.97	PASS	AC=1;AF=0.577;AN=2;DP=973;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:472,0,367:10,4,13,8
chr1	3745787	.	T	C	2025.52	PASS	AC=1;AF=0.724;AN=2;DP=3458;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,44:75:99:1014,0,718:19,12,24,20
chr1	3746254	.	T	C	900.02	PASS	AC=2;AF=0.989;AN=2;DP=896;MQ=60;MQRankSum=-1.288;ReadPosRankSum=-1.111;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:784,60,0:0,0,17,3
chr1	3746583	.	G	T	1795.44	PASS	AC=1;AF=0.611;AN=2;DP=1029;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,10:32:99:354,0,894:7,15,2,8
chr1	3746585	.	T	G	317.24	PASS	AC=1;AF=0.577;AN=2;DP=966;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,22:32:99:894,0,354:2,8,7,15
chr1	3746589	.	C	G	1765.47	PASS	AC=2;AF=0.989;AN=2;DP=1546;FractionInformativeReads=1;MQ=60;MQRankSum=1.168;ReadPosRankSum=0.526;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1440,96,0:0,0,9,23
chr1	3747580	.	C	T	343.46	PASS	AC=1;AF=0.611;AN=2;DP=394;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:260,0,277:7,1,6,2
chr1	3747603	.	T	C	885.15	PASS	AC=2;AF=0.989;AN=2;DP=1043;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1144,93,0:0,0,24,7
chr1	3752868	.	CAAAA	CAA,CA,C,CAAA	200.71	PASS	AC=0,1,0,0;AF=0.357,0.381,0.012,0.024;AN=2;DP=491;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:7:12:0,1,5,1
chr1	3753136	.	A	T	1222.26	PASS	AC=1;AF=0.611;AN=2;DP=2175;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,48:75:99:1249,0,657:9,18,22,26
chr1	3755675	.	T	C	2416.4	PASS	AC=2;AF=0.989;AN=2;DP=6954;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:5471,549,0:0,0,79,104
chr1	3756120	.	A	G	2938.76	PASS	AC=1;AF=0.63;AN=2;DP=2119;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:802,0,565:13,9,20,8
chr1	3759784	.	A	G	2690.8	PASS	AC=2;AF=0.989;AN=2;DP=3906;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2875,293,0:0,0,39,59
chr1	3759889	.	TA	TAA,T,TAAA	95.89	PASS	AC=1,0,0;AF=0.524,0.024,0.024;AN=2;DP=389;MQ=60;set=variant-variant4-variant6-variant7-variant11-variant13-variant14-variant17-variant18-variant19-variant23-variant25-variant27-variant31-variant32-variant35-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:14:99:2,4,3,5
chr1	3761273	.	G	GA	55.12	PASS	AC=1;AF=0.8;AN=2;DP=97;FS=0;FractionInformativeReads=1;set=variant-variant4-variant14-variant17-variant18-variant23-variant25-variant27-variant28-variant31-variant32-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:16:105,0,16:1,0,3,1
chr1	3761479	.	C	T	2930.49	PASS	AC=1;AF=0.611;AN=2;DP=2608;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,56:115:99:1325,0,1351:28,31,29,27
chr1	3761650	.	A	G	1165.07	PASS	AC=2;AF=0.989;AN=2;DP=1621;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:950,81,0:0,0,11,16
chr1	3761772	.	C	T	828.1	PASS	AC=1;AF=0.58;AN=2;DP=746;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant16-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:576,0,577:12,5,11,8
chr1	3764216	.	C	T	1218.03	PASS	AC=1;AF=0.58;AN=2;DP=1999;set=variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant16-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,22:76:99:545,0,1436:19,35,9,13
chr1	3765095	.	CA	CAAAA,C,CAA,CAAAAAAA,CAAAAAA,CAAAAA,CAAAAAAAAAA	207.8	PASS	AC=0,0,0,0,1,0,0;AF=0.032,0.145,0.032,0.032,0.226,0.081,0.016;AN=2;DP=706;set=variant-filterInvariant2-filterInvariant3-variant4-variant7-filterInvariant10-variant12-variant13-filterInvariant15-variant16-variant17-variant19-filterInvariant22-variant23-filterInvariant24-variant25-variant26-variant28-variant29-variant31-variant32-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43	GT:DP:GQ:SB	0/5:13:99:4,2,6,1
chr1	3773511	.	G	A	647.06	PASS	AC=1;AF=0.583;AN=2;DP=862;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant16-variant18-variant20-variant21-variant22-variant24-variant26-variant29-variant30-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:486,0,504:12,11,11,12
chr1	3773588	.	C	G	1380.53	PASS	AC=1;AF=0.615;AN=2;DP=1208;MQ=60;set=variant-variant4-variant7-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,31:53:99:809,0,607:12,10,18,13
chr1	3773718	.	A	G	2671.87	PASS	AC=2;AF=0.989;AN=2;DP=4568;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2348,234,0:0,0,43,35
chr1	3773815	.	C	G	1936.15	PASS	AC=1;AF=0.604;AN=2;DP=2240;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant16-variant18-variant20-variant21-variant22-variant24-variant26-variant29-variant30-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,49:92:99:1223,0,1101:23,20,27,22
chr1	3775454	.	C	G	2696.93	PASS	AC=2;AF=0.989;AN=2;DP=4562;MQ=60;MQRankSum=-0.24;ReadPosRankSum=-2.182;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3174,288,0:0,0,32,64
chr1	3782608	.	C	T	1645.17	PASS	AC=1;AF=0.744;AN=2;DP=2338;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,29:48:99:750,0,563:10,9,15,14
chr1	3784454	.	T	C	2893.14	PASS	AC=1;AF=0.542;AN=2;DP=1542;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant11-variant12-variant20-variant26-variant33-variant34-variant35-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,63:137:99:2432,0,4405:49,25,45,18
chr1	3784464	.	G	A	3056.24	PASS	AC=1;AF=0.5;AN=2;DP=1479;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant11-variant20-variant26-variant34-variant35-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,73:159:99:2616,0,4675:54,32,49,24
chr1	3786612	.	C	T	410.47	PASS	AC=1;AF=0.74;AN=2;DP=220;MQ=60;set=variant4-variant7-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:241,0,99:2,2,4,5
chr1	3800242	.	A	G	4758.38	PASS	AC=1;AF=0.731;AN=2;DP=6210;MQ=60;set=variant-variant4-variant7-variant9-variant11-variant14-variant17-variant19-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,92:216:99:2179,0,3132:69,55,46,46
chr1	3800480	.	G	T	3380.95	PASS	AC=1;AF=0.75;AN=2;DP=2729;MQ=60;set=variant-variant4-variant7-variant9-variant11-variant14-variant17-variant19-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,64:121:99:1405,0,1409:20,37,27,37
chr1	3801141	.	T	G	252.04	PASS	AC=1;AF=0.533;AN=2;DP=374;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant13-variant15-variant20-variant21-variant24-variant25-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:312,0,144:4,4,4,6
chr1	3801973	.	T	C	154.41	PASS	AC=1;AF=0.571;AN=2;DP=232;MQ=60;set=variant2-variant4-variant7-variant9-variant13-variant15-variant20-variant21-variant24-variant25-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:154,0,152:1,4,1,4
chr1	3802018	.	T	C	71.96	PASS	AC=1;AF=0.615;AN=2;DP=100;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant9-variant13-variant15-variant20-variant21-variant25-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:54:66,0,54:0,2,1,2
chr1	3806643	.	T	A	1367.65	PASS	AC=1;AF=0.593;AN=2;DP=1869;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:793,0,911:15,21,14,17
chr1	3807122	.	G	A	5360.65	PASS	AC=1;AF=0.583;AN=2;DP=2697;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,78:125:99:2178,0,1100:29,18,50,28
chr1	3807388	.	G	A	4323.32	PASS	AC=1;AF=0.583;AN=2;DP=2535;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,62:142:99:1610,0,2045:35,45,23,39
chr1	3807593	.	G	C	3277.02	PASS	AC=2;AF=1;AN=2;DP=4492;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3268,317,0:0,0,46,60
chr1	3809299	.	T	A	1212.43	PASS	AC=1;AF=0.5;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant-variant23-variant27-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,61:115:99:1534,0,2025:36,18,40,21
chr1	3809326	.	C	T	2412.93	PASS	AC=1;AF=0.583;AN=2;DP=2031;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,64:130:99:1794,0,2343:40,26,41,23
chr1	3816508	.	T	C	300.13	PASS	AC=1;AF=0.635;AN=2;DP=258;set=variant2-variant3-variant4-variant5-variant7-variant10-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:109,0,181:4,2,2,2
chr1	3816587	.	GC	G	1608.22	PASS	AC=1;AF=0.579;AN=2;DP=650;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:402,0,793:14,6,10,1
chr1	3816598	.	A	C	1916.3	PASS	AC=1;AF=0.579;AN=2;DP=765;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:533,0,834:14,6,12,1
chr1	3816604	.	G	A	1977.86	PASS	AC=1;AF=0.583;AN=2;DP=820;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:518,0,948:17,9,12,4
chr1	3816683	.	A	G	3477.96	PASS	AC=1;AF=0.579;AN=2;DP=2469;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,60:131:99:1416,0,1899:44,27,35,25
chr1	3816892	.	TCCCC	TCC,TCCC,TC,T,TCCCCC,TTCCCCC,TTCCCCCCCCCCCCCC,TTCCCCCC	1597.52	PASS	AC=0,1,0,0,0,0,0,0;AF=0.281,0.094,0.188,0.016,0.016,0.016,0.016,0.016;AN=2;DP=2708;MQ=60;set=variant-variant3-variant4-filterInvariant8-filterInvariant9-variant10-filterInvariant12-variant14-variant17-variant19-variant20-filterInvariant21-variant22-variant23-variant25-variant26-variant27-filterInvariant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:44:99:9,16,0,19
chr1	3816894	.	C	T	142.66	PASS	AC=1;AF=0.583;AN=2;DP=382;MQ=60;set=variant-variant17-variant27-filterInvariant34-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:30,13:43:99:136,0,766:9,21,0,13
chr1	3816950	.	C	T	49.42	PASS	AC=1;AF=0.577;AN=2;DP=391;MQ=60;set=variant2-variant4-variant7-variant13-variant15-filterInvariant20-variant21-variant24-variant25-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,8:32:99:260,0,900:1,23,1,7
chr1	4714789	.	CCCCACGCCCCGCGCTCCACGGCG	C	275.21	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant13-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:177,0,2418:6,5,5,0
chr1	4715211	.	G	A	135.27	PASS	AC=1;AF=0.5;AN=2;DP=87;FractionInformativeReads=1;MQ=60;set=variant13-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:166,0,427:7,11,2,6
chr1	4772717	.	G	A	1872.01	PASS	AC=2;AF=0.763;AN=2;DP=3684;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2846,251,0:0,0,24,60
chr1	4829795	.	C	T	222.54	PASS	AC=1;AF=0.533;AN=2;DP=298;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant12-variant13-variant20-variant31-variant32-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:454,0,363:9,3,11,2
chr1	4843111	.	C	T	753.89	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.577;QD=9.79;ReadPosRankSum=-2.537;SOR=0.648;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,36:77:99:782,0,1089:20,21,18,18
chr1	4847845	.	G	A	3069.62	PASS	AC=1;AF=0.762;AN=2;DP=13008;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:167,166:333:99:4201,0,4292:68,99,72,94
chr1	5623965	.	C	T	360.77	PASS	AC=1;AF=0.62;AN=2;DP=1288;MQ=60;set=variant-variant2-variant7-variant8-variant9-variant10-variant14-variant16-variant18-variant20-variant21-variant23-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,33:58:99:738,0,684:16,9,18,15
chr1	5716287	.	GA	G	127.06	PASS	AC=2;AF=0.767;AN=2;DP=111;FS=0;MQ=60;set=variant3-variant6-variant9-variant12-variant16-variant23-variant24-variant27-variant29-variant32-variant33-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:118,9,0:0,0,3,0
chr1	5873771	.	A	G	121.45	PASS	AC=1;AF=0.763;AN=2;DP=1037;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:239,0,343:6,8,5,5
chr1	5922834	.	C	A	663.6	PASS	AC=1;AF=0.525;AN=2;DP=1859;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant15-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,51:83:99:1227,0,751:17,15,23,28
chr1	5923788	.	T	G	110.6	PASS	AC=1;AF=0.7;AN=2;DP=583;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:167,0,221:5,3,4,2
chr1	5925040	.	G	A	131.97	PASS	AC=1;AF=0.529;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant15-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:286,0,213:6,0,7,3
chr1	5925371	.	G	A	387.48	PASS	AC=1;AF=0.65;AN=2;DP=1130;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:598,0,691:8,16,5,16
chr1	5926507	.	T	C	211.24	PASS	AC=1;AF=0.645;AN=2;DP=2714;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,42:77:99:916,0,772:18,17,18,24
chr1	5927031	.	A	G	539.72	PASS	AC=1;AF=0.528;AN=2;DP=970;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant15-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,30:46:99:746,0,370:10,6,18,12
chr1	5927169	.	G	A	1106.43	PASS	AC=1;AF=0.5;AN=2;DP=507;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant22-variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,46:92:99:1059,0,1005:20,26,25,21
chr1	5927738	.	G	A	400.36	PASS	AC=1;AF=0.528;AN=2;DP=644;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant15-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:803,0,641:17,3,20,5
chr1	5934236	.	C	T	87.97	PASS	AC=1;AF=0.771;AN=2;DP=242;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant15-variant17-variant18-variant19-variant22-variant26-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:99,0,283:6,2,2,1
chr1	5934380	.	C	T	642.81	PASS	AC=1;AF=0.5;AN=2;DP=297;MQ=60;set=variant3-variant11-variant22-variant25-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:615,0,706:16,9,16,6
chr1	5934490	.	A	G	2104.42	PASS	AC=1;AF=0.713;AN=2;DP=5956;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,86:157:99:2241,0,1636:41,30,50,36
chr1	5934837	.	C	T	143.99	PASS	AC=1;AF=0.649;AN=2;DP=1033;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,32:42:99:995,0,255:8,2,22,10
chr1	5935162	.	A	T	617.04	PASS	AC=1;AF=0.774;AN=2;DP=4113;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,46:106:99:1174,0,1530:25,35,18,28
chr1	5935222	.	T	C	527.56	PASS	AC=1;AF=0.648;AN=2;DP=1618;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant14-variant15-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,22:56:99:550,0,925:11,23,7,15
chr1	5937091	.	T	C	1532.33	PASS	AC=2;AF=0.943;AN=2;DP=3168;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2431,231,0:0,0,48,29
chr1	5937168	.	G	A	1023.47	PASS	AC=1;AF=0.617;AN=2;DP=3485;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,56:116:99:1378,0,1627:37,23,36,20
chr1	5937327	.	C	T	1217.22	PASS	AC=1;AF=0.533;AN=2;DP=2370;MQ=60;set=variant2-variant6-variant7-variant8-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:94,72:166:99:1768,0,2286:42,52,30,42
chr1	5937391	.	C	T	842.69	PASS	AC=2;AF=0.845;AN=2;DP=4673;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3458,285,0:0,0,37,58
chr1	5937413	.	A	C	864.78	PASS	AC=1;AF=0.609;AN=2;DP=2792;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,30:65:99:708,0,969:11,24,12,18
chr1	5939544	.	T	G	1909.86	PASS	AC=2;AF=0.845;AN=2;DP=5640;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3826,379,0:0,0,63,64
chr1	5947308	.	G	A	1446.95	PASS	AC=1;AF=0.533;AN=2;DP=1486;MQ=60;set=variant2-variant6-variant7-variant8-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,55:105:99:1565,0,1458:39,11,39,16
chr1	5948677	.	G	A	533.39	PASS	AC=2;AF=0.845;AN=2;DP=3461;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2521,243,0:0,0,41,40
chr1	5964991	.	T	C	549.75	PASS	AC=2;AF=0.849;AN=2;DP=3065;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2365,186,0:0,0,9,53
chr1	5965381	.	C	T	1558.21	PASS	AC=1;AF=0.533;AN=2;DP=2377;MQ=60;set=variant2-variant6-variant7-variant8-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,67:145:99:1661,0,1979:45,33,41,26
chr1	5987696	.	T	C	2224.04	PASS	AC=1;AF=0.533;AN=2;DP=2838;MQ=60;set=variant2-variant6-variant7-variant8-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,102:178:99:2599,0,1892:40,36,53,49
chr1	6027167	.	C	A	563.35	PASS	AC=1;AF=0.75;AN=2;DP=1476;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,17:45:99:496,0,757:17,11,14,3
chr1	6027252	.	A	G	1369.9	PASS	AC=1;AF=0.737;AN=2;DP=3091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,48:90:99:1235,0,1029:22,20,31,17
chr1	6029086	.	CAA	CA,C,CAAA	233.73	PASS	AC=1,0,0;AF=0.7,0.025,0.013;AN=2;DP=1570;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:25:99:8,3,11,3
chr1	6038583	.	G	C	559.42	PASS	AC=2;AF=0.884;AN=2;DP=1845;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1163,116,0:0,0,13,26
chr1	6046432	.	C	G	325.75	PASS	AC=1;AF=0.611;AN=2;DP=1024;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant18-variant19-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:603,0,470:9,10,9,12
chr1	6052581	.	G	A	974.21	PASS	AC=2;AF=0.841;AN=2;DP=4648;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2932,284,0:0,0,49,46
chr1	6094594	.	T	G	2883.24	PASS	AC=2;AF=0.966;AN=2;DP=5351;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:3943,386,0:0,0,59,70
chr1	6094800	.	G	A	1844.69	PASS	AC=1;AF=0.606;AN=2;DP=2131;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:520,0,487:11,10,8,14
chr1	6100458	.	G	A	1410.29	PASS	AC=1;AF=0.615;AN=2;DP=912;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant32-variant33-variant35-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:596,0,374:10,2,15,2
chr1	6111757	.	G	A	836.6	PASS	AC=1;AF=0.571;AN=2;DP=384;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant31-variant32-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:454,0,581:14,10,6,10
chr1	6145365	.	A	G	1924.69	PASS	AC=1;AF=0.703;AN=2;DP=2324;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,37:63:99:1157,0,755:4,22,9,28
chr1	6145379	.	C	T	644.19	PASS	AC=1;AF=0.5;AN=2;DP=846;MQ=60;set=variant2-variant3-variant6-variant7-variant17-variant21-variant27-variant28-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:914,0,505:2,15,4,24
chr1	6149053	.	C	T	1053.29	PASS	AC=1;AF=0.5;AN=2;DP=2031;MQ=60;set=variant2-variant3-variant6-variant7-variant21-variant27-variant28-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,58:129:99:1200,0,1690:37,34,29,29
chr1	6149122	.	G	A	484.36	PASS	AC=1;AF=0.5;AN=2;DP=1185;MQ=60;set=variant2-variant3-variant6-variant7-variant21-variant27-variant28-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,34:81:99:789,0,1162:21,26,14,20
chr1	6150637	.	C	T	942.45	PASS	AC=1;AF=0.645;AN=2;DP=1146;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:360,0,429:5,9,1,11
chr1	6154417	.	C	T	520.99	PASS	AC=1;AF=0.523;AN=2;DP=959;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant14-variant21-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,28:54:99:658,0,570:15,11,17,11
chr1	6155332	.	T	C	367.85	PASS	AC=2;AF=0.813;AN=2;DP=1183;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1109,102,0:0,0,22,12
chr1	6157282	.	C	T	898.55	PASS	AC=1;AF=0.615;AN=2;DP=1424;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:838,0,784:21,8,24,8
chr1	6157297	.	T	C	850.25	PASS	AC=1;AF=0.531;AN=2;DP=1090;MQ=60;set=variant2-variant3-variant6-variant7-variant21-variant27-variant28-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,33:79:99:858,0,1258:32,14,24,9
chr1	6157434	.	C	T	5624.79	PASS	AC=1;AF=0.655;AN=2;DP=7008;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,132:250:99:3441,0,3067:68,50,80,52
chr1	6157993	.	T	C	2287.13	PASS	AC=1;AF=0.596;AN=2;DP=2516;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,48:89:99:1261,0,972:24,17,25,23
chr1	6158147	.	C	T	491.09	PASS	AC=1;AF=0.531;AN=2;DP=1290;MQ=60;set=variant2-variant3-variant6-variant7-variant21-variant27-variant28-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,50:82:99:1273,0,720:11,21,24,26
chr1	6158562	.	A	G	5872.58	PASS	AC=2;AF=0.771;AN=2;DP=6184;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:5346,526,0:0,0,96,80
chr1	6159032	.	A	G	3269.35	PASS	AC=2;AF=0.8;AN=2;DP=4040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2987,285,0:0,0,51,44
chr1	6160563	.	A	G	4220.84	PASS	AC=2;AF=0.817;AN=2;DP=5439;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3608,330,0:0,0,58,52
chr1	6160692	.	G	GC	4464.14	PASS	AC=2;AF=0.817;AN=2;DP=5522;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:6302,430,0:0,0,66,72
chr1	6160698	.	A	G	4546.86	PASS	AC=2;AF=0.817;AN=2;DP=5443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:6381,436,0:0,0,70,72
chr1	6160876	.	A	G	3566.83	PASS	AC=2;AF=0.817;AN=2;DP=3829;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2683,243,0:0,0,37,44
chr1	6160958	.	A	G	2786.05	PASS	AC=2;AF=0.817;AN=2;DP=2605;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1870,159,0:0,0,21,32
chr1	6161075	.	T	A	1882.89	PASS	AC=2;AF=0.771;AN=2;DP=2120;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1568,161,0:0,0,26,28
chr1	6161100	.	T	TA	1835.83	PASS	AC=2;AF=0.771;AN=2;DP=2162;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1874,168,0:0,0,25,31
chr1	6162054	.	T	C	3897.04	PASS	AC=2;AF=0.782;AN=2;DP=3708;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2938,266,0:0,0,31,58
chr1	6162583	.	G	A	2927.62	PASS	AC=2;AF=0.797;AN=2;DP=5036;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4473,427,0:0,0,67,76
chr1	6163135	.	C	T	2252.29	PASS	AC=1;AF=0.596;AN=2;DP=2828;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,52:114:99:1943,0,3510:33,29,30,22
chr1	6163141	.	C	T	2420.23	PASS	AC=1;AF=0.596;AN=2;DP=2950;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,52:114:99:1957,0,3531:33,29,30,22
chr1	6163584	.	C	T	3165.44	PASS	AC=2;AF=0.742;AN=2;DP=4816;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3864,374,0:0,0,60,65
chr1	6163925	.	C	T	2031	PASS	AC=2;AF=0.795;AN=2;DP=1979;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1913,156,0:0,0,34,18
chr1	6164550	.	A	AGG	4096.8	PASS	AC=2;AF=0.742;AN=2;DP=3221;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:4084,288,0:0,0,48,47
chr1	6164671	.	A	G	840.86	PASS	AC=1;AF=0.523;AN=2;DP=1481;set=variant2-variant3-variant6-variant7-variant11-variant12-variant13-variant21-variant27-variant28-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,19:57:99:624,0,1498:16,22,7,12
chr1	6164678	.	GC	GGCCCC,GGCCC,G,GCAC,GGCC,GGCCCCC	696.46	PASS	AC=0,0,0,1,0,0;AF=0.079,0.184,0.132,0.079,0.026,0.026;AN=2;DP=1148;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant20-variant21-variant25-variant26-variant29-variant31-filterInvariant35-variant36-variant41-variant42	GT:DP:GQ:SB	0/4:47:99:6,30,11,0
chr1	6164679	.	C	G	2131.37	PASS	AC=1;AF=0.545;AN=2;DP=1983;set=variant2-variant3-variant4-variant5-variant6-filterInvariant7-filterInvariant8-variant11-variant12-variant13-variant14-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant31-filterInvariant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,9:50:81:81,0,1596:19,22,0,9
chr1	6164680	.	C	G,A	410.68	PASS	AC=0,1;AF=0.233,0.3;AN=2;DP=854;MQ=60;set=variant4-variant5-variant9-filterInvariant10-variant12-variant17-variant20-variant21-variant22-variant25-variant26-variant35-variant36-variant41-variant44	GT:DP:GQ:SB	0/2:47:99:16,10,1,20
chr1	6164688	.	CAG	C	597.67	PASS	AC=1;AF=0.5;AN=2;DP=1002;set=variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-filterInvariant15-variant25-variant26-variant29-variant31-filterInvariant35-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,11:45:99:252,0,1212:3,31,11,0
chr1	6164694	.	A	C	111.55	PASS	AC=1;AF=0.5;AN=2;DP=1074;set=variant-filterInvariant2-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant19-filterInvariant25-filterInvariant26-variant28-filterInvariant29-filterInvariant31-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,8:38:99:257,0,1222:2,28,8,0
chr1	6164698	.	T	C	88.15	PASS	AC=1;AF=0.5;AN=2;DP=1055;set=variant-filterInvariant2-filterInvariant4-filterInvariant5-variant6-filterInvariant7-filterInvariant8-filterInvariant10-variant11-variant12-filterInvariant13-filterInvariant15-filterInvariant19-filterInvariant25-filterInvariant26-variant28-filterInvariant29-variant31-filterInvariant36-variant37-filterInvariant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,7:35:99:202,0,1097:3,25,7,0
chr1	6170300	.	CACT	C	277.58	PASS	AC=1;AF=0.531;AN=2;DP=572;MQ=60;set=variant2-variant3-variant6-variant7-variant21-variant27-variant28-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,8:27:99:279,0,1018:10,9,4,4
chr1	6170424	.	CG	C	2986.32	PASS	AC=1;AF=0.606;AN=2;DP=3028;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,45:92:99:1538,0,1600:25,22,28,17
chr1	6172875	.	G	A	287.45	PASS	AC=1;AF=0.71;AN=2;DP=388;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant13-variant14-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:216,0,340:8,3,4,2
chr1	6173649	.	A	G	924.98	PASS	AC=1;AF=0.691;AN=2;DP=925;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:318,0,171:1,5,2,8
chr1	6184092	.	A	G	3619.87	PASS	AC=1;AF=0.714;AN=2;DP=4212;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,63:118:99:1481,0,1364:35,20,36,27
chr1	6184286	.	A	G	810.22	PASS	AC=1;AF=0.719;AN=2;DP=703;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:390,0,541:4,14,1,11
chr1	6184338	.	G	GGCCC	79.62	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=10;FractionInformativeReads=1;MQ=60;MQRankSum=0.406;QD=13.27;ReadPosRankSum=-0.406;SOR=2.776;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:117,0,142:0,3,3,0
chr1	6184342	.	A	C	85.7	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=8.451;FractionInformativeReads=1;MQ=60;MQRankSum=0.55;QD=12.24;ReadPosRankSum=0;SOR=2.788;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,184:1,3,3,0
chr1	6184346	.	T	C	85.7	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=8.451;FractionInformativeReads=1;MQ=60;MQRankSum=-1.3;QD=12.24;ReadPosRankSum=0;SOR=2.788;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,184:1,3,3,0
chr1	6184350	.	A	C	88.71	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=3.979;FractionInformativeReads=1;MQ=60;MQRankSum=0.988;QD=14.78;ReadPosRankSum=-1.537;SOR=2.8;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:117,0,142:1,2,3,0
chr1	6184886	.	G	T	108.46	PASS	AC=1;AF=0.5;AN=2;DP=41;FractionInformativeReads=1;MQ=60;set=variant7-variant31-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:288,0,139:4,2,5,4
chr1	6186961	.	A	G	449.81	PASS	AC=2;AF=1;AN=2;DP=659;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:458,33,0:0,0,1,10
chr1	6202423	.	C	A	1813.86	PASS	AC=1;AF=0.5;AN=2;DP=2151;MQ=60;set=variant5-variant9-variant12-variant17-variant22-variant25-variant29-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,80:172:99:1913,0,2494:45,47,38,42
chr1	6206648	.	C	A	520.02	PASS	AC=1;AF=0.5;AN=2;DP=279;MQ=60;set=variant2-variant4-variant7-variant14-variant18-variant27-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,21:37:99:643,0,473:10,6,14,7
chr1	6239937	.	C	CG	3062.91	PASS	AC=2;AF=1;AN=2;DP=2786;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2306,189,0:0,0,38,23
chr1	6257826	.	T	C	637.54	PASS	AC=1;AF=0.571;AN=2;DP=848;MQ=60;set=variant3-variant6-variant7-variant8-variant14-variant16-variant21-variant23-variant28-variant30-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,29:52:99:670,0,681:14,9,16,13
chr1	6257856	.	G	A	945.97	PASS	AC=1;AF=0.656;AN=2;DP=2111;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:729,0,795:15,14,14,17
chr1	6272434	.	G	A	525.88	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.119;QD=13.48;ReadPosRankSum=3.016;SOR=0.665;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:554,0,436:6,11,8,14
chr1	6305292	.	C	A	2193.57	PASS	AC=2;AF=0.708;AN=2;DP=2194;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,51:52:99:1550,146,0:1,0,28,23
chr1	6305303	.	C	A	2287.38	PASS	AC=2;AF=0.708;AN=2;DP=2149;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1691,167,0:0,0,31,25
chr1	6305600	.	A	C	1905.22	PASS	AC=1;AF=0.5;AN=2;DP=193;FS=0.527;FractionInformativeReads=1;MQ=60;MQRankSum=-0.565;QD=9.87;ReadPosRankSum=1.105;SOR=0.736;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:108,85:193:99:1933,0,2498:56,52,45,40
chr1	6307389	.	C	T	381.21	PASS	AC=2;AF=0.789;AN=2;DP=718;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:863,81,0:0,0,15,12
chr1	6308695	.	A	G	2045.73	PASS	AC=2;AF=0.731;AN=2;DP=2479;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2278,210,0:0,0,33,37
chr1	6309319	.	C	G	1832.33	PASS	AC=2;AF=0.736;AN=2;DP=2317;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1662,137,0:0,0,26,20
chr1	6313938	.	C	T	3373.14	PASS	AC=1;AF=0.75;AN=2;DP=4354;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,73:128:99:1788,0,1364:27,28,32,41
chr1	6314349	.	A	G	483.91	PASS	AC=1;AF=0.797;AN=2;DP=783;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:268,0,647:7,14,6,3
chr1	6314479	.	C	T	1344.56	PASS	AC=1;AF=0.736;AN=2;DP=2602;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,38:73:99:1104,0,909:25,10,28,10
chr1	6314822	.	T	C	3944.02	PASS	AC=1;AF=0.75;AN=2;DP=5555;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,83:159:99:2069,0,1843:35,41,41,42
chr1	6453520	.	C	CG	487.77	PASS	AC=2;AF=1;AN=2;DP=1186;FS=0;MQ=60;MQRankSum=-0.65;ReadPosRankSum=1.444;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:965,72,0:0,0,4,20
chr1	6453623	.	C	T	407.97	PASS	AC=1;AF=0.536;AN=2;DP=295;MQ=60;set=variant6-variant8-variant10-variant15-variant17-variant18-variant22-variant23-variant26-variant31-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:338,0,390:7,7,9,3
chr1	6453710	.	T	G	142.64	PASS	AC=1;AF=0.543;AN=2;DP=902;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant31-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:557,0,479:11,10,15,12
chr1	6453744	.	C	A	521.09	PASS	AC=1;AF=0.536;AN=2;DP=596;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant10-variant15-variant17-variant18-variant22-variant23-variant26-variant31-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:469,0,617:14,10,13,10
chr1	6476116	.	A	G	221.14	PASS	AC=1;AF=0.545;AN=2;DP=850;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:468,0,326:7,7,9,9
chr1	6476286	.	T	C	1164.99	PASS	AC=1;AF=0.55;AN=2;DP=843;MQ=60;set=variant6-variant8-variant15-variant18-variant22-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,29:67:99:764,0,1148:23,15,18,11
chr1	6476492	.	C	G	1510.39	PASS	AC=1;AF=0.55;AN=2;DP=1508;MQ=60;set=variant6-variant8-variant15-variant18-variant22-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,53:140:99:1298,0,2433:42,45,27,26
chr1	6477662	.	A	T	110.19	PASS	AC=1;AF=0.563;AN=2;DP=131;MQ=60;set=variant6-variant15-variant18-variant22-variant23-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:133,0,181:1,4,1,5
chr1	6479925	.	A	T	4136.56	PASS	AC=1;AF=0.55;AN=2;DP=2799;MQ=60;set=variant6-variant8-variant15-variant18-variant22-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:138,127:265:99:4831,0,7155:66,72,52,75
chr1	6479938	.	A	G	3295.15	PASS	AC=1;AF=0.536;AN=2;DP=3861;MQ=60;set=variant4-variant6-variant8-variant15-variant18-variant22-variant23-variant24-variant25-variant31-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,124:259:99:4701,0,7065:63,72,49,75
chr1	6484675	.	C	A	476.78	PASS	AC=1;AF=0.55;AN=2;DP=288;FractionInformativeReads=1;set=variant6-variant8-variant15-variant18-variant22-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:510,0,545:5,7,5,8
chr1	6484685	.	G	A	498.51	PASS	AC=1;AF=0.55;AN=2;DP=275;FractionInformativeReads=1;set=variant6-variant8-variant15-variant18-variant22-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:513,0,510:4,6,5,8
chr1	6484880	.	A	G	88.7	PASS	AC=1;AF=0.595;AN=2;DP=242;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant17-variant21-variant22-variant23-variant25-variant28-variant31-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:150,0,140:4,3,4,2
chr1	6489866	.	C	T	1023.39	PASS	AC=1;AF=0.556;AN=2;DP=513;FractionInformativeReads=1;set=variant6-variant8-variant15-variant22-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,35:57:99:859,0,541:14,8,20,15
chr1	6500547	.	G	A	240.61	PASS	AC=1;AF=0.563;AN=2;DP=201;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant23-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:329,0,485:4,13,1,10
chr1	6500919	.	T	C	2027.54	PASS	AC=1;AF=0.523;AN=2;DP=3133;set=variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant31-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,49:106:99:1286,0,1445:29,28,24,25
chr1	6508666	.	G	T	2378.5	PASS	AC=1;AF=0.5;AN=2;DP=204;FS=2.399;FractionInformativeReads=0.995;MQ=59.96;MQRankSum=-2.12;QD=11.66;ReadPosRankSum=0.549;SOR=0.799;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:98,105:203:99:2407,0,2297:48,50,56,49
chr1	6520312	.	C	T	439.96	PASS	AC=1;AF=0.5;AN=2;DP=316;FractionInformativeReads=1;MQ=60;set=variant16-variant18-variant22-variant27-variant31-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:652,0,454:10,6,13,10
chr1	6525347	.	A	C	112.85	PASS	AC=1;AF=0.5;AN=2;DP=273;set=variant6-filterInvariant10-variant12-variant13-variant15-variant19-variant22-variant23-variant25-variant27-variant32-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:197,0,795:3,13,7,0
chr1	6525351	.	T	C	61.31	PASS	AC=1;AF=0.5;AN=2;DP=162;set=variant3-variant6-variant12-variant15-variant25-variant27-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,5:22:99:152,0,1549:4,13,5,0
chr1	6525356	.	T	C	184.57	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;set=variant12-variant13-variant19-variant23-variant25-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,4:24:99:105,0,1667:6,14,4,0
chr1	6525360	.	T	C	181.56	PASS	AC=1;AF=0.5;AN=2;DP=152;FractionInformativeReads=1;set=variant12-variant13-variant19-variant23-variant25-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:19,4:23:99:105,0,1609:6,13,4,0
chr1	6525364	.	T	C	178.55	PASS	AC=1;AF=0.5;AN=2;DP=114;FractionInformativeReads=1;set=variant12-variant13-variant25-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:24,4:28:90:90,0,1782:10,14,4,0
chr1	6525366	.	T	C	61.47	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=6.495;FractionInformativeReads=1;MQ=60;MQRankSum=0.967;QD=2.12;ReadPosRankSum=-1.754;SOR=2.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,3:29:90:90,0,1782:12,14,3,0
chr1	6530965	.	C	CG	3491.46	PASS	AC=2;AF=1;AN=2;DP=5226;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3797,343,0:0,0,49,65
chr1	6534046	.	T	C	58.56	PASS	AC=1;AF=0.5;AN=2;DP=228;set=variant2-variant5-variant7-variant11-variant16-variant19-variant29-variant31-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:79:79,0,168:3,4,4,0
chr1	6579607	.	C	T	1060.79	PASS	AC=1;AF=0.849;AN=2;DP=4428;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,54:108:99:1335,0,1432:26,28,27,27
chr1	6579653	.	G	C	1041.69	PASS	AC=1;AF=0.542;AN=2;DP=1048;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,54:106:99:1470,0,1273:27,25,21,33
chr1	6579843	.	C	T	543.34	PASS	AC=1;AF=0.849;AN=2;DP=3133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,40:62:99:1132,0,539:10,12,18,22
chr1	6580236	.	G	C	225.3	PASS	AC=2;AF=1;AN=2;DP=342;FS=0;MQ=60;MQRankSum=0.747;ReadPosRankSum=0.747;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:416,39,0:0,0,4,9
chr1	6580250	.	C	T	73.47	PASS	AC=1;AF=0.888;AN=2;DP=259;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:195,0,108:2,3,2,5
chr1	6581877	.	G	A	496.96	PASS	AC=1;AF=0.849;AN=2;DP=2012;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:487,0,589:10,13,8,10
chr1	6583183	.	C	T	507.97	PASS	AC=1;AF=0.542;AN=2;DP=450;FractionInformativeReads=1;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:722,0,812:21,3,20,2
chr1	6583231	.	G	A	1802.25	PASS	AC=1;AF=0.538;AN=2;DP=1526;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,61:123:99:2062,0,1890:38,24,38,23
chr1	6583232	.	A	G	1784.46	PASS	AC=1;AF=0.538;AN=2;DP=1536;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,49:113:99:1031,0,2027:39,25,28,21
chr1	6583270	.	C	G	2244.38	PASS	AC=1;AF=0.542;AN=2;DP=2183;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:92,91:183:99:2398,0,2265:51,41,51,40
chr1	6583701	.	T	C	124.46	PASS	AC=1;AF=0.872;AN=2;DP=712;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:104,0,140:4,0,3,1
chr1	6584024	.	A	G	3101.9	PASS	AC=2;AF=1;AN=2;DP=3147;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2446,213,0:0,0,48,23
chr1	6584045	.	C	G	1773.18	PASS	AC=1;AF=0.545;AN=2;DP=972;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,43:91:99:1036,0,1459:34,14,25,18
chr1	6584101	.	A	G	2408.22	PASS	AC=1;AF=0.849;AN=2;DP=8120;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,78:160:99:2094,0,2012:46,36,53,25
chr1	6584311	.	G	GTA	6675.77	PASS	AC=2;AF=1;AN=2;DP=7025;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:5248,369,0:0,0,48,72
chr1	6584420	.	C	A	1026.38	PASS	AC=1;AF=0.542;AN=2;DP=783;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,23:59:99:577,0,1159:15,21,8,15
chr1	6584657	.	T	C	400.2	PASS	AC=1;AF=0.542;AN=2;DP=630;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:708,0,742:12,16,8,18
chr1	6584804	.	A	T	90.69	PASS	AC=1;AF=0.556;AN=2;DP=87;MQ=60;set=variant-variant2-variant15-variant23-variant30-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:116,0,283:2,7,1,4
chr1	6585021	.	A	G	727.76	PASS	AC=2;AF=1;AN=2;DP=828;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:658,48,0:0,0,15,1
chr1	6585539	.	C	T	877.11	PASS	AC=1;AF=0.86;AN=2;DP=3064;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,36:65:99:856,0,649:15,14,17,19
chr1	6585804	.	C	T	2897.12	PASS	AC=1;AF=0.86;AN=2;DP=8502;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,97:197:99:2473,0,2309:51,49,51,46
chr1	6586070	.	C	T	3301.43	PASS	AC=2;AF=1;AN=2;DP=5460;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4168,399,0:0,0,53,80
chr1	6591937	.	T	C	231.21	PASS	AC=1;AF=0.86;AN=2;DP=1078;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:635,0,667:19,2,16,4
chr1	6592377	.	A	G	797.25	PASS	AC=1;AF=0.542;AN=2;DP=768;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,29:54:99:812,0,725:19,6,18,11
chr1	6593532	.	G	A	1034.81	PASS	AC=1;AF=0.542;AN=2;DP=951;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:827,0,937:15,19,11,20
chr1	6602206	.	A	C	225.37	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.449;QD=11.86;ReadPosRankSum=0.122;SOR=0.582;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:254,0,289:2,8,2,7
chr1	6602223	.	ATT	AT,A	196.32	PASS	AC=1,0;AF=0.893,0.036;AN=2;DP=571;FS=0;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:8:1:0,1,1,6
chr1	6602241	.	C	A	74.01	PASS	AC=1;AF=0.859;AN=2;DP=321;FS=0;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:67:67,0,311:1,7,0,3
chr1	6609559	.	C	A	381.53	PASS	AC=1;AF=0.826;AN=2;DP=998;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:219,0,257:7,0,6,0
chr1	6609563	.	CAT	C	538.95	PASS	AC=1;AF=0.531;AN=2;DP=418;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant14-variant15-variant18-variant22-variant23-variant30-variant31-variant32-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:231,0,267:7,0,6,0
chr1	6609792	.	G	GT	2295.51	PASS	AC=1;AF=0.536;AN=2;DP=1983;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,61:130:99:1873,0,2189:30,39,28,33
chr1	6609851	.	A	G	2564.77	PASS	AC=2;AF=1;AN=2;DP=3557;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2292,224,0:0,0,29,46
chr1	6609896	.	G	A	688.06	PASS	AC=1;AF=0.826;AN=2;DP=1731;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,27:43:99:760,0,466:4,12,7,20
chr1	6610366	.	T	C	408.01	PASS	AC=1;AF=0.826;AN=2;DP=1166;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:239,0,431:10,6,7,1
chr1	6610382	.	C	T	629.57	PASS	AC=1;AF=0.826;AN=2;DP=1604;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:328,0,513:12,6,9,3
chr1	6614230	.	G	A	1428.89	PASS	AC=1;AF=0.536;AN=2;DP=1135;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant14-variant15-variant22-variant23-variant30-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:604,0,871:20,16,13,13
chr1	6614391	.	A	C	3608.65	PASS	AC=2;AF=0.977;AN=2;DP=2981;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2222,159,0:0,0,26,25
chr1	6614415	.	A	G	3283.05	PASS	AC=2;AF=1;AN=2;DP=3048;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2030,147,0:0,0,25,24
chr1	6614535	.	G	A	954.05	PASS	AC=1;AF=0.826;AN=2;DP=4212;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,45:86:99:915,0,893:17,24,21,24
chr1	6614653	.	C	G	237.44	PASS	AC=1;AF=0.826;AN=2;DP=970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:157,0,371:2,9,0,5
chr1	6615690	.	A	G	123.13	PASS	AC=1;AF=0.849;AN=2;DP=1388;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:828,0,1029:2,13,6,15
chr1	6615695	.	C	T	123.13	PASS	AC=1;AF=0.833;AN=2;DP=1257;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:798,0,999:2,12,6,14
chr1	6631245	.	C	T	692.46	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.83;QD=14.43;ReadPosRankSum=-0.282;SOR=0.627;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,28:48:99:721,0,498:6,14,9,19
chr1	6631319	.	G	A	145.31	PASS	AC=2;AF=1;AN=2;DP=684;FS=0;MQ=60;MQRankSum=0.714;ReadPosRankSum=0.51;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:385,27,0:0,0,0,9
chr1	6635231	.	A	G	4317.86	PASS	AC=2;AF=1;AN=2;DP=8324;FS=0;MQ=60;MQRankSum=1.323;ReadPosRankSum=1.689;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:6454,599,0:0,0,121,79
chr1	6637171	.	G	A	675.39	PASS	AC=1;AF=0.536;AN=2;DP=609;MQ=60;set=variant-variant2-variant8-variant14-variant15-variant18-variant22-variant23-variant27-variant30-variant31-variant32-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:570,0,634:4,16,3,15
chr1	6639847	.	G	T	320.52	PASS	AC=1;AF=0.563;AN=2;DP=388;FractionInformativeReads=1;MQ=60;set=variant13-variant21-variant23-variant24-variant33-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,28:49:99:728,0,460:11,10,12,16
chr1	6640261	.	C	T	280.91	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=2.093;FractionInformativeReads=1;MQ=60;MQRankSum=-0.775;QD=12.21;ReadPosRankSum=-0.899;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:309,0,436:2,11,3,7
chr1	6646959	.	GCCTGCCTTC	G	4676.85	PASS	AC=1;AF=0.833;AN=2;DP=6782;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,74:150:99:2814,0,3839:33,43,31,43
chr1	6651450	.	CA	C	92.32	PASS	AC=1;AF=0.63;AN=2;DP=1035;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:563,0,339:5,9,7,14
chr1	6651728	.	C	T	583.89	PASS	AC=1;AF=0.66;AN=2;DP=1098;MQ=60;set=variant-variant4-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-filterInvariant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:509,0,438:8,9,11,10
chr1	6652718	.	G	A	556.05	PASS	AC=1;AF=0.615;AN=2;DP=1807;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:684,0,831:13,15,10,15
chr1	6652745	.	G	A	644.1	PASS	AC=1;AF=0.63;AN=2;DP=1819;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,22:55:99:571,0,876:14,19,9,13
chr1	6659578	.	G	A	477.12	PASS	AC=1;AF=0.5;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:885,0,949:7,22,3,25
chr1	6673780	.	C	G	250.21	PASS	AC=1;AF=0.62;AN=2;DP=1037;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant14-variant15-variant16-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:529,0,473:8,10,9,14
chr1	6677064	.	A	G	166.78	PASS	AC=1;AF=0.69;AN=2;DP=394;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant29-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:335,0,424:2,9,1,9
chr1	6679848	.	C	T	884.41	PASS	AC=1;AF=0.62;AN=2;DP=1553;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant14-variant15-variant16-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,35:62:99:917,0,709:15,12,17,18
chr1	6681375	.	C	T	1378.1	PASS	AC=1;AF=0.62;AN=2;DP=2331;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant14-variant15-variant16-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,45:96:99:999,0,1239:30,21,26,19
chr1	6681744	.	C	T	1502.47	PASS	AC=2;AF=0.838;AN=2;DP=2635;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1931,176,0:0,0,22,37
chr1	6683240	.	G	A	470.26	PASS	AC=1;AF=0.667;AN=2;DP=1383;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant29-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:434,0,578:11,13,6,11
chr1	6683565	.	GA	G	962.27	PASS	AC=2;AF=0.838;AN=2;DP=1437;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:791,84,0:0,0,15,13
chr1	6684906	.	C	G	636.43	PASS	AC=1;AF=0.635;AN=2;DP=1506;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,30:57:99:793,0,567:14,13,17,13
chr1	6685442	.	A	G	679.65	PASS	AC=2;AF=0.833;AN=2;DP=741;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:408,36,0:0,0,5,7
chr1	6690140	.	A	G	923.42	PASS	AC=2;AF=0.833;AN=2;DP=796;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:673,57,0:0,0,15,4
chr1	6692273	.	C	CA,CAA	252.53	PASS	AC=2,0;AF=0.671,0.013;AN=2;DP=642;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:13:16:1,0,10,2
chr1	6693097	.	A	G	674.72	PASS	AC=1;AF=0.696;AN=2;DP=1591;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant17-variant19-variant22-variant29-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,36:86:99:952,0,1488:20,30,12,24
chr1	6693641	.	C	CATT	346.46	PASS	AC=1;AF=0.705;AN=2;DP=590;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant12-variant13-variant17-variant19-variant22-variant29-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:588,0,595:5,9,7,8
chr1	6694207	.	A	G	1393.62	PASS	AC=1;AF=0.696;AN=2;DP=2800;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant17-variant19-variant22-variant29-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,65:133:99:1673,0,1604:30,38,29,36
chr1	6694574	.	G	A	1038.33	PASS	AC=1;AF=0.696;AN=2;DP=2374;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant17-variant19-variant22-variant29-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,42:90:99:1056,0,1428:29,19,26,16
chr1	6694927	.	C	T	999	PASS	AC=1;AF=0.635;AN=2;DP=2347;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,64:106:99:1605,0,858:23,19,32,32
chr1	6694980	.	G	A	2050.71	PASS	AC=2;AF=0.813;AN=2;DP=3052;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,87:88:99:2608,253,0:1,0,37,50
chr1	6695123	.	C	T	933.68	PASS	AC=2;AF=0.825;AN=2;DP=1672;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1500,135,0:0,0,17,28
chr1	6695244	.	A	G	775.01	PASS	AC=2;AF=0.825;AN=2;DP=1676;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1301,111,0:0,0,24,13
chr1	6695331	.	G	T	390.24	PASS	AC=1;AF=0.696;AN=2;DP=1168;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant17-variant19-variant22-variant29-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:540,0,870:18,13,14,12
chr1	6695802	.	A	G	3501.87	PASS	AC=2;AF=0.825;AN=2;DP=4032;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2894,291,0:0,0,42,55
chr1	6704635	.	A	G	3168.36	PASS	AC=2;AF=0.943;AN=2;DP=6023;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3493,339,0:0,0,54,59
chr1	6705874	.	G	C	2062.55	PASS	AC=1;AF=0.594;AN=2;DP=2204;MQ=60;set=variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant20-variant21-variant23-variant24-variant27-variant33-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,65:124:99:1748,0,1450:34,25,41,24
chr1	6713114	.	C	T	272.91	PASS	AC=1;AF=0.635;AN=2;DP=712;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:626,0,389:2,11,2,16
chr1	6866978	.	G	A	366.29	PASS	AC=2;AF=0.688;AN=2;DP=897;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:847,72,0:0,0,20,4
chr1	6931643	.	T	TA	334.45	PASS	AC=1;AF=0.6;AN=2;DP=370;MQ=60;set=variant5-variant7-variant11-variant13-variant20-variant24-variant27-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,17:49:99:337,0,764:20,12,13,4
chr1	7151479	.	T	C	1381.15	PASS	AC=1;AF=0.571;AN=2;DP=1659;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant10-variant11-variant15-variant16-variant17-variant18-variant23-variant27-variant29-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,43:86:99:1073,0,1260:23,20,16,27
chr1	7289606	.	T	G,A	239.08	PASS	AC=2,0;AF=0.986,0.014;AN=2;DP=232;FS=0;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:2:6:0,0,2,0
chr1	7289612	.	T	G	239.08	PASS	AC=2;AF=1;AN=2;DP=266;FS=0;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:18:270,18,0:0,0,5,0
chr1	7289619	.	G	A	230.83	PASS	AC=2;AF=1;AN=2;DP=314;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,6,0
chr1	7289654	.	G	A	454.21	PASS	AC=1;AF=0.5;AN=2;DP=93;FS=0;MQ=60;set=variant10-variant13-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:217,0,333:8,1,7,0
chr1	7289777	.	G	A	887.36	PASS	AC=2;AF=0.77;AN=2;DP=2999;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2015,212,0:0,0,36,35
chr1	7289874	.	T	C	315.1	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.333;QD=12.6;ReadPosRankSum=-0.245;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:343,0,324:4,9,3,9
chr1	7289959	.	A	G	61.77	PASS	AC=2;AF=0.87;AN=2;DP=150;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant21-variant22-variant24-variant25-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	7527996	.	T	C	1384.13	PASS	AC=2;AF=0.7;AN=2;DP=3665;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,103:104:99:3553,280,0:0,1,22,81
chr1	7723957	.	G	A	2098.24	PASS	AC=2;AF=0.652;AN=2;DP=8791;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,234:234:99:7624,700,0:0,0,123,111
chr1	7725284	.	C	A	667.23	PASS	AC=2;AF=0.586;AN=2;DP=1402;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant12-variant13-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,52:53:99:1717,149,0:1,0,17,35
chr1	7737799	.	A	G	802.62	PASS	AC=1;AF=0.657;AN=2;DP=4133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,58:124:99:1407,0,1735:21,45,21,37
chr1	7792411	.	C	T	764.08	PASS	AC=2;AF=0.667;AN=2;DP=1725;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1810,161,0:0,0,37,17
chr1	7792755	.	T	G	365.18	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.732;QD=15.22;ReadPosRankSum=0.029;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:393,0,302:2,8,3,11
chr1	7796641	.	A	G	181.4	PASS	AC=2;AF=0.677;AN=2;DP=1394;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,47:48:99:1581,105,0:1,0,18,29
chr1	7797734	.	T	A	1012.26	PASS	AC=2;AF=0.816;AN=2;DP=1535;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1400,123,0:0,0,14,27
chr1	7807897	.	A	G	2841.14	PASS	AC=2;AF=0.802;AN=2;DP=4410;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2474,260,0:0,0,36,51
chr1	7807966	.	GT	G	679.59	PASS	AC=2;AF=0.756;AN=2;DP=1971;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:594,69,0:0,0,4,19
chr1	7808031	.	G	T	220.7	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.742;QD=31.53;ReadPosRankSum=-0.742;SOR=2.584;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:24:249,0,24:0,1,0,6
chr1	7809728	.	C	CT	378.43	PASS	AC=1;AF=0.709;AN=2;DP=1021;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,13:15:8:298,0,8:1,1,12,1
chr1	7810945	.	C	T	354.64	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=2.473;FractionInformativeReads=1;MQ=60;MQRankSum=0.76;QD=17.73;ReadPosRankSum=2.203;SOR=1.659;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:383,0,264:7,2,10,1
chr1	7811014	.	G	A	1685.3	PASS	AC=2;AF=0.791;AN=2;DP=2474;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1750,182,0:0,0,37,24
chr1	7811215	.	A	G	2823.19	PASS	AC=2;AF=0.791;AN=2;DP=3616;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,60:62:99:1839,137,0:1,1,30,30
chr1	7812398	.	A	G	262.01	PASS	AC=2;AF=0.864;AN=2;DP=198;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:300,21,0:0,0,7,0
chr1	7826313	.	A	AT	619.2	PASS	AC=1;AF=0.806;AN=2;DP=782;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:242,0,349:11,4,9,3
chr1	7826347	.	C	T	1229.57	PASS	AC=2;AF=0.909;AN=2;DP=1692;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1390,129,0:0,0,29,14
chr1	7827441	.	T	A	2325.16	PASS	AC=1;AF=0.567;AN=2;DP=925;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant13-variant20-variant24-variant26-variant29-variant30-variant31-variant32-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,33:47:99:964,0,313:6,8,19,14
chr1	7828120	.	C	G	926.8	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=3.573;FractionInformativeReads=1;MQ=60;MQRankSum=-1.253;QD=8.27;ReadPosRankSum=-0.718;SOR=0.61;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,42:112:99:955,0,1613:39,31,20,22
chr1	7828173	.	TAAAAA	TAAA,TAAAA,T,TAA,TA	988.58	PASS	AC=2,0,0,0,0;AF=0.227,0.295,0.193,0.216,0.011;AN=2;DP=3661;set=Intersection	GT:DP:GQ:SB	1/1:44:99:0,2,19,23
chr1	7828278	.	CA	C	1013.14	PASS	AC=1;AF=0.849;AN=2;DP=2781;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,32:63:99:713,0,671:16,15,18,14
chr1	7829063	.	AT	A	7371.39	PASS	AC=1;AF=0.567;AN=2;DP=3645;MQ=60;set=variant3-variant4-variant8-variant13-variant20-variant24-variant26-variant29-variant30-variant31-variant32-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:89,75:164:99:1640,0,2034:41,48,31,44
chr1	7829107	.	G	A	3472.62	PASS	AC=1;AF=0.5;AN=2;DP=1589;MQ=60;set=variant3-variant8-variant13-variant24-variant26-variant30-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,63:134:99:1867,0,1695:28,43,21,42
chr1	7829226	.	A	G	3168.85	PASS	AC=2;AF=1;AN=2;DP=3208;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.544;ReadPosRankSum=0.396;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2462,204,0:0,0,33,35
chr1	7831552	.	C	T	380.51	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=1.967;FractionInformativeReads=1;MQ=60;MQRankSum=0.973;QD=12.27;ReadPosRankSum=-1.409;SOR=0.275;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:409,0,561:2,15,3,11
chr1	7840926	.	G	C	764.8	PASS	AC=1;AF=0.795;AN=2;DP=2170;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,29:55:99:858,0,834:5,21,10,19
chr1	7841089	.	G	A	380.9	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.779;QD=7.05;ReadPosRankSum=-1.902;SOR=0.709;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,19:54:99:409,0,972:20,15,11,8
chr1	7841549	.	A	C	563.09	PASS	AC=2;AF=0.93;AN=2;DP=588;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:496,36,0:0,0,2,10
chr1	7844680	.	T	C	422.99	PASS	AC=2;AF=0.767;AN=2;DP=1022;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:858,78,0:0,0,18,8
chr1	7847063	.	A	G	73.83	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.55;QD=10.55;ReadPosRankSum=-0.937;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:102,0,158:0,4,0,3
chr1	7847362	.	C	CT	1013.52	PASS	AC=2;AF=0.989;AN=2;DP=1276;FS=0;MQ=60;MQRankSum=0.68;ReadPosRankSum=-0.211;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:746,72,0:0,0,20,4
chr1	7858525	.	G	GT	646.69	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=1.588;FractionInformativeReads=0.975;MQ=60;MQRankSum=0.785;QD=16.17;ReadPosRankSum=0.528;SOR=1.214;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:684,0,431:12,4,19,4
chr1	7861153	.	C	CT	839.38	PASS	AC=1;AF=0.658;AN=2;DP=2178;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,35:62:99:987,0,741:13,14,18,17
chr1	7861304	.	T	C	558.95	PASS	AC=1;AF=0.597;AN=2;DP=955;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:211,0,335:4,8,2,7
chr1	7861345	.	G	A	242.82	PASS	AC=1;AF=0.662;AN=2;DP=464;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:101,0,199:1,5,1,3
chr1	7863293	.	C	T	656.37	PASS	AC=1;AF=0.649;AN=2;DP=1298;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:509,0,238:5,8,5,14
chr1	7863331	.	T	C	99.15	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.092;QD=7.63;ReadPosRankSum=0.212;SOR=0.33;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:127,0,272:1,7,1,4
chr1	7864111	.	A	G	111.92	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.219;QD=12.44;ReadPosRankSum=-1.881;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:140,0,114:1,3,1,4
chr1	7869915	.	G	C	2617.21	PASS	AC=2;AF=0.989;AN=2;DP=3567;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2280,222,0:0,0,43,31
chr1	7870048	.	T	C	4008.62	PASS	AC=2;AF=0.966;AN=2;DP=4639;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2694,270,0:0,0,40,50
chr1	7870144	.	A	C	2322.83	PASS	AC=2;AF=0.989;AN=2;DP=3008;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2151,195,0:0,0,26,39
chr1	7880469	.	A	G	507.77	PASS	AC=1;AF=0.663;AN=2;DP=1574;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:633,0,607:14,5,13,9
chr1	7887493	.	T	C	6582.06	PASS	AC=2;AF=0.989;AN=2;DP=12069;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,257:257:99:7830,770,0:0,0,135,122
chr1	7890064	.	A	G	1593.74	PASS	AC=1;AF=0.56;AN=2;DP=6508;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,134:276:99:3558,0,3851:57,85,65,69
chr1	7890332	.	TC	T	395.58	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=0;FractionInformativeReads=0.786;MQ=60;MQRankSum=1.79;QD=9.42;ReadPosRankSum=2.079;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:433,0,587:4,14,4,11
chr1	7896974	.	CAAG	C	101.46	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=3.09;FractionInformativeReads=1;MQ=60;MQRankSum=0.597;QD=9.22;ReadPosRankSum=0;SOR=1.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:139,0,325:5,2,4,0
chr1	7902559	.	C	CAA,CA	59.28	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=18;MQ=60;set=variant23-variant41	GT:DP:GQ:SB	0/2:11:85:3,3,5,0
chr1	7904247	.	C	T	11453.9	PASS	AC=2;AF=0.989;AN=2;DP=14073;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,284:284:99:9036,851,0:0,0,159,125
chr1	7904475	.	G	A	20838	PASS	AC=2;AF=0.989;AN=2;DP=23485;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,474:474:99:15050,1421,0:0,0,228,246
chr1	7906476	.	G	T	4185.69	PASS	AC=2;AF=0.989;AN=2;DP=6794;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4541,437,0:0,0,89,57
chr1	7906914	.	T	C	3090.08	PASS	AC=1;AF=0.563;AN=2;DP=1357;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant13-variant20-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,51:103:99:1360,0,1292:28,24,17,34
chr1	7907620	.	A	ATAAT	3076.95	PASS	AC=1;AF=0.667;AN=2;DP=5830;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,68:177:99:2696,0,6035:70,39,44,24
chr1	7911099	.	C	T	1083.31	PASS	AC=1;AF=0.571;AN=2;DP=393;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant10-variant13-variant20-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:359,0,293:3,8,1,10
chr1	7913029	.	A	G	1469.03	PASS	AC=1;AF=0.545;AN=2;DP=1464;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant12-variant16-variant26-variant31-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,65:124:99:1586,0,1587:39,20,38,27
chr1	7913184	.	CA	C,CAA	410.14	PASS	AC=1,0;AF=0.511,0.011;AN=2;DP=7987;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:159:99:61,63,21,14
chr1	7913430	.	G	A	1932.03	PASS	AC=1;AF=0.721;AN=2;DP=5519;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,79:150:99:2241,0,2727:40,31,50,29
chr1	7913445	.	C	T	2355.73	PASS	AC=1;AF=0.545;AN=2;DP=1785;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant12-variant16-variant26-variant31-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,78:159:99:2310,0,3139:49,32,45,33
chr1	7980338	.	A	G	1369.21	PASS	AC=1;AF=0.5;AN=2;DP=1033;MQ=60;set=variant18-variant22-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:122,97:219:99:2380,0,2846:61,61,47,50
chr1	7980364	.	CTT	CT,CTTT,C,CTTTT,CTTTTT	898.58	PASS	AC=0,0,0,1,0;AF=0.415,0.098,0.012,0.012,0.012;AN=2;DP=9879;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:117:99:27,47,21,22
chr1	7980708	.	CA	CAA,C	225.71	PASS	AC=0,1;AF=0.313,0.188;AN=2;DP=200;set=variant3-variant8-variant12-filterInvariant13-variant14-filterInvariant19-variant29-variant41	GT:DP:GQ:SB	0/2:17:97:8,3,4,2
chr1	7998963	.	T	G	2608.56	PASS	AC=2;AF=0.989;AN=2;DP=3898;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2174,210,0:0,0,27,43
chr1	8021778	.	T	C	2307.24	PASS	AC=1;AF=0.765;AN=2;DP=5785;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,84:166:99:1933,0,2168:49,33,40,44
chr1	8022800	.	CT	C,CTT	153.38	PASS	AC=1,0;AF=0.472,0.028;AN=2;DP=1297;set=variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-filterInvariant17-filterInvariant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:26:96:13,4,8,1
chr1	8029509	.	G	A	420.17	PASS	AC=1;AF=0.5;AN=2;DP=368;MQ=60;set=variant-variant2-variant6-variant9-variant12-variant16-variant31-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:348,0,902:8,11,3,8
chr1	8029510	.	G	A	437.06	PASS	AC=1;AF=0.542;AN=2;DP=418;MQ=60;set=variant-variant2-variant6-variant9-variant12-variant16-variant18-variant31-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:364,0,902:8,11,3,8
chr1	8074678	.	A	G	685.18	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=5.362;FractionInformativeReads=1;MQ=60;MQRankSum=-0.191;QD=11.61;ReadPosRankSum=1.275;SOR=1.419;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:713,0,904:17,16,9,17
chr1	8377828	.	G	A	314.62	PASS	AC=1;AF=0.671;AN=2;DP=1014;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:205,0,280:7,3,6,1
chr1	8384268	.	T	C	1485.9	PASS	AC=2;AF=0.989;AN=2;DP=2384;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2075,186,0:0,0,37,25
chr1	8390051	.	G	A	133.71	PASS	AC=1;AF=0.643;AN=2;DP=462;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:300,0,312:8,1,6,4
chr1	8390246	.	T	C	793.61	PASS	AC=1;AF=0.611;AN=2;DP=1364;MQ=60;set=variant-variant3-variant7-variant8-variant10-variant11-variant13-variant17-variant25-variant26-variant29-variant31-variant32-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,29:62:99:860,0,814:22,11,20,9
chr1	8390495	.	A	G	1028.25	PASS	AC=2;AF=0.85;AN=2;DP=3622;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3164,300,0:0,0,53,48
chr1	8390888	.	G	A	954.31	PASS	AC=1;AF=0.614;AN=2;DP=1999;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant10-variant11-variant13-variant17-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,39:84:99:920,0,1138:23,22,18,21
chr1	8395441	.	T	C	7127.44	PASS	AC=1;AF=0.647;AN=2;DP=8006;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,118:246:99:2726,0,3078:78,50,69,49
chr1	8397803	.	C	T	1186.67	PASS	AC=1;AF=0.579;AN=2;DP=1801;MQ=60;set=variant5-variant6-variant7-variant9-variant12-variant16-variant18-variant21-variant28-variant29-variant30-variant31-variant34-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,39:95:99:974,0,1509:36,20,28,11
chr1	8404093	.	C	T	477.99	PASS	AC=1;AF=0.625;AN=2;DP=1345;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant13-variant15-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant33-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:661,0,880:14,20,8,19
chr1	8404169	.	T	A	962.34	PASS	AC=2;AF=1;AN=2;DP=2266;FS=0;MQ=60;MQRankSum=0.037;ReadPosRankSum=1.585;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1177,105,0:0,0,12,23
chr1	8412935	.	C	T	100.7	PASS	AC=1;AF=0.597;AN=2;DP=1018;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,11:36:99:262,0,687:12,13,4,7
chr1	8412989	.	A	G	103.58	PASS	AC=1;AF=0.798;AN=2;DP=1287;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:190,0,488:10,11,4,5
chr1	8418644	.	C	A	3061.64	PASS	AC=1;AF=0.756;AN=2;DP=6604;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,81:170:99:3029,0,4939:50,39,39,42
chr1	8418650	.	T	C	3286.56	PASS	AC=1;AF=0.756;AN=2;DP=6765;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,82:173:99:3035,0,5010:52,39,40,42
chr1	8419868	.	G	GCTCCTT	1557.54	PASS	AC=1;AF=0.5;AN=2;DP=164;FS=0;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:1068,0,2254:22,12,21,10
chr1	8421092	.	C	T	770.12	PASS	AC=1;AF=0.633;AN=2;DP=4014;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,66:127:99:1469,0,1505:36,25,38,28
chr1	8421203	.	T	C	1300.81	PASS	AC=1;AF=0.732;AN=2;DP=5518;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,61:128:99:1653,0,1632:32,35,28,33
chr1	8422676	.	T	C	1765.52	PASS	AC=1;AF=0.732;AN=2;DP=6384;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,66:158:99:1567,0,2288:55,37,38,28
chr1	8526142	.	G	A	3024.9	PASS	AC=2;AF=0.689;AN=2;DP=4442;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3063,307,0:0,0,51,52
chr1	8557320	.	C	G	509.76	PASS	AC=2;AF=0.686;AN=2;DP=452;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:622,48,0:0,0,14,2
chr1	8557691	.	A	C	1100.85	PASS	AC=2;AF=0.689;AN=2;DP=1200;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1284,108,0:0,0,8,28
chr1	8601439	.	G	A	390.14	PASS	AC=1;AF=0.5;AN=2;DP=112;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:763,0,857:20,17,13,17
chr1	8877520	.	AT	ATTT,ATT,A	833	PASS	AC=1,1,0;AF=0.291,0.395,0.023;AN=2;DP=3598;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:42:99:3,1,22,16
chr1	8926285	.	A	AG	908.96	PASS	AC=1;AF=0.683;AN=2;DP=1922;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,28:73:99:721,0,1319:31,14,22,6
chr1	8926654	.	C	A	635.11	PASS	AC=1;AF=0.5;AN=2;DP=93;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,36:52:99:968,0,385:4,12,15,21
chr1	8930369	.	T	C	1482.85	PASS	AC=1;AF=0.854;AN=2;DP=2070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:764,0,542:16,6,19,6
chr1	8930385	.	G	A	1853.1	PASS	AC=1;AF=0.854;AN=2;DP=2569;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:880,0,783:20,9,23,10
chr1	8935149	.	A	G	582.26	PASS	AC=2;AF=0.857;AN=2;DP=745;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:580,48,0:0,0,2,14
chr1	9005737	.	GGGA	G	202.69	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.633;QD=20.27;ReadPosRankSum=0;SOR=1.085;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:240,0,183:4,0,6,0
chr1	9005754	.	G	A	330.88	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.909;QD=23.63;ReadPosRankSum=-1.202;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:359,0,141:4,0,9,1
chr1	9005857	.	A	G	782.19	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.828;QD=11.5;ReadPosRankSum=-0.754;SOR=0.582;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:810,0,822:22,12,21,13
chr1	9005975	.	G	A	1478.48	PASS	AC=1;AF=0.5;AN=2;DP=118;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.005;QD=12.53;ReadPosRankSum=1.847;SOR=0.687;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,67:118:99:1507,0,1145:26,25,33,34
chr1	9006104	.	T	TC	382.38	PASS	AC=1;AF=0.63;AN=2;DP=487;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:323,0,315:0,10,0,10
chr1	9009214	.	C	T	613.36	PASS	AC=1;AF=0.63;AN=2;DP=615;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:96:96,0,323:9,3,2,3
chr1	9009236	.	CCTGGCCT	C	427.58	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=0.962;MQ=60;MQRankSum=0.19;QD=16.45;ReadPosRankSum=2.747;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:465,0,478:9,4,9,3
chr1	9009283	.	A	G	850.8	PASS	AC=1;AF=0.5;AN=2;DP=109;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:452,0,530:14,5,13,6
chr1	9009352	.	A	T	1507.64	PASS	AC=1;AF=0.5;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,41:87:99:1029,0,1200:30,16,23,18
chr1	9009406	.	C	T	2837.38	PASS	AC=1;AF=0.625;AN=2;DP=3656;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,65:122:99:1661,0,1341:30,27,38,27
chr1	9009444	.	A	C	2520.64	PASS	AC=2;AF=0.676;AN=2;DP=4318;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:3925,389,0:0,0,68,62
chr1	9009470	.	G	C	1956.67	PASS	AC=1;AF=0.5;AN=2;DP=1239;MQ=60;set=variant6-variant18-variant21-variant23-variant30-variant32-variant33-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,50:122:99:1113,0,1849:37,35,25,25
chr1	9011537	.	G	A	1764.97	PASS	AC=1;AF=0.625;AN=2;DP=3962;MQ=60;set=variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant30-variant32-variant33-variant34-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:67,64:131:99:1569,0,1540:33,34,26,38
chr1	9011586	.	T	G	1417.19	PASS	AC=2;AF=0.797;AN=2;DP=4896;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3329,311,0:0,0,39,65
chr1	9011627	.	G	A	1604.68	PASS	AC=1;AF=0.5;AN=2;DP=780;MQ=60;set=variant6-variant23-variant32-variant33-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,40:81:99:1021,0,1141:17,24,15,25
chr1	9011722	.	G	T	441.05	PASS	AC=2;AF=0.775;AN=2;DP=1559;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:89:869,89,0:0,0,11,19
chr1	9034598	.	A	G	1285.85	PASS	AC=1;AF=0.597;AN=2;DP=2637;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,49:77:99:1236,0,697:15,13,25,24
chr1	9034815	.	C	CAGA	1845.29	PASS	AC=1;AF=0.691;AN=2;DP=3428;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,50:111:99:1948,0,2715:32,29,23,27
chr1	9063238	.	G	A	155.91	PASS	AC=1;AF=0.588;AN=2;DP=181;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant12-variant13-variant14-variant18-variant20-variant21-variant25-variant26-variant27-variant29-variant30-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,153:3,1,2,0
chr1	9063602	.	G	C	848.38	PASS	AC=1;AF=0.667;AN=2;DP=1883;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:413,0,664:3,17,5,11
chr1	9064609	.	AG	A	134.82	PASS	AC=1;AF=0.529;AN=2;DP=401;MQ=60;set=variant3-variant4-variant5-variant8-variant15-variant17-variant18-variant22-variant25-variant28-variant29-variant30-variant31-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:341,0,330:10,2,8,4
chr1	9070485	.	T	A	71.28	PASS	AC=2;AF=0.778;AN=2;DP=92;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant11-variant16-variant18-variant22-variant23-variant24-variant27-variant33-variant35-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:72,6,0:0,0,0,2
chr1	9073801	.	C	T	1376.71	PASS	AC=1;AF=0.611;AN=2;DP=2033;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,21:55:99:520,0,971:9,25,6,15
chr1	9074728	.	C	T	1399.84	PASS	AC=1;AF=0.5;AN=2;DP=143;FS=1.349;FractionInformativeReads=1;MQ=60;MQRankSum=0.043;QD=9.79;ReadPosRankSum=-0.757;SOR=0.863;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:84,59:143:99:1428,0,2057:45,39,34,25
chr1	9074932	.	G	A	566.04	PASS	AC=1;AF=0.615;AN=2;DP=998;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:313,0,591:5,14,2,8
chr1	9079154	.	C	T	140.95	PASS	AC=1;AF=0.675;AN=2;DP=329;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant11-variant12-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant33-variant35-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:476,0,215:5,1,13,1
chr1	9084924	.	T	C	552.78	PASS	AC=2;AF=0.841;AN=2;DP=3309;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2294,201,0:0,0,47,20
chr1	9095202	.	C	T	1848.88	PASS	AC=2;AF=0.805;AN=2;DP=4529;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3304,333,0:0,0,63,49
chr1	9098122	.	G	A	275.68	PASS	AC=1;AF=0.5;AN=2;DP=72;FractionInformativeReads=1;MQ=60;set=variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:320,0,524:3,13,1,9
chr1	9099727	.	A	G	3845.14	PASS	AC=1;AF=0.5;AN=2;DP=1835;MQ=60;set=variant3-variant29-variant30-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:156,150:306:99:3664,0,3480:69,87,72,78
chr1	9101155	.	T	G	1672.53	PASS	AC=1;AF=0.563;AN=2;DP=1019;MQ=60;set=variant7-variant12-variant16-variant19-variant21-variant24-variant25-variant27-variant28-variant32-variant33-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,30:80:99:664,0,1233:24,26,15,15
chr1	9160870	.	T	TGAGCCCAGGAGTTC	600.24	PASS	AC=1;AF=0.686;AN=2;DP=1123;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:309,0,2058:5,11,2,6
chr1	9161321	.	G	A	351.6	PASS	AC=1;AF=0.556;AN=2;DP=216;FractionInformativeReads=1;set=variant8-variant13-variant25-variant29-variant30-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:443,0,524:14,3,13,3
chr1	9162469	.	CAA	CA,C,CAAA,CAAAA	139.2	PASS	AC=1,0,0,0;AF=0.367,0.067,0.033,0.033;AN=2;DP=922;set=filterInvariant-filterInvariant4-filterInvariant8-variant20-variant21-variant25-variant29-filterInvariant30-variant33-variant36-variant37-variant38-filterInvariant40-variant41-variant42	GT:DP:GQ:SB	0/1:45:99:12,14,16,3
chr1	9164366	.	C	T	1650.85	PASS	AC=1;AF=0.5;AN=2;DP=357;FractionInformativeReads=1;MQ=60;set=variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:72,33:105:99:764,0,1976:34,38,18,15
chr1	9165868	.	A	G	948.56	PASS	AC=2;AF=0.989;AN=2;DP=926;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:903,75,0:0,0,5,20
chr1	9294808	.	C	T	50.85	PASS	AC=2;AF=0.667;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;ReadPosRankSum=0.727;set=variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:87,6,0:0,0,2,0
chr1	9323457	.	G	C	153.08	PASS	AC=1;AF=0.5;AN=2;DP=212;MQ=60;set=variant2-variant13-variant28-variant29-variant30-variant33-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:277,0,508:12,1,8,2
chr1	9324571	.	T	C	3002.29	PASS	AC=1;AF=0.679;AN=2;DP=10149;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:181,173:354:99:4796,0,4816:87,94,80,93
chr1	9324670	.	A	G	2057.15	PASS	AC=1;AF=0.679;AN=2;DP=7099;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,118:275:99:3069,0,3991:73,84,49,69
chr1	9325265	.	C	T	549.48	PASS	AC=1;AF=0.594;AN=2;DP=877;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant14-variant25-variant27-variant28-variant31-variant32-variant33-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,26:61:99:566,0,876:20,15,15,11
chr1	9325676	.	C	T	307.78	PASS	AC=1;AF=0.6;AN=2;DP=704;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:321,0,582:6,13,2,9
chr1	9325703	.	C	CT	452.02	PASS	AC=2;AF=0.824;AN=2;DP=824;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:490,48,0:0,0,4,12
chr1	9326435	.	T	C	1196.49	PASS	AC=1;AF=0.5;AN=2;DP=461;MQ=60;set=variant33-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,58:120:99:1595,0,1693:23,39,26,32
chr1	9326887	.	CTT	C,CT	218.26	PASS	AC=2,0;AF=0.721,0.256;AN=2;DP=625;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:11:33:0,0,4,7
chr1	9327387	.	T	G	1580.96	PASS	AC=2;AF=0.816;AN=2;DP=1999;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1285,114,0:0,0,19,19
chr1	9327413	.	T	G	557.88	PASS	AC=1;AF=0.6;AN=2;DP=896;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant14-variant25-variant28-variant31-variant32-variant33-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,18:49:99:432,0,897:19,12,11,7
chr1	9327645	.	G	A	1219.78	PASS	AC=1;AF=0.5;AN=2;DP=124;FS=0.673;FractionInformativeReads=1;MQ=60;MQRankSum=0.441;QD=9.84;ReadPosRankSum=-2.779;SOR=0.588;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,54:124:99:1248,0,1875:37,33,27,27
chr1	9327949	.	A	C	1975.96	PASS	AC=1;AF=0.661;AN=2;DP=4164;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,61:128:99:1522,0,1709:25,42,21,40
chr1	9328495	.	C	T	548.8	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=2.259;FractionInformativeReads=1;MQ=60;MQRankSum=0.296;QD=9.98;ReadPosRankSum=0.769;SOR=0.434;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,25:55:99:577,0,854:18,12,13,12
chr1	9328808	.	C	T	995.62	PASS	AC=1;AF=0.567;AN=2;DP=917;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant14-variant25-variant28-variant31-variant32-variant33-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,27:63:99:660,0,937:17,19,11,16
chr1	9329105	.	TA	T	353.01	PASS	AC=1;AF=0.567;AN=2;DP=509;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant14-variant25-variant28-variant31-variant32-variant33-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:314,0,283:4,3,5,4
chr1	9329107	.	A	T	362.06	PASS	AC=1;AF=0.567;AN=2;DP=507;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant14-variant25-variant28-variant31-variant32-variant33-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:314,0,283:5,3,5,4
chr1	9329176	.	G	A	920.98	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.234;QD=14.17;ReadPosRankSum=1.051;SOR=0.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,39:65:99:949,0,721:17,9,26,13
chr1	9331006	.	C	CT,CTTTTTTTTTTTTTTT,CTTTTTTTTTTT,CTTTTTTTTTTTTT	66.2	PASS	AC=1,0,0,0;AF=0.533,0.033,0.067,0.033;AN=2;DP=255;set=variant-variant3-variant4-variant6-variant9-variant10-variant11-variant14-variant25-variant31-variant32-variant33-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:8:30:1,1,2,4
chr1	9331244	.	T	C	556.2	PASS	AC=2;AF=0.679;AN=2;DP=1597;FractionInformativeReads=1;set=variant-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1757,177,0:0,0,33,26
chr1	9331277	.	G	T	1234.46	PASS	AC=1;AF=0.556;AN=2;DP=1399;MQ=60;set=variant3-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant26-variant27-variant33-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,27:67:99:669,0,925:21,19,12,15
chr1	9331331	.	A	T	1349.35	PASS	AC=1;AF=0.559;AN=2;DP=1182;MQ=60;set=variant3-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant26-variant27-variant33-variant35-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,23:61:99:596,0,892:19,19,8,15
chr1	9353015	.	CGCCGGG	C	1609.09	PASS	AC=2;AF=0.989;AN=2;DP=1614;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1701,118,0:0,0,19,20
chr1	9411667	.	A	G	599.75	PASS	AC=1;AF=0.869;AN=2;DP=831;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:228,0,239:2,5,2,4
chr1	9416852	.	A	G	363.6	PASS	AC=1;AF=0.575;AN=2;DP=656;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant8-variant10-variant11-variant17-variant18-variant21-variant22-variant25-variant30-variant33-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:382,0,610:6,13,5,11
chr1	9427842	.	A	G	2311.36	PASS	AC=1;AF=0.589;AN=2;DP=4592;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,108:199:99:2661,0,2333:42,49,51,57
chr1	9427869	.	G	A	2144.33	PASS	AC=2;AF=0.888;AN=2;DP=5770;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:5816,536,0:0,0,78,101
chr1	9428685	.	T	G	1392.61	PASS	AC=2;AF=0.881;AN=2;DP=2029;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1406,126,0:0,0,14,28
chr1	9428769	.	G	A	732.91	PASS	AC=2;AF=1;AN=2;DP=1458;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:86:904,86,0:0,0,16,13
chr1	9429264	.	GT	GTT,G	7259.04	PASS	AC=1,0;AF=0.568,0.023;AN=2;DP=5308;MQ=60;set=variant-variant4-variant8-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant26-variant27-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:200:99:44,54,49,53
chr1	9627521	.	A	G	1980.43	PASS	AC=1;AF=0.536;AN=2;DP=1613;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant9-variant11-variant13-variant19-variant20-variant21-variant28-variant30-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,59:133:99:1445,0,1805:32,42,29,30
chr1	9642329	.	C	T	952.35	PASS	AC=1;AF=0.542;AN=2;DP=1131;MQ=60;set=variant-variant2-variant9-variant13-variant19-variant21-variant28-variant30-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,42:92:99:954,0,1321:28,22,24,18
chr1	9655795	.	G	A	193.16	PASS	AC=1;AF=0.536;AN=2;DP=257;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-filterInvariant9-variant13-variant19-variant21-variant22-variant28-variant30-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:410,0,445:12,2,12,2
chr1	9658465	.	T	G	497.31	PASS	AC=1;AF=0.849;AN=2;DP=3709;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,39:80:99:1076,0,1133:30,11,25,14
chr1	9658707	.	G	A	839.09	PASS	AC=1;AF=0.837;AN=2;DP=2728;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,32:67:99:875,0,897:11,24,9,23
chr1	9661061	.	A	G	882.05	PASS	AC=1;AF=0.849;AN=2;DP=2096;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,30:47:99:820,0,465:14,3,22,8
chr1	9664821	.	T	C	2633.1	PASS	AC=1;AF=0.542;AN=2;DP=933;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant11-variant13-variant19-variant20-variant21-variant30-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,60:99:99:2382,0,2019:20,19,30,30
chr1	9664822	.	T	C	2633.1	PASS	AC=1;AF=0.542;AN=2;DP=934;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant11-variant13-variant19-variant20-variant21-variant30-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,59:97:99:2382,0,2019:20,18,29,30
chr1	9670483	.	T	A	950.65	PASS	AC=1;AF=0.872;AN=2;DP=4712;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,56:122:99:1388,0,1613:39,27,34,22
chr1	9670834	.	C	T	695.36	PASS	AC=1;AF=0.837;AN=2;DP=3046;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:1126,0,787:13,19,14,29
chr1	9671257	.	CTT	CT,C	149.22	PASS	AC=1,0;AF=0.841,0.024;AN=2;DP=1347;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:21:99:2,6,4,9
chr1	9673779	.	C	A	766.57	PASS	AC=1;AF=0.86;AN=2;DP=4643;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,52:107:99:1304,0,1573:23,32,25,27
chr1	9711642	.	A	G	311.07	PASS	AC=1;AF=0.569;AN=2;DP=787;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant17-variant19-variant21-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:374,0,206:6,6,9,7
chr1	9711674	.	A	G	569.9	PASS	AC=1;AF=0.569;AN=2;DP=1037;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant17-variant19-variant21-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:512,0,324:9,7,12,10
chr1	9711737	.	T	C	805.7	PASS	AC=1;AF=0.569;AN=2;DP=1173;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant17-variant19-variant21-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,24:43:99:661,0,419:8,11,12,12
chr1	9711760	.	G	C	806.81	PASS	AC=1;AF=0.569;AN=2;DP=1057;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant17-variant19-variant21-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,26:44:99:615,0,463:8,10,14,12
chr1	9713386	.	C	T	511.73	PASS	AC=1;AF=0.567;AN=2;DP=1285;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant17-variant19-variant21-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:266,0,378:5,8,6,5
chr1	9713500	.	G	A	379.5	PASS	AC=1;AF=0.565;AN=2;DP=907;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant17-variant19-variant20-variant21-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:324,0,455:9,4,6,5
chr1	9714247	.	A	G	4967.2	PASS	AC=1;AF=0.563;AN=2;DP=2935;MQ=60;set=variant2-variant5-variant6-variant12-variant17-variant21-variant27-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,97:192:99:2633,0,2525:54,41,46,51
chr1	9714538	.	G	GGA	952.28	PASS	AC=1;AF=0.581;AN=2;DP=2250;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant17-variant19-variant20-variant21-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,37:58:99:1490,0,3886:9,12,11,26
chr1	9714539	.	T	G	961.31	PASS	AC=1;AF=0.581;AN=2;DP=2118;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant17-variant19-variant20-variant21-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,36:57:99:1491,0,3886:9,12,9,27
chr1	9714541	.	C	CCA	909.86	PASS	AC=1;AF=0.581;AN=2;DP=2050;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant17-variant19-variant20-variant21-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,34:55:99:1487,0,3923:9,12,8,26
chr1	9714543	.	A	ACCCC	904.54	PASS	AC=1;AF=0.581;AN=2;DP=2003;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant17-variant19-variant20-variant21-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,33:55:99:1403,0,3929:10,12,8,25
chr1	9714544	.	A	AG	907.44	PASS	AC=1;AF=0.581;AN=2;DP=1963;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant17-variant19-variant20-variant21-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,33:54:99:1361,0,3932:10,11,8,25
chr1	9770690	.	CAG	CAGAG,C	158.13	PASS	AC=1,0;AF=0.4,0.1;AN=2;DP=656;MQ=60;set=variant2-filterInvariant8-variant9-filterInvariant11-variant13-filterInvariant18-variant19-filterInvariant22-variant26-variant27-variant28-filterInvariant29-filterInvariant30-variant33-variant34-variant35-variant36-variant37-variant41-variant44	GT:DP:GQ:SB	0/1:30:99:3,16,2,9
chr1	9778707	.	G	T	738.12	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=1.3;FractionInformativeReads=1;MQ=60;MQRankSum=-0.19;QD=12.51;ReadPosRankSum=1.255;SOR=0.936;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:766,0,1025:26,6,23,4
chr1	9779871	.	T	C	478.37	PASS	AC=1;AF=0.5;AN=2;DP=611;MQ=60;set=variant7-variant9-variant13-variant18-variant19-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,29:44:99:1044,0,515:14,1,27,2
chr1	9782766	.	C	T	682.37	PASS	AC=1;AF=0.5;AN=2;DP=487;FractionInformativeReads=1;MQ=60;set=variant9-variant19-variant27-variant28-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:1032,0,1043:15,24,15,24
chr1	9784423	.	C	T	2555.37	PASS	AC=1;AF=0.5;AN=2;DP=1462;FractionInformativeReads=1;set=variant9-variant19-variant27-variant28-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,84:160:99:2151,0,1914:39,37,45,39
chr1	9787508	.	T	C	2807.99	PASS	AC=1;AF=0.943;AN=2;DP=5790;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:77,69:146:99:1666,0,1914:37,40,29,40
chr1	9789150	.	C	T	1600.73	PASS	AC=1;AF=0.5;AN=2;DP=220;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,45:104:99:1211,0,1678:27,32,15,30
chr1	9789891	.	T	C	690.26	PASS	AC=1;AF=0.5;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant9-variant27-variant28-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:963,0,791:11,19,16,17
chr1	9790252	.	G	C	2758.04	PASS	AC=1;AF=0.5;AN=2;DP=173;FS=5.713;FractionInformativeReads=1;MQ=60;MQRankSum=1.347;QD=15.94;ReadPosRankSum=-0.34;SOR=0.395;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,111:173:99:2786,0,1602:37,25,56,55
chr1	9790278	.	G	A	2454.31	PASS	AC=1;AF=0.5;AN=2;DP=173;FS=5.586;FractionInformativeReads=1;MQ=60;MQRankSum=1.332;QD=14.19;ReadPosRankSum=-0.291;SOR=0.404;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,105:173:99:2483,0,1832:41,27,54,51
chr1	9791486	.	G	A	1101.76	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.868;QD=13.95;ReadPosRankSum=-0.721;SOR=0.592;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,41:79:99:1130,0,940:12,26,14,27
chr1	9792105	.	G	GA	162.61	PASS	AC=2;AF=0.989;AN=2;DP=870;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:827,87,0:0,0,4,25
chr1	9794305	.	C	T	712.58	PASS	AC=1;AF=0.5;AN=2;DP=261;FractionInformativeReads=1;MQ=60;set=variant9-variant27-variant28-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:888,0,1089:8,27,6,23
chr1	9794982	.	C	T	894.68	PASS	AC=1;AF=0.5;AN=2;DP=303;FractionInformativeReads=1;MQ=60;set=variant9-variant27-variant28-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:847,0,656:15,7,20,10
chr1	9795250	.	G	A	758.3	PASS	AC=1;AF=0.5;AN=2;DP=283;FractionInformativeReads=1;MQ=60;set=variant9-variant27-variant28-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:724,0,1454:12,15,7,14
chr1	9795269	.	G	A	409.44	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=1.45;FractionInformativeReads=1;MQ=60;MQRankSum=0.43;QD=12.41;ReadPosRankSum=-0.954;SOR=0.409;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:438,0,1372:7,14,5,7
chr1	9795719	.	C	T	58.61	PASS	AC=1;AF=0.5;AN=2;DP=114;FractionInformativeReads=1;MQ=60;set=variant9-variant27-variant28-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:331,0,415:5,8,1,9
chr1	9804248	.	G	A	607.45	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=2.418;FractionInformativeReads=1;MQ=60;MQRankSum=1.028;QD=11.91;ReadPosRankSum=-1.028;SOR=1.172;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:636,0,714:13,14,9,15
chr1	9811541	.	A	G	703	PASS	AC=1;AF=0.5;AN=2;DP=379;MQ=60;set=variant9-variant27-variant28-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,38:59:99:954,0,651:15,6,23,15
chr1	9816620	.	T	C	3377.27	PASS	AC=1;AF=0.955;AN=2;DP=4415;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,33:80:99:733,0,1226:22,25,19,14
chr1	9816848	.	C	CT	90.71	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=0.833;MQ=60;MQRankSum=0.177;QD=5.04;ReadPosRankSum=-1.709;SOR=0.399;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:128,0,225:0,9,0,6
chr1	9883878	.	T	C	548.53	PASS	AC=2;AF=1;AN=2;DP=1034;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:543,54,0:0,0,9,9
chr1	9883960	.	A	G	138.55	PASS	AC=1;AF=0.5;AN=2;DP=241;MQ=60;set=variant9-variant27-variant28-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:319,0,370:9,10,7,8
chr1	9884194	.	C	G	69.2	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.495;QD=4.94;ReadPosRankSum=-0.495;SOR=1.112;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:97:97,0,285:6,4,3,1
chr1	9884399	.	T	G	1363.62	PASS	AC=1;AF=0.5;AN=2;DP=713;MQ=60;set=variant9-variant27-variant28-variant33-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,43:82:99:1110,0,1010:25,14,27,16
chr1	9908269	.	C	T	2203.24	PASS	AC=1;AF=0.563;AN=2;DP=2283;MQ=60;set=variant4-variant9-variant10-variant12-variant13-variant18-variant23-variant24-variant25-variant28-variant35-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,61:128:99:1521,0,1630:40,27,35,26
chr1	9908515	.	A	G	1748.93	PASS	AC=2;AF=1;AN=2;DP=2493;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1995,183,0:0,0,28,33
chr1	9908680	.	C	T	903.43	PASS	AC=1;AF=0.563;AN=2;DP=647;MQ=60;set=variant4-variant9-variant10-variant12-variant13-variant18-variant23-variant24-variant25-variant28-variant35-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:384,0,732:13,9,6,9
chr1	9909506	.	G	A	619.13	PASS	AC=1;AF=0.567;AN=2;DP=585;MQ=60;set=variant4-variant9-filterInvariant10-variant12-variant13-variant18-variant23-variant24-variant25-variant28-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:487,0,414:9,9,9,10
chr1	9910357	.	A	T	2297.48	PASS	AC=1;AF=0.611;AN=2;DP=771;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant10-variant12-variant13-variant18-variant19-variant20-variant23-variant24-variant25-variant28-variant35-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:824,0,949:10,8,11,9
chr1	9910358	.	T	C	2297.48	PASS	AC=1;AF=0.611;AN=2;DP=775;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant10-variant12-variant13-variant18-variant19-variant20-variant23-variant24-variant25-variant28-variant35-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:824,0,949:11,8,12,10
chr1	9970471	.	G	A	274.33	PASS	AC=1;AF=0.533;AN=2;DP=221;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant10-variant12-variant14-variant18-variant23-variant24-variant25-variant35-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:153,0,154:2,4,4,2
chr1	9989150	.	C	T	1794.28	PASS	AC=1;AF=0.5;AN=2;DP=929;MQ=60;set=variant-variant5-variant6-variant15-variant21-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,59:127:99:1882,0,2247:54,14,48,11
chr1	9992159	.	TGGGGG	T,TG	145.84	PASS	AC=0,2;AF=0.288,0.404;AN=2;DP=283;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant18-variant21-variant24-variant28-variant29-variant31-variant32-variant33-variant34-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	2/2:6:8:1,0,0,5
chr1	10001235	.	TTTCG	T	3170.84	PASS	AC=2;AF=0.857;AN=2;DP=3331;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2203,154,0:0,0,16,35
chr1	10003320	.	G	A	1446.75	PASS	AC=2;AF=0.884;AN=2;DP=2154;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,36:37:99:1072,100,0:1,0,20,16
chr1	10027540	.	G	A	611.73	PASS	AC=2;AF=0.884;AN=2;DP=803;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:673,57,0:0,0,6,13
chr1	10057233	.	A	C	324.49	PASS	AC=1;AF=0.5;AN=2;DP=1107;set=variant2-filterInvariant3-variant4-variant5-variant8-filterInvariant9-variant10-variant12-variant17-variant19-variant21-variant23-filterInvariant26-variant28-filterInvariant29-filterInvariant32-variant34-variant35-filterInvariant36-variant38-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:43,9:52:99:117,0,1575:14,29,9,0
chr1	10057240	.	T	C	299.96	PASS	AC=1;AF=0.5;AN=2;DP=1305;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant15-variant19-variant21-variant26-variant28-variant30-filterInvariant31-variant32-variant35-variant38-variant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,7:65:61:61,0,2044:30,28,7,0
chr1	10204868	.	A	T	737.45	PASS	AC=1;AF=0.5;AN=2;DP=90;FractionInformativeReads=1;MQ=60;set=variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,21:46:99:508,0,594:14,11,15,6
chr1	10241135	.	TAA	TA,T	2290.82	PASS	AC=1,0;AF=0.535,0.012;AN=2;DP=10375;MQ=60;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-filterInvariant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant18-variant19-variant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-filterInvariant33-variant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:228:93:92,107,12,17
chr1	10335315	.	G	A	1209.71	PASS	AC=2;AF=0.977;AN=2;DP=1349;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:670,57,0:0,0,15,4
chr1	10357206	.	AT	A,ATTT,ATT	245.14	PASS	AC=1,0,0;AF=0.452,0.024,0.024;AN=2;DP=2586;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-variant12-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:36:99:10,14,6,6
chr1	10438006	.	A	T	42.21	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant21-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:94:94,0,154:4,1,3,0
chr1	10468005	.	CA	C,CAA	167.45	PASS	AC=1,0;AF=0.414,0.086;AN=2;DP=2864;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant6-variant8-filterInvariant9-filterInvariant10-variant11-variant12-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant18-variant19-filterInvariant20-filterInvariant24-variant25-filterInvariant26-variant27-variant28-filterInvariant32-variant33-filterInvariant34-filterInvariant38-variant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:106:99:49,32,15,10
chr1	10478830	.	CA	C,CAA	82.92	PASS	AC=1,0;AF=0.3,0.2;AN=2;DP=1035;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:27:99:14,4,9,0
chr1	10502307	.	AT	A	308.59	PASS	AC=2;AF=0.966;AN=2;DP=1116;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:605,63,0:0,0,15,6
chr1	10502710	.	A	G	5629.8	PASS	AC=2;AF=0.966;AN=2;DP=6909;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4243,428,0:0,0,73,70
chr1	10509703	.	C	T	1876.54	PASS	AC=2;AF=0.966;AN=2;DP=1331;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1182,84,0:0,0,27,1
chr1	10511330	.	AT	A,ATT	388.17	PASS	AC=2,0;AF=0.672,0.017;AN=2;DP=467;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:18:53:0,0,13,5
chr1	10511544	.	C	T	3636.33	PASS	AC=2;AF=0.643;AN=2;DP=3262;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3625,338,0:0,0,57,56
chr1	10511589	.	T	C	3717.06	PASS	AC=2;AF=0.966;AN=2;DP=4733;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,111:112:99:3739,291,0:0,1,63,48
chr1	10512056	.	T	C	7758.98	PASS	AC=2;AF=0.966;AN=2;DP=8821;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:6299,561,0:0,0,117,70
chr1	10517944	.	CTG	C	799.39	PASS	AC=2;AF=0.966;AN=2;DP=1599;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1071,78,0:0,0,6,20
chr1	10518591	.	A	ATT,ATTT,AT	266.84	PASS	AC=0,0,2;AF=0.375,0.25,0.375;AN=2;DP=99;FS=0;MQ=60;MQRankSum=0.751;ReadPosRankSum=0.751;set=variant2-variant8-variant9-variant10-variant16-variant17-variant19-variant26-variant27-variant31-variant33-variant34-variant36-variant39-variant41-variant44	GT:DP:GQ:SB	3/3:6:18:0,0,3,3
chr1	10518596	.	C	T	275.94	PASS	AC=2;AF=1;AN=2;DP=122;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.747;ReadPosRankSum=-0.747;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant31-variant33-variant34-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:227,18,0:0,0,3,3
chr1	10519090	.	C	T	518.05	PASS	AC=2;AF=0.965;AN=2;DP=373;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:444,33,0:0,0,9,2
chr1	10519786	.	TA	T,TAA	77.32	PASS	AC=1,0;AF=0.435,0.065;AN=2;DP=2467;set=filterInvariant5-filterInvariant9-filterInvariant10-filterInvariant12-filterInvariant16-filterInvariant17-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant27-filterInvariant29-filterInvariant31-filterInvariant33-filterInvariant34-filterInvariant36-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:79:79:15,50,3,11
chr1	10519787	.	A	T	1123.87	PASS	AC=1;AF=0.5;AN=2;DP=3320;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-filterInvariant12-variant13-variant14-variant15-variant16-variant19-filterInvariant21-variant23-variant24-variant25-variant26-variant27-variant29-filterInvariant30-variant31-variant32-variant34-variant35-variant37-variant39-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,22:94:99:201,0,1921:18,54,5,17
chr1	10529194	.	T	C	2681.74	PASS	AC=2;AF=0.677;AN=2;DP=2592;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2382,210,0:0,0,49,21
chr1	10555257	.	C	T	1584.21	PASS	AC=2;AF=0.744;AN=2;DP=2343;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2195,210,0:0,0,45,25
chr1	10596388	.	A	G	1671.53	PASS	AC=2;AF=0.989;AN=2;DP=3179;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2916,278,0:0,0,30,63
chr1	10689942	.	G	T	1556	PASS	AC=2;AF=0.583;AN=2;DP=2724;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant9-variant12-variant13-variant16-variant18-variant21-variant22-variant27-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,177:178:99:5278,526,0:1,0,77,100
chr1	10713765	.	T	C	4128.14	PASS	AC=1;AF=0.643;AN=2;DP=10450;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:138,166:304:99:4160,0,3246:68,70,86,80
chr1	10714436	.	C	T	422.24	PASS	AC=1;AF=0.595;AN=2;DP=1147;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant12-variant14-variant15-variant16-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:1006,0,1292:27,14,25,8
chr1	10719645	.	A	G	585.92	PASS	AC=1;AF=0.647;AN=2;DP=1670;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,43:71:99:1313,0,891:25,3,33,10
chr1	10856513	.	TG	T	545.81	PASS	AC=2;AF=0.845;AN=2;DP=2583;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:8,52:60:95:1328,95,0:7,1,29,23
chr1	10856517	.	G	A	619.42	PASS	AC=2;AF=0.845;AN=2;DP=2578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2690,192,0:0,0,39,24
chr1	11029942	.	G	A	323.58	PASS	AC=1;AF=0.5;AN=2;DP=131;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant19-variant29-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,4:19:88:88,0,396:10,5,2,2
chr1	11030014	.	G	A	707.96	PASS	AC=1;AF=0.5;AN=2;DP=234;MQ=60;set=variant3-variant11-variant19-variant29-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,9:36:99:208,0,797:16,11,5,4
chr1	11036050	.	T	C	400.7	PASS	AC=1;AF=0.533;AN=2;DP=397;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant10-variant11-variant18-variant19-variant22-variant23-variant24-variant26-variant29-variant30-variant31-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:460,0,381:9,1,12,2
chr1	11042201	.	C	CAG,CG	504.4	PASS	AC=1,0;AF=0.5,0.028;AN=2;DP=647;MQ=60;set=variant-variant2-variant5-variant8-variant10-variant11-variant18-variant19-variant22-variant23-variant24-variant26-variant29-variant30-variant31-variant33-variant39-variant41	GT:DP:GQ:SB	0/1:42:99:5,12,8,17
chr1	11072579	.	T	C	917.48	PASS	AC=2;AF=0.942;AN=2;DP=696;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:526,48,0:0,0,11,5
chr1	11072885	.	C	T	381.29	PASS	AC=1;AF=0.826;AN=2;DP=888;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:333,0,296:3,7,5,5
chr1	11079077	.	A	G	267.07	PASS	AC=1;AF=0.826;AN=2;DP=808;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:257,0,346:3,9,3,8
chr1	11080723	.	T	TG	98.75	PASS	AC=2;AF=0.872;AN=2;DP=801;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:285,24,0:0,0,1,7
chr1	11082054	.	AG	A	103.61	PASS	AC=1;AF=0.872;AN=2;DP=346;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:132,0,212:6,0,4,0
chr1	11086097	.	A	AT	1336.83	PASS	AC=1;AF=0.826;AN=2;DP=2861;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:669,0,899:10,18,9,13
chr1	11086717	.	A	G	221.67	PASS	AC=2;AF=0.86;AN=2;DP=1546;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1251,120,0:0,0,24,16
chr1	11087524	.	G	A	2327.96	PASS	AC=2;AF=0.86;AN=2;DP=5991;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4481,420,0:0,0,62,78
chr1	11087835	.	T	C	276.2	PASS	AC=2;AF=0.872;AN=2;DP=556;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:399,33,0:0,0,3,8
chr1	11090387	.	ATGT	A	205.62	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=0.923;MQ=60;MQRankSum=-0.699;QD=7.91;ReadPosRankSum=1.27;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:243,0,850:6,11,2,5
chr1	11090897	.	A	G	993.1	PASS	AC=1;AF=0.5;AN=2;DP=273;FractionInformativeReads=1;MQ=60;set=variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,54:90:99:1460,0,922:14,22,23,31
chr1	11090916	.	C	A	846.21	PASS	AC=1;AF=0.826;AN=2;DP=3007;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,26:72:99:644,0,1285:17,29,9,17
chr1	11090995	.	C	T	294.58	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.136;QD=11.78;ReadPosRankSum=0.139;SOR=0.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:323,0,499:2,13,1,9
chr1	11094757	.	G	GA,GAA	377.46	PASS	AC=1,0;AF=0.737,0.013;AN=2;DP=721;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:17:20:2,2,13,0
chr1	11095039	.	C	T	80.93	PASS	AC=2;AF=0.872;AN=2;DP=943;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:830,78,0:0,0,13,13
chr1	11102939	.	C	T	1677.73	PASS	AC=1;AF=0.5;AN=2;DP=117;FS=5.864;FractionInformativeReads=1;MQ=60;MQRankSum=-1.738;QD=14.34;ReadPosRankSum=-1.065;SOR=1.242;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:53,64:117:99:1706,0,1196:28,25,41,23
chr1	11104676	.	G	A	331.62	PASS	AC=1;AF=0.802;AN=2;DP=639;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,5:19:99:160,0,319:9,5,4,1
chr1	11104712	.	G	A	576.02	PASS	AC=1;AF=0.802;AN=2;DP=1027;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:399,0,519:14,6,11,3
chr1	11104743	.	T	G	459.51	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=1.386;FractionInformativeReads=1;MQ=60;MQRankSum=-1.439;QD=12.09;ReadPosRankSum=0.147;SOR=0.46;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:488,0,577:16,5,12,5
chr1	11104845	.	T	C	1450.09	PASS	AC=2;AF=0.86;AN=2;DP=4900;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3410,331,0:0,0,61,50
chr1	11105066	.	G	A	1022.72	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.198;QD=12.03;ReadPosRankSum=-1.385;SOR=0.698;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,44:85:99:1051,0,1178:14,27,15,29
chr1	11105106	.	C	T	597.83	PASS	AC=1;AF=0.802;AN=2;DP=2689;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,37:67:99:1086,0,835:14,16,14,23
chr1	11105122	.	C	T	504.5	PASS	AC=2;AF=0.86;AN=2;DP=2563;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2450,186,0:0,0,27,33
chr1	11105385	.	C	G	1927.32	PASS	AC=1;AF=0.5;AN=2;DP=117;FS=3.461;FractionInformativeReads=1;MQ=60;MQRankSum=-1.23;QD=16.47;ReadPosRankSum=0.633;SOR=1.042;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,71:117:99:1956,0,1183:23,23,41,30
chr1	11106617	.	G	A	1776.37	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=2.209;FractionInformativeReads=1;MQ=60;MQRankSum=-0.522;QD=13.16;ReadPosRankSum=-3.78;SOR=0.929;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,77:135:99:1805,0,1387:30,28,44,33
chr1	11107439	.	G	T	72.1	PASS	AC=1;AF=0.81;AN=2;DP=740;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:219,0,231:0,6,1,6
chr1	11119899	.	T	C	4997.74	PASS	AC=2;AF=1;AN=2;DP=7102;FS=0;MQ=60;MQRankSum=-0.485;ReadPosRankSum=0.928;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,124:125:99:3615,365,0:0,1,57,67
chr1	11126517	.	C	T	104.96	PASS	AC=1;AF=0.803;AN=2;DP=378;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:231,0,179:5,1,6,4
chr1	11126569	.	C	A	215.23	PASS	AC=1;AF=0.774;AN=2;DP=845;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:284,0,329:6,5,7,4
chr1	11126941	.	C	T	323.54	PASS	AC=1;AF=0.774;AN=2;DP=1294;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:237,0,361:6,9,2,6
chr1	11128001	.	A	G	412.34	PASS	AC=1;AF=0.774;AN=2;DP=911;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,22:31:99:499,0,194:5,4,12,10
chr1	11128329	.	A	G	43.72	PASS	AC=1;AF=0.813;AN=2;DP=282;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:72:108,0,72:1,1,2,2
chr1	11128334	.	A	C	55.7	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.55;QD=7.96;ReadPosRankSum=-0.55;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:84:84,0,159:2,2,1,2
chr1	11128654	.	G	A	1127.29	PASS	AC=1;AF=0.762;AN=2;DP=2227;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:663,0,533:14,9,16,8
chr1	11129848	.	A	G	562.31	PASS	AC=1;AF=0.791;AN=2;DP=1662;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:521,0,522:7,14,7,13
chr1	11132217	.	G	A	629.98	PASS	AC=1;AF=0.774;AN=2;DP=2364;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,29:54:99:720,0,564:11,14,14,15
chr1	11133956	.	A	AAAG,AAG,AG,AAAAG,AAAAAG	822.77	PASS	AC=0,0,0,0,1;AF=0.448,0.207,0.034,0.052,0.069;AN=2;DP=1046;set=variant2-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/5:27:99:10,6,10,1
chr1	11134157	.	T	G	866.41	PASS	AC=1;AF=0.802;AN=2;DP=2169;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:835,0,705:16,7,9,15
chr1	11137778	.	C	T	493.49	PASS	AC=1;AF=0.774;AN=2;DP=1450;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:327,0,553:5,15,6,9
chr1	11140620	.	A	C	40.26	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=0.846;MQ=59.85;MQRankSum=-0.278;QD=3.1;ReadPosRankSum=-0.278;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:68:68,0,261:3,4,2,2
chr1	11141187	.	C	G	913.85	PASS	AC=1;AF=0.802;AN=2;DP=5023;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,48:109:99:1114,0,1503:33,28,25,23
chr1	11151779	.	A	G	158.43	PASS	AC=2;AF=0.829;AN=2;DP=494;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:336,27,0:0,0,1,8
chr1	11156045	.	CT	C	37.29	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=38;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:68:68,0,133:0,8,1,3
chr1	11167778	.	T	G	38.97	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.322;QD=4.87;ReadPosRankSum=0.322;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:67:67,0,159:2,3,1,2
chr1	11172997	.	T	C	739.85	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=3.468;FractionInformativeReads=1;MQ=60;MQRankSum=0.24;QD=11.93;ReadPosRankSum=-0.649;SOR=1.174;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,29:62:99:768,0,848:16,17,11,18
chr1	11174850	.	C	T	1109.91	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=2.33;FractionInformativeReads=1;MQ=60;MQRankSum=-1.471;QD=9.1;ReadPosRankSum=-2.132;SOR=0.915;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,50:122:99:1138,0,1691:38,34,29,21
chr1	11187893	.	T	C	1609.98	PASS	AC=1;AF=0.989;AN=2;DP=1868;MQ=60;MQRankSum=0.892;ReadPosRankSum=0.499;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,27:42:99:709,0,407:3,12,9,18
chr1	11205058	.	C	T	1414.83	PASS	AC=1;AF=0.762;AN=2;DP=5052;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,63:128:99:1506,0,1566:32,33,36,27
chr1	11288618	.	G	A	352.53	PASS	AC=1;AF=0.779;AN=2;DP=1653;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,34:61:99:1327,0,1386:15,12,19,15
chr1	11288633	.	G	C	463.19	PASS	AC=1;AF=0.779;AN=2;DP=1856;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,39:71:99:1484,0,1414:16,16,23,16
chr1	11288758	.	G	A	875.54	PASS	AC=1;AF=0.779;AN=2;DP=4391;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,60:109:99:1549,0,1225:29,20,38,22
chr1	11292666	.	T	A	152.9	PASS	AC=1;AF=0.776;AN=2;DP=367;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:95:154,0,95:1,3,1,4
chr1	11294474	.	T	A	252.98	PASS	AC=1;AF=0.779;AN=2;DP=865;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:215,0,302:1,8,0,6
chr1	11297762	.	T	C	445.51	PASS	AC=1;AF=0.779;AN=2;DP=2425;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:682,0,546:13,8,15,12
chr1	11298790	.	T	C	114.2	PASS	AC=1;AF=0.786;AN=2;DP=625;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:292,0,274:2,7,0,8
chr1	11301714	.	A	G	881.01	PASS	AC=1;AF=0.779;AN=2;DP=5802;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,69:130:99:1674,0,1493:33,28,39,30
chr1	11317320	.	C	T	278.98	PASS	AC=1;AF=0.762;AN=2;DP=1358;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:545,0,384:4,10,5,13
chr1	11318236	.	C	T	36.49	PASS	AC=2;AF=0.88;AN=2;DP=112;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant21-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:99,12,0:0,0,2,2
chr1	11318763	.	C	G	201.16	PASS	AC=1;AF=0.775;AN=2;DP=429;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:360,0,234:0,7,2,9
chr1	11319587	.	A	G	416.97	PASS	AC=1;AF=0.762;AN=2;DP=2096;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,35:54:99:905,0,546:6,13,14,21
chr1	11322565	.	C	G	740.98	PASS	AC=1;AF=0.774;AN=2;DP=2155;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,14:42:99:290,0,855:15,13,7,7
chr1	11322628	.	G	T	562.23	PASS	AC=1;AF=0.774;AN=2;DP=2173;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,13:43:99:251,0,900:15,15,5,8
chr1	11347155	.	C	CTGTT	589.02	PASS	AC=1;AF=0.619;AN=2;DP=1225;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant11-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,21:52:99:788,0,1853:15,16,12,9
chr1	11354893	.	C	T	3215.87	PASS	AC=1;AF=0.5;AN=2;DP=263;FS=3.376;FractionInformativeReads=1;MQ=60;MQRankSum=1.879;QD=12.23;ReadPosRankSum=0.241;SOR=0.823;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:135,128:263:99:3244,0,3443:66,69,69,59
chr1	11354919	.	G	A	3059.11	PASS	AC=1;AF=0.5;AN=2;DP=242;FS=8.041;FractionInformativeReads=1;MQ=60;MQRankSum=-1.521;QD=12.64;ReadPosRankSum=0.76;SOR=0.86;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:119,123:242:99:3087,0,3166:55,64,69,54
chr1	11561164	.	G	A	1442.04	PASS	AC=1;AF=0.545;AN=2;DP=997;MQ=60;set=variant3-variant7-variant8-variant24-variant25-variant28-variant31-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,44:90:99:1182,0,1273:27,19,26,18
chr1	11561593	.	G	A	5270.66	PASS	AC=1;AF=0.611;AN=2;DP=5850;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,76:165:99:2048,0,2328:49,40,36,40
chr1	11561937	.	C	T	2373.89	PASS	AC=1;AF=0.545;AN=2;DP=2030;MQ=60;set=variant3-variant7-variant8-variant24-variant25-variant28-variant31-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:110,66:176:99:1621,0,2867:52,58,31,35
chr1	11562913	.	C	T	2071.44	PASS	AC=1;AF=0.545;AN=2;DP=1381;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant24-variant25-variant28-variant31-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,51:111:99:1305,0,1397:26,34,23,28
chr1	11575375	.	T	A	1535.61	PASS	AC=1;AF=0.611;AN=2;DP=2490;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:756,0,1118:29,10,19,8
chr1	11575398	.	G	A	1214.72	PASS	AC=1;AF=0.545;AN=2;DP=1050;MQ=60;set=variant3-variant7-variant8-variant24-variant25-variant28-variant31-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,54:90:99:1426,0,951:25,11,34,20
chr1	11579470	.	G	A	3818.46	PASS	AC=1;AF=0.618;AN=2;DP=5083;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,78:145:99:1836,0,1711:40,27,44,34
chr1	11593640	.	A	G	887.34	PASS	AC=2;AF=0.942;AN=2;DP=1984;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:723,69,0:0,0,15,8
chr1	11593793	.	T	TGCACACACGCAC	2861.02	PASS	AC=2;AF=1;AN=2;DP=3932;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:3095,218,0:0,0,39,18
chr1	11594400	.	T	C	738.37	PASS	AC=1;AF=0.632;AN=2;DP=2259;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,23:60:99:542,0,891:22,15,15,8
chr1	11596455	.	C	T	1681.84	PASS	AC=1;AF=0.55;AN=2;DP=1189;MQ=60;set=variant3-variant7-variant8-variant24-variant25-variant28-variant31-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,75:144:99:1990,0,1756:44,25,45,30
chr1	11596762	.	C	T	1169.54	PASS	AC=1;AF=0.548;AN=2;DP=1942;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant12-variant16-variant17-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,30:75:99:675,0,1153:21,24,13,17
chr1	11596864	.	A	G	992.22	PASS	AC=1;AF=0.55;AN=2;DP=745;MQ=60;set=variant3-variant7-variant8-variant24-variant25-variant28-variant31-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,16:61:99:316,0,1066:24,21,10,6
chr1	11596912	.	T	C	758.82	PASS	AC=1;AF=0.55;AN=2;DP=666;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant24-variant25-variant28-variant31-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,17:61:99:310,0,1107:19,25,9,8
chr1	11708736	.	T	C	5505.73	PASS	AC=1;AF=0.833;AN=2;DP=7281;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,85:166:99:2266,0,1835:39,42,41,44
chr1	11709051	.	A	AG	651.78	PASS	AC=1;AF=0.778;AN=2;DP=1011;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:573,0,1016:13,4,7,8
chr1	11709052	.	C	G,CCCAG,CCCAGCCCAGCCCAG	862.77	PASS	AC=0,1,0;AF=0.273,0.625,0.023;AN=2;DP=1260;set=Intersection	GT:DP:GQ:SB	0/2:32:99:13,4,7,8
chr1	11710779	.	C	CGCG	416.96	PASS	AC=1;AF=0.563;AN=2;DP=704;MQ=60;set=variant2-variant8-variant9-variant12-variant13-variant17-variant21-variant25-variant26-variant27-variant30-variant32-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:322,0,700:7,10,3,6
chr1	11714368	.	T	G	1148.72	PASS	AC=2;AF=0.805;AN=2;DP=1743;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:897,84,0:0,0,7,21
chr1	11714793	.	A	G	422.99	PASS	AC=2;AF=0.817;AN=2;DP=1067;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1214,108,0:0,0,10,26
chr1	11714883	.	G	GGCGGGGC	107.74	PASS	AC=2;AF=0.882;AN=2;DP=116;FS=0;MQ=60;set=variant3-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant22-variant24-variant25-variant27-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,1,1
chr1	11721321	.	G	A	2328.04	PASS	AC=1;AF=0.5;AN=2;DP=458;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:132,109:241:99:2690,0,3397:63,69,57,52
chr1	11721854	.	C	T	1591.04	PASS	AC=1;AF=0.714;AN=2;DP=4638;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,78:149:99:2078,0,1853:34,37,36,42
chr1	11724092	.	G	C	386.78	PASS	AC=1;AF=0.736;AN=2;DP=1938;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,24:60:99:454,0,875:22,14,13,11
chr1	11724161	.	C	T	705.56	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=1.836;FractionInformativeReads=1;MQ=60;MQRankSum=0.704;QD=8.93;ReadPosRankSum=-0.664;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,36:79:99:734,0,1106:24,19,18,18
chr1	11731177	.	G	C	206.71	PASS	AC=1;AF=0.639;AN=2;DP=126;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant10-variant11-variant13-variant15-variant18-variant19-variant21-variant22-variant26-variant31-variant32-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:105,0,103:3,0,2,2
chr1	11731927	.	AG	A	212.44	PASS	AC=1;AF=0.587;AN=2;DP=639;MQ=60;set=variant3-variant5-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant31-variant32-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,12:35:99:402,0,1398:18,5,9,3
chr1	11731929	.	G	C	373.53	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=1.591;FractionInformativeReads=1;MQ=60;MQRankSum=-0.231;QD=10.38;ReadPosRankSum=-1.054;SOR=0.336;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,13:36:99:402,0,1398:18,5,9,4
chr1	11735862	.	T	C	1947.21	PASS	AC=1;AF=0.5;AN=2;DP=160;FS=3.687;FractionInformativeReads=1;MQ=60;MQRankSum=-0.37;QD=12.17;ReadPosRankSum=0.852;SOR=0.99;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:82,78:160:99:1975,0,2164:38,44,31,47
chr1	11736131	.	G	A	1406.45	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=4.588;FractionInformativeReads=1;MQ=60;MQRankSum=0.032;QD=16.74;ReadPosRankSum=2.429;SOR=0.321;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,50:84:99:1435,0,965:9,25,19,31
chr1	11737051	.	G	C	1069.23	PASS	AC=1;AF=0.722;AN=2;DP=3683;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,45:84:99:1077,0,937:15,24,18,27
chr1	11740329	.	AGGCGTGAGCCAC	A	553.9	PASS	AC=1;AF=0.563;AN=2;DP=1553;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant19-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,30:82:99:1100,0,6723:32,20,22,8
chr1	11741796	.	T	A	242.83	PASS	AC=1;AF=0.565;AN=2;DP=479;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant19-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:322,0,260:7,5,10,3
chr1	11751379	.	C	T	248.24	PASS	AC=1;AF=0.55;AN=2;DP=205;FractionInformativeReads=1;MQ=60;set=variant8-variant13-variant17-variant21-variant23-variant24-variant28-variant31-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:94:94,0,297:8,3,3,1
chr1	11751642	.	C	G	782.9	PASS	AC=1;AF=0.6;AN=2;DP=475;MQ=60;set=variant8-variant13-variant17-variant21-variant23-variant24-variant28-variant31-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,12:40:99:287,0,693:10,18,3,9
chr1	11772060	.	G	T	1400.3	PASS	AC=1;AF=0.5;AN=2;DP=385;MQ=60;set=variant13-variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,62:130:99:1396,0,1658:29,39,30,32
chr1	11772223	.	G	T	708.69	PASS	AC=1;AF=0.5;AN=2;DP=214;FractionInformativeReads=1;MQ=60;set=variant13-variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,32:68:99:896,0,1148:24,12,19,13
chr1	11772303	.	A	G	1411.14	PASS	AC=2;AF=0.825;AN=2;DP=4872;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3499,320,0:0,0,66,41
chr1	11772526	.	A	G	945.23	PASS	AC=2;AF=0.75;AN=2;DP=2263;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2335,213,0:0,0,23,48
chr1	11779762	.	C	T	1056.61	PASS	AC=2;AF=0.58;AN=2;DP=3246;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant21-variant22-variant23-variant26-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3589,369,0:0,0,64,60
chr1	11781134	.	C	G	1522.62	PASS	AC=2;AF=0.671;AN=2;DP=3259;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2988,258,0:0,0,25,61
chr1	11781768	.	A	G	649.97	PASS	AC=2;AF=1;AN=2;DP=1012;FS=0;MQ=60;MQRankSum=0.714;ReadPosRankSum=1.531;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:624,54,0:0,0,5,13
chr1	11782506	.	T	C	1456.85	PASS	AC=2;AF=0.708;AN=2;DP=4042;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3582,336,0:0,0,48,64
chr1	11782814	.	G	A	582.55	PASS	AC=2;AF=0.671;AN=2;DP=1996;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1583,144,0:0,0,18,30
chr1	11782886	.	C	T	282.21	PASS	AC=2;AF=0.726;AN=2;DP=1013;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:883,81,0:0,0,6,21
chr1	11783295	.	G	A	526.8	PASS	AC=2;AF=0.671;AN=2;DP=1566;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1049,108,0:0,0,19,17
chr1	11784986	.	A	G	1862.2	PASS	AC=2;AF=0.989;AN=2;DP=3001;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2658,255,0:0,0,40,45
chr1	11796168	.	CGGGCG	C	8016.84	PASS	AC=2;AF=1;AN=2;DP=7069;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:5535,376,0:0,0,77,48
chr1	11804590	.	T	G	1883.87	PASS	AC=1;AF=0.5;AN=2;DP=553;MQ=60;set=variant22-variant25-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,76:134:99:1852,0,1469:30,28,39,37
chr1	11807426	.	C	T	2030.6	PASS	AC=1;AF=0.671;AN=2;DP=6175;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,86:194:99:1862,0,2625:58,50,50,36
chr1	11810674	.	G	A	210.78	PASS	AC=1;AF=0.6;AN=2;DP=914;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:491,0,819:11,10,7,7
chr1	11810691	.	C	T	146.82	PASS	AC=1;AF=0.6;AN=2;DP=923;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:424,0,807:11,10,6,6
chr1	11810765	.	T	A	824.99	PASS	AC=2;AF=1;AN=2;DP=1953;FS=0;MQ=60;MQRankSum=1.347;ReadPosRankSum=0.577;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1202,113,0:0,0,18,20
chr1	11810844	.	A	G	698.58	PASS	AC=1;AF=0.625;AN=2;DP=589;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-filterInvariant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:530,0,419:8,11,7,13
chr1	11824242	.	A	C	411.86	PASS	AC=2;AF=0.795;AN=2;DP=884;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:78:1048,78,0:0,0,14,10
chr1	11824260	.	T	C	577.63	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=1.566;FractionInformativeReads=1;MQ=60;MQRankSum=0.486;QD=18.63;ReadPosRankSum=-0.866;SOR=0.352;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,21:31:99:606,0,255:7,3,12,9
chr1	11824303	.	T	C	993.62	PASS	AC=2;AF=0.756;AN=2;DP=1608;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1304,108,0:0,0,27,9
chr1	11824346	.	G	A	1231.62	PASS	AC=2;AF=0.75;AN=2;DP=2087;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1580,147,0:0,0,30,19
chr1	11824556	.	A	G	1282.88	PASS	AC=2;AF=0.744;AN=2;DP=1620;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1899,162,0:0,0,15,39
chr1	11824575	.	T	C	1536.01	PASS	AC=2;AF=0.795;AN=2;DP=1269;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1845,129,0:0,0,13,30
chr1	11824578	.	C	T	1536.01	PASS	AC=2;AF=0.744;AN=2;DP=1225;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1765,120,0:0,0,11,27
chr1	11825851	.	G	C	2300.83	PASS	AC=2;AF=0.808;AN=2;DP=2084;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2082,192,0:0,0,45,19
chr1	11826630	.	C	T	3950.11	PASS	AC=2;AF=0.808;AN=2;DP=6267;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,150:151:99:4725,408,0:0,1,79,71
chr1	11827180	.	A	G	2514.27	PASS	AC=2;AF=1;AN=2;DP=3712;FS=0;MQRankSum=0.197;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2128,207,0:0,0,49,20
chr1	11827304	.	A	G	2165.64	PASS	AC=2;AF=1;AN=2;DP=3456;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2353,213,0:0,0,38,33
chr1	11827355	.	A	G	1169.09	PASS	AC=2;AF=0.808;AN=2;DP=1716;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1337,135,0:0,0,18,27
chr1	11828238	.	G	A	4150.89	PASS	AC=2;AF=0.808;AN=2;DP=6339;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4645,447,0:0,0,84,65
chr1	11828319	.	G	A	3768.55	PASS	AC=2;AF=0.808;AN=2;DP=6090;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5361,506,0:0,0,80,89
chr1	11831615	.	C	T	5209.33	PASS	AC=2;AF=0.795;AN=2;DP=4509;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3462,330,0:0,0,58,52
chr1	11831756	.	A	G	1206.15	PASS	AC=2;AF=0.788;AN=2;DP=1583;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1693,144,0:0,0,12,36
chr1	11832100	.	T	A	2778.98	PASS	AC=2;AF=0.73;AN=2;DP=2964;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2366,233,0:0,0,45,33
chr1	11832311	.	G	C	1113.31	PASS	AC=2;AF=0.743;AN=2;DP=1869;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2099,183,0:0,0,16,45
chr1	11836441	.	T	C	7923.65	PASS	AC=2;AF=0.989;AN=2;DP=7958;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:7188,494,0:0,0,96,62
chr1	11836442	.	G	A	7432.29	PASS	AC=2;AF=0.716;AN=2;DP=6863;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:7188,494,0:0,0,99,65
chr1	11836628	.	T	C	5274.21	PASS	AC=2;AF=0.775;AN=2;DP=6865;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5357,482,0:0,0,77,84
chr1	11836682	.	C	T	3739.16	PASS	AC=2;AF=0.716;AN=2;DP=4415;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4040,383,0:0,0,60,69
chr1	11836868	.	A	G	370.91	PASS	AC=2;AF=0.782;AN=2;DP=705;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:565,51,0:0,0,7,10
chr1	11838848	.	G	T	4221.75	PASS	AC=2;AF=0.716;AN=2;DP=5472;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:5488,483,0:0,0,93,69
chr1	11839005	.	C	A	1745.79	PASS	AC=1;AF=0.5;AN=2;DP=116;FS=4.572;FractionInformativeReads=1;MQ=60;MQRankSum=-1.82;QD=15.05;ReadPosRankSum=3.638;SOR=0.85;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,66:116:99:1774,0,1284:27,23,29,37
chr1	11839966	.	G	A	2011.5	PASS	AC=2;AF=0.716;AN=2;DP=3049;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2455,239,0:0,0,40,40
chr1	11839992	.	G	T	490.65	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.689;QD=7.11;ReadPosRankSum=1.024;SOR=0.578;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,22:69:99:519,0,1316:22,25,11,11
chr1	11839998	.	T	C	1831.83	PASS	AC=2;AF=0.943;AN=2;DP=3041;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2463,210,0:0,0,33,37
chr1	11842144	.	C	G	941.67	PASS	AC=2;AF=0.716;AN=2;DP=2131;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1545,132,0:0,0,30,14
chr1	11844330	.	C	T	5522.19	PASS	AC=1;AF=0.708;AN=2;DP=6878;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,93:186:99:2298,0,2307:48,45,46,47
chr1	11844520	.	C	T	1556.17	PASS	AC=1;AF=0.5;AN=2;DP=570;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant18-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,56:95:99:1611,0,1017:19,20,24,32
chr1	11844827	.	A	G	102.92	PASS	AC=2;AF=0.988;AN=2;DP=288;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.742;ReadPosRankSum=0.742;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:370,33,0:0,0,3,8
chr1	11845113	.	G	A	938.93	PASS	AC=2;AF=0.989;AN=2;DP=1430;MQ=60;MQRankSum=1.526;ReadPosRankSum=1.443;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1731,180,0:0,0,35,25
chr1	11845169	.	T	G	2244.83	PASS	AC=2;AF=0.716;AN=2;DP=2580;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2857,280,0:0,0,55,39
chr1	11846092	.	G	GT	700.62	PASS	AC=2;AF=0.977;AN=2;DP=1286;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:821,95,0:0,0,22,10
chr1	11846252	.	G	A	2679.15	PASS	AC=2;AF=0.782;AN=2;DP=4482;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3232,314,0:0,0,56,49
chr1	11846447	.	G	A	626.48	PASS	AC=2;AF=0.989;AN=2;DP=1061;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:577,51,0:0,0,5,12
chr1	11847334	.	G	GGAA	2354.32	PASS	AC=2;AF=0.716;AN=2;DP=2248;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:3300,222,0:0,0,45,26
chr1	11847370	.	C	T	1191.61	PASS	AC=1;AF=0.5;AN=2;DP=96;FS=1.661;FractionInformativeReads=1;MQ=60;MQRankSum=-0.176;QD=12.41;ReadPosRankSum=-1.334;SOR=0.89;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,47:96:99:1220,0,1214:28,21,29,18
chr1	11847759	.	C	T	3767.72	PASS	AC=1;AF=0.694;AN=2;DP=5239;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,62:130:99:1652,0,1752:32,36,29,33
chr1	11848879	.	A	G	1796.01	PASS	AC=2;AF=0.977;AN=2;DP=3740;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,91:92:99:2798,234,0:1,0,34,57
chr1	11849447	.	A	G	2731.45	PASS	AC=2;AF=0.989;AN=2;DP=4053;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2341,228,0:0,0,35,41
chr1	11849645	.	TGCTGCTTTCAGTCTCTCCTAGCG	T	1088.04	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=0;FractionInformativeReads=0.963;MQ=60;MQRankSum=1.626;QD=13.6;ReadPosRankSum=2.965;SOR=0.797;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,31:77:99:1125,0,10214:22,24,14,17
chr1	11850105	.	TTC	T	1296.55	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0.929;FractionInformativeReads=1;MQ=60;MQRankSum=0.56;QD=19.64;ReadPosRankSum=0.419;SOR=0.558;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,36:66:99:1334,0,1099:17,13,19,17
chr1	11850365	.	T	G	3064.38	PASS	AC=1;AF=0.769;AN=2;DP=4434;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,56:124:99:1337,0,1530:27,41,30,26
chr1	11852524	.	C	A	228.11	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.206;QD=12.01;ReadPosRankSum=0.289;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:256,0,317:2,9,1,7
chr1	11854457	.	G	A	9712.27	PASS	AC=1;AF=0.977;AN=2;DP=9482;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:111,83:194:99:2141,0,2842:60,51,45,38
chr1	11854755	.	G	A	3171.03	PASS	AC=1;AF=0.681;AN=2;DP=3609;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,41:69:99:974,0,716:14,14,22,19
chr1	11860683	.	T	C	136.72	PASS	AC=2;AF=0.786;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:279,24,0:0,0,2,6
chr1	11863195	.	G	A	1052.3	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=6.235;FractionInformativeReads=1;MQ=60;MQRankSum=0.077;QD=13.15;ReadPosRankSum=1.502;SOR=1.43;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,39:80:99:1081,0,1136:16,25,10,29
chr1	11864505	.	C	CA,CAA	150.88	PASS	AC=2,0;AF=0.808,0.077;AN=2;DP=153;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:3:12:0,0,3,0
chr1	11865284	.	A	AC	887.28	PASS	AC=1;AF=0.5;AN=2;DP=293;MQ=60;set=variant3-variant4-variant14-variant15-variant19-variant24-variant30-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:467,0,506:11,5,10,5
chr1	11865585	.	C	T	174.91	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.278;QD=15.9;ReadPosRankSum=0.678;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:203,0,104:1,3,2,5
chr1	11867044	.	T	C	237.06	PASS	AC=2;AF=0.805;AN=2;DP=1197;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1100,96,0:0,0,21,11
chr1	11876417	.	C	T	489.01	PASS	AC=1;AF=0.694;AN=2;DP=547;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:388,0,181:5,0,10,1
chr1	11879685	.	C	T	1324.55	PASS	AC=1;AF=0.6;AN=2;DP=1723;MQ=60;set=variant-variant3-variant4-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:657,0,718:7,19,6,18
chr1	11879699	.	A	G	1054.85	PASS	AC=1;AF=0.5;AN=2;DP=707;MQ=60;set=variant3-variant4-variant9-variant14-variant15-variant16-variant19-variant24-variant25-variant30-variant31-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:586,0,613:5,16,4,16
chr1	11884555	.	A	G	3169.67	PASS	AC=2;AF=1;AN=2;DP=4917;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3378,326,0:0,0,58,51
chr1	11886124	.	CT	C,CTT	286.19	PASS	AC=0,1;AF=0.222,0.333;AN=2;DP=196;MQ=60;set=variant2-variant7-variant9-variant16-variant25-variant33-variant34-variant41-variant42	GT:DP:GQ:SB	0/2:26:99:11,5,8,2
chr1	11886383	.	C	CTG	1104.99	PASS	AC=1;AF=0.5;AN=2;DP=749;MQ=60;set=variant3-variant4-variant9-variant14-variant15-variant16-variant19-variant24-variant25-variant30-variant31-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:802,0,749:8,12,7,14
chr1	11887303	.	A	G	757.33	PASS	AC=1;AF=0.5;AN=2;DP=693;MQ=60;set=variant3-variant4-variant9-variant14-variant15-variant16-variant19-variant24-variant25-variant30-variant31-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,22:34:99:679,0,327:6,6,6,16
chr1	11887373	.	T	TG	391.39	PASS	AC=2;AF=0.756;AN=2;DP=1579;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1009,84,0:0,0,9,19
chr1	11887382	.	A	G	497.66	PASS	AC=1;AF=0.5;AN=2;DP=588;MQ=60;set=variant3-variant4-variant9-variant14-variant15-variant16-variant19-variant24-variant25-variant30-variant31-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:245,0,506:7,11,3,7
chr1	11888384	.	A	G	1001.56	PASS	AC=1;AF=0.613;AN=2;DP=1673;MQ=60;set=variant-variant3-variant4-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:615,0,794:17,14,11,13
chr1	11889468	.	A	G	1530.75	PASS	AC=1;AF=0.617;AN=2;DP=3526;MQ=60;set=variant-variant3-variant4-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,60:128:99:1698,0,1872:31,37,29,31
chr1	11896006	.	C	T	637.95	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=2.834;FractionInformativeReads=1;MQ=60;MQRankSum=-1.682;QD=13.87;ReadPosRankSum=-2.166;SOR=1.259;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:666,0,682:16,8,17,5
chr1	11897592	.	A	G	174.97	PASS	AC=1;AF=0.6;AN=2;DP=2322;MQ=60;set=variant-variant3-variant4-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,45:86:99:1246,0,1068:14,27,14,31
chr1	11899033	.	G	T	758.3	PASS	AC=1;AF=0.556;AN=2;DP=2121;MQ=60;set=variant-variant3-variant4-variant9-variant14-variant15-variant19-variant24-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,66:132:99:1650,0,1917:24,42,27,39
chr1	11900035	.	G	A	246.22	PASS	AC=2;AF=1;AN=2;DP=1346;FS=0;MQ=60;MQRankSum=0.037;ReadPosRankSum=-1.216;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1312,122,0:0,0,29,12
chr1	11900169	.	G	T	1715.71	PASS	AC=1;AF=0.5;AN=2;DP=139;FS=1.346;FractionInformativeReads=1;MQ=60;MQRankSum=-0.108;QD=12.34;ReadPosRankSum=2.129;SOR=0.605;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,77:139:99:1744,0,1492:33,29,38,39
chr1	11901718	.	C	G	693.34	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=1.035;FractionInformativeReads=1;MQ=60;MQRankSum=0.22;QD=13.33;ReadPosRankSum=0.018;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:722,0,845:13,14,11,14
chr1	11907648	.	C	T	2288.35	PASS	AC=1;AF=0.5;AN=2;DP=713;FractionInformativeReads=1;MQ=60;set=variant15-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:98,68:166:99:1776,0,2458:51,47,29,39
chr1	11917464	.	G	A	2025.38	PASS	AC=1;AF=0.5;AN=2;DP=378;MQ=60;set=variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:90,67:157:99:1551,0,2160:50,40,39,28
chr1	11918927	.	TCTGCTG	TCTG,TCTGCTGCTG,T	2320.3	PASS	AC=0,1,0;AF=0.2,0.2,0.1;AN=2;DP=830;MQ=60;set=variant3-variant21-variant34-variant35-variant41	GT:DP:GQ:SB	0/2:118:99:20,44,24,30
chr1	11971345	.	T	C	137.97	PASS	AC=2;AF=0.706;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:384,33,0:0,0,3,8
chr1	11979869	.	C	T	2004.39	PASS	AC=1;AF=0.5;AN=2;DP=1612;MQ=60;set=variant8-variant12-variant14-variant15-variant17-variant18-variant20-variant26-variant29-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,63:129:99:1580,0,1800:29,37,24,39
chr1	11979909	.	T	C	5013.17	PASS	AC=2;AF=0.691;AN=2;DP=4736;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3764,324,0:0,0,51,57
chr1	11980449	.	T	C	1052.35	PASS	AC=1;AF=0.5;AN=2;DP=1564;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant26-variant29-variant31-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,42:80:99:969,0,915:19,19,20,22
chr1	11982373	.	A	G	582.56	PASS	AC=1;AF=0.591;AN=2;DP=427;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant15-variant18-variant21-variant22-variant24-variant25-variant28-variant32-variant33-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:81:81,0,277:7,4,3,1
chr1	11982544	.	T	C	3550.75	PASS	AC=2;AF=0.767;AN=2;DP=5045;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3166,309,0:0,0,62,41
chr1	11983206	.	A	G	5793.97	PASS	AC=2;AF=0.691;AN=2;DP=10495;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,287:287:99:8530,859,0:0,0,149,138
chr1	11986535	.	G	A	647.49	PASS	AC=2;AF=0.679;AN=2;DP=992;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1187,123,0:0,0,19,23
chr1	11986553	.	A	AG	635.67	PASS	AC=2;AF=1;AN=2;DP=1448;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1369,111,0:0,0,15,22
chr1	11986621	.	T	C	100.47	PASS	AC=2;AF=0.688;AN=2;DP=498;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:644,57,0:0,0,7,12
chr1	11995176	.	A	G	698.29	PASS	AC=2;AF=0.56;AN=2;DP=949;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1256,120,0:0,0,13,27
chr1	11995215	.	A	G	351.08	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=1.637;FractionInformativeReads=1;MQ=60;MQRankSum=-1.106;QD=12.54;ReadPosRankSum=-0.783;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:379,0,385:5,10,3,10
chr1	12009777	.	C	G	78.17	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=0;FractionInformativeReads=1;MQ=60;set=variant31-variant32-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:286,0,141:3,1,7,3
chr1	12009911	.	G	A	864.55	PASS	AC=1;AF=0.5;AN=2;DP=438;FractionInformativeReads=1;MQ=60;set=variant31-variant32-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,37:76:99:848,0,986:23,16,23,14
chr1	12009956	.	G	A	931.08	PASS	AC=1;AF=0.615;AN=2;DP=1203;MQ=60;set=variant2-variant12-variant14-variant15-variant17-variant26-variant29-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,44:86:99:1102,0,1028:21,21,24,20
chr1	12018290	.	T	C	295.62	PASS	AC=1;AF=0.625;AN=2;DP=147;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant15-variant17-variant18-variant26-variant29-variant31-variant32-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:37:81,0,37:0,1,0,2
chr1	12021044	.	T	C	142.23	PASS	AC=1;AF=0.667;AN=2;DP=54;FS=0;FractionInformativeReads=1;MQ=60;set=variant12-variant26-variant29-variant31-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:74:115,0,74:1,2,2,2
chr1	12025416	.	G	A	286.45	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=2.688;FractionInformativeReads=1;MQ=60;MQRankSum=-1.109;QD=20.46;ReadPosRankSum=2.285;SOR=1.911;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:315,0,148:4,2,7,1
chr1	12030759	.	G	T	1564.16	PASS	AC=1;AF=0.5;AN=2;DP=492;FractionInformativeReads=1;MQ=60;set=variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:108,89:197:99:1949,0,2568:55,53,49,40
chr1	12032654	.	C	G	142.27	PASS	AC=1;AF=0.5;AN=2;DP=62;FractionInformativeReads=1;MQ=60;set=variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:302,0,264:6,4,5,6
chr1	12033113	.	A	G	609.05	PASS	AC=1;AF=0.683;AN=2;DP=1003;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:631,0,732:4,10,5,12
chr1	12033120	.	G	C	511.77	PASS	AC=1;AF=0.683;AN=2;DP=880;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:615,0,661:4,8,4,11
chr1	12034805	.	T	C	3002.71	PASS	AC=1;AF=0.5;AN=2;DP=923;FractionInformativeReads=1;MQ=60;set=variant18-variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:118,109:227:99:4048,0,6024:52,66,54,55
chr1	12034814	.	C	G	3210.97	PASS	AC=1;AF=0.5;AN=2;DP=612;FractionInformativeReads=1;MQ=60;set=variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:112,104:216:99:3972,0,5937:46,66,51,53
chr1	12035305	.	G	C	1346.42	PASS	AC=1;AF=0.5;AN=2;DP=366;FractionInformativeReads=1;MQ=60;set=variant18-variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,33:72:99:807,0,1060:24,15,16,17
chr1	12040404	.	C	T	1418.74	PASS	AC=1;AF=0.5;AN=2;DP=111;FS=3.486;FractionInformativeReads=1;MQ=60;MQRankSum=-0.475;QD=12.78;ReadPosRankSum=-0.074;SOR=0.934;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,53:111:99:1447,0,1405:28,30,30,23
chr1	12040442	.	T	A	1250.82	PASS	AC=1;AF=0.5;AN=2;DP=113;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.368;QD=11.07;ReadPosRankSum=-0.279;SOR=0.736;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,52:113:99:1279,0,1488:30,31,25,27
chr1	12040479	.	T	C	3469.9	PASS	AC=1;AF=0.679;AN=2;DP=3093;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,51:98:99:1211,0,1103:22,25,24,27
chr1	12042261	.	A	G	188.54	PASS	AC=1;AF=0.717;AN=2;DP=346;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:96:96,0,244:4,6,2,3
chr1	12049384	.	C	T	691.08	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=0;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:365,0,364:6,10,6,11
chr1	12052553	.	C	G	1814.55	PASS	AC=1;AF=0.5;AN=2;DP=203;FS=0;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,47:78:99:1346,0,839:23,8,34,13
chr1	12056440	.	C	T	232.73	PASS	AC=1;AF=0.688;AN=2;DP=755;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:415,0,657:1,17,1,12
chr1	12057593	.	A	C	709.38	PASS	AC=1;AF=0.5;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:649,0,253:1,9,4,15
chr1	12058606	.	AAAAAC	A	1326.88	PASS	AC=1;AF=0.732;AN=2;DP=1288;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:264,0,528:9,1,4,3
chr1	12062205	.	A	G	984	PASS	AC=1;AF=0.732;AN=2;DP=2202;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,11:43:99:247,0,814:13,19,4,7
chr1	12066956	.	C	G	384.04	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.047;QD=19.2;ReadPosRankSum=0.96;SOR=0.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,15:20:76:412,0,76:2,3,6,9
chr1	12069586	.	C	T	924.42	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=5.907;FractionInformativeReads=1;MQ=60;MQRankSum=1.141;QD=14.67;ReadPosRankSum=1.183;SOR=0.24;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,35:63:99:953,0,799:23,5,24,11
chr1	12069798	.	T	C	1401.63	PASS	AC=1;AF=0.583;AN=2;DP=712;MQ=60;set=variant10-variant12-variant14-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:65,64:129:99:1543,0,1712:25,40,25,39
chr1	12071680	.	A	G	3761.37	PASS	AC=1;AF=0.732;AN=2;DP=4146;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,59:114:99:1599,0,1469:27,28,31,28
chr1	12072399	.	T	C	1455.37	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.303;QD=16.35;ReadPosRankSum=0.095;SOR=0.61;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,51:89:99:1484,0,1060:21,17,27,24
chr1	12072518	.	G	C	2616.67	PASS	AC=1;AF=0.73;AN=2;DP=3787;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,46:99:99:1188,0,1537:29,24,17,29
chr1	12072783	.	C	A	982.07	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=1.679;FractionInformativeReads=1;MQ=60;MQRankSum=0.206;QD=10.91;ReadPosRankSum=1.82;SOR=0.883;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,44:90:99:1010,0,1238:23,23,24,20
chr1	12073251	.	G	GA	1113.41	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=1.982;FractionInformativeReads=0.94;MQ=60;MQRankSum=1.302;QD=13.41;ReadPosRankSum=0.305;SOR=0.43;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,51:78:99:1151,0,509:16,11,26,25
chr1	12081637	.	G	A	657.31	PASS	AC=1;AF=0.5;AN=2;DP=293;FractionInformativeReads=1;MQ=60;set=variant9-variant16-variant34-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,24:62:99:506,0,1039:23,15,15,9
chr1	12082334	.	A	T	2367.83	PASS	AC=1;AF=0.55;AN=2;DP=3833;MQ=60;set=variant-variant5-variant7-variant9-variant12-variant14-variant16-variant18-variant22-variant24-variant25-variant28-variant29-variant33-variant34-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:77,77:154:99:2052,0,2020:32,45,32,45
chr1	12082881	.	C	T	571.85	PASS	AC=1;AF=0.55;AN=2;DP=2041;MQ=60;set=variant-variant5-variant7-variant9-variant12-variant14-variant16-variant18-variant22-variant24-variant25-variant28-variant29-variant33-variant34-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,48:87:99:1098,0,859:16,23,21,27
chr1	12082926	.	A	G	902.26	PASS	AC=1;AF=0.726;AN=2;DP=2821;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:825,0,748:11,19,9,21
chr1	12090001	.	T	C	1797.6	PASS	AC=1;AF=0.55;AN=2;DP=3987;MQ=60;set=variant-variant5-variant7-variant9-variant12-variant14-variant16-variant18-variant22-variant24-variant25-variant28-variant29-variant33-variant34-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:91,78:169:99:1980,0,2363:41,50,41,37
chr1	12091210	.	T	C	532.5	PASS	AC=1;AF=0.714;AN=2;DP=886;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:91:91,0,399:9,3,3,1
chr1	12144219	.	A	G	109.69	PASS	AC=1;AF=0.706;AN=2;DP=710;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:226,0,161:4,3,6,2
chr1	12144662	.	T	A	800.81	PASS	AC=1;AF=0.607;AN=2;DP=1580;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,30:57:99:1200,0,1586:13,14,10,20
chr1	12144667	.	C	T	764.28	PASS	AC=1;AF=0.607;AN=2;DP=1550;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:1203,0,1566:11,15,11,21
chr1	12144801	.	CTG	C	359.89	PASS	AC=1;AF=0.62;AN=2;DP=450;MQ=60;set=variant2-variant5-variant7-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:109,0,198:0,5,1,2
chr1	12170287	.	C	T	1553.67	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=4.892;FractionInformativeReads=1;MQ=60;MQRankSum=-1.041;QD=14.39;ReadPosRankSum=0.991;SOR=1.214;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,61:108:99:1582,0,1120:22,25,22,39
chr1	12175729	.	C	T	2188.64	PASS	AC=2;AF=1;AN=2;DP=5523;FS=0;MQ=60;MQRankSum=0.408;ReadPosRankSum=0.324;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3259,303,0:0,0,56,45
chr1	12175818	.	A	G	1020.36	PASS	AC=1;AF=0.647;AN=2;DP=1615;set=variant2-variant6-variant12-variant13-variant18-variant21-variant22-variant23-variant25-variant26-variant32-variant34-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,37:85:99:951,0,1237:18,30,14,23
chr1	12183174	.	A	C	357.78	PASS	AC=1;AF=0.721;AN=2;DP=1577;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:642,0,568:13,8,15,8
chr1	12198179	.	G	A	885.03	PASS	AC=2;AF=0.7;AN=2;DP=1230;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1362,104,0:0,0,33,2
chr1	12198297	.	T	C	2960.23	PASS	AC=2;AF=0.577;AN=2;DP=2887;MQ=60;set=variant6-variant11-variant14-variant18-variant22-variant26-variant27-variant29-variant34-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,224:224:99:6558,671,0:0,0,128,96
chr1	12198635	.	T	C	1044.18	PASS	AC=1;AF=0.81;AN=2;DP=3240;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,48:97:99:1113,0,1238:18,31,22,26
chr1	12204354	.	A	G	2601.81	PASS	AC=2;AF=0.942;AN=2;DP=2447;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1950,167,0:0,0,14,42
chr1	12248942	.	A	G	3468.32	PASS	AC=1;AF=0.614;AN=2;DP=1976;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,40:80:99:1035,0,1030:13,27,13,27
chr1	12248965	.	A	G	2292.58	PASS	AC=1;AF=0.614;AN=2;DP=1381;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,28:58:99:718,0,793:10,20,7,21
chr1	12249020	.	C	T	715.15	PASS	AC=1;AF=0.614;AN=2;DP=594;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:176,0,518:5,12,2,6
chr1	12249031	.	A	G	786.18	PASS	AC=1;AF=0.775;AN=2;DP=927;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:159,0,350:3,8,2,5
chr1	12251191	.	T	A	649.44	PASS	AC=1;AF=0.605;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant11-variant15-variant16-variant19-variant21-variant23-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:183,0,465:2,12,4,4
chr1	12251765	.	T	G	2813.6	PASS	AC=1;AF=0.591;AN=2;DP=2773;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,55:115:99:1394,0,1407:36,24,31,24
chr1	12251808	.	T	G	4140.96	PASS	AC=1;AF=0.677;AN=2;DP=5055;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,80:158:99:2060,0,1932:43,35,46,34
chr1	12252333	.	CTGTG	CTGTGTG,C,CTG	269.89	PASS	AC=1,0,1;AF=0.196,0.375,0.054;AN=2;DP=535;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant11-variant13-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/1:26:99:0,0,23,3
chr1	12252892	.	C	T	557.11	PASS	AC=1;AF=0.595;AN=2;DP=548;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:262,0,270:7,2,8,2
chr1	12252955	.	T	G	1345.87	PASS	AC=1;AF=0.595;AN=2;DP=1293;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,38:63:99:1066,0,577:16,9,26,12
chr1	12253351	.	T	C	978.52	PASS	AC=1;AF=0.583;AN=2;DP=512;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant21-variant23-variant29-variant32-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,8:29:99:224,0,645:4,17,2,6
chr1	12254201	.	G	A	1155.02	PASS	AC=1;AF=0.605;AN=2;DP=913;MQ=60;set=variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant21-variant23-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:653,0,795:6,21,5,18
chr1	12261972	.	A	G	1838.79	PASS	AC=1;AF=0.579;AN=2;DP=1399;MQ=60;set=variant2-variant3-variant11-variant15-variant16-variant20-variant21-variant23-variant28-variant29-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,36:82:99:920,0,1132:22,24,21,15
chr1	12266591	.	A	G	336.68	PASS	AC=2;AF=0.647;AN=2;DP=236;MQ=60;set=variant2-variant3-variant11-variant15-variant16-variant21-variant23-variant24-variant25-variant28-variant29-variant32-variant35-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:308,27,0:0,0,6,3
chr1	12266612	.	A	G	98.3	PASS	AC=2;AF=0.63;AN=2;DP=403;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant9-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant32-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:480,42,0:0,0,11,3
chr1	12267265	.	A	G	633.28	PASS	AC=2;AF=0.609;AN=2;DP=2211;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2478,234,0:0,0,28,50
chr1	12267292	.	C	T	1149.03	PASS	AC=2;AF=0.784;AN=2;DP=2126;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2044,174,0:0,0,18,40
chr1	12267464	.	C	A	321.92	PASS	AC=1;AF=0.583;AN=2;DP=406;MQ=60;set=variant5-variant6-variant8-variant17-variant18-variant20-variant22-variant30-variant33-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,12:40:99:316,0,780:20,8,8,4
chr1	12267999	.	C	T	114.39	PASS	AC=1;AF=0.758;AN=2;DP=276;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:117,0,114:3,1,3,2
chr1	12316747	.	GT	GTTT,G,GTT	87.15	PASS	AC=0,1,0;AF=0.25,0.125,0.125;AN=2;DP=103;set=variant7-filterInvariant26-variant41-filterInvariant43	GT:DP:GQ:SB	0/2:12:57:1,6,0,5
chr1	12336099	.	G	A	1437.96	PASS	AC=1;AF=0.5;AN=2;DP=129;FS=1.398;FractionInformativeReads=1;MQ=60;MQRankSum=-1.507;QD=11.15;ReadPosRankSum=-3.04;SOR=0.865;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,61:129:99:1466,0,1987:34,34,33,28
chr1	12401868	.	A	C	1869.57	PASS	AC=1;AF=0.791;AN=2;DP=4072;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,47:97:99:1218,0,1535:36,14,28,19
chr1	12418700	.	T	C	247.45	PASS	AC=2;AF=0.989;AN=2;DP=1501;FS=0;MQ=60;MQRankSum=1.79;ReadPosRankSum=-0.271;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1140,99,0:0,0,7,26
chr1	12469828	.	C	T	632.73	PASS	AC=1;AF=0.5;AN=2;DP=122;MQ=60;set=variant8-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:599,0,516:15,7,16,5
chr1	12515905	.	G	A	35.47	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.72;QD=5.91;ReadPosRankSum=0;SOR=0.039;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:64:64,0,165:4,0,1,1
chr1	12538726	.	G	A	1816.21	PASS	AC=1;AF=0.5;AN=2;DP=1008;MQ=60;set=variant3-variant9-variant13-variant16-variant18-variant24-variant25-variant26-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,32:88:99:729,0,1504:37,19,20,12
chr1	12567160	.	C	T	2370.05	PASS	AC=1;AF=0.5;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant9-variant16-variant18-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:87,62:149:99:1811,0,2444:43,44,29,33
chr1	12567232	.	A	G	5205.33	PASS	AC=2;AF=1;AN=2;DP=9175;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,217:217:99:6496,651,0:0,0,112,105
chr1	12569789	.	A	T	2170.27	PASS	AC=1;AF=0.563;AN=2;DP=1765;MQ=60;set=variant9-variant13-variant16-variant18-variant20-variant24-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:103,108:211:99:2585,0,2511:55,48,62,46
chr1	12570579	.	C	CTG,CTGTG,CTGTGTG,CTGTGTGTGTG	473.63	PASS	AC=2,0,0,0;AF=0.547,0.07,0.012,0.012;AN=2;DP=1776;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:44:67:0,2,18,24
chr1	12638964	.	T	C	3833.75	PASS	AC=1;AF=0.845;AN=2;DP=8071;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,92:182:99:2365,0,2100:44,46,40,52
chr1	12639018	.	C	T	3619.05	PASS	AC=1;AF=0.683;AN=2;DP=5132;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:84,70:154:99:1861,0,2304:42,42,31,39
chr1	12639168	.	A	G	4262.3	PASS	AC=1;AF=0.805;AN=2;DP=7455;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,102:204:99:2535,0,2505:49,53,52,50
chr1	12725943	.	T	C	2310.77	PASS	AC=1;AF=0.611;AN=2;DP=1405;FractionInformativeReads=1;MQ=60;set=variant3-variant12-variant13-variant17-variant18-variant25-variant28-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,80:162:99:1958,0,2078:50,32,52,28
chr1	12776134	.	C	A	796.65	PASS	AC=2;AF=0.802;AN=2;DP=3538;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2731,233,0:0,0,54,24
chr1	12776218	.	A	C	5005.41	PASS	AC=2;AF=0.872;AN=2;DP=8352;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:6026,582,0:0,0,110,84
chr1	12776344	.	A	T	2228.74	PASS	AC=2;AF=0.779;AN=2;DP=9087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,213:213:99:6634,637,0:0,0,91,122
chr1	12779560	.	T	C	6294.04	PASS	AC=2;AF=0.872;AN=2;DP=6831;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3713,377,0:0,0,58,68
chr1	12779618	.	T	C	3901.77	PASS	AC=2;AF=0.872;AN=2;DP=4623;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2968,294,0:0,0,39,59
chr1	12785093	.	T	G	3006.34	PASS	AC=2;AF=0.837;AN=2;DP=3617;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2778,287,0:0,0,50,46
chr1	12785494	.	G	T	5028.71	PASS	AC=2;AF=0.779;AN=2;DP=6667;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5176,494,0:0,0,76,89
chr1	12786070	.	A	G	1374.93	PASS	AC=2;AF=0.779;AN=2;DP=2478;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1857,164,0:0,0,22,33
chr1	12786273	.	T	C	1799.13	PASS	AC=2;AF=0.779;AN=2;DP=2670;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2015,186,0:0,0,31,31
chr1	12786363	.	C	T	1871.6	PASS	AC=2;AF=0.779;AN=2;DP=3133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2218,213,0:0,0,36,35
chr1	12786417	.	A	G	1421.88	PASS	AC=2;AF=0.779;AN=2;DP=3087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1910,186,0:0,0,32,31
chr1	12786444	.	G	A	1236.83	PASS	AC=2;AF=0.767;AN=2;DP=2961;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2089,198,0:0,0,33,33
chr1	12787632	.	C	T	1817.7	PASS	AC=2;AF=0.779;AN=2;DP=2757;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2270,213,0:0,0,39,32
chr1	12787980	.	A	G	1605.21	PASS	AC=2;AF=0.779;AN=2;DP=2359;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1879,171,0:0,0,33,24
chr1	12788406	.	G	A	572.58	PASS	AC=2;AF=0.841;AN=2;DP=618;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:71:705,71,0:0,0,14,10
chr1	12820870	.	T	C	1612.88	PASS	AC=2;AF=0.826;AN=2;DP=4221;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3409,314,0:0,0,41,64
chr1	12821476	.	GTT	G,GT	114.33	PASS	AC=2,0;AF=0.828,0.086;AN=2;DP=251;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant38-variant40-variant41-variant43	GT:DP:GQ:SB	1/1:11:32:0,0,3,8
chr1	12822126	.	C	T	377.99	PASS	AC=2;AF=0.775;AN=2;DP=382;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:370,33,0:0,0,3,8
chr1	12822162	.	A	G	277.08	PASS	AC=2;AF=0.77;AN=2;DP=279;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:283,24,0:0,0,3,5
chr1	12822586	.	T	C	255.13	PASS	AC=2;AF=0.819;AN=2;DP=308;FractionInformativeReads=1;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:218,18,0:0,0,5,1
chr1	12823036	.	TA	T	134.62	PASS	AC=2;AF=0.66;AN=2;DP=743;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant16-variant17-variant19-variant20-variant21-variant26-variant27-variant30-variant31-variant35-variant36-variant38-filterInvariant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:428,42,0:0,0,3,11
chr1	12823667	.	G	A	2641.79	PASS	AC=2;AF=0.756;AN=2;DP=3973;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2832,237,0:0,0,49,30
chr1	12835868	.	T	C	2269.28	PASS	AC=2;AF=0.813;AN=2;DP=4423;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3503,320,0:0,0,49,58
chr1	12837634	.	T	A,C	3692.81	PASS	AC=2,0;AF=0.793,0.012;AN=2;DP=7430;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:164:99:0,0,83,81
chr1	12837840	.	G	C	2198.78	PASS	AC=2;AF=0.813;AN=2;DP=2765;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2201,206,0:0,0,23,46
chr1	12853403	.	A	C	384.89	PASS	AC=1;AF=0.667;AN=2;DP=945;set=variant-variant3-variant7-variant8-variant9-variant10-variant14-variant18-variant20-variant24-variant25-variant28-variant32-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:554,0,631:13,11,12,11
chr1	12853975	.	G	T	73.35	PASS	AC=1;AF=0.5;AN=2;DP=1739;set=filterInvariant-variant3-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant11-variant14-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,6:34:77:77,0,871:15,13,5,1
chr1	12854021	.	G	T	1422.74	PASS	AC=1;AF=0.5;AN=2;DP=4511;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,34:70:99:1313,0,1612:26,10,20,14
chr1	12854022	.	A	T	1506.72	PASS	AC=1;AF=0.5;AN=2;DP=4542;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:37,34:71:99:1307,0,1676:26,11,20,14
chr1	12854041	.	T	C	1681.45	PASS	AC=1;AF=0.5;AN=2;DP=5169;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:44,37:81:99:1416,0,1754:28,16,21,16
chr1	12854052	.	C	T	461.21	PASS	AC=1;AF=0.5;AN=2;DP=5129;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant14-variant15-variant16-variant17-variant19-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,22:85:99:270,0,2651:40,23,11,11
chr1	12854068	.	T	C	376.95	PASS	AC=1;AF=0.5;AN=2;DP=2494;set=filterInvariant3-variant4-filterInvariant6-filterInvariant7-variant11-variant13-filterInvariant14-variant18-filterInvariant20-variant29-filterInvariant30-filterInvariant32-variant33-filterInvariant40-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:89,19:108:99:152,0,2714:55,34,10,9
chr1	12854090	.	T	A	1050.41	PASS	AC=1;AF=0.5;AN=2;DP=6252;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,19:126:99:464,0,4641:62,45,8,11
chr1	12854097	.	T	C	1074.33	PASS	AC=1;AF=0.5;AN=2;DP=6381;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,19:132:99:458,0,4765:63,50,8,11
chr1	12854105	.	A	G	1083.36	PASS	AC=1;AF=0.5;AN=2;DP=6261;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,18:129:99:464,0,4602:62,49,7,11
chr1	12854428	.	C	T	2781.19	PASS	AC=1;AF=0.571;AN=2;DP=3785;FractionInformativeReads=1;set=variant-variant3-variant7-variant8-variant9-variant10-variant14-variant18-variant20-variant24-variant25-variant28-variant32-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,84:199:99:2094,0,2858:59,56,52,32
chr1	12854530	.	C	G	6594.25	PASS	AC=2;AF=0.878;AN=2;DP=7267;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5356,520,0:0,0,69,105
chr1	12854544	.	T	C	2209.89	PASS	AC=1;AF=0.659;AN=2;DP=3265;set=variant-variant3-variant7-variant8-variant9-variant10-variant14-variant18-variant20-filterInvariant21-variant24-variant25-variant28-variant32-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,82:160:99:2004,0,1986:30,48,33,49
chr1	12854842	.	G	C	60.54	PASS	AC=1;AF=0.692;AN=2;DP=260;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:66:66,0,116:3,0,2,0
chr1	12854930	.	T	G	262.77	PASS	AC=1;AF=0.556;AN=2;DP=239;FractionInformativeReads=1;set=variant3-variant7-variant8-variant9-variant10-filterInvariant14-variant18-variant24-variant25-variant28-variant32-variant33-variant34-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:55:188,0,55:2,0,4,3
chr1	12855835	.	C	G	4813.73	PASS	AC=2;AF=1;AN=2;DP=7367;FS=0;MQRankSum=-0.498;ReadPosRankSum=1.429;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,181:181:99:8059,548,0:0,0,74,107
chr1	12855845	.	G	C	4750.21	PASS	AC=2;AF=1;AN=2;DP=7147;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:7951,542,0:0,0,72,103
chr1	12855878	.	A	C	557.01	PASS	AC=1;AF=0.5;AN=2;DP=2823;FractionInformativeReads=1;set=variant-variant3-variant7-variant8-variant9-variant10-variant14-variant18-variant20-variant21-variant24-variant25-variant28-variant32-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,59:140:99:1604,0,2236:34,47,17,42
chr1	12856010	.	C	G	495.81	PASS	AC=1;AF=0.5;AN=2;DP=6137;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-variant12-filterInvariant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:69,41:110:99:693,0,1666:27,42,21,20
chr1	12856079	.	C	T	135.54	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2116;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:56,11:67:96:96,0,1329:20,36,4,7
chr1	12887054	.	T	C,G	121.14	PASS	AC=1,0;AF=0.387,0.226;AN=2;DP=1337;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:48:99:15,3,21,9
chr1	12887549	.	T	C	8709.88	PASS	AC=2;AF=0.89;AN=2;DP=14300;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,378:378:99:11804,1133,0:0,0,189,189
chr1	12888389	.	A	C	221.82	PASS	AC=2;AF=0.794;AN=2;DP=405;set=variant-variant3-variant4-variant5-filterInvariant6-variant7-variant9-variant10-variant11-variant13-variant14-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-filterInvariant30-variant31-variant32-variant33-filterInvariant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:506,42,0:0,0,14,0
chr1	12888601	.	G	GC	982.02	PASS	AC=2;AF=0.943;AN=2;DP=2638;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2200,198,0:0,0,26,40
chr1	12888629	.	A	G	197.44	PASS	AC=1;AF=0.5;AN=2;DP=1809;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,10:70:99:180,0,1660:21,39,9,1
chr1	12898472	.	C	T	2121.05	PASS	AC=2;AF=0.932;AN=2;DP=4750;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3764,338,0:0,0,69,44
chr1	12898654	.	A	G	1164.51	PASS	AC=1;AF=0.667;AN=2;DP=5381;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,75:166:99:1765,0,2159:35,56,35,40
chr1	12898673	.	G	T	3211.34	PASS	AC=2;AF=0.85;AN=2;DP=4654;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4520,437,0:0,0,56,90
chr1	12898775	.	C	G	429.9	PASS	AC=1;AF=0.719;AN=2;DP=1121;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,19:54:99:690,0,1595:11,24,8,11
chr1	12898778	.	T	A	429.9	PASS	AC=1;AF=0.719;AN=2;DP=1095;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,19:54:99:690,0,1595:12,23,8,11
chr1	12898810	.	T	C	219.41	PASS	AC=1;AF=0.771;AN=2;DP=455;set=variant-variant2-filterInvariant3-filterInvariant4-variant7-variant8-filterInvariant9-filterInvariant10-variant12-filterInvariant14-variant15-filterInvariant22-variant24-filterInvariant25-variant27-variant32-variant34-variant36-variant37-variant38-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:29,16:45:99:300,0,687:10,19,7,9
chr1	12898833	.	G	C	231.03	PASS	AC=1;AF=0.694;AN=2;DP=364;FractionInformativeReads=1;set=variant2-variant3-variant6-variant7-filterInvariant9-variant12-variant15-variant21-filterInvariant22-variant23-variant28-variant29-variant33-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,14:37:99:250,0,579:8,15,7,7
chr1	12907282	.	G	C	2238.04	PASS	AC=1;AF=0.5;AN=2;DP=5163;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:77,55:132:99:2109,0,5313:49,28,38,17
chr1	12907284	.	T	C	2259.66	PASS	AC=1;AF=0.5;AN=2;DP=5276;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:80,56:136:99:2106,0,5347:50,30,39,17
chr1	12907285	.	G	C	2259.66	PASS	AC=1;AF=0.5;AN=2;DP=5307;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:80,56:136:99:2106,0,5347:50,30,39,17
chr1	12907313	.	G	A	31.53	PASS	AC=1;AF=0.5;AN=2;DP=1047;set=filterInvariant3-variant9-variant22-filterInvariant24-filterInvariant31-filterInvariant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:134,28:162:99:240,0,6270:76,58,17,11
chr1	12907316	.	T	C	1544	PASS	AC=1;AF=0.5;AN=2;DP=6705;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:103,66:169:99:1783,0,2687:61,42,35,31
chr1	12907350	.	C	T	2202.88	PASS	AC=1;AF=0.5;AN=2;DP=7839;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:128,56:184:99:1948,0,5251:72,56,23,33
chr1	12907351	.	A	G	2244.87	PASS	AC=1;AF=0.5;AN=2;DP=7873;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:131,56:187:99:1948,0,5251:74,57,23,33
chr1	12907370	.	A	T	1651.73	PASS	AC=1;AF=0.5;AN=2;DP=8362;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,48:208:99:1417,0,6532:84,76,18,30
chr1	12907379	.	T	C	1605.19	PASS	AC=1;AF=0.5;AN=2;DP=8464;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:162,41:203:99:1238,0,6853:83,79,13,28
chr1	12907380	.	C	A	1599.17	PASS	AC=1;AF=0.5;AN=2;DP=8458;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,40:203:99:1252,0,6915:83,80,12,28
chr1	12907385	.	G	A	1160.96	PASS	AC=1;AF=0.5;AN=2;DP=8540;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:165,39:204:99:1222,0,6760:86,79,11,28
chr1	12907400	.	G	A	920.56	PASS	AC=1;AF=0.5;AN=2;DP=8841;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-filterInvariant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:177,32:209:99:764,0,7269:86,91,8,24
chr1	12907408	.	T	A	876.23	PASS	AC=1;AF=0.5;AN=2;DP=9037;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-variant27-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:178,33:211:99:815,0,7257:86,92,8,25
chr1	12907438	.	A	G	965.87	PASS	AC=1;AF=0.5;AN=2;DP=9198;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:182,30:212:99:632,0,7481:82,100,6,24
chr1	12907446	.	C	T	924.14	PASS	AC=1;AF=0.5;AN=2;DP=8631;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-variant26-variant27-variant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:179,26:205:99:628,0,7527:80,99,5,21
chr1	12907450	.	T	C	854.73	PASS	AC=1;AF=0.5;AN=2;DP=8225;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-variant26-variant27-variant29-filterInvariant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:174,26:200:99:643,0,7348:78,96,5,21
chr1	12907457	.	A	G	869.79	PASS	AC=1;AF=0.5;AN=2;DP=8199;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:168,25:193:99:571,0,7186:76,92,5,20
chr1	12907458	.	T	A	869.79	PASS	AC=1;AF=0.5;AN=2;DP=8147;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant29-variant30-filterInvariant31-variant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:166,24:190:99:574,0,7144:75,91,5,19
chr1	12907465	.	A	G	701.84	PASS	AC=1;AF=0.5;AN=2;DP=7841;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:161,22:183:99:475,0,6775:74,87,5,17
chr1	12907469	.	C	G	620.87	PASS	AC=1;AF=0.5;AN=2;DP=7529;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-variant37-variant38-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:159,22:181:99:445,0,6602:73,86,5,17
chr1	12907483	.	T	A	363.88	PASS	AC=1;AF=0.5;AN=2;DP=6256;FractionInformativeReads=1;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant25-variant26-filterInvariant27-variant29-filterInvariant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:149,17:166:99:153,0,4246:67,82,4,13
chr1	12907495	.	T	C	501.08	PASS	AC=1;AF=0.5;AN=2;DP=5918;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-variant26-filterInvariant27-variant29-filterInvariant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:136,16:152:99:256,0,5715:61,75,4,12
chr1	12907498	.	C	T	459.09	PASS	AC=1;AF=0.5;AN=2;DP=5811;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-variant26-filterInvariant27-variant29-filterInvariant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:137,16:153:99:253,0,5757:63,74,4,12
chr1	12907507	.	C	T	399.17	PASS	AC=1;AF=0.5;AN=2;DP=5737;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant26-filterInvariant27-variant29-variant30-filterInvariant32-variant33-variant34-variant35-variant37-variant38-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:122,16:138:99:284,0,5369:56,66,4,12
chr1	12907508	.	T	C	399.17	PASS	AC=1;AF=0.5;AN=2;DP=5666;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant26-variant27-variant29-variant30-filterInvariant32-variant33-variant34-variant35-variant37-variant38-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:123,16:139:99:284,0,5369:57,66,4,12
chr1	12907513	.	T	C	411.21	PASS	AC=1;AF=0.5;AN=2;DP=5027;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant26-variant27-variant29-variant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:118,16:134:99:305,0,5075:52,66,4,12
chr1	12907518	.	T	A	489.32	PASS	AC=1;AF=0.5;AN=2;DP=4806;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-variant26-variant27-variant29-variant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:110,16:126:99:332,0,4688:50,60,4,12
chr1	12907519	.	C	A	495.34	PASS	AC=1;AF=0.5;AN=2;DP=4895;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant23-variant26-variant27-variant29-variant30-filterInvariant32-filterInvariant33-variant35-variant37-variant38-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:110,16:126:99:335,0,4646:50,60,4,12
chr1	12907777	.	T	C	1518.56	PASS	AC=1;AF=0.5;AN=2;DP=11165;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-filterInvariant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:211,63:274:99:2136,0,8467:102,109,54,9
chr1	12907781	.	T	C	1677.44	PASS	AC=1;AF=0.5;AN=2;DP=11263;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:203,69:272:99:2436,0,8484:97,106,60,9
chr1	12907798	.	A	C	2285.86	PASS	AC=1;AF=0.5;AN=2;DP=11893;set=filterInvariant-variant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:191,95:286:99:3606,0,5315:88,103,78,17
chr1	12907800	.	A	G	108.41	PASS	AC=1;AF=0.5;AN=2;DP=2234;FractionInformativeReads=1;set=filterInvariant-filterInvariant7-filterInvariant14-variant29-filterInvariant33-filterInvariant40-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:262,30:292:99:174,0,10555:148,114,25,5
chr1	12907802	.	C	T	2446.31	PASS	AC=1;AF=0.5;AN=2;DP=12057;set=filterInvariant-variant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,99:289:99:3603,0,7887:87,103,83,16
chr1	12907803	.	C	T	2446.31	PASS	AC=1;AF=0.5;AN=2;DP=12131;set=filterInvariant-variant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:189,100:289:99:3609,0,7803:87,102,84,16
chr1	12907837	.	C	T	4253.12	PASS	AC=1;AF=0.5;AN=2;DP=15041;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:159,174:333:99:4686,0,4542:83,76,128,46
chr1	12907885	.	T	C	4558.15	PASS	AC=1;AF=0.5;AN=2;DP=21324;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:300,208:508:99:5188,0,7844:191,109,117,91
chr1	12908236	.	G	T	2708.3	PASS	AC=1;AF=0.5;AN=2;DP=8491;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:120,83:203:99:2828,0,5171:39,81,20,63
chr1	12908243	.	A	G	2396.39	PASS	AC=1;AF=0.5;AN=2;DP=7338;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,64:179:99:2480,0,5121:35,80,14,50
chr1	12908278	.	C	A	347.04	PASS	AC=1;AF=0.5;AN=2;DP=3274;set=variant-variant3-variant4-variant5-variant6-filterInvariant7-variant10-filterInvariant11-variant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-variant30-variant31-filterInvariant32-variant33-variant34-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:92,20:112:99:376,0,2777:16,76,3,17
chr1	12918622	.	A	G	194.29	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=2.331;FractionInformativeReads=1;MQ=60;MQRankSum=0.212;QD=12.14;ReadPosRankSum=-1.799;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:223,0,199:6,1,6,3
chr1	12919422	.	T	C	184.57	PASS	AC=1;AF=0.5;AN=2;DP=1640;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:447,0,758:13,6,10,2
chr1	12919423	.	G	A	184.57	PASS	AC=1;AF=0.5;AN=2;DP=1636;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:447,0,758:13,6,10,2
chr1	12919459	.	G	T	50.71	PASS	AC=1;AF=0.5;AN=2;DP=1867;set=filterInvariant-variant3-variant4-variant5-variant7-variant8-variant9-filterInvariant14-variant16-filterInvariant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant31-filterInvariant33-variant34-variant35-variant37-variant38-variant39-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,8:53:88:88,0,1290:31,14,5,3
chr1	12919482	.	G	C	54.06	PASS	AC=1;AF=0.5;AN=2;DP=2985;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-filterInvariant8-filterInvariant9-variant11-filterInvariant13-filterInvariant14-variant15-variant18-filterInvariant19-variant20-variant21-filterInvariant22-variant24-variant25-variant26-variant27-variant29-filterInvariant30-filterInvariant31-variant32-variant33-variant34-filterInvariant35-filterInvariant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,13:65:99:245,0,1421:34,18,8,5
chr1	12919505	.	G	T	46.12	PASS	AC=1;AF=0.5;AN=2;DP=3373;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-filterInvariant8-variant9-variant11-variant13-filterInvariant14-variant15-variant18-filterInvariant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-filterInvariant31-variant32-variant33-variant34-filterInvariant35-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,11:72:99:278,0,2631:41,20,6,5
chr1	12919506	.	A	T	43.12	PASS	AC=1;AF=0.5;AN=2;DP=3388;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-filterInvariant8-variant9-variant11-variant13-filterInvariant14-variant15-variant18-filterInvariant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-filterInvariant31-variant32-variant33-variant34-filterInvariant35-filterInvariant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,11:72:99:272,0,2674:41,20,6,5
chr1	12919511	.	C	T,A	37.11	PASS	AC=1,0;AF=0.457,0.057;AN=2;DP=3589;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant13-filterInvariant14-variant15-variant18-filterInvariant19-variant20-variant21-variant24-variant25-filterInvariant26-variant27-variant29-variant30-variant32-variant33-variant34-filterInvariant35-filterInvariant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:76:99:43,22,6,5
chr1	12921581	.	C	T	297.56	PASS	AC=1;AF=0.5;AN=2;DP=138;FractionInformativeReads=1;set=variant3-variant7-variant9-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:472,0,412:6,12,3,15
chr1	12942289	.	C	A	1662.99	PASS	AC=1;AF=0.5;AN=2;DP=7068;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,56:200:99:862,0,4099:55,89,32,24
chr1	12942306	.	C	T	1711.38	PASS	AC=1;AF=0.5;AN=2;DP=6123;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,65:176:99:1087,0,2919:43,68,34,31
chr1	12942384	.	T	C	164.99	PASS	AC=1;AF=0.5;AN=2;DP=2412;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant20-filterInvariant21-filterInvariant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,20:79:99:390,0,1916:8,51,3,17
chr1	12942414	.	G	T	101.4	PASS	AC=1;AF=0.5;AN=2;DP=1677;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:30,17:47:99:400,0,1059:4,26,2,15
chr1	12942419	.	G	GT,GTT	49.23	PASS	AC=1,0;AF=0.484,0.016;AN=2;DP=1121;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant17-variant21-filterInvariant22-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:37:99:4,23,1,9
chr1	13001186	.	C	T	3619.63	PASS	AC=1;AF=0.58;AN=2;DP=8347;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,158:282:99:3878,0,3110:96,28,119,39
chr1	13001312	.	C	G	6578.48	PASS	AC=1;AF=0.557;AN=2;DP=21542;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:322,366:688:99:7734,0,7050:151,171,140,226
chr1	13001428	.	C	A	1430.99	PASS	AC=1;AF=0.545;AN=2;DP=2511;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-filterInvariant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:157,29:186:99:385,0,4241:52,105,0,29
chr1	13036587	.	C	T	2233.04	DRAGENHardSNP	AC=2;AF=0.716;AN=2;DP=6391;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:2,167:169:99:4052,470,0:1,1,83,84
chr1	13036654	.	C	T	630.29	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2150;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:89,42:131:99:686,0,1850:39,50,17,25
chr1	13052789	.	G	A	2658.26	PASS	AC=1;AF=0.524;AN=2;DP=9927;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,129:209:99:3071,0,1783:46,34,73,56
chr1	13052871	.	C	T	3063.1	PASS	AC=1;AF=0.524;AN=2;DP=12047;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,166:274:99:3744,0,2226:47,61,68,98
chr1	13052907	.	T	C	5232.75	PASS	AC=2;AF=0.636;AN=2;DP=10166;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,205:207:99:7927,574,0:1,1,72,133
chr1	13141561	.	C	T	86.58	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=540;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:80,21:101:99:243,0,1913:46,34,13,8
chr1	13141835	.	C	T	567.97	DRAGENHardSNP	AC=1;AF=0.733;AN=2;DP=1254;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:5,30:35:37:723,0,37:1,4,8,22
chr1	13182899	.	A	G	282.1	PASS	AC=1;AF=0.5;AN=2;DP=443;set=variant2-variant3-variant4-filterInvariant5-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant20-variant23-variant24-variant26-filterInvariant30-variant37-variant40-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:99:127,0,557:13,2,3,4
chr1	13183187	.	A	G	56.44	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1314;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:182,15:197:67:67,0,10592:80,102,12,3
chr1	13183188	.	T	A	62.46	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1306;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:182,14:196:70:70,0,10550:80,102,11,3
chr1	13183195	.	A	G	50.11	PASS	AC=1;AF=0.5;AN=2;DP=2294;FractionInformativeReads=1;set=filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant19-filterInvariant25-filterInvariant27-filterInvariant29-variant37-filterInvariant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:174,15:189:99:100,0,10130:76,98,12,3
chr1	13183199	.	C	G	62.15	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2739;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:168,14:182:70:70,0,9945:74,94,12,2
chr1	13183225	.	T	C	395.99	PASS	AC=1;AF=0.5;AN=2;DP=6346;set=variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-variant21-variant23-variant25-filterInvariant26-variant27-variant29-filterInvariant30-filterInvariant33-filterInvariant35-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:141,22:163:99:579,0,8196:52,89,15,7
chr1	13183228	.	C	T	428.95	PASS	AC=1;AF=0.5;AN=2;DP=6429;set=variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-variant21-variant23-filterInvariant24-variant25-filterInvariant26-variant27-variant29-filterInvariant30-filterInvariant33-variant35-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:137,24:161:99:576,0,8238:49,88,17,7
chr1	13183237	.	C	T	659.97	PASS	AC=1;AF=0.5;AN=2;DP=6293;FractionInformativeReads=1;set=variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant23-filterInvariant24-variant25-filterInvariant26-variant27-variant29-variant30-variant33-filterInvariant34-variant35-filterInvariant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,24:144:99:712,0,7420:42,78,16,8
chr1	13183238	.	T	C	662.98	PASS	AC=1;AF=0.5;AN=2;DP=6250;FractionInformativeReads=1;set=variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-filterInvariant24-variant25-filterInvariant26-variant27-variant29-variant30-variant33-filterInvariant34-variant35-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,25:144:99:721,0,7260:42,77,16,9
chr1	13183243	.	T	C	765.02	PASS	AC=1;AF=0.5;AN=2;DP=6019;FractionInformativeReads=1;set=variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant33-filterInvariant34-variant35-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,24:138:99:746,0,6745:42,72,15,9
chr1	13183248	.	T	A	825.08	PASS	AC=1;AF=0.5;AN=2;DP=5844;FractionInformativeReads=1;set=variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-filterInvariant27-variant29-variant30-variant33-filterInvariant34-variant35-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,25:134:99:762,0,6601:40,69,16,9
chr1	13183249	.	C	A	828.09	PASS	AC=1;AF=0.5;AN=2;DP=5802;set=variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant23-variant24-variant25-variant26-filterInvariant27-variant29-variant30-variant33-filterInvariant34-variant35-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,27:134:99:768,0,6460:39,68,17,10
chr1	13183439	.	T	C	9192.24	PASS	AC=1;AF=0.784;AN=2;DP=18306;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:88,301:389:99:7764,0,1387:48,40,159,142
chr1	13183511	.	T	C	5032.46	PASS	AC=1;AF=0.5;AN=2;DP=15315;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:185,155:340:99:5524,0,7516:96,89,55,100
chr1	13183528	.	A	C	4481.77	PASS	AC=1;AF=0.5;AN=2;DP=13615;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:189,119:308:99:4561,0,8091:102,87,40,79
chr1	13183530	.	A	G	272.61	PASS	AC=1;AF=0.5;AN=2;DP=4488;set=filterInvariant-filterInvariant6-filterInvariant7-filterInvariant11-variant14-filterInvariant16-filterInvariant18-filterInvariant21-filterInvariant22-variant23-variant29-filterInvariant33-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:264,33:297:84:84,0,10636:122,142,11,22
chr1	13183532	.	C	T	4088.45	PASS	AC=1;AF=0.5;AN=2;DP=13070;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:184,104:288:99:4092,0,7945:97,87,29,75
chr1	13183533	.	C	T	3845.54	PASS	AC=1;AF=0.5;AN=2;DP=12987;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:181,102:283:99:4056,0,7865:97,84,28,74
chr1	13183567	.	C	T	1419.8	PASS	AC=1;AF=0.5;AN=2;DP=9944;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-variant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:178,49:227:99:1343,0,7493:96,82,7,42
chr1	13183573	.	G	T	1352.33	PASS	AC=1;AF=0.5;AN=2;DP=9611;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-variant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:178,35:213:99:1160,0,7456:100,78,0,35
chr1	13183780	.	A	C	445.71	PASS	AC=1;AF=0.5;AN=2;DP=754;set=variant-filterInvariant6-filterInvariant29-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:145,16:161:68:68,0,4166:77,68,0,16
chr1	13183966	.	G	T	242.88	PASS	AC=1;AF=0.5;AN=2;DP=2725;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant10-filterInvariant11-filterInvariant13-variant14-variant17-variant18-variant20-variant21-variant23-variant24-filterInvariant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-variant38-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:75,16:91:99:108,0,2351:18,57,7,9
chr1	13219149	.	G	A	1550.94	PASS	AC=1;AF=0.5;AN=2;DP=13062;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant32-filterInvariant33-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:216,107:323:99:2142,0,5419:68,148,30,77
chr1	13219649	.	G	C	573.39	PASS	AC=1;AF=0.5;AN=2;DP=572;set=variant3-variant9-variant16-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,29:107:99:691,0,2176:23,55,5,24
chr1	13379194	.	G	A	137.21	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=28;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:361,36,0:0,0,10,2
chr1	13379281	.	G	A	302.74	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=86;FS=0;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:799,96,0:0,0,16,16
chr1	13379394	.	T	C	121.09	DRAGENHardSNP	AC=2;AF=0.833;AN=2;DP=124;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:100,9,0:0,0,0,3
chr1	13413961	.	G	C	811.55	DRAGENHardSNP	AC=2;AF=0.66;AN=2;DP=877;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:236,24,0:0,0,7,1
chr1	13414059	.	C	T	3000.82	DRAGENHardSNP	AC=1;AF=0.56;AN=2;DP=4085;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:12,54:66:99:1153,0,99:6,6,28,26
chr1	13448180	.	A	G	496.53	DRAGENHardSNP	AC=2;AF=0.86;AN=2;DP=514;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:57:855,57,0:0,0,17,0
chr1	13448184	.	C	T	652.76	DRAGENHardSNP	AC=2;AF=0.86;AN=2;DP=632;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:60:887,60,0:0,0,18,1
chr1	13448185	.	G	C	229.49	DRAGENHardSNP	AC=1;AF=0.703;AN=2;DP=607;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:99:399,0,111:5,1,14,1
chr1	13448199	.	C	T	856.08	DRAGENHardSNP	AC=2;AF=0.966;AN=2;DP=1358;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:987,105,0:0,0,27,8
chr1	13448283	.	A	G	2587.19	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=5361;FS=0;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3041,368,0:0,0,62,61
chr1	13448351	.	T	C	1765.7	DRAGENHardSNP	AC=2;AF=0.943;AN=2;DP=3647;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2111,239,0:0,0,31,49
chr1	13634723	.	A	G	139.25	DRAGENHardSNP	AC=2;AF=0.688;AN=2;DP=104;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:521,60,0:0,0,13,7
chr1	13695787	.	C	G	1574.97	DRAGENHardSNP	AC=2;AF=0.989;AN=2;DP=2527;FS=0;MQRankSum=-2.1;ReadPosRankSum=-0.853;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1405,147,0:0,0,37,12
chr1	13695816	.	G	A	2318.89	DRAGENHardSNP	AC=2;AF=0.989;AN=2;DP=4360;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2328,266,0:0,0,55,34
chr1	13695974	.	T	C	960.66	DRAGENHardSNP	AC=2;AF=0.989;AN=2;DP=2019;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:943,102,0:0,0,8,26
chr1	13801621	.	A	C	457.27	PASS	AC=1;AF=0.533;AN=2;DP=460;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant10-variant13-variant16-variant22-variant26-variant27-variant34-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:301,0,387:6,7,7,6
chr1	13802224	.	G	A	1002.54	PASS	AC=1;AF=0.558;AN=2;DP=2934;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant16-variant17-variant22-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,60:120:99:1465,0,1497:29,31,28,32
chr1	13802325	.	T	C	1027.84	PASS	AC=1;AF=0.565;AN=2;DP=2605;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant20-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,49:81:99:1310,0,929:15,17,22,27
chr1	13839431	.	T	C	272.18	PASS	AC=1;AF=0.5;AN=2;DP=1632;set=variant2-variant4-filterInvariant7-variant8-filterInvariant11-filterInvariant13-filterInvariant14-variant20-filterInvariant21-filterInvariant22-filterInvariant25-variant27-filterInvariant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,19:93:99:104,0,1349:34,40,17,2
chr1	13909912	.	A	C	1253.61	PASS	AC=2;AF=0.717;AN=2;DP=2740;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant28-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2353,272,0:0,0,47,44
chr1	13910417	.	C	T	2735.02	PASS	AC=1;AF=0.643;AN=2;DP=5391;set=variant-variant7-variant8-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant24-variant25-variant30-variant32-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:130,135:265:99:3195,0,3292:70,60,74,61
chr1	13933855	.	A	G	787.57	PASS	AC=2;AF=0.594;AN=2;DP=1064;FractionInformativeReads=1;MQ=60;set=variant6-variant12-variant14-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,82:83:99:2648,237,0:0,1,22,60
chr1	13936822	.	G	T	849.31	PASS	AC=2;AF=0.686;AN=2;DP=3171;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2228,210,0:0,0,44,26
chr1	13937089	.	G	T	1047.97	PASS	AC=2;AF=0.686;AN=2;DP=3138;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3292,288,0:0,0,39,57
chr1	13937281	.	T	C	229.81	PASS	AC=2;AF=0.763;AN=2;DP=619;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:452,36,0:0,0,3,9
chr1	13940864	.	C	G	5238.77	PASS	AC=2;AF=0.943;AN=2;DP=8146;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:5197,504,0:0,0,85,83
chr1	13942731	.	T	C	4104.16	PASS	AC=2;AF=0.6;AN=2;DP=5135;MQ=60;set=variant6-variant12-variant14-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant32-variant33-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,282:282:99:8352,844,0:0,0,138,144
chr1	13942890	.	TG	T	2087.47	PASS	AC=2;AF=0.6;AN=2;DP=3044;MQ=60;set=variant6-variant12-variant14-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant32-variant33-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:7524,613,0:0,0,104,100
chr1	13943653	.	AT	A,ATT	245.53	PASS	AC=2,0;AF=0.733,0.012;AN=2;DP=2028;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:36:9:2,2,6,26
chr1	13943724	.	T	C	449.86	PASS	AC=2;AF=0.6;AN=2;DP=432;MQ=60;set=variant6-variant12-variant14-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant32-variant33-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1333,105,0:0,0,13,22
chr1	13943899	.	G	T	349.15	PASS	AC=1;AF=0.5;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant20-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:540,0,406:4,12,11,12
chr1	13944236	.	C	CTT	1897.62	PASS	AC=2;AF=0.977;AN=2;DP=2092;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1991,135,0:0,0,24,20
chr1	13944294	.	CT	C	1851.87	PASS	AC=2;AF=0.6;AN=2;DP=971;MQ=60;set=variant6-variant12-variant14-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant32-variant33-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2737,184,0:0,0,31,30
chr1	13944298	.	CTT	C	1851.91	PASS	AC=2;AF=0.6;AN=2;DP=979;FractionInformativeReads=1;MQ=60;set=variant6-variant12-variant14-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant32-variant33-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2737,184,0:0,0,31,30
chr1	14031732	.	G	C	3749.47	PASS	AC=2;AF=0.821;AN=2;DP=4024;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2231,204,0:0,0,41,27
chr1	14031756	.	A	C	4514.47	PASS	AC=2;AF=0.805;AN=2;DP=4949;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2680,252,0:0,0,48,36
chr1	14031814	.	TC	T	2219.24	PASS	AC=1;AF=0.538;AN=2;DP=4057;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant22-variant26-variant28-variant29-variant30-variant31-variant33-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,60:126:99:1984,0,2232:36,30,31,29
chr1	14109408	.	CTT	CT,CTTT,C	206.22	PASS	AC=1,0,0;AF=0.459,0.027,0.014;AN=2;DP=2204;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-filterInvariant8-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant20-filterInvariant21-variant22-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:29:99:9,12,1,7
chr1	14143003	.	A	G	1398.41	PASS	AC=2;AF=0.857;AN=2;DP=4996;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3597,345,0:0,0,59,56
chr1	14149505	.	C	A	338.05	PASS	AC=2;AF=0.829;AN=2;DP=907;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1040,96,0:0,0,23,9
chr1	14149601	.	C	T	2646.16	PASS	AC=2;AF=0.829;AN=2;DP=4292;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3802,357,0:0,0,76,43
chr1	14149622	.	T	C	3249.12	PASS	AC=2;AF=0.829;AN=2;DP=5297;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4523,425,0:0,0,87,55
chr1	14149844	.	T	A	3251.91	PASS	AC=2;AF=0.829;AN=2;DP=4396;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3733,348,0:0,0,58,59
chr1	14150032	.	C	T	2486.2	PASS	AC=2;AF=0.821;AN=2;DP=3238;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2687,254,0:0,0,39,47
chr1	14150116	.	C	T	2186.87	PASS	AC=2;AF=0.829;AN=2;DP=2927;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2748,258,0:0,0,47,39
chr1	14150505	.	T	C	1064.85	PASS	AC=2;AF=0.829;AN=2;DP=1732;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1636,140,0:0,0,25,22
chr1	14150709	.	C	T	4528.28	PASS	AC=2;AF=0.866;AN=2;DP=3772;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:4537,310,0:0,0,64,36
chr1	14150714	.	G	A	4589.4	PASS	AC=2;AF=0.866;AN=2;DP=3864;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:4638,316,0:0,0,68,36
chr1	14150740	.	G	T	4073.98	PASS	AC=2;AF=0.866;AN=2;DP=4782;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,122:123:99:4121,357,0:1,0,85,37
chr1	14150992	.	T	C	4915.78	PASS	AC=2;AF=0.866;AN=2;DP=6177;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:5001,451,0:0,0,52,98
chr1	14219038	.	T	C	747.07	PASS	AC=2;AF=0.929;AN=2;DP=848;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:936,84,0:0,0,20,8
chr1	14219864	.	C	A	804.2	PASS	AC=2;AF=0.917;AN=2;DP=1808;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,40:41:99:1211,112,0:0,1,26,14
chr1	14925105	.	T	G	443.87	PASS	AC=2;AF=0.813;AN=2;DP=749;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:604,63,0:0,0,12,9
chr1	15256271	.	C	T	139.6	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=1.638;FractionInformativeReads=1;MQ=60;MQRankSum=-1.033;QD=4.99;ReadPosRankSum=-0.344;SOR=0.399;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,9:28:99:168,0,557:14,5,6,3
chr1	15272745	.	T	C	386.9	PASS	AC=2;AF=0.7;AN=2;DP=164;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant12-variant16-variant23-variant25-variant31-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:553,51,0:0,0,5,12
chr1	15370330	.	G	A	246.21	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.761;QD=18.94;ReadPosRankSum=-2.113;SOR=0.627;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:89:274,0,89:2,1,6,4
chr1	15370733	.	C	A	124.46	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.922;QD=15.56;ReadPosRankSum=-0.421;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:153,0,254:1,3,1,3
chr1	15382607	.	G	A	1642.34	PASS	AC=1;AF=0.5;AN=2;DP=662;MQ=60;set=variant5-variant10-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,92:146:99:2151,0,1268:29,25,49,43
chr1	15386628	.	T	C	1813.83	PASS	AC=1;AF=0.5;AN=2;DP=1936;MQ=60;set=variant-variant2-variant5-variant10-variant14-variant15-variant16-variant17-variant26-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,49:133:99:1173,0,2014:49,35,28,21
chr1	15390145	.	A	G	666.88	PASS	AC=2;AF=0.571;AN=2;DP=1461;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant13-variant14-variant15-variant16-variant17-variant20-variant26-variant28-variant29-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2353,165,0:0,0,21,34
chr1	15390178	.	C	T	583.55	PASS	AC=2;AF=0.571;AN=2;DP=1097;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant13-variant14-variant15-variant16-variant17-variant20-variant26-variant28-variant29-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:2037,138,0:0,0,18,28
chr1	15390211	.	G	A	130.7	PASS	AC=2;AF=0.571;AN=2;DP=711;set=variant-variant2-variant4-variant5-variant10-variant13-variant14-variant15-variant16-variant17-variant20-variant26-variant28-variant29-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:90:1350,90,0:0,0,9,19
chr1	15390257	.	G	A	395.02	PASS	AC=2;AF=1;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=58.24;MQRankSum=1.393;QD=31.54;ReadPosRankSum=0.696;SOR=1.802;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:1,9:10:6:423,6,0:0,1,1,8
chr1	15393534	.	C	T	824.21	PASS	AC=1;AF=0.5;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,40:92:99:819,0,1170:25,27,20,20
chr1	15427852	.	A	AT	224.98	PASS	AC=1;AF=0.5;AN=2;DP=110;FractionInformativeReads=1;MQ=60;set=variant15-variant17-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:341,0,408:9,7,8,6
chr1	15427934	.	C	T	467.66	PASS	AC=1;AF=0.667;AN=2;DP=2543;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,34:64:99:841,0,755:14,16,15,19
chr1	15428358	.	T	C	608.04	PASS	AC=2;AF=0.943;AN=2;DP=2827;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2087,192,0:0,0,18,46
chr1	15428508	.	C	T	184.18	PASS	AC=1;AF=0.556;AN=2;DP=343;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant35-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,148:1,4,0,2
chr1	15430031	.	A	T	961.33	PASS	AC=1;AF=0.5;AN=2;DP=446;FractionInformativeReads=1;MQ=60;set=variant12-variant19-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,42:110:99:1140,0,1777:28,40,14,28
chr1	15439083	.	A	AAGGTCTTTTTTTTCTTCTCCCAGCGGC	1950.63	PASS	AC=2;AF=0.684;AN=2;DP=3492;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1840,129,0:0,0,17,30
chr1	15441275	.	C	T	269.01	PASS	AC=1;AF=0.686;AN=2;DP=1235;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:643,0,746:10,17,14,11
chr1	15441494	.	G	A	652.82	PASS	AC=1;AF=0.686;AN=2;DP=2286;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,33:71:99:887,0,853:20,18,15,18
chr1	15441926	.	C	T	636.82	PASS	AC=1;AF=0.686;AN=2;DP=2981;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,32:84:99:766,0,1371:22,30,15,17
chr1	15442028	.	T	C	446.07	PASS	AC=1;AF=0.689;AN=2;DP=1967;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:527,0,731:10,13,7,14
chr1	15442051	.	C	T	331.34	PASS	AC=1;AF=0.5;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:531,0,635:10,13,6,12
chr1	15443368	.	A	G	1092.57	PASS	AC=2;AF=0.955;AN=2;DP=3302;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1876,174,0:0,0,28,30
chr1	15443426	.	C	T	1313.99	PASS	AC=1;AF=0.5;AN=2;DP=880;FractionInformativeReads=1;MQ=60;set=variant3-variant12-variant16-variant19-variant20-variant23-variant27-variant28-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:710,0,862:12,17,12,13
chr1	15443631	.	C	G	1306.17	PASS	AC=1;AF=0.5;AN=2;DP=1032;MQ=60;set=variant3-variant12-variant16-variant19-variant20-variant23-variant27-variant28-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,44:81:99:1086,0,933:23,14,24,20
chr1	15443770	.	A	G	613.59	PASS	AC=2;AF=0.955;AN=2;DP=3504;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3007,285,0:0,0,42,53
chr1	15443859	.	T	C	608.99	PASS	AC=1;AF=0.662;AN=2;DP=2542;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,25:75:99:698,0,1320:24,26,11,14
chr1	15444288	.	C	T	735.99	PASS	AC=1;AF=0.662;AN=2;DP=2332;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,35:70:99:850,0,836:17,18,18,17
chr1	15444487	.	G	A	338.02	PASS	AC=1;AF=0.662;AN=2;DP=1381;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:411,0,591:10,11,7,9
chr1	15444563	.	T	C	201.9	PASS	AC=1;AF=0.676;AN=2;DP=724;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:244,0,350:5,7,2,8
chr1	15444643	.	A	G	87.74	PASS	AC=1;AF=0.683;AN=2;DP=269;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,193:2,4,1,3
chr1	15479261	.	GGGC	G	647.55	PASS	AC=1;AF=0.621;AN=2;DP=968;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:780,0,780:8,12,8,12
chr1	15479265	.	G	GAA	647.55	PASS	AC=1;AF=0.621;AN=2;DP=945;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:780,0,780:8,11,8,12
chr1	15479283	.	G	A	422.34	PASS	AC=2;AF=0.869;AN=2;DP=1109;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1158,111,0:0,0,13,24
chr1	15480286	.	G	C	1140.39	PASS	AC=2;AF=0.869;AN=2;DP=6490;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:4398,475,0:0,0,82,77
chr1	15480405	.	T	C	319.5	PASS	AC=2;AF=0.989;AN=2;DP=2903;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1755,158,0:0,0,12,41
chr1	15480493	.	G	T	79.67	PASS	AC=2;AF=0.869;AN=2;DP=676;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:531,36,0:0,0,3,9
chr1	15480494	.	C	A	79.67	PASS	AC=2;AF=0.869;AN=2;DP=665;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:531,36,0:0,0,3,9
chr1	15490865	.	T	A	1124.93	PASS	AC=1;AF=0.529;AN=2;DP=1439;MQ=60;set=variant-variant3-variant6-variant9-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant28-variant31-variant32-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,27:78:99:729,0,1199:26,25,15,12
chr1	15490962	.	A	G	1117.76	PASS	AC=1;AF=0.618;AN=2;DP=1709;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant18-variant21-variant24-variant25-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,51:108:99:1225,0,1267:27,30,21,30
chr1	15495110	.	A	G	2491.7	PASS	AC=1;AF=0.625;AN=2;DP=3685;MQ=60;set=variant2-variant4-variant8-variant9-variant18-variant21-variant24-variant25-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:111,104:215:99:2592,0,2732:55,56,48,56
chr1	15497727	.	T	C	1650.65	PASS	AC=2;AF=0.989;AN=2;DP=7102;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,157:159:99:4732,425,0:1,1,89,68
chr1	15497844	.	T	A	1392.81	PASS	AC=2;AF=0.888;AN=2;DP=5227;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3948,381,0:0,0,52,75
chr1	15497954	.	A	G	346.81	PASS	AC=2;AF=0.897;AN=2;DP=987;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:86:1044,86,0:0,0,8,21
chr1	15541407	.	C	T	560.27	PASS	AC=1;AF=0.646;AN=2;DP=1376;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant12-variant13-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:864,0,1077:26,10,20,16
chr1	15541537	.	C	T	2883.29	PASS	AC=1;AF=0.955;AN=2;DP=4942;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:71,51:122:99:1343,0,1979:39,32,28,23
chr1	15546761	.	G	A	474.44	PASS	AC=1;AF=0.643;AN=2;DP=1494;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,28:63:99:732,0,1023:17,18,15,13
chr1	15546825	.	A	G	650.37	PASS	AC=1;AF=0.75;AN=2;DP=2191;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:698,0,1022:17,15,14,13
chr1	15546872	.	CAAA	CA,CAA,C	1341.68	PASS	AC=0,1,0;AF=0.341,0.466,0.011;AN=2;DP=3897;set=Intersection	GT:DP:GQ:SB	0/2:67:99:14,8,30,15
chr1	15599025	.	G	A	519.07	PASS	AC=1;AF=0.528;AN=2;DP=440;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant15-variant19-variant22-variant24-variant25-variant27-variant28-variant32-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:306,0,431:1,11,0,10
chr1	15650784	.	T	G	151.12	PASS	AC=1;AF=0.553;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant12-variant18-variant20-variant21-variant24-variant25-variant26-variant31-variant32-variant33-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,11:13:99:469,0,141:2,0,9,2
chr1	15650791	.	G	C	151.12	PASS	AC=1;AF=0.55;AN=2;DP=389;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant12-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant31-variant32-variant33-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,13:16:99:488,0,177:3,0,9,4
chr1	15651062	.	A	G	564.77	PASS	AC=1;AF=0.55;AN=2;DP=885;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant12-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant31-variant32-variant33-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:523,0,645:6,17,6,13
chr1	15653503	.	A	G	480.96	PASS	AC=1;AF=0.55;AN=2;DP=784;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant12-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant31-variant32-variant33-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,16:39:99:449,0,537:14,9,12,4
chr1	15653563	.	C	T	1045.55	PASS	AC=1;AF=0.525;AN=2;DP=1348;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant12-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant31-variant32-variant33-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,40:72:99:1142,0,923:17,15,22,18
chr1	15653872	.	G	A	370.25	PASS	AC=1;AF=0.525;AN=2;DP=400;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant12-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant31-variant32-variant33-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:374,0,296:1,8,2,10
chr1	15654737	.	C	CT	306.91	PASS	AC=1;AF=0.5;AN=2;DP=873;set=variant2-variant3-variant6-variant8-variant9-variant12-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant31-variant32-variant33-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,20:55:99:276,0,632:13,22,11,9
chr1	15668276	.	G	A	700.08	PASS	AC=1;AF=0.554;AN=2;DP=1736;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant18-variant20-variant21-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:973,0,875:23,18,24,17
chr1	15671483	.	G	A	303.2	PASS	AC=1;AF=0.633;AN=2;DP=932;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:357,0,463:11,6,11,4
chr1	15692510	.	G	T	493.29	PASS	AC=1;AF=0.583;AN=2;DP=220;FractionInformativeReads=1;MQ=60;set=variant10-variant19-variant20-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:352,0,694:5,18,4,11
chr1	15694137	.	G	A	146.94	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0;MQ=60;set=variant10-variant11-variant19-variant20-variant29-variant30-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:29:213,0,29:0,2,4,3
chr1	15701350	.	T	G	264.12	PASS	AC=1;AF=0.605;AN=2;DP=241;FractionInformativeReads=1;set=variant4-variant10-variant11-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant29-variant30-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:475,0,258:2,5,2,10
chr1	15701356	.	G	T,C	407.33	PASS	AC=1,1;AF=0.5,0.308;AN=2;DP=393;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:17:99:0,0,4,13
chr1	15701359	.	TG	T	187.58	PASS	AC=1;AF=0.607;AN=2;DP=160;set=variant10-variant11-variant16-variant17-variant20-variant24-variant25-variant26-variant30-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:188,0,297:1,6,2,5
chr1	15702130	.	A	G	720.55	PASS	AC=1;AF=0.583;AN=2;DP=397;FractionInformativeReads=1;MQ=60;set=variant10-variant20-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,44:72:99:1067,0,674:19,9,26,18
chr1	15702297	.	T	G	248	PASS	AC=1;AF=0.563;AN=2;DP=910;MQ=60;set=variant-variant4-variant10-variant11-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:583,0,618:6,15,9,13
chr1	15707984	.	G	A	673.39	PASS	AC=1;AF=0.571;AN=2;DP=803;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant11-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:824,0,555:12,15,6,21
chr1	15708540	.	A	G	1108.46	PASS	AC=1;AF=0.563;AN=2;DP=3591;MQ=60;set=variant-variant4-variant10-variant11-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,70:132:99:1705,0,1304:31,31,34,36
chr1	15708557	.	G	A	2128.8	PASS	AC=1;AF=0.5;AN=2;DP=458;MQ=60;set=variant7-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,62:128:99:1325,0,1612:33,33,29,33
chr1	15709555	.	A	G	1497.12	PASS	AC=1;AF=0.571;AN=2;DP=3105;MQ=60;set=variant4-variant10-variant11-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,76:130:99:1910,0,1372:36,18,45,31
chr1	15710113	.	C	G	150.19	PASS	AC=1;AF=0.583;AN=2;DP=163;FractionInformativeReads=1;MQ=60;set=variant4-variant16-variant17-variant20-variant22-variant23-variant25-variant26-variant29-variant30-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:198,0,156:4,0,4,1
chr1	15710411	.	G	C	320.37	PASS	AC=1;AF=0.563;AN=2;DP=680;MQ=60;set=variant-variant4-variant10-variant11-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:459,0,373:5,10,6,12
chr1	15714774	.	T	A	91.78	PASS	AC=1;AF=0.588;AN=2;DP=132;FS=0;MQ=60;set=variant-variant11-variant16-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:103,0,186:1,6,0,3
chr1	15714809	.	G	C	61.77	PASS	AC=1;AF=0.929;AN=2;DP=84;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant12-variant14-variant18-variant19-variant20-variant21-variant27-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:30:165,0,30:1,0,0,4
chr1	15714831	.	C	T,CCATT	691.48	PASS	AC=1,1;AF=0.5,0.316;AN=2;DP=224;FS=0;MQ=60;set=variant11-variant18-variant20-variant3-variant22-variant23-variant25-variant29-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant4-variant41-variant43-variant44	GT:DP:GQ:SB	1/2:14:99:0,0,12,2
chr1	15714842	.	G	C	161.19	PASS	AC=1;AF=0.571;AN=2;DP=445;MQ=60;set=variant4-variant10-variant11-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:453,0,382:9,4,11,3
chr1	15717838	.	A	G	141.11	PASS	AC=1;AF=0.563;AN=2;DP=699;MQ=60;set=variant-variant4-variant10-variant11-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:290,0,234:2,7,3,8
chr1	15723843	.	G	A	1997.9	PASS	AC=1;AF=0.594;AN=2;DP=3116;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,24:94:99:520,0,1904:47,23,18,6
chr1	15724003	.	A	G	2468.72	PASS	AC=1;AF=0.565;AN=2;DP=6098;MQ=60;set=variant4-variant10-variant11-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,124:258:99:3078,0,3087:70,64,59,65
chr1	15724033	.	A	G	4396.34	PASS	AC=2;AF=0.786;AN=2;DP=11420;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,245:246:99:7350,697,0:1,0,113,132
chr1	15754484	.	T	C	2665.99	PASS	AC=2;AF=0.881;AN=2;DP=3790;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2248,212,0:0,0,45,26
chr1	15755676	.	G	A	1399.45	PASS	AC=1;AF=0.553;AN=2;DP=1838;MQ=60;set=variant4-variant6-variant8-variant11-variant17-variant19-variant21-variant22-variant24-variant25-variant28-variant32-variant33-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,38:72:99:1058,0,856:18,16,23,15
chr1	15769139	.	G	A	734.08	PASS	AC=1;AF=0.5;AN=2;DP=553;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant16-variant28-variant32-variant34-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:964,0,596:8,16,6,24
chr1	15769876	.	G	GC	1003.81	PASS	AC=2;AF=1;AN=2;DP=2512;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2120,180,0:0,0,35,25
chr1	15770101	.	C	A	1601.57	PASS	AC=1;AF=0.5;AN=2;DP=2037;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant12-variant16-variant17-variant19-variant21-variant24-variant32-variant33-variant34-variant35-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,64:143:99:1408,0,2179:36,43,26,38
chr1	15772057	.	G	T	823.41	PASS	AC=1;AF=0.587;AN=2;DP=1629;MQ=60;set=variant2-variant4-variant8-variant12-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant29-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,36:64:99:845,0,807:20,8,27,9
chr1	15772933	.	A	G	185.87	PASS	AC=1;AF=0.591;AN=2;DP=584;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:99:322,0,102:3,0,8,1
chr1	15783096	.	GA	G	7299.48	PASS	AC=2;AF=1;AN=2;DP=6442;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:4,175:179:99:4329,428,0:2,2,97,78
chr1	15783117	.	C	CA	8800.99	PASS	AC=2;AF=1;AN=2;DP=7708;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,221:221:99:8258,668,0:0,0,123,98
chr1	15783553	.	T	TG	4080.93	PASS	AC=1;AF=0.5;AN=2;DP=3008;set=variant8-variant12-variant17-variant21-variant32-variant33-variant34-variant35-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,127:238:99:3994,0,3413:58,53,69,58
chr1	15788269	.	A	C	4645.38	PASS	AC=1;AF=0.841;AN=2;DP=8342;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,83:196:99:2033,0,2554:55,58,40,43
chr1	15788491	.	C	T	284.61	PASS	AC=1;AF=0.594;AN=2;DP=927;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant17-variant18-variant21-variant22-variant25-variant29-variant32-variant33-variant34-variant35-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,30:64:99:813,0,901:20,14,16,14
chr1	15788630	.	G	A	75.15	PASS	AC=1;AF=0.6;AN=2;DP=443;FractionInformativeReads=1;set=variant8-variant12-variant17-variant18-variant21-variant22-variant25-variant29-variant32-variant33-variant35-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:385,0,439:2,12,5,10
chr1	15788693	.	C	T	81.16	PASS	AC=1;AF=0.607;AN=2;DP=126;FractionInformativeReads=1;set=variant8-variant12-variant17-variant18-variant21-variant22-variant25-variant29-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:185,0,232:0,6,1,4
chr1	15789176	.	C	T	1354.16	PASS	AC=1;AF=0.594;AN=2;DP=1763;FractionInformativeReads=1;set=variant8-variant12-variant17-variant18-variant21-variant22-variant25-variant29-variant32-variant33-variant34-variant35-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,41:103:99:937,0,1904:48,14,25,16
chr1	15789297	.	A	C	9700.68	PASS	AC=1;AF=0.596;AN=2;DP=9760;set=variant2-variant3-variant4-variant8-variant10-variant12-variant13-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:189,196:385:99:4636,0,4230:95,94,106,90
chr1	15792426	.	C	G	51.45	PASS	AC=1;AF=0.579;AN=2;DP=243;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant17-variant19-variant26-variant27-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:491,0,250:7,2,12,2
chr1	15792800	.	G	A	428.3	PASS	AC=1;AF=0.583;AN=2;DP=513;set=variant8-variant10-variant11-variant12-variant17-variant19-variant26-variant27-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:430,0,320:2,9,4,10
chr1	15793913	.	G	A	4084.43	PASS	AC=1;AF=0.583;AN=2;DP=6361;MQ=60;set=variant8-variant10-variant11-variant12-variant17-variant19-variant26-variant27-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:149,185:334:99:4350,0,3596:84,65,93,92
chr1	15808198	.	C	T	277.61	PASS	AC=1;AF=0.529;AN=2;DP=399;FractionInformativeReads=1;set=variant8-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:304,0,479:4,10,1,8
chr1	15808702	.	C	T	1180.25	PASS	AC=1;AF=0.529;AN=2;DP=1380;MQ=60;set=variant8-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,36:78:99:1032,0,1256:33,9,26,10
chr1	15808767	.	G	A	2976.57	PASS	AC=1;AF=0.529;AN=2;DP=3998;MQ=60;set=variant8-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,103:212:99:2601,0,2745:62,47,63,40
chr1	15808872	.	G	A	3193.08	PASS	AC=1;AF=0.529;AN=2;DP=4849;set=variant8-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,139:267:99:3310,0,3023:53,75,57,82
chr1	15809876	.	G	A	3003.6	PASS	AC=1;AF=0.529;AN=2;DP=4478;set=variant8-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,116:242:99:2587,0,3180:65,61,64,52
chr1	15812432	.	A	G	1228.22	PASS	AC=2;AF=1;AN=2;DP=3887;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2563,249,0:0,0,52,31
chr1	15812665	.	G	T	623.14	PASS	AC=1;AF=0.579;AN=2;DP=710;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant15-variant17-variant19-variant26-variant27-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,19:30:99:545,0,352:1,10,6,13
chr1	15813751	.	C	T	5974.7	PASS	AC=2;AF=1;AN=2;DP=8587;FS=0;MQRankSum=1.31;ReadPosRankSum=0.76;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5267,493,0:0,0,109,56
chr1	15813969	.	A	C	3785.15	PASS	AC=2;AF=0.758;AN=2;DP=3238;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3702,315,0:0,0,26,79
chr1	15817334	.	G	A	53.54	PASS	AC=2;AF=0.917;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.026;ReadPosRankSum=-1.026;set=variant19-variant28-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:94,9,0:0,0,2,1
chr1	15817519	.	AG	A	137.76	PASS	AC=1;AF=0.654;AN=2;DP=163;FS=0;MQ=60;set=variant8-variant10-variant15-variant17-variant19-variant26-variant27-variant33-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:71:71,0,168:3,3,2,1
chr1	15818149	.	T	A	147.22	PASS	AC=1;AF=0.688;AN=2;DP=102;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant17-variant22-variant26-variant27-variant31-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:272,0,129:4,0,5,3
chr1	15819768	.	C	A	1160.36	PASS	AC=2;AF=0.758;AN=2;DP=1047;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1222,105,0:0,0,23,12
chr1	15819827	.	T	A	979.93	PASS	AC=1;AF=0.591;AN=2;DP=890;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,22:57:99:441,0,937:20,15,10,12
chr1	15820041	.	C	T	986.3	PASS	AC=1;AF=0.526;AN=2;DP=1290;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,36:68:99:858,0,822:17,15,18,18
chr1	15820307	.	A	AC	660.28	PASS	AC=1;AF=0.591;AN=2;DP=933;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,34:52:99:927,0,423:9,9,19,15
chr1	15820576	.	T	A	632.26	PASS	AC=2;AF=0.758;AN=2;DP=629;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:788,60,0:0,0,5,15
chr1	15820607	.	A	G	457.08	PASS	AC=2;AF=0.742;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:579,45,0:0,0,5,10
chr1	15820618	.	A	G	418.54	PASS	AC=2;AF=0.758;AN=2;DP=308;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:553,48,0:0,0,5,11
chr1	15822043	.	T	C	433.29	PASS	AC=1;AF=0.591;AN=2;DP=952;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,15:45:99:374,0,744:10,20,5,10
chr1	15822073	.	A	G	176.64	PASS	AC=1;AF=0.526;AN=2;DP=544;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:468,0,295:5,8,4,12
chr1	15832383	.	G	T	632.26	PASS	AC=2;AF=0.742;AN=2;DP=607;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:38:457,38,0:0,0,11,2
chr1	15832543	.	T	C	2538	PASS	AC=2;AF=0.742;AN=2;DP=3224;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,127:129:99:3419,335,0:1,1,59,68
chr1	15834297	.	G	A	631.63	PASS	AC=2;AF=0.742;AN=2;DP=858;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:625,60,0:0,0,11,9
chr1	15834360	.	A	G	599.98	PASS	AC=1;AF=0.531;AN=2;DP=908;MQ=60;set=variant8-variant10-variant11-variant12-variant15-variant19-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,31:45:99:786,0,284:9,5,17,14
chr1	15834491	.	G	A	1589.46	PASS	AC=2;AF=0.742;AN=2;DP=1529;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1207,123,0:0,0,17,24
chr1	15844615	.	A	G	2454.62	PASS	AC=2;AF=0.742;AN=2;DP=2329;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2837,270,0:0,0,57,33
chr1	15844926	.	C	T	3375.96	PASS	AC=2;AF=0.742;AN=2;DP=3196;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2861,258,0:0,0,34,52
chr1	15845022	.	C	CTGAG	2249.87	PASS	AC=2;AF=0.742;AN=2;DP=1658;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1734,117,0:0,0,10,29
chr1	15850483	.	G	A	106.77	PASS	AC=2;AF=0.841;AN=2;DP=174;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant16-variant19-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:136,12,0:0,0,2,2
chr1	15850553	.	C	CGGGGGCG,CGAGGGCG	187.73	PASS	AC=2,0;AF=0.769,0.019;AN=2;DP=295;MQ=60;set=variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:4:24:0,0,3,1
chr1	15850603	.	G	A	148.79	PASS	AC=1;AF=0.591;AN=2;DP=516;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:160,0,310:8,4,4,4
chr1	15850613	.	G	A	725.38	PASS	AC=2;AF=0.742;AN=2;DP=821;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:801,69,0:0,0,13,10
chr1	15850792	.	GC	G	331.63	PASS	AC=1;AF=0.595;AN=2;DP=295;MQ=60;set=variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:116,0,313:1,10,1,4
chr1	15850956	.	G	C	331.77	PASS	AC=2;AF=0.78;AN=2;DP=210;FS=0;FractionInformativeReads=1;set=variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,0,8
chr1	15850973	.	TC	T	313.29	PASS	AC=2;AF=0.762;AN=2;DP=157;FS=0;FractionInformativeReads=1;set=variant8-variant11-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant34-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,0,8
chr1	15851064	.	A	ATCCCCGCACTGACCTCACG	456.23	PASS	AC=2;AF=0.776;AN=2;DP=232;MQ=60;set=variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:47:699,47,0:0,0,5,6
chr1	15853276	.	T	C	960.31	PASS	AC=1;AF=0.526;AN=2;DP=1981;FractionInformativeReads=1;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,47:108:99:1174,0,1617:39,22,30,17
chr1	15853289	.	T	G	2671.28	PASS	AC=2;AF=0.742;AN=2;DP=3467;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3770,353,0:0,0,72,46
chr1	15853551	.	C	T	279.56	PASS	AC=1;AF=0.529;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant21-variant22-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:232,0,176:1,4,3,5
chr1	15860563	.	T	A	273.53	PASS	AC=2;AF=0.788;AN=2;DP=241;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:361,27,0:0,0,6,3
chr1	15860803	.	C	T	1900.21	PASS	AC=1;AF=0.591;AN=2;DP=3587;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,89:143:99:2294,0,1253:29,25,44,45
chr1	15873386	.	A	G	1107.07	PASS	AC=1;AF=0.526;AN=2;DP=1784;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,27:87:99:611,0,1483:25,35,10,17
chr1	15873410	.	CTTT	CTT,CTTTT,CT,C	70.71	PASS	AC=0,0,1,0;AF=0.243,0.014,0.243,0.027;AN=2;DP=2177;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-variant7-variant8-filterInvariant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-filterInvariant33-variant34-variant35-variant39-filterInvariant40-variant41-filterInvariant42	GT:DP:GQ:SB	0/3:28:99:6,6,4,12
chr1	15874961	.	T	A	1176.39	PASS	AC=1;AF=0.526;AN=2;DP=1898;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,60:103:99:1535,0,929:17,26,18,42
chr1	15886344	.	A	C	124.7	PASS	AC=1;AF=0.605;AN=2;DP=189;MQ=60;set=variant8-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:130,0,241:2,5,0,4
chr1	15890355	.	A	AAAAG,AAAG	671.17	PASS	AC=1,0;AF=0.633,0.033;AN=2;DP=229;MQ=60;set=variant12-variant13-variant15-variant17-variant27-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:21:99:9,4,6,2
chr1	15892415	.	A	C	570.15	PASS	AC=1;AF=0.614;AN=2;DP=1359;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,48:69:99:1175,0,420:12,9,28,20
chr1	15892980	.	G	A	318.33	PASS	AC=1;AF=0.591;AN=2;DP=781;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:442,0,252:6,6,7,9
chr1	15893133	.	T	A	189.24	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=3.424;FractionInformativeReads=1;MQ=60;MQRankSum=-1.378;QD=15.77;ReadPosRankSum=1.517;SOR=2.925;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:217,0,154:2,4,0,6
chr1	15894959	.	T	C	2398.33	PASS	AC=1;AF=0.526;AN=2;DP=2943;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,75:156:99:1713,0,1848:47,34,43,32
chr1	15896126	.	CTT	CT,C,CTTTTT,CTTTT,CTTT	33.93	PASS	AC=0,0,0,1,0;AF=0.176,0.059,0.029,0.206,0.088;AN=2;DP=252;MQ=60;set=variant2-variant3-variant9-variant10-filterInvariant12-variant14-variant16-variant19-variant22-variant26-variant31-variant33-variant34-variant35-variant36-variant41-variant44	GT:DP:GQ:SB	0/4:9:87:2,3,1,3
chr1	15896199	.	G	A	36.49	PASS	AC=1;AF=0.679;AN=2;DP=61;FS=0;MQ=60;set=variant8-variant10-variant11-variant12-variant15-variant26-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:75:120,0,75:1,1,0,3
chr1	15896984	.	A	G	222.33	PASS	AC=1;AF=0.591;AN=2;DP=364;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:421,0,381:5,5,6,7
chr1	15897020	.	C	T	263.9	PASS	AC=1;AF=0.526;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:425,0,358:8,4,9,7
chr1	15897508	.	CA	C,CAA	319.56	PASS	AC=0,1;AF=0.274,0.226;AN=2;DP=11925;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-filterInvariant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42-variant44	GT:DP:GQ:SB	0/2:209:99:60,69,30,50
chr1	15899752	.	C	CA	170.68	PASS	AC=1;AF=0.531;AN=2;DP=350;MQ=60;set=variant8-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:116,0,383:16,1,7,0
chr1	15901121	.	C	T	509.9	PASS	AC=1;AF=0.591;AN=2;DP=604;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:390,0,687:15,5,12,2
chr1	15904318	.	C	T	1441.51	PASS	AC=1;AF=0.591;AN=2;DP=2641;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,58:130:99:1400,0,1733:32,40,25,33
chr1	15905501	.	G	A	1636.08	PASS	AC=1;AF=0.531;AN=2;DP=2553;MQ=60;set=variant8-variant10-variant11-variant12-variant15-variant19-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,94:181:99:2228,0,2091:35,52,40,54
chr1	15906696	.	CTT	CT,CTTT,CTTTT,C,CTTTTT	100.33	PASS	AC=0,0,1,0,0;AF=0.167,0.104,0.125,0.104,0.021;AN=2;DP=1188;set=filterInvariant3-variant5-filterInvariant7-filterInvariant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant21-variant24-filterInvariant27-variant28-variant32-variant34-variant35-variant37-filterInvariant38-variant39-variant40-variant41-filterInvariant43	GT:DP:GQ:SB	0/3:16:99:0,8,3,5
chr1	15909441	.	C	T	197.99	PASS	AC=2;AF=0.875;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant16-variant19-variant21-variant22-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:231,21,0:0,0,4,3
chr1	15909480	.	G	C	189.45	PASS	AC=1;AF=0.577;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant19-variant20-variant21-variant28-variant31-variant32-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:171,0,140:3,2,5,4
chr1	15909547	.	G	A	772.7	PASS	AC=2;AF=0.767;AN=2;DP=603;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:458,42,0:0,0,9,5
chr1	15909624	.	TGAGTACAG	T	2482.96	PASS	AC=2;AF=0.758;AN=2;DP=1631;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1755,118,0:0,0,23,16
chr1	15909744	.	C	T	1274.89	PASS	AC=1;AF=0.614;AN=2;DP=2298;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,37:98:99:966,0,1652:33,28,19,18
chr1	15909850	.	C	G	2429.36	PASS	AC=2;AF=0.758;AN=2;DP=2727;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2552,249,0:0,0,31,52
chr1	15909895	.	A	G	1315.96	PASS	AC=2;AF=0.758;AN=2;DP=1626;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1621,143,0:0,0,11,37
chr1	15911010	.	T	G	1997.24	PASS	AC=2;AF=0.758;AN=2;DP=1750;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1852,162,0:0,0,39,15
chr1	15911031	.	T	G	2264.77	PASS	AC=2;AF=0.758;AN=2;DP=2143;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1976,183,0:0,0,40,21
chr1	15911131	.	G	A	1453.47	PASS	AC=1;AF=0.614;AN=2;DP=3474;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,65:140:99:1479,0,1944:39,36,37,28
chr1	15911349	.	G	A	884.93	PASS	AC=1;AF=0.526;AN=2;DP=1431;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:880,0,771:10,19,13,19
chr1	15911493	.	A	G	1948.36	PASS	AC=2;AF=0.758;AN=2;DP=1783;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1869,167,0:0,0,37,19
chr1	15911597	.	A	G	3182.06	PASS	AC=2;AF=0.758;AN=2;DP=2912;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2955,290,0:0,0,53,44
chr1	15911622	.	A	AG	3795.08	PASS	AC=2;AF=0.758;AN=2;DP=3011;MQ=60;set=variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,98:99:99:3507,294,0:1,0,46,52
chr1	15911730	.	T	G	611.85	PASS	AC=1;AF=0.526;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:402,0,535:6,14,2,11
chr1	15944384	.	G	A	1024.74	PASS	AC=2;AF=0.611;AN=2;DP=2211;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,89:90:99:2856,257,0:1,0,34,55
chr1	15956610	.	A	G	380.03	PASS	AC=2;AF=0.611;AN=2;DP=399;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:691,60,0:0,0,15,5
chr1	15956769	.	G	T	1383.1	PASS	AC=2;AF=0.636;AN=2;DP=2611;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4503,461,0:0,0,85,69
chr1	15959886	.	C	G	852.99	PASS	AC=2;AF=0.758;AN=2;DP=1027;MQ=60;set=variant4-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:973,93,0:0,0,20,11
chr1	15959977	.	C	T	595.74	PASS	AC=2;AF=0.636;AN=2;DP=1640;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2089,209,0:0,0,37,33
chr1	15960447	.	C	T	499.11	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=5.961;FractionInformativeReads=1;MQ=60;MQRankSum=0.789;QD=8.76;ReadPosRankSum=0.561;SOR=0.215;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,23:57:99:527,0,933:9,25,10,13
chr1	15965025	.	CTTTT	CTTT,CT,CTT,CTTTTT,CTTTTTT,C	127.25	PASS	AC=0,0,0,0,0,1;AF=0.167,0.083,0.222,0.083,0.028,0.028;AN=2;DP=555;set=variant3-filterInvariant5-variant10-filterInvariant11-variant12-variant14-variant15-filterInvariant18-variant22-variant25-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/6:7:40:0,3,0,4
chr1	15978553	.	CTTTTTTT	CTTTTTT,CTTTTT,CT,CTT,CTTT,CTTTTTTTTT,C	60.25	PASS	AC=0,0,2,0,0,0,0;AF=0.093,0.056,0.222,0.074,0.074,0.037,0.056;AN=2;DP=663;set=variant-variant5-variant6-variant8-variant12-variant13-variant15-variant17-variant19-variant22-filterInvariant23-variant24-filterInvariant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	3/3:13:25:2,0,1,10
chr1	15986547	.	T	C	1388.16	PASS	AC=2;AF=0.636;AN=2;DP=3020;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:5103,468,0:0,0,60,96
chr1	15988702	.	T	C	3405.77	PASS	AC=2;AF=0.636;AN=2;DP=4843;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,221:222:99:7010,619,0:1,0,105,116
chr1	15988878	.	A	G	1336.54	PASS	AC=2;AF=0.636;AN=2;DP=1844;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2478,198,0:0,0,17,49
chr1	15988957	.	G	A	1092.95	PASS	AC=2;AF=0.8;AN=2;DP=1610;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1408,111,0:0,0,18,19
chr1	15989141	.	C	G	728.62	PASS	AC=2;AF=0.63;AN=2;DP=1169;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1759,152,0:0,0,28,23
chr1	15989918	.	T	C	2900.74	PASS	AC=2;AF=0.636;AN=2;DP=5799;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,240:241:99:7625,712,0:1,0,97,143
chr1	15990552	.	A	G	187.51	PASS	AC=2;AF=0.636;AN=2;DP=849;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,37:38:73:1040,73,0:1,0,19,18
chr1	15990912	.	T	C	995.53	PASS	AC=2;AF=0.636;AN=2;DP=1010;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1704,142,0:0,0,40,7
chr1	15990929	.	CA	C	280.18	PASS	AC=1;AF=0.5;AN=2;DP=3953;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-filterInvariant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,30:85:99:394,0,892:34,21,24,6
chr1	15990983	.	T	G	2663.97	PASS	AC=2;AF=0.63;AN=2;DP=4747;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,200:201:99:6123,589,0:1,0,119,81
chr1	15992469	.	AG	A	1435.18	PASS	AC=2;AF=0.594;AN=2;DP=1357;MQ=60;set=variant8-variant10-variant15-variant19-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3711,280,0:0,0,64,29
chr1	15993208	.	G	C	1360.57	PASS	AC=2;AF=0.643;AN=2;DP=3049;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5359,483,0:0,0,71,90
chr1	15993338	.	A	G	714.13	PASS	AC=2;AF=0.729;AN=2;DP=2199;MQ=60;set=variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2558,234,0:0,0,26,52
chr1	15993713	.	A	AT,ATT	306.08	PASS	AC=2,0;AF=0.625,0.025;AN=2;DP=757;set=variant8-variant10-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:29:86:0,0,22,7
chr1	16011005	.	GGGC	GGGCGGC,G	1973.66	PASS	AC=2,0;AF=0.714,0.014;AN=2;DP=3203;set=variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:102:99:1,1,65,35
chr1	16011192	.	G	GGCGACCCTGCTGCCGCAGGGACTC	1251.71	PASS	AC=2;AF=0.643;AN=2;DP=1840;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3300,231,0:0,0,25,51
chr1	16042724	.	TC	T	391.02	PASS	AC=2;AF=0.583;AN=2;DP=2090;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant26-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:6,68:74:63:1588,63,0:3,3,34,34
chr1	16042766	.	T	C	874.28	PASS	AC=2;AF=0.643;AN=2;DP=2503;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2823,263,0:0,0,39,49
chr1	16043157	.	G	A	1082.84	PASS	AC=2;AF=0.611;AN=2;DP=1304;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant26-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2174,223,0:0,0,46,29
chr1	16044401	.	G	A	898.55	PASS	AC=2;AF=0.611;AN=2;DP=1161;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant26-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2100,197,0:0,0,46,20
chr1	16044807	.	C	G	411.6	PASS	AC=2;AF=0.611;AN=2;DP=525;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant26-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1346,96,0:0,0,25,7
chr1	16044929	.	A	G	1378.97	PASS	AC=2;AF=0.611;AN=2;DP=2447;MQ=60;set=variant8-variant10-variant12-variant15-variant17-variant19-variant26-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3421,338,0:0,0,60,53
chr1	16044945	.	G	A	1451.1	PASS	AC=2;AF=0.643;AN=2;DP=3106;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3442,348,0:0,0,55,61
chr1	16047726	.	T	C	403.84	PASS	AC=2;AF=0.643;AN=2;DP=783;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1142,96,0:0,0,20,12
chr1	16048005	.	A	G	184.4	PASS	AC=2;AF=0.643;AN=2;DP=373;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1073,108,0:0,0,14,22
chr1	16048038	.	T	C	164.93	PASS	AC=2;AF=0.65;AN=2;DP=204;MQ=60;set=variant8-variant10-variant12-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:595,60,0:0,0,8,12
chr1	16051584	.	C	T	731.65	PASS	AC=2;AF=0.989;AN=2;DP=859;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.615;ReadPosRankSum=1.418;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:637,66,0:0,0,14,8
chr1	16053493	.	G	A	1999.92	PASS	AC=1;AF=0.6;AN=2;DP=1454;MQ=60;set=variant2-variant3-variant4-variant10-variant12-variant13-variant16-variant21-variant24-variant26-variant29-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,36:90:99:887,0,1368:33,21,18,18
chr1	16055039	.	C	T	767.95	PASS	AC=1;AF=0.611;AN=2;DP=462;MQ=60;set=variant2-variant3-variant4-variant10-variant13-variant16-variant21-variant24-variant26-variant29-variant32-variant33-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:440,0,617:15,3,11,4
chr1	16055732	.	C	T	3077.67	PASS	AC=1;AF=0.6;AN=2;DP=2111;MQ=60;set=variant2-variant3-variant4-variant10-variant12-variant13-variant16-variant21-variant24-variant26-variant29-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,43:87:99:1054,0,1233:13,31,15,28
chr1	16056364	.	G	A	3131.37	PASS	AC=1;AF=0.6;AN=2;DP=2485;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant10-variant12-variant13-variant16-variant21-variant24-variant26-variant29-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,71:132:99:1602,0,1528:21,40,33,38
chr1	16058698	.	CA	C	1939.46	PASS	AC=1;AF=0.6;AN=2;DP=1036;MQ=60;set=variant2-variant3-variant4-variant10-variant12-variant13-variant16-variant21-variant24-variant26-variant29-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,12:41:99:346,0,1006:11,18,5,7
chr1	16060678	.	T	C	3068.81	PASS	AC=1;AF=0.6;AN=2;DP=2179;MQ=60;set=variant2-variant3-variant4-variant10-variant12-variant13-variant16-variant21-variant24-variant26-variant29-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,53:109:99:1296,0,1429:25,31,28,25
chr1	16061035	.	G	C	2830.3	PASS	AC=1;AF=0.6;AN=2;DP=1732;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant10-variant12-variant13-variant16-variant21-variant24-variant26-variant29-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:1122,0,1075:18,21,20,20
chr1	16064411	.	T	C	3808.66	PASS	AC=1;AF=0.6;AN=2;DP=2659;MQ=60;set=variant2-variant3-variant4-variant10-variant12-variant13-variant16-variant21-variant24-variant26-variant29-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,66:135:99:1663,0,1921:48,21,39,27
chr1	16065276	.	AAC	A,AACAC	541.8	PASS	AC=1,0;AF=0.56,0.02;AN=2;DP=849;set=variant2-variant3-variant4-variant10-filterInvariant11-variant12-variant16-filterInvariant18-filterInvariant20-variant21-variant24-filterInvariant25-variant26-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:26:99:4,9,3,10
chr1	16065303	.	ACACACT	A	553.84	PASS	AC=1;AF=0.63;AN=2;DP=647;set=variant4-variant5-variant8-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:400,0,218:1,5,3,8
chr1	16069644	.	C	T	3350.13	PASS	AC=1;AF=0.682;AN=2;DP=2409;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant16-variant20-variant21-variant24-variant26-variant29-variant30-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,43:103:99:1168,0,1611:24,36,13,30
chr1	16074468	.	T	A	1287.68	PASS	AC=1;AF=0.66;AN=2;DP=1399;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant13-variant16-variant20-variant21-variant23-variant24-variant26-variant29-variant30-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,32:57:99:812,0,559:10,15,12,20
chr1	16074494	.	C	T	1854.95	PASS	AC=1;AF=0.65;AN=2;DP=948;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant12-variant16-variant20-variant21-variant23-variant24-variant26-variant30-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,30:51:99:771,0,497:9,12,10,20
chr1	16091074	.	A	G	305.15	PASS	AC=1;AF=0.596;AN=2;DP=1379;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant10-variant11-variant13-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:793,0,857:18,15,18,14
chr1	16095316	.	C	T	31.67	PASS	AC=1;AF=0.737;AN=2;DP=474;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:11:274,0,11:0,1,0,7
chr1	16096934	.	C	T	863.91	PASS	AC=1;AF=0.731;AN=2;DP=2257;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:699,0,425:11,5,16,8
chr1	16097237	.	G	A	144.7	PASS	AC=1;AF=0.798;AN=2;DP=1558;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:286,0,420:1,12,3,7
chr1	16111412	.	TC	T	450.17	PASS	AC=1;AF=0.528;AN=2;DP=858;MQ=60;set=variant-variant3-variant6-variant7-variant10-variant11-variant13-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,15:44:99:429,0,951:12,17,6,9
chr1	16112326	.	G	A	804.19	PASS	AC=1;AF=0.528;AN=2;DP=1646;MQ=60;set=variant-variant3-variant6-variant7-variant10-variant11-variant13-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,36:88:99:904,0,1411:30,22,24,12
chr1	16112795	.	A	G	2442.09	PASS	AC=1;AF=0.671;AN=2;DP=3612;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,40:86:99:962,0,1041:20,26,17,23
chr1	16200163	.	A	G	6033.08	PASS	AC=1;AF=0.548;AN=2;DP=8566;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant12-variant14-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:173,181:354:99:4827,0,4585:101,72,102,79
chr1	16256007	.	T	C	541.63	PASS	AC=1;AF=0.677;AN=2;DP=1607;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,15:41:99:366,0,756:15,11,8,7
chr1	16259813	.	A	G	1062.13	PASS	AC=1;AF=0.677;AN=2;DP=4117;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,58:114:99:1430,0,1538:30,26,32,26
chr1	16265060	.	CTTT	CTT,CT,C	252.48	PASS	AC=0,1,0;AF=0.268,0.232,0.054;AN=2;DP=501;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant15-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:17:99:9,2,5,1
chr1	16265422	.	A	G	87.15	PASS	AC=1;AF=0.677;AN=2;DP=2408;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,27:69:99:703,0,1164:14,28,8,19
chr1	16267040	.	A	C	493.45	PASS	AC=1;AF=0.683;AN=2;DP=1045;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:741,0,647:0,19,2,20
chr1	16271260	.	G	A	1496.52	PASS	AC=1;AF=0.525;AN=2;DP=3983;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant12-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,97:183:99:2435,0,2180:42,44,56,41
chr1	16272250	.	A	G	937.23	PASS	AC=1;AF=0.63;AN=2;DP=3721;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant12-variant13-variant14-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,49:115:99:1097,0,1801:39,27,30,19
chr1	16333142	.	GAATA	G	847.4	PASS	AC=1;AF=0.556;AN=2;DP=861;MQ=60;set=variant2-variant5-variant8-variant9-variant12-variant14-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:741,0,1036:8,11,10,9
chr1	16333569	.	T	G	2299.25	PASS	AC=2;AF=0.932;AN=2;DP=3675;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2653,240,0:0,0,34,46
chr1	16333743	.	CA	C	170.9	PASS	AC=1;AF=0.529;AN=2;DP=737;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-filterInvariant19-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-filterInvariant35-variant36-variant37-variant38-variant39-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:124,0,124:3,4,2,6
chr1	16340460	.	G	T	302.94	PASS	AC=1;AF=0.731;AN=2;DP=1084;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:555,0,445:12,5,14,7
chr1	16340761	.	T	C	768.32	PASS	AC=1;AF=0.731;AN=2;DP=3502;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,47:94:99:1154,0,1121:20,27,22,25
chr1	16340843	.	TC	T	1176.42	PASS	AC=1;AF=0.775;AN=2;DP=2123;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:668,0,704:12,16,12,15
chr1	16340879	.	T	G	1175.45	PASS	AC=1;AF=0.763;AN=2;DP=1823;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:739,0,580:10,13,13,14
chr1	16340951	.	A	T	866.65	PASS	AC=1;AF=0.775;AN=2;DP=1652;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:395,0,707:12,11,6,9
chr1	16341354	.	T	G	1328.31	PASS	AC=1;AF=0.731;AN=2;DP=3617;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,32:76:99:943,0,1147:18,26,13,19
chr1	16341649	.	C	T,G	545.24	PASS	AC=0,1;AF=0.628,0.103;AN=2;DP=2378;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:64:99:15,13,17,19
chr1	16341650	.	C	T	928.69	PASS	AC=1;AF=0.571;AN=2;DP=459;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant19-variant29-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,35:63:99:1418,0,1210:15,13,17,18
chr1	16341733	.	T	C	894.05	PASS	AC=1;AF=0.731;AN=2;DP=2578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,40:72:99:1008,0,836:16,16,19,21
chr1	16342237	.	A	G	765.02	PASS	AC=1;AF=0.731;AN=2;DP=2863;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:633,0,943:15,21,12,16
chr1	16344360	.	A	G	1163.2	PASS	AC=1;AF=0.744;AN=2;DP=5256;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,72:139:99:1731,0,1438:34,33,45,27
chr1	16344402	.	G	A	1576	PASS	AC=1;AF=0.731;AN=2;DP=6046;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,94:168:99:2345,0,1730:41,33,55,39
chr1	16344494	.	G	A	1814.37	PASS	AC=1;AF=0.731;AN=2;DP=5928;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,80:162:99:1992,0,1928:45,37,37,43
chr1	16344625	.	C	G	870.46	PASS	AC=1;AF=0.75;AN=2;DP=3392;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1461,0,1563:22,32,22,28
chr1	16344664	.	G	A	2930.76	PASS	AC=1;AF=0.697;AN=2;DP=2455;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,37:82:99:1083,0,1327:20,25,20,17
chr1	16344730	.	T	C	1292.08	PASS	AC=1;AF=0.775;AN=2;DP=2810;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,43:82:99:1130,0,994:21,18,21,22
chr1	16344858	.	C	T	1104.04	PASS	AC=1;AF=0.737;AN=2;DP=4087;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,50:105:99:1324,0,1309:24,31,27,23
chr1	16345208	.	G	A	703.75	PASS	AC=1;AF=0.75;AN=2;DP=2444;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,28:68:99:603,0,962:19,21,11,17
chr1	16345393	.	T	C	120.71	PASS	AC=1;AF=0.817;AN=2;DP=233;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:62:62,0,165:1,3,1,1
chr1	16345619	.	T	C	726.7	PASS	AC=1;AF=0.75;AN=2;DP=2928;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,49:84:99:1341,0,885:25,10,35,14
chr1	16346009	.	G	GC	4613.99	PASS	AC=1;AF=0.697;AN=2;DP=4030;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,51:107:99:1297,0,1462:24,32,19,32
chr1	16348412	.	T	C	1720.79	PASS	AC=1;AF=0.775;AN=2;DP=1961;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:522,0,683:13,14,12,12
chr1	16350028	.	A	G	236.43	PASS	AC=1;AF=0.792;AN=2;DP=411;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:142,0,300:8,0,4,1
chr1	16350123	.	C	G	223.62	PASS	AC=1;AF=0.75;AN=2;DP=1219;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,11:38:99:256,0,702:16,11,7,4
chr1	16351275	.	A	G	99.4	PASS	AC=1;AF=0.75;AN=2;DP=1297;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:446,0,436:11,4,10,3
chr1	16352937	.	G	A	2036.71	PASS	AC=1;AF=0.708;AN=2;DP=5439;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,60:136:99:1544,0,2101:53,23,41,19
chr1	16353400	.	T	C	1909.22	PASS	AC=1;AF=0.763;AN=2;DP=1718;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:567,0,469:3,12,3,13
chr1	16356501	.	G	A	638.79	PASS	AC=1;AF=0.757;AN=2;DP=3167;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,56:106:99:1457,0,1101:23,27,30,26
chr1	16356583	.	C	T	2827.27	PASS	AC=1;AF=0.697;AN=2;DP=2331;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,50:87:99:1174,0,905:14,23,19,31
chr1	16358148	.	T	C	5555.14	PASS	AC=1;AF=0.782;AN=2;DP=8852;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,98:215:99:2299,0,2980:74,43,59,39
chr1	16358520	.	T	C	308.11	PASS	AC=1;AF=0.587;AN=2;DP=728;FractionInformativeReads=1;set=variant2-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:590,0,505:13,2,14,4
chr1	16358685	.	C	G	4536.03	PASS	AC=1;AF=0.743;AN=2;DP=6496;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,106:198:99:2384,0,2044:41,51,49,57
chr1	16358932	.	T	C	3158.63	PASS	AC=1;AF=0.782;AN=2;DP=7518;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,100:190:99:2297,0,1967:53,37,57,43
chr1	16359051	.	C	A	800.37	PASS	AC=1;AF=0.757;AN=2;DP=5333;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,62:140:99:1411,0,1881:33,45,23,39
chr1	16359052	.	A	G	2029.15	PASS	AC=2;AF=0.943;AN=2;DP=6206;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:5029,420,0:0,0,55,83
chr1	16359106	.	C	T	234.13	PASS	AC=1;AF=0.714;AN=2;DP=2230;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,31:73:99:841,0,1168:11,31,8,23
chr1	16359123	.	A	G	480.75	PASS	AC=1;AF=0.782;AN=2;DP=1569;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:598,0,892:1,25,4,16
chr1	16360316	.	A	T	393.94	PASS	AC=1;AF=0.75;AN=2;DP=331;FractionInformativeReads=1;set=variant3-variant4-variant5-filterInvariant6-variant7-variant10-variant11-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant19-variant20-variant21-variant24-variant25-variant26-filterInvariant28-variant29-variant32-variant33-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:168,0,230:4,4,3,5
chr1	16360444	.	C	T	1645.63	PASS	AC=2;AF=1;AN=2;DP=56;FS=0;FractionInformativeReads=1;MQ=51.43;QD=29.39;SOR=1.009;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1674,168,0:0,0,32,24
chr1	16361875	.	A	G	1669.46	PASS	AC=2;AF=0.943;AN=2;DP=2160;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1292,99,0:0,0,28,5
chr1	16361916	.	G	A	2068.07	PASS	AC=1;AF=0.733;AN=2;DP=5308;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,45:85:99:1085,0,974:26,14,28,17
chr1	16361989	.	C	T	170.64	PASS	AC=1;AF=0.5;AN=2;DP=1276;FractionInformativeReads=1;set=filterInvariant3-variant4-filterInvariant6-filterInvariant10-variant15-filterInvariant19-filterInvariant28-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:130,12:142:99:107,0,5399:59,71,6,6
chr1	16362005	.	GCCCT	G	51.6	PASS	AC=1;AF=0.5;AN=2;DP=2221;FractionInformativeReads=1;set=filterInvariant2-filterInvariant3-variant4-filterInvariant6-variant7-filterInvariant10-variant13-variant15-filterInvariant19-filterInvariant25-filterInvariant28-filterInvariant32-variant35-filterInvariant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:138,12:150:86:86,0,5748:60,78,6,6
chr1	16362109	.	ACT	A	445.85	PASS	AC=1;AF=0.674;AN=2;DP=1424;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,8:30:99:245,0,2270:6,16,2,6
chr1	16362119	.	T	C	454.57	PASS	AC=1;AF=0.674;AN=2;DP=1076;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,5:23:99:229,0,2194:5,13,0,5
chr1	16362125	.	G	C	454.57	PASS	AC=1;AF=0.683;AN=2;DP=887;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,4:19:99:123,0,1925:4,11,0,4
chr1	16362128	.	C	T	370.63	PASS	AC=1;AF=0.688;AN=2;DP=802;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,4:18:99:123,0,1925:4,10,0,4
chr1	16362561	.	C	G	1341.54	PASS	AC=1;AF=0.797;AN=2;DP=4961;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,67:154:99:1715,0,2350:59,28,47,20
chr1	16362621	.	G	A	3061.94	PASS	AC=2;AF=1;AN=2;DP=14271;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,320:321:99:9639,953,0:1,0,185,135
chr1	16362661	.	A	C	4046.59	PASS	AC=1;AF=0.743;AN=2;DP=14418;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:203,202:405:99:4562,0,5001:106,97,110,92
chr1	16366167	.	G	A	3246.48	PASS	AC=1;AF=0.771;AN=2;DP=4221;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,34:89:99:799,0,1440:24,31,12,22
chr1	16366213	.	T	C	3332.5	PASS	AC=1;AF=0.703;AN=2;DP=2462;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,22:55:99:523,0,821:13,20,8,14
chr1	16366234	.	T	G	1753.55	PASS	AC=2;AF=0.93;AN=2;DP=2241;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1248,96,0:0,0,8,24
chr1	16370178	.	A	AGCTCT	430.36	PASS	AC=2;AF=0.7;AN=2;DP=690;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:810,54,0:0,0,10,8
chr1	16370215	.	A	G	378.94	PASS	AC=2;AF=0.708;AN=2;DP=1152;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:690,66,0:0,0,12,10
chr1	16370427	.	CGGGGG	C	577.38	PASS	AC=2;AF=0.839;AN=2;DP=354;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,11:13:10:431,10,0:0,2,4,7
chr1	16370479	.	T	C	341.36	PASS	AC=2;AF=0.75;AN=2;DP=219;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant14-variant16-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:427,39,0:0,0,4,9
chr1	16370873	.	C	CACACAT,CACACACACAT,CACACACACACACAT,CACACACAT,CACACACACACAT	1073.12	PASS	AC=0,2,0,0,0;AF=0.028,0.472,0.278,0.069,0.028;AN=2;DP=1020;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	2/2:19:81:0,0,16,3
chr1	16370899	.	G	A	453.98	PASS	AC=2;AF=0.833;AN=2;DP=1922;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1335,123,0:0,0,30,11
chr1	16371067	.	G	T	4980.28	PASS	AC=2;AF=0.846;AN=2;DP=7699;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,182:183:99:5289,536,0:1,0,93,89
chr1	16371872	.	C	G	789.58	PASS	AC=2;AF=0.846;AN=2;DP=1424;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1033,99,0:0,0,20,13
chr1	16371932	.	A	C	1014.81	PASS	AC=2;AF=0.943;AN=2;DP=2491;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1453,135,0:0,0,30,15
chr1	16372003	.	G	C	2609.65	PASS	AC=2;AF=0.846;AN=2;DP=3315;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3030,273,0:0,0,61,30
chr1	16372283	.	T	G	894.74	PASS	AC=2;AF=0.808;AN=2;DP=1315;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:71:799,71,0:0,0,13,11
chr1	16373124	.	A	G	701.47	PASS	AC=2;AF=0.902;AN=2;DP=3690;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2552,260,0:0,0,47,40
chr1	16373199	.	CCTT	C	1267.73	PASS	AC=2;AF=0.89;AN=2;DP=3963;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:3264,220,0:0,0,28,45
chr1	16373282	.	A	G	328.54	PASS	AC=2;AF=0.902;AN=2;DP=1577;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1087,87,0:0,0,6,23
chr1	16374533	.	G	C	2076.84	PASS	AC=2;AF=0.955;AN=2;DP=4444;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2428,237,0:0,0,42,37
chr1	16374622	.	C	G	1999.53	PASS	AC=2;AF=0.902;AN=2;DP=3682;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2730,237,0:0,0,40,39
chr1	16374656	.	A	G	1977.19	PASS	AC=2;AF=0.902;AN=2;DP=3777;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2894,247,0:0,0,52,31
chr1	16374994	.	C	T	5605.65	PASS	AC=2;AF=0.902;AN=2;DP=8652;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:6619,617,0:0,0,99,107
chr1	16375063	.	C	G	7741.67	PASS	AC=2;AF=0.932;AN=2;DP=9680;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,193:193:99:8615,581,0:0,0,81,112
chr1	16375064	.	A	C	7741.67	PASS	AC=2;AF=0.932;AN=2;DP=9653;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,192:192:99:8615,581,0:0,0,80,112
chr1	16375210	.	G	A	1759.66	PASS	AC=2;AF=0.683;AN=2;DP=1635;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1633,143,0:0,0,21,27
chr1	16375354	.	C	T	3111.93	PASS	AC=2;AF=0.902;AN=2;DP=5174;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3629,355,0:0,0,66,53
chr1	16375838	.	C	G	6164.42	PASS	AC=2;AF=0.902;AN=2;DP=6590;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4540,423,0:0,0,49,92
chr1	16376191	.	C	T	704.28	PASS	AC=2;AF=0.943;AN=2;DP=1774;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1433,128,0:0,0,33,10
chr1	16376230	.	A	AT	1795.83	PASS	AC=2;AF=0.943;AN=2;DP=3322;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:3640,244,0:0,0,54,24
chr1	16376232	.	A	T	1804.87	PASS	AC=2;AF=0.943;AN=2;DP=3426;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3736,253,0:0,0,55,26
chr1	16376238	.	TC	T	1275.67	PASS	AC=2;AF=0.943;AN=2;DP=3627;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3839,265,0:0,0,57,30
chr1	16376278	.	G	A	1926.88	PASS	AC=2;AF=0.943;AN=2;DP=5536;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3475,362,0:0,0,65,56
chr1	16376319	.	T	C	2131.62	PASS	AC=2;AF=0.943;AN=2;DP=6503;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3861,396,0:0,0,61,71
chr1	16376458	.	T	C,A	557.19	PASS	AC=2,0;AF=0.932,0.011;AN=2;DP=1786;set=Intersection	GT:DP:GQ:SB	1/1:48:99:0,0,16,32
chr1	16379008	.	C	T	766.28	PASS	AC=2;AF=0.884;AN=2;DP=1916;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1388,123,0:0,0,11,30
chr1	16380196	.	T	C	6397.1	PASS	AC=2;AF=1;AN=2;DP=13541;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,315:316:99:9278,936,0:0,1,129,186
chr1	16380243	.	A	G	1336.4	PASS	AC=1;AF=0.725;AN=2;DP=6920;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,89:169:99:3263,0,3021:21,59,31,58
chr1	16380252	.	C	T	1300.33	PASS	AC=1;AF=0.713;AN=2;DP=6011;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,81:159:99:3120,0,3053:19,59,24,57
chr1	16381718	.	T	C	2390.06	PASS	AC=1;AF=0.895;AN=2;DP=2036;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:745,0,682:19,2,19,4
chr1	16382877	.	A	G	4583.7	PASS	AC=2;AF=0.907;AN=2;DP=13277;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,292:292:99:13061,882,0:0,0,148,144
chr1	16382880	.	T	A	1496.45	PASS	AC=2;AF=0.621;AN=2;DP=9392;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,291:291:99:13062,882,0:0,0,148,143
chr1	16383267	.	A	G	120.66	PASS	AC=1;AF=0.603;AN=2;DP=1588;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,43:72:99:899,0,625:16,13,21,22
chr1	16383329	.	T	TC,TCC	277.71	PASS	AC=1,0;AF=0.837,0.023;AN=2;DP=1504;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:45:99:4,18,3,20
chr1	16383336	.	G	C	286.77	PASS	AC=1;AF=0.884;AN=2;DP=1423;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:923,0,1010:6,18,3,21
chr1	16383348	.	C	T	88.72	PASS	AC=1;AF=0.603;AN=2;DP=1102;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:621,0,739:6,20,1,19
chr1	16383448	.	A	C	1435.23	PASS	AC=2;AF=1;AN=2;DP=1518;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:966,93,0:0,0,12,19
chr1	16383515	.	C	T	45.63	PASS	AC=1;AF=0.611;AN=2;DP=465;FractionInformativeReads=1;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-filterInvariant14-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:310,0,222:5,3,4,7
chr1	16383581	.	G	T	286.61	PASS	AC=1;AF=0.573;AN=2;DP=680;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:402,0,345:7,2,7,4
chr1	16383605	.	A	G	408.7	PASS	AC=1;AF=0.547;AN=2;DP=1076;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:451,0,631:15,4,11,3
chr1	16383668	.	T	G	1571.04	PASS	AC=2;AF=1;AN=2;DP=3569;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2823,240,0:0,0,51,29
chr1	16383682	.	G	C	1616.54	PASS	AC=1;AF=0.5;AN=2;DP=3735;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,26:98:99:485,0,1905:44,28,17,9
chr1	16383742	.	C	G	1372.49	PASS	AC=1;AF=0.602;AN=2;DP=6411;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:42,99:141:99:2503,0,778:23,19,44,55
chr1	16383808	.	G	C	145.31	PASS	AC=1;AF=0.554;AN=2;DP=2794;set=variant-variant2-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant12-variant13-variant14-filterInvariant16-variant17-variant18-variant21-variant22-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-variant30-variant31-filterInvariant33-variant37-variant39-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:87,25:112:99:407,0,2252:38,49,10,15
chr1	16384986	.	G	T	367.58	PASS	AC=1;AF=0.5;AN=2;DP=527;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:542,0,857:10,4,10,4
chr1	16384998	.	G	C	343.5	PASS	AC=1;AF=0.5;AN=2;DP=652;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:402,0,1188:14,4,10,1
chr1	16384999	.	G	A	343.5	PASS	AC=1;AF=0.5;AN=2;DP=670;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:402,0,1188:15,5,10,1
chr1	16385042	.	G	A	588.54	PASS	AC=1;AF=0.5;AN=2;DP=1396;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:503,0,634:17,5,17,2
chr1	16385131	.	C	A	1322.32	PASS	AC=1;AF=0.5;AN=2;DP=1670;set=variant2-variant4-variant9-variant12-variant15-variant17-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,36:124:99:787,0,1998:42,46,26,10
chr1	16385175	.	G	A	559.45	PASS	AC=1;AF=0.634;AN=2;DP=5903;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,75:153:99:2436,0,1756:43,35,31,44
chr1	16385184	.	G	A	3243.55	PASS	AC=1;AF=0.5;AN=2;DP=4925;set=variant3-filterInvariant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,50:157:99:966,0,3831:54,53,20,30
chr1	16385221	.	G	C	1508.85	PASS	AC=1;AF=0.5;AN=2;DP=150;FS=5.999;FractionInformativeReads=1;MQ=46.45;MQRankSum=9.631;QD=10.06;ReadPosRankSum=2.183;SOR=0.379;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,69:150:99:1537,0,1982:32,49,34,35
chr1	16385248	.	C	T	833.72	PASS	AC=1;AF=0.643;AN=2;DP=3161;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,39:112:99:1387,0,2786:32,41,18,21
chr1	16385250	.	A	G	833.72	PASS	AC=1;AF=0.778;AN=2;DP=3003;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,38:103:99:1387,0,2786:30,35,18,20
chr1	16385323	.	A	G	855.92	PASS	AC=1;AF=0.872;AN=2;DP=1584;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,14:48:99:486,0,1345:10,24,6,8
chr1	16385330	.	G	T	806.49	PASS	AC=1;AF=0.875;AN=2;DP=1479;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,14:45:99:492,0,1302:8,23,6,8
chr1	16385797	.	C	G	1706	PASS	AC=1;AF=0.64;AN=2;DP=4784;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,54:124:99:1376,0,1849:47,23,37,17
chr1	16385815	.	G	A,C	848.3	PASS	AC=1,0;AF=0.534,0.034;AN=2;DP=4231;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	0/1:170:99:58,41,44,27
chr1	16385980	.	G	A	6015.28	PASS	AC=1;AF=0.884;AN=2;DP=8526;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,90:211:99:1958,0,3030:48,73,30,60
chr1	16386008	.	T	C	4832.98	PASS	AC=1;AF=0.884;AN=2;DP=6486;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,78:163:99:1996,0,2155:28,57,23,55
chr1	16386247	.	T	C	211.41	PASS	AC=2;AF=1;AN=2;DP=403;FS=0;MQRankSum=0.747;ReadPosRankSum=-0.747;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:548,48,0:0,0,10,6
chr1	16386305	.	G	GC	889.27	PASS	AC=1;AF=0.628;AN=2;DP=1798;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,15:54:99:313,0,1074:22,17,12,3
chr1	16386416	.	G	A	1729.31	PASS	AC=1;AF=0.884;AN=2;DP=4231;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,42:85:99:846,0,1671:23,20,21,21
chr1	16386421	.	C	T	1042.11	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=0.823;FractionInformativeReads=1;MQ=56.13;MQRankSum=0.077;QD=12.56;ReadPosRankSum=-3.404;SOR=0.836;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,43:83:99:1070,0,1537:20,20,23,20
chr1	16386447	.	G	C	1640.1	PASS	AC=2;AF=1;AN=2;DP=3766;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2254,213,0:0,0,34,37
chr1	16388474	.	G	A	163.1	PASS	AC=1;AF=0.571;AN=2;DP=746;FractionInformativeReads=1;set=variant-variant2-variant5-variant7-variant8-filterInvariant9-filterInvariant10-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,12:35:99:263,0,661:17,6,9,3
chr1	16388534	.	C	T	371.45	PASS	AC=1;AF=0.571;AN=2;DP=2206;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,26:81:99:905,0,2482:31,24,22,4
chr1	16388556	.	C	T	4302.3	PASS	AC=1;AF=0.814;AN=2;DP=5021;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,39:101:99:1437,0,2799:34,28,28,11
chr1	16388580	.	C	T,A	1105.58	PASS	AC=1,0;AF=0.517,0.083;AN=2;DP=4499;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant37-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:120:99:40,33,30,17
chr1	16388646	.	T	C	5236.94	PASS	AC=2;AF=0.909;AN=2;DP=7934;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:3931,418,0:0,0,67,73
chr1	16388709	.	G	T	1357.72	PASS	AC=1;AF=0.675;AN=2;DP=4999;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,45:100:99:1003,0,1411:18,37,17,28
chr1	16388737	.	G	A	782.08	PASS	AC=1;AF=0.571;AN=2;DP=2167;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,37:69:99:1043,0,1163:10,22,10,27
chr1	16388756	.	CACCCAT	C	1462.84	PASS	AC=1;AF=0.5;AN=2;DP=807;set=variant2-variant4-variant6-variant9-variant12-variant15-variant17-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:963,0,1055:7,20,7,19
chr1	16388766	.	C	T	1575.79	PASS	AC=2;AF=0.898;AN=2;DP=2429;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1902,141,0:0,0,11,33
chr1	16388875	.	GCCC	GC,GCC,G	453.86	PASS	AC=0,1,0;AF=0.557,0.057,0.1;AN=2;DP=818;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:14:84:5,3,2,4
chr1	16388904	.	A	T	268.01	PASS	AC=1;AF=0.636;AN=2;DP=412;set=variant-variant2-variant7-variant8-variant9-variant13-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:306,0,424:1,8,6,2
chr1	16388909	.	T	C	306.77	PASS	AC=1;AF=0.636;AN=2;DP=415;set=variant-variant2-variant7-variant8-variant9-variant13-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:381,0,415:0,9,7,4
chr1	16389026	.	T	C	261.15	PASS	AC=1;AF=0.635;AN=2;DP=312;FractionInformativeReads=1;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,14:19:99:350,0,121:1,4,8,6
chr1	16451413	.	C	T	1710.79	PASS	AC=2;AF=0.989;AN=2;DP=2883;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1908,173,0:0,0,29,29
chr1	16459637	.	C	T	2301.44	PASS	AC=2;AF=1;AN=2;DP=70;FS=0;FractionInformativeReads=1;MQ=60;QD=32.88;SOR=2.173;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2330,209,0:0,0,52,18
chr1	16459745	.	G	A	2699.88	PASS	AC=2;AF=0.667;AN=2;DP=639;MQ=60;set=variant13-variant31-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,229:229:99:7192,684,0:0,0,145,84
chr1	16460339	.	G	A	654.22	PASS	AC=2;AF=0.625;AN=2;DP=279;FractionInformativeReads=1;MQ=60;set=variant13-variant17-variant31-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1590,153,0:0,0,29,22
chr1	16460541	.	T	C	342.66	PASS	AC=2;AF=0.6;AN=2;DP=244;FractionInformativeReads=1;MQ=60;set=variant13-variant17-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1945,186,0:0,0,24,38
chr1	16460743	.	TAAC	T	1607.63	PASS	AC=2;AF=0.989;AN=2;DP=1850;MQ=60;MQRankSum=2.379;ReadPosRankSum=1.256;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:97:1440,97,0:0,0,19,13
chr1	16460840	.	G	A	496.36	PASS	AC=2;AF=0.625;AN=2;DP=249;FractionInformativeReads=1;MQ=60;set=variant13-variant17-variant31-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2305,204,0:0,0,37,31
chr1	16461121	.	G	A	1489.59	PASS	AC=2;AF=1;AN=2;DP=53;FS=0;FractionInformativeReads=1;MQ=60;QD=28.11;SOR=1.287;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1518,158,0:0,0,20,33
chr1	16461833	.	C	T	198.13	PASS	AC=2;AF=0.6;AN=2;DP=116;FractionInformativeReads=1;MQ=60;set=variant13-variant17-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:785,66,0:0,0,13,9
chr1	16528218	.	G	T	200.3	PASS	AC=1;AF=0.65;AN=2;DP=1255;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,40:70:99:1143,0,948:16,14,23,17
chr1	16528469	.	GCC	G	277.24	PASS	AC=1;AF=0.775;AN=2;DP=1405;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:604,0,2630:6,10,4,12
chr1	16528472	.	TACCCTAGGGACC	T	277.05	PASS	AC=1;AF=0.775;AN=2;DP=1356;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:604,0,2630:5,10,4,12
chr1	16528843	.	A	G	1646.85	PASS	AC=1;AF=0.722;AN=2;DP=1470;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,14:40:99:406,0,755:18,8,12,2
chr1	16533022	.	C	T	1234.59	PASS	AC=1;AF=0.78;AN=2;DP=2651;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,30:51:99:830,0,622:4,17,8,22
chr1	16533830	.	AATTC	A	283.9	PASS	AC=1;AF=0.795;AN=2;DP=706;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:308,0,329:1,6,2,6
chr1	16535804	.	G	C	46.96	PASS	AC=1;AF=0.78;AN=2;DP=627;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:298,0,176:3,4,4,6
chr1	16542937	.	T	G	1208.87	PASS	AC=1;AF=0.568;AN=2;DP=865;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant11-variant13-variant17-variant18-variant20-variant23-variant25-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,15:39:99:449,0,805:19,5,13,2
chr1	16543175	.	A	C	2259.04	PASS	AC=2;AF=1;AN=2;DP=4450;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3409,324,0:0,0,42,66
chr1	16555105	.	C	T	316.48	PASS	AC=1;AF=0.58;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:88:88,0,594:6,3,2,1
chr1	16555112	.	C	T	56.89	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.592;QD=4.38;ReadPosRankSum=-0.085;SOR=0.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:85:85,0,616:6,4,2,1
chr1	16555882	.	C	T	803.6	PASS	AC=1;AF=0.58;AN=2;DP=622;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:472,0,467:12,2,13,0
chr1	16558493	.	A	G	3207.45	PASS	AC=1;AF=0.5;AN=2;DP=259;FS=1.508;FractionInformativeReads=1;MQ=60;MQRankSum=3.301;QD=12.38;ReadPosRankSum=-2.048;SOR=0.588;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:129,130:259:99:3236,0,3339:76,53,73,57
chr1	16558838	.	C	A	1151.95	PASS	AC=1;AF=0.613;AN=2;DP=3628;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,55:111:99:1550,0,1433:22,34,18,37
chr1	16558976	.	G	A	681.52	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=1.203;FractionInformativeReads=1;MQ=60;MQRankSum=0.427;QD=16.23;ReadPosRankSum=1.127;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,26:42:99:710,0,589:9,7,13,13
chr1	16559200	.	G	T	1281.6	PASS	AC=1;AF=0.5;AN=2;DP=100;FS=0.738;FractionInformativeReads=1;MQ=60;MQRankSum=-1.11;QD=12.82;ReadPosRankSum=-0.434;SOR=0.613;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,51:100:99:1310,0,1211:22,27,24,27
chr1	16559541	.	C	G	2152.72	PASS	AC=1;AF=0.6;AN=2;DP=2374;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,39:89:99:1012,0,1228:19,31,13,26
chr1	16562968	.	C	A	566.73	PASS	AC=2;AF=0.821;AN=2;DP=1013;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:760,60,0:0,0,17,3
chr1	16563635	.	A	G	1113.87	PASS	AC=2;AF=0.821;AN=2;DP=1911;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1074,111,0:0,0,16,21
chr1	16574316	.	T	C	1715.98	PASS	AC=2;AF=0.821;AN=2;DP=2558;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2190,171,0:0,0,10,47
chr1	16574382	.	A	C	619.59	PASS	AC=1;AF=0.574;AN=2;DP=818;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:434,0,204:4,4,4,10
chr1	16576505	.	C	T	607.59	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.902;QD=10.13;ReadPosRankSum=-0.395;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,26:60:99:636,0,975:11,23,9,17
chr1	16576836	.	A	G	1458.3	PASS	AC=1;AF=0.574;AN=2;DP=1386;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,24:59:99:538,0,748:17,18,12,12
chr1	16577908	.	G	C	2454.84	PASS	AC=1;AF=0.574;AN=2;DP=3581;set=variant-variant2-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,62:162:99:1422,0,2498:53,47,29,33
chr1	16577948	.	G	A	1389.88	PASS	AC=1;AF=0.5;AN=2;DP=156;FS=1.283;FractionInformativeReads=1;MQ=60;MQRankSum=0.315;QD=8.91;ReadPosRankSum=-0.497;SOR=0.812;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:96,60:156:99:1418,0,2375:50,46,33,27
chr1	16579070	.	C	T	805.92	PASS	AC=1;AF=0.556;AN=2;DP=620;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant23-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:443,0,342:3,9,3,12
chr1	16621183	.	C	T	1496.67	PASS	AC=2;AF=0.821;AN=2;DP=2105;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1985,186,0:0,0,41,21
chr1	16641899	.	C	T	905.19	PASS	AC=1;AF=0.613;AN=2;DP=3029;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,43:82:99:1192,0,935:17,22,17,26
chr1	16693526	.	G	C	587.35	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.205;QD=11.75;ReadPosRankSum=0.264;SOR=0.577;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:616,0,909:21,7,16,6
chr1	16694065	.	G	C	168.17	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.466;QD=15.29;ReadPosRankSum=1.031;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:196,0,144:3,2,4,2
chr1	16713700	.	T	G	1470.54	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=1.446;FractionInformativeReads=1;MQ=60;MQRankSum=-1.024;QD=12.05;ReadPosRankSum=2.079;SOR=0.903;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,61:122:99:1499,0,1641:30,31,27,34
chr1	16713964	.	A	G	694.58	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=3.451;FractionInformativeReads=1;MQ=60;MQRankSum=-1.925;QD=10.07;ReadPosRankSum=-2.695;SOR=1.255;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,28:69:99:723,0,1202:23,18,19,9
chr1	16722100	.	C	CT	5173.9	PASS	AC=1;AF=0.567;AN=2;DP=3726;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:136,104:240:99:2139,0,3086:69,67,50,54
chr1	16722333	.	G	A	915.19	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=2.034;FractionInformativeReads=0.986;MQ=60;MQRankSum=-1.01;QD=12.89;ReadPosRankSum=-2.29;SOR=0.959;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,35:70:99:943,0,973:13,22,11,24
chr1	16723084	.	G	A	1249.38	PASS	AC=1;AF=0.613;AN=2;DP=4052;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,66:132:99:1758,0,1912:37,29,33,33
chr1	16723268	.	T	C	3646.68	PASS	AC=1;AF=0.567;AN=2;DP=1868;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,47:105:99:1202,0,1552:29,29,18,29
chr1	16725322	.	GGA	G	1527.43	PASS	AC=1;AF=0.5;AN=2;DP=81;FS=0;FractionInformativeReads=0.975;MQ=60;MQRankSum=0.868;QD=18.86;ReadPosRankSum=-1.202;SOR=0.727;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,41:79:99:1565,0,1423:17,21,18,23
chr1	16726167	.	G	T	394.44	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.122;QD=9.86;ReadPosRankSum=0.014;SOR=0.525;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:423,0,450:8,12,9,11
chr1	16727305	.	G	GCTT	2437.16	PASS	AC=1;AF=0.567;AN=2;DP=1501;MQ=60;set=variant-variant6-variant8-variant11-variant13-variant15-variant18-variant20-variant23-variant32-variant34-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,51:113:99:2072,0,2922:27,35,23,28
chr1	16730308	.	G	T	2002.16	PASS	AC=1;AF=0.563;AN=2;DP=1314;MQ=60;set=variant5-variant9-variant21-variant23-variant26-variant28-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:91,98:189:99:2454,0,2476:40,51,41,57
chr1	16730582	.	C	G	436.88	PASS	AC=1;AF=0.621;AN=2;DP=834;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:328,0,667:5,17,5,9
chr1	16731646	.	T	C	5055.85	PASS	AC=2;AF=1;AN=2;DP=4060;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:4399,301,0:0,0,31,69
chr1	16731647	.	G	C	5055.85	PASS	AC=2;AF=0.716;AN=2;DP=3311;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,96:99:99:3813,221,0:1,2,29,67
chr1	16731653	.	C	T	1348.61	PASS	AC=1;AF=0.617;AN=2;DP=2439;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,56:92:99:1569,0,1095:7,29,18,38
chr1	16731661	.	T	C	2819.83	PASS	AC=2;AF=0.716;AN=2;DP=2690;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,82:84:99:3420,203,0:1,1,20,62
chr1	16735364	.	CAAAAA	CA,CAA,CAAA,CAAAA,C	127.81	PASS	AC=1,0,0,0,0;AF=0.3,0.1,0.22,0.04,0.08;AN=2;DP=158;FS=0;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant36-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:4:50:1,1,1,1
chr1	16735403	.	G	GC	323.37	PASS	AC=1;AF=0.69;AN=2;DP=230;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant11-filterInvariant12-variant13-variant16-variant25-variant26-variant29-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:113,0,204:6,2,4,1
chr1	16736546	.	C	T	1070.97	PASS	AC=1;AF=0.73;AN=2;DP=3700;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,53:89:99:1576,0,960:12,24,16,37
chr1	16778265	.	G	T	300.2	PASS	AC=1;AF=0.661;AN=2;DP=1793;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,43:72:99:926,0,754:20,9,25,18
chr1	16786087	.	T	C	1315.25	PASS	AC=2;AF=1;AN=2;DP=2379;FS=0;MQ=60;MQRankSum=-0.896;ReadPosRankSum=0.478;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1450,132,0:0,0,25,19
chr1	16862282	.	G	A	83.76	PASS	AC=1;AF=0.5;AN=2;DP=1294;FractionInformativeReads=1;set=filterInvariant-filterInvariant7-variant15-variant20-variant21-variant26-variant29-filterInvariant30-variant34-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,27:83:99:618,0,1630:49,7,22,5
chr1	16862454	.	T	G	19431.9	PASS	AC=1;AF=0.5;AN=2;DP=59379;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:556,600:1156:99:23087,0,20972:309,247,352,248
chr1	16862461	.	T	A	19801.3	PASS	AC=1;AF=0.5;AN=2;DP=60743;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:567,627:1194:99:23537,0,21132:313,254,362,265
chr1	16862502	.	A	G	24850.1	PASS	AC=1;AF=0.5;AN=2;DP=67059;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:621,733:1354:99:16834,0,12748:304,317,372,361
chr1	16862708	.	T	G	2252.72	PASS	AC=1;AF=0.5;AN=2;DP=9082;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:75,81:156:99:3114,0,3982:20,55,5,76
chr1	16862712	.	G	T	2103.78	PASS	AC=1;AF=0.5;AN=2;DP=8023;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:67,73:140:99:3009,0,3847:17,50,5,68
chr1	16862714	.	T	G	2112.33	PASS	AC=1;AF=0.5;AN=2;DP=7572;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:65,67:132:99:2864,0,3786:16,49,4,63
chr1	16862732	.	A	G	185.05	PASS	AC=1;AF=0.5;AN=2;DP=3714;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:53,26:79:99:1139,0,3352:13,40,0,26
chr1	16863304	.	T	C	1608	PASS	AC=1;AF=0.5;AN=2;DP=12986;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:194,41:235:99:1252,0,8158:97,97,23,18
chr1	16863308	.	G	T	1720.68	PASS	AC=1;AF=0.5;AN=2;DP=13359;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:197,45:242:99:1330,0,8236:97,100,25,20
chr1	16863314	.	A	G	1849.58	PASS	AC=1;AF=0.5;AN=2;DP=14109;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:195,48:243:99:1394,0,8141:96,99,26,22
chr1	16863328	.	T	G	1912.66	PASS	AC=1;AF=0.5;AN=2;DP=14723;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:187,64:251:99:1414,0,4915:88,99,34,30
chr1	16863352	.	C	T	2181.66	PASS	AC=1;AF=0.5;AN=2;DP=14974;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:171,82:253:99:1894,0,4634:73,98,43,39
chr1	16863382	.	A	T	485.63	PASS	AC=1;AF=0.5;AN=2;DP=7685;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant7-variant11-variant12-filterInvariant13-variant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-filterInvariant26-variant29-filterInvariant30-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:185,36:221:99:314,0,4971:78,107,20,16
chr1	16863398	.	A	C	2229.72	PASS	AC=1;AF=0.5;AN=2;DP=11865;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,59:187:99:1411,0,3527:46,82,28,31
chr1	16863514	.	C	T	84.93	PASS	AC=1;AF=0.5;AN=2;DP=1116;set=variant2-variant3-variant4-variant7-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant26-filterInvariant28-variant29-filterInvariant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:361,0,665:0,17,0,12
chr1	16890421	.	G	A	283.53	PASS	AC=1;AF=0.5;AN=2;DP=20908;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:463,65:528:99:531,0,16061:331,132,44,21
chr1	16890428	.	T	A	1340.61	PASS	AC=1;AF=0.5;AN=2;DP=15328;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-variant11-filterInvariant12-variant14-variant15-filterInvariant16-filterInvariant18-filterInvariant19-variant20-variant21-variant22-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant31-filterInvariant32-filterInvariant33-filterInvariant35-variant37-filterInvariant38-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:504,63:567:99:690,0,17322:355,149,46,17
chr1	16890441	.	C	T	656.94	PASS	AC=1;AF=0.5;AN=2;DP=19798;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant13-variant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-variant30-variant32-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:492,158:650:99:3374,0,15752:337,155,112,46
chr1	16890484	.	G	C	378.63	PASS	AC=1;AF=0.5;AN=2;DP=29575;set=filterInvariant-filterInvariant2-filterInvariant4-variant5-variant6-variant7-variant8-variant9-filterInvariant11-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-variant30-filterInvariant31-variant32-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:760,232:992:99:4404,0,21331:460,300,138,94
chr1	16890598	.	T	A	13968	PASS	AC=1;AF=0.534;AN=2;DP=55757;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:643,670:1313:99:18724,0,16218:275,368,299,371
chr1	16890602	.	T	G	1476.86	PASS	AC=1;AF=0.5;AN=2;DP=34777;set=filterInvariant2-variant3-variant4-variant6-filterInvariant7-variant9-variant10-variant12-variant14-variant19-variant20-variant22-variant23-variant25-variant27-variant28-filterInvariant29-filterInvariant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:1146,161:1307:99:765,0,40980:498,648,71,90
chr1	16890639	.	C	T	5891.41	PASS	AC=1;AF=0.5;AN=2;DP=42627;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant37-variant38-filterInvariant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:775,259:1034:99:5638,0,24710:318,457,101,158
chr1	16890644	.	C	T	4350.45	PASS	AC=1;AF=0.5;AN=2;DP=43309;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:741,251:992:99:4539,0,23412:291,450,104,147
chr1	16890671	.	T	C	17120.1	PASS	AC=1;AF=0.545;AN=2;DP=34126;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:309,438:747:99:17357,0,11298:113,196,141,297
chr1	16890672	.	G	A	17120.1	PASS	AC=1;AF=0.545;AN=2;DP=33755;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:304,437:741:99:17357,0,11298:111,193,139,298
chr1	16890760	.	G	A	1328.16	PASS	AC=1;AF=0.511;AN=2;DP=8098;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:108,58:166:99:1748,0,3681:16,92,5,53
chr1	16891233	.	T	C	3224.9	PASS	AC=1;AF=0.5;AN=2;DP=4973;set=variant-variant5-variant6-variant8-variant11-variant13-variant14-variant17-variant18-variant21-filterInvariant22-variant26-variant27-variant29-filterInvariant33-filterInvariant38-variant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:240,93:333:99:1880,0,7330:160,80,60,33
chr1	16891243	.	C	G	6249.01	PASS	AC=2;AF=0.795;AN=2;DP=12817;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:39,347:386:75:11115,75,0:21,18,219,128
chr1	16891326	.	T	C	1384.87	PASS	AC=1;AF=0.5;AN=2;DP=1563;set=variant13-filterInvariant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:564,124:688:99:1576,0,15082:292,272,62,62
chr1	16891485	.	C	T	2686.74	PASS	AC=1;AF=0.536;AN=2;DP=11178;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:169,140:309:99:4230,0,4295:70,99,23,117
chr1	16891585	.	T	G	158.56	PASS	AC=1;AF=0.5;AN=2;DP=1135;set=variant-variant5-variant6-variant8-variant11-filterInvariant17-filterInvariant21-variant26-filterInvariant27-variant29-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:118,13:131:99:125,0,3387:38,80,2,11
chr1	16892310	.	T	G	2858.92	PASS	AC=1;AF=0.511;AN=2;DP=11165;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,236:310:99:6731,0,1640:55,19,49,187
chr1	16892407	.	A	G	475.99	PASS	AC=1;AF=0.5;AN=2;DP=6759;set=variant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant40-variant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:114,119:233:99:2880,0,2728:71,43,79,40
chr1	16892561	.	C	T	3684.59	PASS	AC=2;AF=1;AN=2;DP=12177;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,354:354:99:12697,1069,0:0,0,179,175
chr1	16892578	.	ACT	A	1687.29	PASS	AC=1;AF=0.5;AN=2;DP=12202;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:228,132:360:99:4770,0,9024:109,119,70,62
chr1	16892668	.	A	G	321.47	PASS	AC=1;AF=0.5;AN=2;DP=4592;set=filterInvariant-filterInvariant6-filterInvariant7-variant8-filterInvariant11-filterInvariant13-variant16-variant17-filterInvariant18-filterInvariant21-filterInvariant25-filterInvariant26-filterInvariant27-variant30-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:336,52:388:99:513,0,9882:192,144,25,27
chr1	16892766	.	G	A	2280.4	PASS	AC=1;AF=0.5;AN=2;DP=652;FS=0.681;FractionInformativeReads=1;MQ=52.78;MQRankSum=-1.61;QD=3.5;ReadPosRankSum=-1.377;SOR=0.564;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:528,124:652:99:2309,0,14417:299,229,66,58
chr1	16893033	.	G	A	2496.89	PASS	AC=1;AF=0.705;AN=2;DP=20912;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:257,355:612:99:9524,0,5979:137,120,215,140
chr1	16893071	.	T	G	106.58	PASS	AC=1;AF=0.5;AN=2;DP=8904;set=filterInvariant-variant7-filterInvariant8-filterInvariant10-filterInvariant12-filterInvariant13-variant15-filterInvariant16-filterInvariant19-filterInvariant24-variant25-filterInvariant26-variant30-filterInvariant31-variant34-variant40-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:580,92:672:99:972,0,14952:274,306,48,44
chr1	16893101	.	G	A	2313.05	PASS	AC=1;AF=0.5;AN=2;DP=1440;FractionInformativeReads=1;set=variant13-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:473,149:622:99:2593,0,12088:197,276,56,93
chr1	16893144	.	T	G	2658.97	PASS	AC=1;AF=0.5;AN=2;DP=3825;set=variant-variant5-variant6-variant8-variant11-variant13-variant17-variant18-variant21-variant26-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:279,78:357:99:1745,0,8639:71,208,15,63
chr1	16893841	.	C	T	829.5	PASS	AC=1;AF=0.5;AN=2;DP=19713;set=filterInvariant9-variant12-variant13-filterInvariant18-variant22-variant33-variant34-variant40-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:1971,268:2239:99:1235,0,58152:680,1291,100,168
chr1	16893884	.	G	A	4200.18	PASS	AC=1;AF=0.5;AN=2;DP=39214;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:477,620:1097:99:18113,0,12966:106,371,153,467
chr1	16894301	.	G	T	192.81	PASS	AC=1;AF=0.5;AN=2;DP=2267;set=variant-filterInvariant2-variant4-variant5-variant11-variant15-filterInvariant16-filterInvariant18-filterInvariant20-variant21-variant22-filterInvariant25-variant31-filterInvariant33-variant37-filterInvariant38-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:92,13:105:99:124,0,2754:75,17,12,1
chr1	16894408	.	T	G	274.98	PASS	AC=1;AF=0.5;AN=2;DP=4313;set=filterInvariant2-filterInvariant7-filterInvariant12-variant13-variant16-variant17-filterInvariant18-variant25-filterInvariant27-filterInvariant28-filterInvariant29-variant30-filterInvariant32-variant33-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:244,34:278:99:142,0,6308:151,93,20,14
chr1	16895392	.	AC	A	127.2	PASS	AC=1;AF=0.5;AN=2;DP=2912;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant7-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-filterInvariant24-variant26-variant28-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-variant36-variant37-filterInvariant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,26:110:99:557,0,2486:57,27,18,8
chr1	16895634	.	T	G	4365.94	PASS	AC=2;AF=0.682;AN=2;DP=12386;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-variant26-variant27-filterInvariant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,274:276:99:7802,778,0:1,1,84,190
chr1	16900883	.	T	G	62.88	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4035;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:107,37:144:99:582,0,2397:64,43,25,12
chr1	16901169	.	T	A	361.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=315;FS=4.677;FractionInformativeReads=0.997;MQ=26.25;MQRankSum=1.895;QD=1.15;ReadPosRankSum=1.411;SOR=0.421;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:264,50:314:99:390,0,5923:96,168,22,28
chr1	16901247	.	G	T	41.81	PASS	AC=1;AF=0.5;AN=2;DP=2427;FractionInformativeReads=1;set=filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:66,12:78:99:271,0,2887:8,58,0,12
chr1	16901259	.	T	A	283.75	PASS	AC=1;AF=0.5;AN=2;DP=1398;set=filterInvariant3-filterInvariant4-variant6-filterInvariant7-filterInvariant10-filterInvariant12-filterInvariant14-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:56,10:66:99:245,0,2721:9,47,0,10
chr1	16901549	.	A	G	1055.29	PASS	AC=1;AF=0.5;AN=2;DP=4898;set=variant-variant3-variant4-variant6-variant8-variant10-variant12-variant15-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant27-variant28-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:184,14:198:59:59,0,5724:135,49,12,2
chr1	16901627	.	C	A	815.96	PASS	AC=1;AF=0.5;AN=2;DP=10017;set=variant3-filterInvariant4-variant5-variant6-filterInvariant8-filterInvariant10-variant11-filterInvariant12-variant13-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant23-variant26-filterInvariant27-filterInvariant28-filterInvariant29-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:312,100:412:99:1395,0,7947:175,137,47,53
chr1	16901668	.	T	C	1062.77	PASS	AC=1;AF=0.5;AN=2;DP=11084;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-filterInvariant27-variant29-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:287,98:385:99:1688,0,7058:124,163,45,53
chr1	16901710	.	C	G	1081.82	PASS	AC=1;AF=0.5;AN=2;DP=6655;set=variant-filterInvariant3-variant6-filterInvariant7-variant8-filterInvariant10-variant13-variant15-filterInvariant19-variant20-variant21-filterInvariant22-filterInvariant23-variant27-filterInvariant28-filterInvariant29-variant30-filterInvariant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-filterInvariant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:230,48:278:99:544,0,6326:82,148,10,38
chr1	16901714	.	G	A	3515.06	PASS	AC=1;AF=0.56;AN=2;DP=10585;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,147:256:99:3849,0,2529:33,76,48,99
chr1	16902727	.	G	C	357.93	PASS	AC=1;AF=0.5;AN=2;DP=2947;set=variant3-variant4-variant6-filterInvariant7-variant9-variant10-filterInvariant12-filterInvariant13-variant14-filterInvariant19-filterInvariant20-filterInvariant22-variant23-variant25-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant31-variant32-variant35-filterInvariant36-filterInvariant37-variant38-variant39-filterInvariant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:82,12:94:99:102,0,1898:58,24,11,1
chr1	16902823	.	G	C	321.77	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1127;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:236,36:272:99:114,0,6467:124,112,21,15
chr1	16902844	.	G	T	160.94	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=801;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:237,43:280:99:208,0,6364:121,116,21,22
chr1	16902884	.	T	C	240.51	PASS	AC=1;AF=0.5;AN=2;DP=4946;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-variant11-filterInvariant12-variant15-filterInvariant16-variant19-variant20-variant21-variant22-variant26-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:116,47:163:99:874,0,2740:47,69,22,25
chr1	16902894	.	A	G	1350.96	PASS	AC=2;AF=0.648;AN=2;DP=8122;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:5065,399,0:0,0,52,74
chr1	16902943	.	T	C	258.93	PASS	AC=1;AF=0.5;AN=2;DP=5626;set=variant-variant5-filterInvariant7-filterInvariant9-filterInvariant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant25-variant26-filterInvariant29-filterInvariant31-variant33-filterInvariant34-variant36-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:127,39:166:99:704,0,3528:78,49,28,11
chr1	16903001	.	T	C	179.31	PASS	AC=1;AF=0.5;AN=2;DP=2314;FractionInformativeReads=1;set=filterInvariant2-filterInvariant13-variant16-filterInvariant17-filterInvariant19-filterInvariant25-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:224,33:257:95:95,0,6110:115,109,16,17
chr1	16903663	.	C	T	521.83	PASS	AC=1;AF=0.5;AN=2;DP=2211;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:614,0,741:18,5,19,1
chr1	16903674	.	C	T	434.01	PASS	AC=1;AF=0.5;AN=2;DP=2747;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:1297,0,1631:22,7,29,3
chr1	16903683	.	T	A	539.53	PASS	AC=1;AF=0.5;AN=2;DP=3406;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,38:67:99:1395,0,1608:23,6,31,7
chr1	16903780	.	C	T	314.56	PASS	AC=1;AF=0.5;AN=2;DP=5632;set=filterInvariant4-variant7-variant8-variant11-variant13-filterInvariant15-variant16-variant17-variant18-filterInvariant19-filterInvariant21-filterInvariant23-variant26-variant29-variant33-variant36-variant39-variant40-filterInvariant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:210,41:251:99:386,0,6106:124,86,22,19
chr1	16903786	.	T	C	49.95	PASS	AC=1;AF=0.5;AN=2;DP=1748;FractionInformativeReads=1;set=filterInvariant7-variant18-filterInvariant26-filterInvariant30-filterInvariant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:222,30:252:99:324,0,6390:125,97,16,14
chr1	16903882	.	T	C	50.28	PASS	AC=1;AF=0.5;AN=2;DP=2759;set=filterInvariant5-filterInvariant9-variant11-filterInvariant13-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant21-variant26-variant29-variant33-filterInvariant36-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,17:139:99:173,0,3744:31,91,3,14
chr1	16903912	.	T	A	1325.53	PASS	AC=2;AF=0.698;AN=2;DP=4925;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-variant29-variant31-filterInvariant32-variant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2798,222,0:0,0,0,71
chr1	16903938	.	C	T	38.86	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=125;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:48,7:55:80:80,0,1621:1,47,1,6
chr1	16903977	.	T	C	34.3	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=33;FS=5.465;FractionInformativeReads=1;MQ=37.77;MQRankSum=-0.176;QD=1.04;ReadPosRankSum=-1.18;SOR=0.031;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:28,5:33:63:63,0,951:1,27,1,4
chr1	16904073	.	C	A	60.06	PASS	AC=1;AF=0.5;AN=2;DP=498;FractionInformativeReads=1;set=variant3-variant4-variant7-filterInvariant9-variant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-variant17-filterInvariant19-variant20-variant22-variant23-variant25-variant27-variant30-variant31-variant32-variant33-variant36-filterInvariant37-variant38-variant39-filterInvariant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:251,0,165:4,5,6,5
chr1	16905641	.	C	T	70.69	PASS	AC=1;AF=0.5;AN=2;DP=733;set=variant2-filterInvariant3-variant4-variant7-filterInvariant9-filterInvariant15-filterInvariant16-variant17-variant18-filterInvariant19-filterInvariant24-filterInvariant25-filterInvariant26-variant29-variant33-filterInvariant34-variant39-variant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,6:32:80:80,0,745:11,15,2,4
chr1	16905718	.	A	C	62.07	PASS	AC=1;AF=0.5;AN=2;DP=627;FractionInformativeReads=1;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-filterInvariant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:186,0,651:1,16,0,7
chr1	16905788	.	A	G	79.68	PASS	AC=1;AF=0.5;AN=2;DP=402;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-filterInvariant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:363,0,157:2,3,0,9
chr1	16905789	.	T	C	79.68	PASS	AC=1;AF=0.5;AN=2;DP=393;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-filterInvariant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:363,0,157:2,3,0,9
chr1	16905800	.	G	A	79.68	PASS	AC=1;AF=0.5;AN=2;DP=261;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant20-filterInvariant21-variant22-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:348,0,138:3,1,0,9
chr1	16905803	.	G	C	79.68	PASS	AC=1;AF=0.5;AN=2;DP=206;set=variant4-variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant20-filterInvariant21-variant22-variant28-variant29-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:348,0,138:3,1,0,8
chr1	16907107	.	A	C	508.11	PASS	AC=1;AF=0.5;AN=2;DP=5289;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-variant9-variant11-variant12-variant14-variant15-filterInvariant16-variant18-variant19-variant20-variant21-variant22-variant24-filterInvariant25-filterInvariant26-variant31-variant32-variant33-filterInvariant34-variant35-variant37-filterInvariant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:224,38:262:99:682,0,9790:195,29,31,7
chr1	16907110	.	T	C	3285.55	PASS	AC=1;AF=0.5;AN=2;DP=8583;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:100,177:277:99:6053,0,3305:91,9,144,33
chr1	16907124	.	A	C	4836.66	PASS	AC=1;AF=0.5;AN=2;DP=11837;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:138,237:375:99:7688,0,3790:107,31,184,53
chr1	16907165	.	G	A	1321.35	PASS	AC=1;AF=0.5;AN=2;DP=16925;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant11-filterInvariant12-variant14-variant15-variant16-filterInvariant18-filterInvariant19-variant20-variant21-filterInvariant22-variant26-filterInvariant28-filterInvariant30-filterInvariant31-filterInvariant32-variant34-variant35-variant36-variant37-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:710,92:802:99:680,0,20971:486,224,72,20
chr1	16907328	.	G	T	17721.3	PASS	AC=1;AF=0.511;AN=2;DP=60220;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:449,1264:1713:99:31026,0,8105:196,253,570,694
chr1	16907766	.	A	G	1790.32	PASS	AC=1;AF=0.602;AN=2;DP=4209;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:42,66:108:99:2181,0,862:29,13,64,2
chr1	16907854	.	T	A	6896.79	PASS	AC=1;AF=0.5;AN=2;DP=25314;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:193,366:559:99:15127,0,7038:125,68,240,126
chr1	16907871	.	C	T	8073.31	PASS	AC=1;AF=0.5;AN=2;DP=31480;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:225,453:678:99:16885,0,7491:144,81,278,175
chr1	16908028	.	C	T	571.98	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=630;FS=0;FractionInformativeReads=0.998;MQ=55.59;MQRankSum=4.873;QD=0.91;ReadPosRankSum=-0.617;SOR=0.716;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:548,81:629:99:600,0,16671:234,314,34,47
chr1	16908034	.	C	G	395.69	PASS	AC=1;AF=0.5;AN=2;DP=19589;set=filterInvariant2-filterInvariant3-filterInvariant4-variant7-filterInvariant8-filterInvariant10-filterInvariant11-variant12-filterInvariant13-filterInvariant16-filterInvariant17-variant18-filterInvariant19-filterInvariant22-variant23-variant24-filterInvariant26-filterInvariant29-filterInvariant33-filterInvariant34-variant36-filterInvariant37-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:538,70:608:99:263,0,16534:224,314,30,40
chr1	16908093	.	G	A	320.79	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=397;FS=0.6;FractionInformativeReads=1;MQ=55.35;MQRankSum=3.534;QD=0.81;ReadPosRankSum=-0.638;SOR=0.627;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:349,48:397:99:349,0,12370:113,236,16,32
chr1	16908115	.	A	G	3270.17	PASS	AC=1;AF=0.5;AN=2;DP=13012;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:207,95:302:99:2579,0,7010:70,137,22,73
chr1	16908914	.	G	A	88.37	PASS	AC=1;AF=0.5;AN=2;DP=1554;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,10:51:99:159,0,1080:31,10,7,3
chr1	16908989	.	C	T	186.1	PASS	AC=1;AF=0.5;AN=2;DP=1331;set=variant2-variant3-filterInvariant4-variant7-variant11-variant12-variant15-filterInvariant16-variant18-variant20-variant21-variant22-variant26-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant40-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,11:68:99:107,0,1476:31,26,6,5
chr1	16909000	.	C	A	139.41	PASS	AC=1;AF=0.5;AN=2;DP=897;set=variant-variant2-variant3-variant5-variant7-filterInvariant11-variant13-variant17-filterInvariant18-filterInvariant19-variant26-filterInvariant33-variant36-filterInvariant37-filterInvariant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:40,23:63:99:459,0,1072:22,18,10,13
chr1	16909052	.	C	T	607.85	PASS	AC=2;AF=0.966;AN=2;DP=1649;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:1,45:46:99:1428,130,0:0,1,13,32
chr1	16909100	.	G	C	38.96	PASS	AC=1;AF=0.5;AN=2;DP=825;FS=0;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:246,0,400:0,14,0,10
chr1	16909129	.	T	C	81.22	PASS	AC=1;AF=0.523;AN=2;DP=748;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:305,0,101:0,6,0,11
chr1	16909306	.	T	C	75.05	PASS	AC=2;AF=1;AN=2;DP=5;FS=0;FractionInformativeReads=1;set=variant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:103,9,0:0,0,3,0
chr1	16909376	.	GT	G	37.69	PASS	AC=1;AF=0.625;AN=2;DP=120;FractionInformativeReads=1;set=variant9-variant15-variant17-variant18-variant19-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:90:129,0,90:3,0,2,2
chr1	16910040	.	A	G	360.87	PASS	AC=1;AF=0.5;AN=2;DP=678;set=variant13-filterInvariant15-filterInvariant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:148,36:184:99:509,0,4349:114,34,26,10
chr1	16910064	.	A	G	2984.01	PASS	AC=1;AF=0.534;AN=2;DP=10210;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:52,212:264:99:5710,0,737:27,25,144,68
chr1	16910181	.	C	G	173.41	PASS	AC=1;AF=0.5;AN=2;DP=848;set=filterInvariant11-variant13-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:179,56:235:99:1120,0,4979:53,126,14,42
chr1	16910249	.	T	C	399.42	PASS	AC=1;AF=0.5;AN=2;DP=1971;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-filterInvariant31-variant33-variant34-variant36-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,30:68:99:1035,0,1203:1,37,3,27
chr1	16910302	.	C	T	42.18	PASS	AC=1;AF=0.5;AN=2;DP=362;FractionInformativeReads=1;set=variant2-variant3-variant4-variant11-variant12-variant14-variant15-variant16-variant19-variant21-filterInvariant25-filterInvariant27-variant29-filterInvariant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,6:30:99:104,0,861:4,20,2,4
chr1	16911943	.	T	A	487.8	PASS	AC=1;AF=0.5;AN=2;DP=797;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:544,0,294:4,3,7,7
chr1	16911946	.	G	A	487.8	PASS	AC=1;AF=0.5;AN=2;DP=779;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:544,0,294:4,4,6,7
chr1	16912014	.	A	C	474.91	PASS	AC=1;AF=0.5;AN=2;DP=614;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:539,0,267:2,6,11,5
chr1	16912015	.	G	A	43.56	PASS	AC=1;AF=0.5;AN=2;DP=403;set=variant-variant3-variant4-variant5-variant9-variant11-variant15-variant16-variant20-variant21-variant22-variant24-variant25-variant26-variant31-variant32-variant33-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,4:24:90:90,0,719:11,9,2,2
chr1	16912084	.	A	G	31.51	PASS	AC=1;AF=0.5;AN=2;DP=183;FractionInformativeReads=1;set=filterInvariant8-variant13-variant29-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,6:32:99:216,0,1071:18,8,6,0
chr1	16912085	.	T	C	31.51	PASS	AC=1;AF=0.5;AN=2;DP=184;FractionInformativeReads=1;set=filterInvariant8-variant13-variant29-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,6:32:99:216,0,1071:18,8,6,0
chr1	16912096	.	G	A	37.74	PASS	AC=1;AF=0.5;AN=2;DP=198;FractionInformativeReads=1;set=variant13-filterInvariant19-variant21-variant29-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,9:34:99:332,0,1134:19,6,9,0
chr1	16912099	.	G	C	37.74	PASS	AC=1;AF=0.5;AN=2;DP=207;FractionInformativeReads=1;set=variant13-filterInvariant19-variant21-variant29-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,10:38:99:332,0,1122:22,6,10,0
chr1	16913584	.	A	C	656.15	PASS	AC=1;AF=0.526;AN=2;DP=5700;set=variant10-variant12-filterInvariant13-variant14-variant15-filterInvariant18-variant19-variant20-filterInvariant25-filterInvariant26-filterInvariant29-filterInvariant31-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,82:169:99:1768,0,1586:44,43,35,47
chr1	16913612	.	G	A	292.39	PASS	AC=1;AF=0.529;AN=2;DP=3902;set=filterInvariant10-variant12-filterInvariant13-variant14-variant15-filterInvariant18-variant19-variant20-variant22-filterInvariant25-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,69:155:99:1644,0,1662:44,42,22,47
chr1	16913633	.	G	T	4684.68	PASS	AC=1;AF=0.5;AN=2;DP=7744;set=variant-variant5-variant6-variant8-variant11-filterInvariant13-variant17-variant18-variant21-variant26-variant27-variant29-variant36-filterInvariant37-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:79,26:105:99:309,0,1967:28,51,12,14
chr1	16913677	.	T	C	351.66	PASS	AC=2;AF=0.688;AN=2;DP=525;set=variant15-filterInvariant19-variant20-variant34-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:482,36,0:0,0,0,12
chr1	16914139	.	C	A	1736.14	PASS	AC=1;AF=0.5;AN=2;DP=5556;set=variant-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant29-variant31-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:280,78:358:99:1418,0,8512:198,82,52,26
chr1	16914160	.	G	A	601.13	PASS	AC=1;AF=0.5;AN=2;DP=11282;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant9-filterInvariant10-filterInvariant11-variant12-variant13-variant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:403,59:462:99:1274,0,17024:253,150,57,2
chr1	16914168	.	C	G	1250.03	PASS	AC=1;AF=0.5;AN=2;DP=12956;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-variant31-filterInvariant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:457,65:522:99:1281,0,18176:278,179,63,2
chr1	16914306	.	A	G	1406.82	PASS	AC=1;AF=0.5;AN=2;DP=22571;set=variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant9-variant10-variant12-filterInvariant13-variant14-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-filterInvariant29-filterInvariant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:859,125:984:99:500,0,23229:375,484,56,69
chr1	16914396	.	C	T	1199.27	PASS	AC=1;AF=0.5;AN=2;DP=12760;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:178,163:341:99:5528,0,8245:49,129,45,118
chr1	16914415	.	A	G	712.43	PASS	AC=1;AF=0.5;AN=2;DP=8760;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:132,111:243:99:4422,0,6994:31,101,25,86
chr1	16914442	.	A	G	230.41	PASS	AC=1;AF=0.5;AN=2;DP=2309;set=variant-filterInvariant2-filterInvariant3-variant4-variant7-filterInvariant8-variant11-filterInvariant12-variant13-variant15-variant16-variant17-variant18-variant26-variant33-filterInvariant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,31:137:99:684,0,3550:22,84,2,29
chr1	16915611	.	T	C	32.95	DRAGENHardSNP	AC=1;AF=0.569;AN=2;DP=281;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:4,15:19:42:317,0,42:2,2,9,6
chr1	16916358	.	G	C	2143.08	PASS	AC=2;AF=0.548;AN=2;DP=5054;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:10,87:97:9:2574,9,0:3,7,54,33
chr1	16916515	.	G	A	71.75	PASS	AC=1;AF=0.5;AN=2;DP=4799;set=filterInvariant2-filterInvariant3-variant4-variant11-variant15-filterInvariant16-filterInvariant18-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant26-filterInvariant28-variant34-variant35-filterInvariant36-variant37-filterInvariant40-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:223,29:252:99:331,0,6383:123,100,27,2
chr1	16916569	.	A	G	505.8	PASS	AC=1;AF=0.5;AN=2;DP=9782;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:154,97:251:99:1988,0,3865:61,93,51,46
chr1	16916603	.	C	A	3327.64	PASS	AC=2;AF=0.693;AN=2;DP=7718;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,226:227:99:6753,670,0:0,1,83,143
chr1	16918255	.	A	C	385.75	PASS	AC=1;AF=0.5;AN=2;DP=6328;set=variant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-filterInvariant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-filterInvariant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-filterInvariant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:151,23:174:99:224,0,4890:132,19,20,3
chr1	16918411	.	T	C	686.09	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=954;FS=0.816;FractionInformativeReads=0.999;MQ=55.12;MQRankSum=6.173;QD=0.72;ReadPosRankSum=-3.283;SOR=0.822;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:835,118:953:99:714,0,23161:420,415,63,55
chr1	16918443	.	C	T	822.73	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=896;FS=0.81;FractionInformativeReads=0.997;MQ=56.11;MQRankSum=4.799;QD=0.92;ReadPosRankSum=0.187;SOR=0.797;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:777,116:893:99:851,0,22857:348,429,49,67
chr1	16918465	.	A	G	729.1	PASS	AC=1;AF=0.5;AN=2;DP=26855;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant7-filterInvariant10-variant11-variant12-variant14-variant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:693,90:783:99:1482,0,27735:307,386,25,65
chr1	16918502	.	A	G	5971.79	PASS	AC=1;AF=0.5;AN=2;DP=21919;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:161,398:559:99:10576,0,3074:62,99,160,238
chr1	16918566	.	C	G	758.96	PASS	AC=1;AF=0.5;AN=2;DP=230;FS=2.083;FractionInformativeReads=1;MQ=52.79;MQRankSum=-1.504;QD=3.3;ReadPosRankSum=1.671;SOR=0.395;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:197,33:230:99:787,0,8097:33,164,7,26
chr1	16918717	.	C	T	440.5	PASS	AC=1;AF=0.5;AN=2;DP=2959;set=variant3-filterInvariant4-filterInvariant5-variant6-variant9-variant10-variant12-variant13-variant14-filterInvariant17-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-filterInvariant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:92,31:123:99:537,0,2579:53,39,15,16
chr1	16918734	.	G	C	446.86	PASS	AC=1;AF=0.5;AN=2;DP=3235;set=variant3-filterInvariant4-variant6-variant9-variant10-variant12-variant13-variant14-filterInvariant17-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-filterInvariant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:102,36:138:99:683,0,2721:60,42,19,17
chr1	16918888	.	C	G	219.01	PASS	AC=1;AF=0.5;AN=2;DP=2263;set=variant-variant3-variant4-variant5-variant6-filterInvariant7-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:61,16:77:99:419,0,1570:23,38,4,12
chr1	16918914	.	C	A	67.45	PASS	AC=1;AF=0.5;AN=2;DP=137;FractionInformativeReads=1;set=variant12-variant13-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,10:52:99:157,0,1227:13,29,3,7
chr1	16950261	.	G	C	644.43	PASS	AC=1;AF=0.5;AN=2;DP=4899;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-filterInvariant21-variant24-variant25-variant26-variant27-filterInvariant31-filterInvariant34-variant35-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:208,42:250:99:588,0,6371:137,71,30,12
chr1	16950449	.	A	G	209.67	PASS	AC=1;AF=0.5;AN=2;DP=4212;set=filterInvariant-filterInvariant2-filterInvariant8-filterInvariant11-variant13-variant16-variant17-variant18-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-filterInvariant33-filterInvariant34-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:169,111:280:99:3211,0,4299:77,92,38,73
chr1	16950470	.	C	T	467.23	PASS	AC=1;AF=0.5;AN=2;DP=4180;set=variant-variant5-filterInvariant9-filterInvariant11-filterInvariant12-variant13-variant14-variant15-variant18-filterInvariant20-variant21-filterInvariant22-filterInvariant25-filterInvariant26-filterInvariant31-filterInvariant35-filterInvariant37-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:196,34:230:99:256,0,5820:73,123,13,21
chr1	16953672	.	C	T	690.72	PASS	AC=1;AF=0.5;AN=2;DP=9689;set=variant2-filterInvariant3-variant4-variant6-filterInvariant7-filterInvariant9-variant10-filterInvariant12-filterInvariant13-variant14-variant19-variant20-variant23-filterInvariant24-filterInvariant25-variant28-variant29-filterInvariant30-variant32-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:390,69:459:99:822,0,10834:260,130,46,23
chr1	16953827	.	G	GC	503.83	PASS	AC=1;AF=0.5;AN=2;DP=15624;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant9-variant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant18-variant19-variant21-variant22-variant24-variant29-filterInvariant31-variant33-variant34-filterInvariant36-filterInvariant37-variant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:550,88:638:99:998,0,16956:230,320,27,61
chr1	16953881	.	C	G	2461.43	PASS	AC=1;AF=0.5;AN=2;DP=12528;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:192,139:331:99:3753,0,5973:56,136,36,103
chr1	16953889	.	G	C	502.34	PASS	AC=1;AF=0.5;AN=2;DP=9403;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant9-variant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant29-variant31-variant33-variant34-filterInvariant35-variant36-variant37-filterInvariant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:236,44:280:99:553,0,8891:60,176,14,30
chr1	16953957	.	G	A	322.69	PASS	AC=1;AF=0.5;AN=2;DP=1426;set=variant9-variant10-variant13-variant16-variant17-variant19-variant24-variant25-filterInvariant27-filterInvariant28-variant29-variant30-filterInvariant31-variant33-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,10:89:99:124,0,2929:6,73,1,9
chr1	16955070	.	C	A	71.51	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=276;FS=1.446;FractionInformativeReads=1;MQ=60;MQRankSum=0.371;QD=0.26;ReadPosRankSum=-3.817;SOR=0.844;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:242,34:276:99:100,0,6529:116,126,15,19
chr1	16955106	.	C	T	311.82	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=657;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:204,29:233:99:223,0,6144:94,110,13,16
chr1	16955128	.	A	G	323.58	PASS	AC=1;AF=0.5;AN=2;DP=5956;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-filterInvariant16-variant19-variant20-filterInvariant21-variant23-filterInvariant24-variant25-variant27-variant28-filterInvariant29-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-variant35-variant36-variant38-variant39-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:174,31:205:99:325,0,5225:76,98,15,16
chr1	16955256	.	C	T	34.59	PASS	AC=1;AF=0.5;AN=2;DP=439;FractionInformativeReads=1;set=filterInvariant26-filterInvariant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:111,19:130:99:228,0,3268:45,66,7,12
chr1	16955283	.	C	G	127.45	PASS	AC=1;AF=0.5;AN=2;DP=1287;set=variant2-variant9-filterInvariant10-variant12-variant13-variant16-variant17-variant18-filterInvariant19-variant25-variant29-variant30-variant33-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:93,17:110:99:206,0,2987:36,57,6,11
chr1	16955289	.	A	G	48.67	PASS	AC=1;AF=0.5;AN=2;DP=1929;MQ=60;set=variant-variant5-variant9-filterInvariant11-variant12-variant13-variant14-variant15-variant18-variant20-variant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant29-variant31-variant33-variant34-variant35-filterInvariant37-filterInvariant38-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:82,18:100:99:214,0,2623:31,51,9,9
chr1	16969381	.	C	T	2261.75	PASS	AC=1;AF=0.523;AN=2;DP=14454;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:70,318:388:99:9031,0,994:29,41,142,176
chr1	16969431	.	G	A	311.75	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=750;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:253,32:285:99:149,0,7771:107,146,15,17
chr1	16971948	.	C	G	56.64	PASS	AC=1;AF=0.5;AN=2;DP=6045;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,93:166:99:2798,0,1983:52,21,72,21
chr1	16972067	.	C	T	690.83	PASS	AC=1;AF=0.5;AN=2;DP=14829;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-filterInvariant9-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant18-filterInvariant19-filterInvariant20-variant21-variant22-variant25-filterInvariant26-variant27-filterInvariant28-filterInvariant30-variant31-variant32-filterInvariant34-filterInvariant35-filterInvariant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:290,193:483:99:4438,0,10764:139,151,108,85
chr1	16972068	.	A	G	2913.55	PASS	AC=1;AF=0.5;AN=2;DP=18980;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:232,252:484:99:9046,0,5190:104,128,143,109
chr1	16972134	.	C	T	210.67	PASS	AC=1;AF=0.5;AN=2;DP=11824;set=filterInvariant4-variant5-variant9-variant10-variant13-filterInvariant15-variant16-filterInvariant17-variant18-variant19-filterInvariant21-filterInvariant22-filterInvariant23-variant24-variant25-variant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-variant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant39-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:395,94:489:99:1435,0,9909:198,197,33,61
chr1	16972189	.	C	A	1198.01	PASS	AC=1;AF=0.5;AN=2;DP=5948;set=variant7-variant10-filterInvariant13-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:264,69:333:99:873,0,6981:106,158,34,35
chr1	16972920	.	C	T	3794.73	PASS	AC=1;AF=0.5;AN=2;DP=28313;set=variant2-variant3-variant4-variant6-filterInvariant7-variant9-variant10-variant12-variant13-variant14-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:846,240:1086:99:3790,0,30937:458,388,129,111
chr1	16972940	.	G	A	6661.85	PASS	AC=1;AF=0.513;AN=2;DP=41528;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:488,679:1167:99:16687,0,14925:253,235,356,323
chr1	16973009	.	C	T	2187.9	PASS	AC=1;AF=0.5;AN=2;DP=5577;set=variant12-variant13-variant18-filterInvariant22-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:757,160:917:99:2349,0,20888:338,419,66,94
chr1	16973152	.	A	G	2710.95	PASS	AC=1;AF=0.513;AN=2;DP=16123;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:193,296:489:99:8389,0,4932:97,96,153,143
chr1	16973184	.	G	A	2493.29	PASS	AC=1;AF=0.5;AN=2;DP=16940;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:238,271:509:99:6543,0,6894:141,97,149,122
chr1	16973251	.	C	T	1105.05	PASS	AC=1;AF=0.5;AN=2;DP=2259;set=variant12-variant13-variant18-filterInvariant22-filterInvariant33-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:349,66:415:99:688,0,9273:168,181,23,43
chr1	16973388	.	C	T	110.61	PASS	AC=1;AF=0.525;AN=2;DP=5866;set=filterInvariant3-filterInvariant4-variant5-filterInvariant9-filterInvariant10-variant11-variant15-filterInvariant16-filterInvariant19-variant21-filterInvariant26-variant34-variant35-filterInvariant36-filterInvariant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:178,58:236:99:1177,0,9347:88,90,25,33
chr1	16973400	.	G	A	227.7	PASS	AC=1;AF=0.522;AN=2;DP=6330;set=filterInvariant4-variant5-filterInvariant9-variant11-filterInvariant12-filterInvariant13-variant15-variant16-filterInvariant18-filterInvariant19-variant21-variant25-filterInvariant26-filterInvariant29-variant33-variant34-variant35-filterInvariant36-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:171,65:236:99:2105,0,4433:88,83,32,33
chr1	16973423	.	C	T	75.13	PASS	AC=1;AF=0.5;AN=2;DP=3306;set=filterInvariant-filterInvariant5-variant11-filterInvariant15-variant21-filterInvariant26-variant34-filterInvariant35-filterInvariant36-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,36:226:99:478,0,9764:106,84,22,14
chr1	16973606	.	G	T	834.65	PASS	AC=1;AF=0.5;AN=2;DP=38152;set=filterInvariant3-filterInvariant4-filterInvariant5-variant9-variant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-variant18-filterInvariant19-filterInvariant20-variant21-filterInvariant22-variant24-filterInvariant26-variant29-filterInvariant31-variant33-variant34-filterInvariant36-filterInvariant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:1009,341:1350:99:5218,0,24436:493,516,164,177
chr1	16973919	.	A	G	1701.58	PASS	AC=1;AF=0.5;AN=2;DP=40043;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:536,271:807:99:4337,0,11253:288,248,142,129
chr1	16973996	.	A	G	2704.38	PASS	AC=1;AF=0.5;AN=2;DP=25098;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:503,79:582:99:493,0,11689:199,304,25,54
chr1	16974010	.	G	C	1226.82	PASS	AC=1;AF=0.5;AN=2;DP=18974;set=filterInvariant-variant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:403,62:465:99:343,0,9988:150,253,19,43
chr1	16974021	.	G	A	2594.63	PASS	AC=1;AF=0.5;AN=2;DP=16953;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant7-variant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-filterInvariant31-variant34-filterInvariant35-variant36-variant37-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:187,186:373:99:3721,0,4565:58,129,74,112
chr1	16974243	.	G	C	209.6	PASS	AC=1;AF=0.5;AN=2;DP=3318;set=variant2-filterInvariant3-filterInvariant9-variant11-filterInvariant13-filterInvariant15-variant16-filterInvariant17-variant18-filterInvariant19-variant21-filterInvariant24-variant25-variant29-filterInvariant31-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant40-variant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:118,26:144:99:393,0,5287:107,11,26,0
chr1	16974256	.	G	C	2620.2	PASS	AC=1;AF=0.511;AN=2;DP=9597;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:90,132:222:99:4241,0,2432:69,21,130,2
chr1	16974455	.	G	T	1111.05	PASS	AC=1;AF=0.5;AN=2;DP=3845;set=filterInvariant12-variant13-filterInvariant18-filterInvariant22-filterInvariant33-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:485,70:555:99:487,0,14976:239,246,38,32
chr1	16974511	.	G	A	532.37	PASS	AC=1;AF=0.5;AN=2;DP=27099;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-filterInvariant35-variant36-filterInvariant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:376,311:687:99:7518,0,10089:212,164,161,150
chr1	16974637	.	T	C	4034.58	PASS	AC=1;AF=0.5;AN=2;DP=35195;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:721,160:881:99:2113,0,25407:349,372,57,103
chr1	16974662	.	C	A	3091.65	PASS	AC=1;AF=0.5;AN=2;DP=23683;set=variant5-variant9-variant10-variant12-variant13-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant27-filterInvariant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:448,318:766:99:9690,0,15521:200,248,134,184
chr1	16974666	.	C	T	2542.03	PASS	AC=1;AF=0.5;AN=2;DP=22851;set=variant-variant2-variant3-variant4-filterInvariant5-variant7-filterInvariant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-filterInvariant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:436,301:737:99:6090,0,15663:187,249,130,171
chr1	16974758	.	G	A	1248.58	PASS	AC=1;AF=0.514;AN=2;DP=8461;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:196,88:284:99:2639,0,5711:99,97,4,84
chr1	16974786	.	G	C	426.13	PASS	AC=1;AF=0.5;AN=2;DP=5939;set=filterInvariant-filterInvariant2-filterInvariant3-variant5-filterInvariant9-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant15-filterInvariant16-variant18-filterInvariant21-variant22-filterInvariant25-filterInvariant26-variant33-variant34-filterInvariant35-filterInvariant36-filterInvariant39-filterInvariant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:116,149:265:99:4217,0,3357:61,55,60,89
chr1	16974869	.	G	C	5080.64	PASS	AC=1;AF=0.571;AN=2;DP=15360;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:193,211:404:99:5220,0,4167:111,82,126,85
chr1	16974901	.	A	G	436.37	PASS	AC=1;AF=0.536;AN=2;DP=6271;set=filterInvariant11-variant12-variant13-variant15-filterInvariant16-variant18-variant21-variant22-variant33-variant34-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:277,228:505:99:5618,0,6654:155,122,143,85
chr1	16974915	.	C	T	354.63	PASS	AC=1;AF=0.529;AN=2;DP=7229;set=filterInvariant2-filterInvariant11-filterInvariant15-variant16-filterInvariant18-filterInvariant20-variant21-filterInvariant26-filterInvariant29-variant34-filterInvariant35-filterInvariant36-filterInvariant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:500,69:569:99:216,0,16680:267,233,48,21
chr1	16974972	.	C	T	802.72	PASS	AC=1;AF=0.519;AN=2;DP=18860;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-filterInvariant9-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant26-variant29-filterInvariant30-variant34-variant35-variant36-variant37-filterInvariant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:544,223:767:99:3920,0,13588:262,282,149,74
chr1	16975002	.	C	T	1585.79	PASS	AC=1;AF=0.513;AN=2;DP=28075;set=variant-variant2-variant3-variant4-variant5-variant7-filterInvariant9-filterInvariant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-filterInvariant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:304,484:788:99:12228,0,6974:133,171,268,216
chr1	16975084	.	G	A	920.06	PASS	AC=1;AF=0.5;AN=2;DP=14394;set=filterInvariant7-filterInvariant10-filterInvariant17-filterInvariant19-filterInvariant20-variant21-filterInvariant24-filterInvariant26-filterInvariant28-variant29-variant30-variant34-variant35-variant36-filterInvariant37-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:695,100:795:99:417,0,19976:357,338,53,47
chr1	16975093	.	C	T	1930.18	PASS	AC=1;AF=0.5;AN=2;DP=11160;set=variant2-variant6-variant7-variant9-variant12-variant13-variant14-filterInvariant22-filterInvariant23-variant25-variant28-filterInvariant30-filterInvariant31-filterInvariant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:643,143:786:99:2256,0,17910:345,298,55,88
chr1	16975187	.	A	G	196.17	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1008;FS=3.104;FractionInformativeReads=0.997;MQ=40.11;MQRankSum=-4.696;QD=0.19;ReadPosRankSum=1.576;SOR=0.903;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:892,113:1005:99:224,0,27965:474,418,49,64
chr1	16975202	.	T	C	5578.5	PASS	AC=1;AF=0.5;AN=2;DP=31112;set=variant2-filterInvariant3-filterInvariant4-variant5-variant7-variant9-variant10-filterInvariant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant21-variant22-filterInvariant23-variant24-variant25-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:384,579:963:99:15357,0,8137:197,187,276,303
chr1	16975230	.	G	C	5755.78	PASS	AC=2;AF=0.705;AN=2;DP=33096;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,840:840:99:27269,2519,0:0,0,390,450
chr1	16975626	.	G	C	38.17	PASS	AC=1;AF=0.5;AN=2;DP=1467;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant7-filterInvariant8-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant18-variant21-filterInvariant24-variant25-variant26-filterInvariant31-variant34-variant36-filterInvariant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:711,0,796:18,10,21,5
chr1	16975724	.	GC	G	455.51	PASS	AC=1;AF=0.5;AN=2;DP=6070;set=variant-variant2-variant3-variant4-variant5-filterInvariant7-filterInvariant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-filterInvariant23-variant24-variant25-variant26-filterInvariant27-variant30-variant31-variant34-variant35-variant36-variant37-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,102:204:99:3021,0,3007:64,38,63,39
chr1	16975868	.	T	A	479.95	PASS	AC=1;AF=0.516;AN=2;DP=4642;set=variant-variant2-variant3-variant4-variant5-filterInvariant7-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-filterInvariant23-filterInvariant24-variant25-variant26-filterInvariant27-filterInvariant30-filterInvariant31-variant34-filterInvariant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,76:148:99:1732,0,1924:23,49,24,52
chr1	16975912	.	CCCTGTT	C	62.36	PASS	AC=1;AF=0.5;AN=2;DP=1757;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant9-variant11-filterInvariant14-variant15-variant16-variant18-variant20-variant21-variant26-filterInvariant27-variant34-filterInvariant35-filterInvariant37-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,8:53:99:177,0,1843:19,26,0,8
chr1	16975994	.	T	C	97.74	PASS	AC=1;AF=0.516;AN=2;DP=3085;set=filterInvariant2-filterInvariant3-variant5-variant9-variant10-variant11-variant12-variant13-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-filterInvariant22-variant24-variant25-filterInvariant26-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,15:47:99:364,0,840:17,15,13,2
chr1	16976032	.	A	C	448.16	PASS	AC=1;AF=0.5;AN=2;DP=4400;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-filterInvariant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,36:90:99:1013,0,1342:34,20,19,17
chr1	16976193	.	C	T	99.19	PASS	AC=1;AF=0.515;AN=2;DP=5967;set=filterInvariant3-variant5-filterInvariant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-variant22-variant24-filterInvariant25-variant26-variant27-filterInvariant28-variant29-filterInvariant31-variant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:61,28:89:99:651,0,1711:35,26,5,23
chr1	16976451	.	G	A	289.52	PASS	AC=1;AF=0.625;AN=2;DP=158;set=variant13-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,11:51:99:307,0,1197:22,18,11,0
chr1	16976539	.	A	G	232.05	PASS	AC=1;AF=0.513;AN=2;DP=4751;set=variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,45:180:99:761,0,3476:85,50,33,12
chr1	16976569	.	G	A	380.55	PASS	AC=1;AF=0.5;AN=2;DP=8060;set=variant2-filterInvariant3-variant4-variant5-filterInvariant6-filterInvariant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant23-variant24-variant25-filterInvariant26-variant27-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant37-filterInvariant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:197,77:274:99:1313,0,5105:117,80,54,23
chr1	16976620	.	A	G	1072.56	PASS	AC=1;AF=0.5;AN=2;DP=7231;set=variant8-variant12-variant13-variant18-variant22-variant23-variant24-variant31-filterInvariant32-variant33-variant37-variant38-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:381,78:459:99:869,0,9451:206,175,39,39
chr1	16976641	.	C	T	48.8	PASS	AC=1;AF=0.5;AN=2;DP=22201;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-filterInvariant35-variant37-filterInvariant38-filterInvariant39-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:392,142:534:99:4612,0,15964:194,198,72,70
chr1	16976649	.	C	T	2947.95	PASS	AC=1;AF=0.5;AN=2;DP=20832;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11-filterInvariant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-filterInvariant22-variant24-variant25-variant27-filterInvariant28-filterInvariant29-filterInvariant31-filterInvariant32-variant33-variant34-variant35-variant37-filterInvariant38-variant39-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:404,147:551:99:4644,0,16227:194,210,74,73
chr1	16976679	.	G	A	1400.21	PASS	AC=1;AF=0.5;AN=2;DP=21684;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:345,125:470:99:2210,0,9425:149,196,63,62
chr1	16976681	.	G	T	799.96	PASS	AC=1;AF=0.5;AN=2;DP=16039;set=filterInvariant2-filterInvariant3-filterInvariant4-variant5-variant9-variant10-variant11-filterInvariant13-variant16-filterInvariant17-variant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-variant25-filterInvariant28-filterInvariant29-filterInvariant31-variant33-filterInvariant34-filterInvariant35-variant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:379,85:464:99:847,0,11028:168,211,42,43
chr1	16976772	.	G	T	226.95	PASS	AC=1;AF=0.5;AN=2;DP=3223;set=variant-filterInvariant5-filterInvariant7-filterInvariant9-variant10-filterInvariant13-filterInvariant14-variant15-filterInvariant17-variant18-variant19-variant20-variant21-variant26-filterInvariant27-variant29-variant30-variant34-variant35-filterInvariant36-filterInvariant37-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:113,19:132:99:116,0,3194:31,82,7,12
chr1	16976825	.	C	A	192.09	PASS	AC=1;AF=0.563;AN=2;DP=322;set=variant12-variant13-filterInvariant25-filterInvariant27-filterInvariant29-variant33-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:22,7:29:99:179,0,737:4,18,1,6
chr1	17017675	.	C	A	3900.56	PASS	AC=1;AF=0.524;AN=2;DP=17980;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:175,313:488:99:7751,0,3720:79,96,141,172
chr1	17017717	.	C	T	1147.63	PASS	AC=1;AF=0.5;AN=2;DP=10038;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:281,78:359:99:2126,0,11879:108,173,34,44
chr1	17017734	.	C	T	877.23	PASS	AC=1;AF=0.5;AN=2;DP=8029;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:228,64:292:99:1910,0,10737:83,145,26,38
chr1	17022952	.	C	A	11693.4	PASS	AC=2;AF=0.932;AN=2;DP=20684;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,469:469:99:13692,1397,0:0,0,256,213
chr1	17023110	.	G	A	405.18	PASS	AC=1;AF=0.5;AN=2;DP=19688;set=filterInvariant-variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant13-variant14-variant15-filterInvariant16-filterInvariant18-filterInvariant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-filterInvariant27-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant37-variant38-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:484,93:577:99:1054,0,13277:240,244,49,44
chr1	17023143	.	C	T	415.59	PASS	AC=1;AF=0.5;AN=2;DP=22679;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:459,94:553:99:1217,0,12736:224,235,50,44
chr1	17023182	.	C	G	6145.8	PASS	AC=1;AF=0.5;AN=2;DP=22464;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:230,300:530:99:8065,0,5823:121,109,153,147
chr1	17023267	.	C	T	2686.77	PASS	AC=1;AF=0.5;AN=2;DP=3787;set=variant12-variant13-filterInvariant18-variant22-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:563,143:706:99:2371,0,15664:314,249,79,64
chr1	17023376	.	C	T	2593.56	PASS	AC=1;AF=0.5;AN=2;DP=42153;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:928,228:1156:99:3725,0,25021:463,465,104,124
chr1	17023403	.	G	A	2594.41	PASS	AC=1;AF=0.5;AN=2;DP=32572;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant13-variant14-variant15-filterInvariant16-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-filterInvariant27-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:917,216:1133:99:3322,0,23840:434,483,91,125
chr1	17023483	.	C	T	1419.68	PASS	AC=1;AF=0.5;AN=2;DP=18766;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:477,118:595:99:1944,0,13047:172,305,37,81
chr1	17023509	.	T	C	1217.62	PASS	AC=1;AF=0.5;AN=2;DP=11889;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:306,68:374:99:1353,0,10282:81,225,15,53
chr1	17023511	.	C	A	13983.3	PASS	AC=1;AF=0.659;AN=2;DP=12692;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:140,217:357:99:6950,0,3794:34,106,53,164
chr1	17023569	.	T	C	5032.01	PASS	AC=1;AF=0.909;AN=2;DP=3717;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,90:111:99:3367,0,432:3,18,7,83
chr1	17025992	.	G	A	682.13	PASS	AC=1;AF=0.5;AN=2;DP=6791;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-filterInvariant25-variant26-variant27-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:199,44:243:99:681,0,6699:115,84,26,18
chr1	17026004	.	C	G	4742.66	PASS	AC=1;AF=0.524;AN=2;DP=9741;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:162,104:266:99:2361,0,4585:89,73,59,45
chr1	17026043	.	G	GGCGGCA,GGCA,GGCAGCAGCA	240.48	PASS	AC=0,1,0;AF=0.051,0.436,0.013;AN=2;DP=12430;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:315:99:132,123,33,27
chr1	17026087	.	G	A	2582.11	PASS	AC=1;AF=0.5;AN=2;DP=13055;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:256,78:334:99:1523,0,6854:122,134,41,37
chr1	17026551	.	G	C	893.59	PASS	AC=1;AF=0.5;AN=2;DP=17953;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:359,93:452:99:1500,0,9678:155,204,39,54
chr1	17029462	.	A	G	390.68	PASS	AC=1;AF=0.5;AN=2;DP=5548;set=filterInvariant2-variant3-variant4-variant5-variant9-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant18-filterInvariant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-variant31-variant32-variant33-filterInvariant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:159,40:199:99:554,0,3798:92,67,24,16
chr1	17029513	.	C	G	2233.74	PASS	AC=1;AF=0.563;AN=2;DP=7022;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,107:193:99:2419,0,1921:42,44,56,51
chr1	17029560	.	G	A	256.53	PASS	AC=1;AF=0.5;AN=2;DP=121;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.48;QD=2.12;ReadPosRankSum=-0.689;SOR=0.577;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,22:121:99:285,0,2865:34,65,8,14
chr1	17030325	.	A	G	2257.9	PASS	AC=1;AF=0.583;AN=2;DP=3569;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,56:95:99:1713,0,912:28,11,37,19
chr1	17030336	.	C	T	1046.55	PASS	AC=1;AF=0.5;AN=2;DP=3347;MQ=60;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,25:112:99:438,0,3645:62,25,17,8
chr1	17030418	.	T	C	1219.39	PASS	AC=1;AF=0.5;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:142,53:195:99:1248,0,3842:83,59,34,19
chr1	17030504	.	T	A	2786.23	PASS	AC=1;AF=0.5;AN=2;DP=11266;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:195,112:307:99:4119,0,7955:105,90,59,53
chr1	17030515	.	G	A	3138.57	PASS	AC=1;AF=0.5;AN=2;DP=12237;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:216,122:338:99:4613,0,9002:118,98,68,54
chr1	17030518	.	C	T	3210.33	PASS	AC=1;AF=0.5;AN=2;DP=12496;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:219,125:344:99:4696,0,9020:118,101,70,55
chr1	17030519	.	T	G	3216.35	PASS	AC=1;AF=0.5;AN=2;DP=12620;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:221,126:347:99:4660,0,8939:119,102,71,55
chr1	17030544	.	C	T	2093.28	PASS	AC=1;AF=0.5;AN=2;DP=2420;MQ=60;set=variant12-variant13-filterInvariant18-variant22-filterInvariant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:323,71:394:99:1155,0,11650:168,155,40,31
chr1	17030590	.	G	A	2458.17	PASS	AC=1;AF=0.5;AN=2;DP=15584;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant24-filterInvariant25-filterInvariant26-variant27-variant29-variant31-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:269,163:432:99:3570,0,6566:131,138,83,80
chr1	17030716	.	G	A	1940.21	PASS	AC=1;AF=0.5;AN=2;DP=5500;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:150,29:179:99:286,0,4314:45,105,13,16
chr1	17030729	.	C	T	923.14	PASS	AC=1;AF=0.5;AN=2;DP=4093;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-filterInvariant26-filterInvariant27-variant29-filterInvariant31-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,31:154:99:614,0,3375:42,81,7,24
chr1	17033758	.	A	G	7140.75	PASS	AC=1;AF=0.512;AN=2;DP=15223;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:149,254:403:99:6876,0,3522:94,55,151,103
chr1	17033805	.	C	T	5734.92	PASS	AC=1;AF=0.5;AN=2;DP=18201;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:484,122:606:99:1730,0,12985:285,199,67,55
chr1	17033854	.	C	T	12121.9	PASS	AC=1;AF=0.5;AN=2;DP=29014;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:287,437:724:99:10571,0,6333:149,138,226,211
chr1	17034041	.	T	C	14198.5	PASS	AC=1;AF=0.693;AN=2;DP=15527;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:128,247:375:99:6849,0,3031:61,67,113,134
chr1	17034125	.	C	CAGCT	5556.62	PASS	AC=1;AF=0.5;AN=2;DP=9986;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:254,57:311:99:1591,0,10377:118,136,24,33
chr1	17034167	.	G	A	511.72	PASS	AC=1;AF=0.5;AN=2;DP=5587;set=variant-variant2-variant3-variant4-filterInvariant7-variant9-filterInvariant10-filterInvariant11-variant12-variant13-variant16-variant18-filterInvariant21-variant22-variant24-variant25-variant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant35-variant36-variant38-variant39-variant40-variant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:173,39:212:99:539,0,5046:73,100,15,24
chr1	17034250	.	C	G	755.61	PASS	AC=1;AF=0.561;AN=2;DP=2078;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,12:45:99:315,0,1168:22,11,9,3
chr1	17034268	.	G	A	222.21	PASS	AC=1;AF=0.5;AN=2;DP=1318;set=variant-variant5-variant6-variant8-variant10-filterInvariant11-variant14-filterInvariant17-variant19-variant20-filterInvariant21-variant26-filterInvariant27-variant29-variant35-filterInvariant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,14:70:99:289,0,1959:43,13,10,4
chr1	17034455	.	CGCGCGCGT	C	1366.12	PASS	AC=1;AF=0.5;AN=2;DP=14834;set=variant-variant2-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:441,72:513:99:1647,0,28117:226,215,34,38
chr1	17044433	.	C	T	81.08	PASS	AC=1;AF=0.5;AN=2;DP=1151;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant26-variant27-variant29-filterInvariant31-variant34-variant35-variant36-variant37-variant38-variant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,8:41:99:189,0,1187:27,6,5,3
chr1	17044457	.	G	C	793.85	PASS	AC=1;AF=0.875;AN=2;DP=2664;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,46:64:99:1543,0,513:15,3,33,13
chr1	17044511	.	T	C	2005.33	PASS	AC=1;AF=0.583;AN=2;DP=6442;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,112:149:99:3119,0,613:25,12,69,43
chr1	17044589	.	G	A	155.14	PASS	AC=1;AF=0.514;AN=2;DP=11031;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:233,46:279:99:543,0,6133:120,113,25,21
chr1	17044662	.	G	C	435.09	PASS	AC=1;AF=0.5;AN=2;DP=7400;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-filterInvariant27-variant31-variant32-variant33-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:194,47:241:99:696,0,5096:87,107,19,28
chr1	17046361	.	A	T	1766.84	PASS	AC=1;AF=0.5;AN=2;DP=5813;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,29:160:99:473,0,4038:99,32,22,7
chr1	17046456	.	T	C	5225.26	PASS	AC=1;AF=0.5;AN=2;DP=17844;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:394,85:479:99:1315,0,11784:242,152,53,32
chr1	17046549	.	G	A	4332.86	PASS	AC=1;AF=0.513;AN=2;DP=29686;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:620,141:761:99:1713,0,16035:318,302,69,72
chr1	17046595	.	T	C	7070.5	PASS	AC=1;AF=0.5;AN=2;DP=28024;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:570,129:699:99:1835,0,15126:249,321,60,69
chr1	17046613	.	C	T	14940.8	PASS	AC=1;AF=0.524;AN=2;DP=25768;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:258,344:602:99:8730,0,6102:110,148,138,206
chr1	17046698	.	C	G	1268.91	PASS	AC=1;AF=0.5;AN=2;DP=7980;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-filterInvariant27-variant28-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:174,43:217:99:725,0,5082:47,127,15,28
chr1	17083652	.	C	T	82.17	PASS	AC=1;AF=0.5;AN=2;DP=2934;set=filterInvariant3-variant5-variant9-variant10-filterInvariant11-filterInvariant13-filterInvariant15-variant16-filterInvariant18-filterInvariant19-filterInvariant22-variant24-variant25-filterInvariant27-variant29-variant31-filterInvariant32-variant33-filterInvariant34-filterInvariant36-filterInvariant37-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:78,26:104:99:344,0,2080:51,27,14,12
chr1	17083714	.	G	A	92.9	PASS	AC=1;AF=0.5;AN=2;DP=285;FractionInformativeReads=1;set=filterInvariant14-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:115,18:133:99:113,0,2734:61,54,10,8
chr1	17083807	.	T	C	306.73	PASS	AC=1;AF=0.658;AN=2;DP=3381;set=variant-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-filterInvariant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,28:121:99:650,0,1961:47,46,7,21
chr1	17083837	.	T	C	839.19	PASS	AC=1;AF=0.538;AN=2;DP=1657;set=variant-variant5-variant6-variant8-variant11-filterInvariant15-variant17-variant21-filterInvariant24-variant26-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,79:106:99:1734,0,512:10,17,35,44
chr1	17083919	.	G	A	178.89	PASS	AC=1;AF=0.524;AN=2;DP=1253;set=variant-variant3-filterInvariant6-variant8-variant11-variant12-variant13-variant15-variant16-variant18-variant22-variant23-variant24-variant27-variant28-variant30-variant34-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:714,0,913:14,10,11,20
chr1	17083929	.	A	C	95.05	PASS	AC=1;AF=0.548;AN=2;DP=921;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant26-filterInvariant27-variant28-variant29-filterInvariant33-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,21:49:99:1016,0,684:18,10,6,15
chr1	17084006	.	C	T	725.92	PASS	AC=1;AF=0.5;AN=2;DP=7200;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-variant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-variant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-variant39-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,129:227:99:3236,0,2408:80,18,107,22
chr1	17084361	.	A	G	132.8	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=475;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:288,31:319:75:75,0,8655:136,152,4,27
chr1	17084510	.	G	A	190.97	PASS	AC=1;AF=0.5;AN=2;DP=5255;set=variant-variant2-variant3-variant4-variant5-variant7-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant18-filterInvariant19-variant21-variant22-filterInvariant25-variant26-filterInvariant27-filterInvariant30-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,62:186:99:1382,0,3387:51,73,19,43
chr1	17084536	.	TGGAACA	T	274.23	PASS	AC=1;AF=0.5;AN=2;DP=5563;set=variant-variant2-variant3-variant4-variant5-variant7-filterInvariant8-filterInvariant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-filterInvariant19-variant21-variant22-variant26-variant27-filterInvariant30-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,40:164:99:1289,0,5842:56,68,6,34
chr1	17084589	.	A	T	328.84	PASS	AC=1;AF=0.5;AN=2;DP=1541;set=variant3-variant11-variant15-filterInvariant18-filterInvariant37-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:118,21:139:99:370,0,3010:56,62,2,19
chr1	17084755	.	T	C	353.26	PASS	AC=2;AF=0.597;AN=2;DP=2062;set=variant-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-filterInvariant18-variant19-filterInvariant20-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant33-variant34-variant35-variant36-variant37-filterInvariant38-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1234,132,0:0,0,13,31
chr1	17084815	.	G	A	324.96	PASS	AC=1;AF=0.545;AN=2;DP=1609;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:148,0,279:10,0,2,5
chr1	17084831	.	C	G	99.16	PASS	AC=1;AF=0.5;AN=2;DP=757;FractionInformativeReads=1;set=variant3-filterInvariant4-variant7-variant11-variant13-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant21-filterInvariant30-variant34-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:497,0,609:19,3,17,0
chr1	17084948	.	A	C	761.89	PASS	AC=1;AF=0.5;AN=2;DP=13778;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-filterInvariant9-variant11-filterInvariant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant28-filterInvariant29-variant30-variant34-variant35-variant36-variant37-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:269,158:427:99:3398,0,7025:190,79,106,52
chr1	17084968	.	G	C	2030.43	PASS	AC=1;AF=0.5;AN=2;DP=20741;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:434,129:563:99:2275,0,10642:269,165,84,45
chr1	17085046	.	C	G	1050.68	PASS	AC=1;AF=0.5;AN=2;DP=1568;set=variant12-variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:595,139:734:99:1556,0,14069:253,342,61,78
chr1	17085165	.	G	C,T	1891.84	PASS	AC=1,1;AF=0.864,0.125;AN=2;DP=3457;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-filterInvariant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:DP:GQ:SB	1/2:55:99:0,0,13,42
chr1	17085255	.	A	G	2348.32	PASS	AC=1;AF=0.543;AN=2;DP=3263;set=variant-filterInvariant2-variant6-variant8-variant9-filterInvariant10-variant11-variant15-filterInvariant16-variant17-variant21-variant24-variant25-variant26-variant27-variant29-variant30-filterInvariant31-variant32-variant34-filterInvariant35-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,8:29:99:168,0,604:16,5,6,2
chr1	17085265	.	T	C	452.98	PASS	AC=2;AF=0.661;AN=2;DP=3163;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant7-variant9-filterInvariant10-variant11-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant20-variant21-variant25-variant26-variant29-filterInvariant30-filterInvariant31-variant32-filterInvariant34-filterInvariant35-variant36-variant37-variant38-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:75:1110,75,0:0,0,23,1
chr1	17085267	.	A	G	452.98	PASS	AC=2;AF=0.661;AN=2;DP=3246;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant7-variant9-filterInvariant10-variant11-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant20-variant21-variant25-filterInvariant26-variant29-filterInvariant30-filterInvariant31-variant32-filterInvariant34-filterInvariant35-variant36-variant37-variant38-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1110,75,0:0,0,24,1
chr1	17085412	.	C	T	3609.81	PASS	AC=1;AF=0.5;AN=2;DP=44576;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:698,368:1066:99:13478,0,28720:433,265,241,127
chr1	17085427	.	T	C	8636.79	PASS	AC=1;AF=0.5;AN=2;DP=51112;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:847,448:1295:99:14559,0,31824:513,334,279,169
chr1	17085502	.	T	C	16196	PASS	AC=1;AF=0.5;AN=2;DP=54761;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:820,622:1442:99:15126,0,18520:421,399,308,314
chr1	17085542	.	G	A	1224.3	PASS	AC=1;AF=0.5;AN=2;DP=37775;set=filterInvariant2-variant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-variant9-variant10-filterInvariant12-variant16-variant17-variant19-filterInvariant20-filterInvariant22-variant23-variant24-variant25-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:922,353:1275:99:6124,0,33334:419,503,191,162
chr1	17085564	.	A	G	8043.65	PASS	AC=1;AF=0.5;AN=2;DP=42874;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:700,395:1095:99:12818,0,20759:291,409,197,198
chr1	17085589	.	A	C	3159.4	PASS	AC=1;AF=0.5;AN=2;DP=4571;set=variant12-variant14-variant22-variant33-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:768,147:915:99:1799,0,25485:335,433,53,94
chr1	17085671	.	C	G	5784.23	PASS	AC=1;AF=0.5;AN=2;DP=31784;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:465,321:786:99:9574,0,12393:181,284,136,185
chr1	17085677	.	G	A	1534.5	PASS	AC=1;AF=0.5;AN=2;DP=28718;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-filterInvariant12-variant13-filterInvariant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:579,197:776:99:3412,0,21334:237,342,78,119
chr1	17085712	.	C	G,T	178.02	PASS	AC=0,1;AF=0.013,0.488;AN=2;DP=25661;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:697:99:221,283,60,133
chr1	17085743	.	G	A	743.06	PASS	AC=1;AF=0.5;AN=2;DP=3154;set=filterInvariant12-filterInvariant14-filterInvariant22-filterInvariant33-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:546,80:626:99:452,0,15739:213,333,44,36
chr1	17085795	.	G	T	341.36	PASS	AC=1;AF=0.5;AN=2;DP=12829;set=filterInvariant5-variant9-variant10-variant13-variant18-variant19-filterInvariant22-variant23-variant24-variant25-variant27-variant28-variant29-filterInvariant31-filterInvariant32-variant33-filterInvariant34-filterInvariant35-filterInvariant36-variant38-filterInvariant39-filterInvariant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:473,66:539:99:315,0,12962:236,237,16,50
chr1	17085834	.	G	T	5877.73	PASS	AC=2;AF=0.807;AN=2;DP=18352;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,434:434:99:13426,1321,0:0,0,210,224
chr1	17085908	.	C	G	1602.37	PASS	AC=1;AF=0.521;AN=2;DP=7488;set=variant-variant5-filterInvariant6-variant8-filterInvariant9-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-filterInvariant31-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:259,72:331:99:1051,0,6706:96,163,27,45
chr1	17085999	.	CCCCG	C	338.9	PASS	AC=1;AF=0.5;AN=2;DP=1498;set=variant6-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant26-variant30-filterInvariant31-variant32-variant34-variant35-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,10:39:99:333,0,1137:4,25,0,10
chr1	17086052	.	T	C	161.06	PASS	AC=2;AF=1;AN=2;DP=1498;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:435,39,0:0,0,2,11
chr1	17086085	.	G	GC	105.13	PASS	AC=2;AF=0.861;AN=2;DP=297;set=variant3-variant4-variant5-variant6-variant9-filterInvariant11-variant14-variant16-variant19-variant21-variant22-variant24-filterInvariant31-variant33-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:142,12,0:0,0,2,2
chr1	17086236	.	G	C	174.28	PASS	AC=1;AF=0.5;AN=2;DP=1661;set=filterInvariant-filterInvariant5-filterInvariant6-filterInvariant9-filterInvariant10-filterInvariant14-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant29-variant31-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:60,17:77:99:198,0,1320:26,34,8,9
chr1	17086450	.	C	G	211.68	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=395;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:13,4:17:60:60,0,380:4,9,1,3
chr1	17086651	.	C	T	140.26	DRAGENHardSNP	AC=1;AF=0.6;AN=2;DP=69;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:1,9:10:10:273,0,10:1,0,9,0
chr1	17087244	.	AC	A	3814.71	PASS	AC=1;AF=0.5;AN=2;DP=16616;set=variant-variant5-filterInvariant6-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:412,137:549:99:2804,0,12090:211,201,65,72
chr1	17087292	.	A	G	633.47	PASS	AC=1;AF=0.5;AN=2;DP=22999;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant9-variant10-variant11-filterInvariant12-filterInvariant13-variant16-filterInvariant17-filterInvariant18-variant19-variant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-variant29-filterInvariant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-variant39-variant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:565,69:634:99:1341,0,23272:252,313,60,9
chr1	17087299	.	T	C	5785.07	PASS	AC=1;AF=0.5;AN=2;DP=26797;set=variant-filterInvariant3-filterInvariant4-filterInvariant5-variant6-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-variant39-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:561,80:641:99:1886,0,23499:250,311,68,12
chr1	17087305	.	G	C	1321.83	PASS	AC=1;AF=0.5;AN=2;DP=27470;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-variant9-variant10-variant11-filterInvariant12-variant13-filterInvariant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-filterInvariant26-variant27-filterInvariant28-variant29-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:545,95:640:99:2171,0,22455:248,297,76,19
chr1	17087348	.	C	G	2133.24	PASS	AC=1;AF=0.5;AN=2;DP=687;FS=2.394;FractionInformativeReads=0.997;MQ=56.55;MQRankSum=-2.714;QD=3.11;ReadPosRankSum=-1.243;SOR=0.493;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:561,124:685:99:2161,0,20154:334,227,67,57
chr1	17087365	.	C	G	7328.19	PASS	AC=1;AF=0.511;AN=2;DP=34433;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:383,354:737:99:9914,0,11977:228,155,223,131
chr1	17087432	.	G	T	1137.77	PASS	AC=1;AF=0.5;AN=2;DP=25037;set=filterInvariant-variant2-variant3-variant4-variant11-variant12-filterInvariant13-variant16-filterInvariant18-filterInvariant21-variant22-filterInvariant24-filterInvariant26-filterInvariant32-variant33-variant36-filterInvariant37-filterInvariant38-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:1101,207:1308:99:2273,0,30245:628,473,114,93
chr1	17087465	.	G	A	1275.79	PASS	AC=1;AF=0.5;AN=2;DP=67839;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:885,660:1545:99:14190,0,22126:464,421,348,312
chr1	17087541	.	GGTGCT	G	10847.3	PASS	AC=1;AF=0.5;AN=2;DP=78083;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:978,684:1662:99:25411,0,38620:460,518,306,378
chr1	17087582	.	G	A	12021.1	PASS	AC=1;AF=0.5;AN=2;DP=62467;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:808,543:1351:99:12570,0,20761:346,462,223,320
chr1	17090902	.	A	AT	34.39	PASS	AC=1;AF=0.5;AN=2;DP=3974;set=filterInvariant-variant2-variant3-filterInvariant5-filterInvariant9-variant10-variant11-filterInvariant12-variant13-filterInvariant16-variant18-variant20-filterInvariant24-filterInvariant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant34-filterInvariant35-variant37-filterInvariant38-variant39-variant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:114,36:150:99:827,0,3590:71,43,18,18
chr1	17197563	.	G	T	3422.53	PASS	AC=1;AF=0.511;AN=2;DP=12451;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:155,128:283:99:3878,0,3744:83,72,86,42
chr1	17197571	.	G	A	585.5	PASS	AC=1;AF=0.5;AN=2;DP=13564;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:238,71:309:99:1652,0,9310:132,106,54,17
chr1	17197595	.	A	C	795.33	PASS	AC=1;AF=0.5;AN=2;DP=16079;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:259,106:365:99:2458,0,6397:138,121,71,35
chr1	17197609	.	T	C	884.83	PASS	AC=1;AF=0.5;AN=2;DP=17002;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:277,136:413:99:4995,0,12821:140,137,86,50
chr1	17197615	.	C	A	854.81	PASS	AC=1;AF=0.5;AN=2;DP=17214;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:269,144:413:99:5334,0,12739:133,136,89,55
chr1	17197619	.	A	G	857.66	PASS	AC=1;AF=0.5;AN=2;DP=17252;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:264,152:416:99:5450,0,12533:128,136,94,58
chr1	17197685	.	G	A	1409.07	PASS	AC=1;AF=0.5;AN=2;DP=7036;set=variant5-variant8-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant25-variant27-filterInvariant28-variant29-filterInvariant33-variant34-variant36-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:302,51:353:99:356,0,10710:138,164,20,31
chr1	17197690	.	T	G	718.7	PASS	AC=1;AF=0.5;AN=2;DP=13678;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:162,178:340:99:6797,0,6323:63,99,86,92
chr1	17197694	.	G	A	667.42	PASS	AC=1;AF=0.5;AN=2;DP=13199;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:157,175:332:99:6794,0,6141:60,97,84,91
chr1	17197710	.	G	C	520.04	PASS	AC=1;AF=0.5;AN=2;DP=11298;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:141,152:293:99:5725,0,5216:51,90,67,85
chr1	17197715	.	G	A	541.82	PASS	AC=1;AF=0.5;AN=2;DP=10737;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:129,143:272:99:5757,0,5075:44,85,60,83
chr1	17197724	.	C	G	448.16	PASS	AC=1;AF=0.5;AN=2;DP=6142;set=variant-filterInvariant2-variant3-variant4-variant5-variant9-variant10-variant11-variant16-variant17-variant18-variant20-filterInvariant21-filterInvariant24-variant25-variant26-filterInvariant27-variant28-variant29-variant33-filterInvariant34-variant36-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:199,43:242:99:596,0,7467:68,131,12,31
chr1	17197725	.	C	G	193.59	PASS	AC=1;AF=0.5;AN=2;DP=8613;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:145,86:231:99:1927,0,5370:42,103,33,53
chr1	17197758	.	C	G	355.1	PASS	AC=1;AF=0.5;AN=2;DP=5775;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:68,85:153:99:3329,0,2620:15,53,26,59
chr1	17197764	.	G	A,C	303.47	PASS	AC=1,0;AF=0.402,0.098;AN=2;DP=4789;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:142:99:15,50,24,53
chr1	17197771	.	G	A	331.31	PASS	AC=1;AF=0.5;AN=2;DP=4571;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:61,64:125:99:2789,0,2512:11,50,14,50
chr1	17197777	.	T	G	214.37	PASS	AC=1;AF=0.5;AN=2;DP=4083;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,58:112:99:2323,0,2304:8,46,12,46
chr1	17197779	.	G	A	223.4	PASS	AC=1;AF=0.5;AN=2;DP=3837;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,55:108:99:2293,0,2139:8,45,11,44
chr1	17197798	.	A	G	122.32	PASS	AC=1;AF=0.5;AN=2;DP=2488;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:1036,0,1024:3,28,2,29
chr1	17197801	.	C	G	172.1	PASS	AC=1;AF=0.5;AN=2;DP=1443;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant7-variant9-filterInvariant10-filterInvariant11-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant36-variant39-variant40-filterInvariant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,8:55:99:118,0,1922:5,42,0,8
chr1	17197817	.	C	A	109.62	PASS	AC=1;AF=0.5;AN=2;DP=1840;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:28,17:45:99:630,0,1125:5,23,2,15
chr1	17197818	.	C	G	112.63	PASS	AC=1;AF=0.5;AN=2;DP=1821;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:28,17:45:99:630,0,1125:5,23,2,15
chr1	17198518	.	T	G	168.67	PASS	AC=2;AF=0.95;AN=2;DP=101;FractionInformativeReads=1;set=filterInvariant-filterInvariant3-variant4-filterInvariant5-variant7-filterInvariant9-filterInvariant12-variant16-variant17-filterInvariant19-filterInvariant21-variant22-variant27-filterInvariant32-filterInvariant35-variant36-filterInvariant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:110,9,0:0,0,1,2
chr1	17248500	.	A	G	5266.57	PASS	AC=1;AF=0.581;AN=2;DP=14037;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,221:319:99:5998,0,1965:63,35,143,78
chr1	17248532	.	A	G	16093	PASS	AC=2;AF=1;AN=2;DP=19294;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,407:407:99:12233,1219,0:0,0,237,170
chr1	17249128	.	C	T	4236.34	PASS	AC=1;AF=0.5;AN=2;DP=2730;FractionInformativeReads=1;MQ=60;set=variant11-variant15-filterInvariant17-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:212,90:302:99:3021,0,10328:131,81,55,35
chr1	17249138	.	C	A	4199.79	PASS	AC=1;AF=0.5;AN=2;DP=3063;FractionInformativeReads=1;MQ=60;set=variant11-variant15-filterInvariant17-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:243,95:338:99:3113,0,10922:147,96,56,39
chr1	17249395	.	A	G	1910.57	PASS	AC=2;AF=0.739;AN=2;DP=4324;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3670,324,0:0,0,25,83
chr1	17250573	.	T	C	283.05	PASS	AC=2;AF=0.963;AN=2;DP=453;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:229,18,0:0,0,4,2
chr1	17250762	.	G	C	1171.56	PASS	AC=1;AF=0.5;AN=2;DP=3026;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,25:84:99:561,0,1549:34,25,15,10
chr1	17250836	.	A	G	2268.44	PASS	AC=1;AF=0.5;AN=2;DP=4517;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,46:122:99:1078,0,2062:45,31,26,20
chr1	17250991	.	T	C	1625.05	PASS	AC=1;AF=0.5;AN=2;DP=2741;MQ=60;set=variant-variant8-variant11-variant15-variant17-variant18-variant21-variant27-variant30-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:98,49:147:99:1171,0,2611:47,51,24,25
chr1	17251055	.	C	T	2247.32	PASS	AC=1;AF=0.581;AN=2;DP=5606;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,72:112:99:2108,0,1454:18,22,32,40
chr1	17251056	.	G	A	719.99	PASS	AC=1;AF=0.5;AN=2;DP=1167;MQ=60;set=variant11-variant15-variant17-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:71,40:111:99:963,0,2874:32,39,18,22
chr1	17256313	.	G	A	266	PASS	AC=1;AF=0.5;AN=2;DP=1378;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:284,0,396:11,2,8,5
chr1	17257187	.	G	GTCCGAGGGAGCACTC	298.29	PASS	AC=1;AF=0.5;AN=2;DP=1534;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:525,0,2776:9,12,2,12
chr1	17262942	.	G	T	85.54	PASS	AC=1;AF=0.5;AN=2;DP=673;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:162,0,1657:12,3,5,0
chr1	17262944	.	A	G	124.3	PASS	AC=1;AF=0.5;AN=2;DP=694;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,5:21:99:159,0,1700:13,3,5,0
chr1	17262953	.	A	G	195.86	PASS	AC=1;AF=0.5;AN=2;DP=829;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-filterInvariant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,6:30:99:180,0,1894:19,5,6,0
chr1	17263255	.	G	A	618.41	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=0.822;FractionInformativeReads=1;MQ=60;MQRankSum=-0.095;QD=6.25;ReadPosRankSum=0.735;SOR=0.802;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:69,30:99:99:647,0,2066:35,34,14,16
chr1	17264920	.	C	T	606.24	PASS	AC=1;AF=0.5;AN=2;DP=1876;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant18-filterInvariant19-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,25:61:99:548,0,1019:24,12,14,11
chr1	17264939	.	T	C	608.12	PASS	AC=1;AF=0.5;AN=2;DP=2386;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,31:75:99:701,0,1066:27,17,17,14
chr1	17265171	.	A	G	111.02	PASS	AC=1;AF=0.514;AN=2;DP=2616;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,22:61:99:522,0,1047:18,21,12,10
chr1	17265327	.	A	G	332.97	PASS	AC=1;AF=0.5;AN=2;DP=6879;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,59:171:99:1109,0,2667:60,52,32,27
chr1	17265366	.	C	G	650.96	PASS	AC=1;AF=0.5;AN=2;DP=7367;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:138,80:218:99:1603,0,3421:71,67,40,40
chr1	17265560	.	C	T	264.92	PASS	AC=1;AF=0.5;AN=2;DP=1840;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,21:59:99:410,0,915:15,23,7,14
chr1	17266608	.	TG	T	1638.97	PASS	AC=1;AF=0.5;AN=2;DP=1893;set=variant11-variant15-variant17-variant18-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:113,58:171:99:2112,0,5636:49,64,24,34
chr1	17266616	.	A	G	1644.91	PASS	AC=1;AF=0.5;AN=2;DP=1690;FractionInformativeReads=1;set=variant11-variant15-variant17-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:111,60:171:99:2133,0,5633:47,64,24,36
chr1	17267302	.	A	G	143.28	PASS	AC=1;AF=0.5;AN=2;DP=2281;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:545,0,817:18,18,15,11
chr1	17267496	.	C	T	36.23	PASS	AC=1;AF=0.5;AN=2;DP=497;set=filterInvariant3-variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant29-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:301,0,355:1,10,4,8
chr1	17270498	.	T	G	1211.52	PASS	AC=1;AF=0.5;AN=2;DP=2784;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,28:94:99:653,0,1635:39,27,19,9
chr1	17270845	.	C	CG	1363.96	PASS	AC=1;AF=0.5;AN=2;DP=2863;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,36:56:99:1245,0,617:5,15,13,23
chr1	17273493	.	A	C	1209.71	PASS	AC=1;AF=0.514;AN=2;DP=4121;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,36:91:99:771,0,1449:21,34,16,20
chr1	17275054	.	G	C	141.78	PASS	AC=1;AF=0.5;AN=2;DP=1451;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,6:39:99:150,0,1021:10,23,0,6
chr1	17281003	.	T	C	1167.54	PASS	AC=2;AF=0.767;AN=2;DP=1712;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1348,126,0:0,0,14,28
chr1	17294654	.	G	A	205.77	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.409;QD=8.95;ReadPosRankSum=-2.236;SOR=0.743;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:234,0,338:9,5,6,3
chr1	17294685	.	A	G	295.08	PASS	AC=1;AF=0.5;AN=2;DP=92;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:194,0,344:8,8,5,4
chr1	17295679	.	T	C	5743.89	PASS	AC=2;AF=0.864;AN=2;DP=7385;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4196,408,0:0,0,61,75
chr1	17295764	.	A	G	1189.94	PASS	AC=1;AF=0.5;AN=2;DP=382;MQ=60;set=variant9-variant12-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,44:69:99:1187,0,642:6,19,15,29
chr1	17296722	.	C	T	1749.24	PASS	AC=1;AF=0.5;AN=2;DP=155;FS=0.591;FractionInformativeReads=0.994;MQ=60;MQRankSum=-0.708;QD=11.29;ReadPosRankSum=-2.421;SOR=0.756;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:82,72:154:99:1777,0,1979:40,42,34,38
chr1	17297118	.	C	G	896.99	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=2.097;FractionInformativeReads=1;MQ=60;MQRankSum=-0.672;QD=13.8;ReadPosRankSum=-0.978;SOR=0.632;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,38:65:99:925,0,560:12,15,20,18
chr1	17297289	.	C	T	328.65	PASS	AC=1;AF=0.768;AN=2;DP=670;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:85:85,0,260:2,8,3,1
chr1	17298247	.	C	T	866.97	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=1.032;FractionInformativeReads=1;MQ=60;MQRankSum=0.314;QD=15.21;ReadPosRankSum=3.626;SOR=0.882;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,25:57:99:895,0,1554:13,19,9,16
chr1	17298254	.	G	A	712.24	PASS	AC=1;AF=0.5;AN=2;DP=228;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:878,0,1465:9,17,7,16
chr1	17298680	.	C	T	348.41	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=2.663;FractionInformativeReads=1;MQ=60;MQRankSum=-0.113;QD=21.78;ReadPosRankSum=0.793;SOR=1.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:377,0,111:4,1,10,1
chr1	17298726	.	C	T	771.19	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=1.476;FractionInformativeReads=1;MQ=60;MQRankSum=0.686;QD=16.07;ReadPosRankSum=-0.249;SOR=0.363;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:799,0,608:18,3,21,6
chr1	17298751	.	T	C	1030.47	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=4.913;FractionInformativeReads=1;MQ=60;MQRankSum=-1.329;QD=13.74;ReadPosRankSum=-1.286;SOR=0.313;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,42:75:99:1059,0,909:25,8,27,15
chr1	17299006	.	G	GC,GCC	150.56	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=72;FS=0;MQ=60;set=variant18-variant41	GT:DP:GQ:SB	0/2:36:99:9,11,7,9
chr1	17299014	.	A	C	1770.26	PASS	AC=2;AF=0.898;AN=2;DP=2468;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,41:42:99:1496,114,0:1,0,17,24
chr1	17299127	.	C	T	1414.02	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=1.936;FractionInformativeReads=1;MQ=60;MQRankSum=-2.389;QD=19.11;ReadPosRankSum=1.373;SOR=0.429;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,37:74:99:1442,0,1895:22,15,19,18
chr1	17299128	.	A	G	1414.02	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=1.936;FractionInformativeReads=1;MQ=60;MQRankSum=1.514;QD=19.11;ReadPosRankSum=0.324;SOR=0.429;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,37:74:99:1442,0,1895:22,15,19,18
chr1	17299442	.	A	G	1422.59	PASS	AC=1;AF=0.5;AN=2;DP=106;FS=3.605;FractionInformativeReads=1;MQ=60;MQRankSum=-0.767;QD=13.42;ReadPosRankSum=-0.336;SOR=0.732;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,57:106:99:1451,0,1169:27,22,26,31
chr1	17301448	.	C	T	318.4	PASS	AC=1;AF=0.609;AN=2;DP=281;FractionInformativeReads=1;set=variant-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant20-variant22-variant26-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:184,0,206:6,0,5,0
chr1	17301672	.	T	C	705.77	PASS	AC=1;AF=0.554;AN=2;DP=2318;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant14-variant16-variant17-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,42:92:99:1147,0,1279:28,22,23,19
chr1	17301780	.	A	G	234.08	PASS	AC=1;AF=0.547;AN=2;DP=2146;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant16-variant17-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,45:80:99:1110,0,856:12,23,20,25
chr1	17301900	.	AGACAGAACCTGGCACGGGAGCCCG	A	84.87	PASS	AC=2;AF=0.635;AN=2;DP=848;set=variant-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant20-variant22-variant25-variant26-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:35:414,35,0:0,0,5,4
chr1	17302308	.	C	T	485.75	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=1.481;FractionInformativeReads=1;MQ=60;MQRankSum=0.974;QD=13.13;ReadPosRankSum=1.81;SOR=1.026;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:514,0,709:6,16,3,12
chr1	17303164	.	CAGG	C	1419.4	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.401;QD=21.51;ReadPosRankSum=0.245;SOR=0.68;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,37:66:99:1457,0,1365:15,14,19,18
chr1	17303792	.	C	T	711.02	PASS	AC=2;AF=0.813;AN=2;DP=1366;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1335,102,0:0,0,4,30
chr1	17307264	.	TGG	T,TG	2519.71	PASS	AC=1,0;AF=0.352,0.409;AN=2;DP=4243;MQ=60;set=Intersection	GT:DP:GQ:SB	0/1:80:99:17,9,34,20
chr1	17313244	.	CCCCAGGGCTCCT	C	523.92	PASS	AC=1;AF=0.56;AN=2;DP=617;MQ=60;set=variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant22-variant25-variant26-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:283,0,1238:8,3,5,3
chr1	17313391	.	G	C	1073.75	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=0.831;FractionInformativeReads=1;MQ=60;MQRankSum=0.844;QD=12.49;ReadPosRankSum=-1.442;SOR=0.853;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,40:86:99:1102,0,1200:27,19,25,15
chr1	17313454	.	G	A	1092.3	PASS	AC=1;AF=0.56;AN=2;DP=2801;MQ=60;set=variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant22-variant25-variant26-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,49:103:99:1637,0,1740:40,14,36,13
chr1	17314702	.	C	T	2223.91	PASS	AC=1;AF=0.523;AN=2;DP=3525;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant22-variant25-variant26-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:81,82:163:99:2249,0,2230:52,29,54,28
chr1	17323198	.	A	T	58.47	PASS	AC=1;AF=0.524;AN=2;DP=265;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant22-variant25-variant26-variant30-variant31-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:71:318,0,71:1,2,6,6
chr1	17323449	.	T	C	316.86	PASS	AC=2;AF=0.851;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:443,33,0:0,0,8,3
chr1	17328301	.	T	C	161.25	PASS	AC=1;AF=0.688;AN=2;DP=460;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:286,0,138:4,2,7,3
chr1	17331676	.	A	G	506.5	PASS	AC=1;AF=0.65;AN=2;DP=2091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,18:48:99:455,0,867:13,17,6,12
chr1	17338460	.	G	A	120.02	PASS	AC=1;AF=0.652;AN=2;DP=241;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant22-variant25-variant26-variant30-variant31-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:60:201,0,60:2,2,4,5
chr1	17359676	.	C	A	2925.73	PASS	AC=1;AF=0.943;AN=2;DP=4233;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:57,39:96:99:928,0,1551:23,34,14,25
chr1	17380497	.	G	T	2537.19	PASS	AC=1;AF=0.943;AN=2;DP=4391;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:30,39:69:99:1016,0,907:14,16,24,15
chr1	17393708	.	AG	A	216.15	PASS	AC=1;AF=0.595;AN=2;DP=386;set=variant2-variant4-variant8-variant9-variant15-variant16-variant18-variant21-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:104,0,134:5,2,5,2
chr1	17393889	.	A	G	364.6	PASS	AC=1;AF=0.6;AN=2;DP=925;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,27:41:99:631,0,378:10,4,14,13
chr1	17394613	.	T	C	775.28	PASS	AC=1;AF=0.89;AN=2;DP=1726;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,9:33:99:306,0,1472:14,10,4,5
chr1	17394623	.	C	T	691.77	PASS	AC=1;AF=0.89;AN=2;DP=1827;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,9:35:99:300,0,1518:15,11,4,5
chr1	17394775	.	G	A	584.83	PASS	AC=1;AF=0.6;AN=2;DP=2225;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,31:85:99:679,0,1301:26,28,18,13
chr1	17395281	.	T	C	693.24	PASS	AC=1;AF=0.6;AN=2;DP=2391;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,42:82:99:1147,0,1027:26,14,23,19
chr1	17395656	.	G	A	2426.19	PASS	AC=1;AF=0.5;AN=2;DP=186;FS=1.139;FractionInformativeReads=1;MQ=60;MQRankSum=1.113;QD=13.04;ReadPosRankSum=0.655;SOR=0.66;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:94,92:186:99:2454,0,2339:45,49,47,45
chr1	17402079	.	C	T	1419.94	PASS	AC=1;AF=0.5;AN=2;DP=158;FS=0;FractionInformativeReads=0.987;MQ=60;MQRankSum=-1.166;QD=8.99;ReadPosRankSum=-0.312;SOR=0.687;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,64:156:99:1448,0,2330:49,43,34,30
chr1	17402347	.	C	T	3192.5	PASS	AC=2;AF=0.955;AN=2;DP=7460;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5275,519,0:0,0,66,108
chr1	17402420	.	A	G	648.1	PASS	AC=2;AF=0.654;AN=2;DP=2111;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2887,240,0:0,0,21,59
chr1	17405949	.	C	T	210.27	PASS	AC=1;AF=0.656;AN=2;DP=1085;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:552,0,448:8,12,6,13
chr1	17406015	.	C	T	242.98	PASS	AC=2;AF=0.913;AN=2;DP=537;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:657,54,0:0,0,5,13
chr1	17409017	.	G	A	730.68	PASS	AC=1;AF=0.615;AN=2;DP=1341;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,40:66:99:1029,0,830:22,4,24,16
chr1	17409241	.	G	A	809.23	PASS	AC=2;AF=0.635;AN=2;DP=2349;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,84:85:99:2663,217,0:1,0,32,52
chr1	17410139	.	G	T	350.13	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=2.051;FractionInformativeReads=1;MQ=60;MQRankSum=0.912;QD=11.29;ReadPosRankSum=0.385;SOR=1.508;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:378,0,577:15,4,11,1
chr1	17411207	.	G	A	1309.99	PASS	AC=1;AF=0.5;AN=2;DP=137;FS=2.158;FractionInformativeReads=1;MQ=60;MQRankSum=-0.967;QD=9.56;ReadPosRankSum=-0.007;SOR=0.592;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:78,59:137:99:1338,0,2055:36,42,30,29
chr1	17413121	.	A	C	538.53	PASS	AC=1;AF=0.605;AN=2;DP=1370;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant11-variant13-variant15-variant18-variant24-variant25-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,40:71:99:952,0,739:19,12,22,18
chr1	17418883	.	A	G	1443.29	PASS	AC=2;AF=0.92;AN=2;DP=1757;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1727,156,0:0,0,35,17
chr1	17419024	.	G	A	1307.18	PASS	AC=1;AF=0.556;AN=2;DP=1875;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant15-variant25-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,63:137:99:1327,0,1697:37,37,33,30
chr1	17422302	.	T	C	834.87	PASS	AC=1;AF=0.735;AN=2;DP=2942;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,32:67:99:891,0,822:23,12,19,13
chr1	17429774	.	G	T	169.46	PASS	AC=2;AF=0.717;AN=2;DP=410;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant15-variant18-variant22-variant24-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:572,45,0:0,0,1,14
chr1	17431277	.	G	T	667.04	PASS	AC=1;AF=0.763;AN=2;DP=1020;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:352,0,507:9,10,8,7
chr1	17431618	.	A	G	2723.54	PASS	AC=2;AF=0.805;AN=2;DP=3861;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3478,332,0:0,0,45,66
chr1	17431681	.	C	A	1451.29	PASS	AC=1;AF=0.756;AN=2;DP=1385;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:500,0,689:5,19,4,14
chr1	17445883	.	C	T	1430.07	PASS	AC=1;AF=0.5;AN=2;DP=114;FS=4.104;FractionInformativeReads=1;MQ=60;MQRankSum=-1.338;QD=12.54;ReadPosRankSum=-1.094;SOR=0.39;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,59:114:99:1458,0,1615:11,44,16,43
chr1	17550225	.	T	C	1548.81	PASS	AC=2;AF=1;AN=2;DP=3621;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2872,285,0:0,0,46,49
chr1	17551034	.	A	T	505.74	PASS	AC=2;AF=0.671;AN=2;DP=517;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:516,36,0:0,0,0,12
chr1	17552875	.	A	G	1476.45	PASS	AC=2;AF=0.893;AN=2;DP=1981;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1298,126,0:0,0,20,22
chr1	17555316	.	C	G	859.66	PASS	AC=2;AF=0.638;AN=2;DP=785;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:770,63,0:0,0,7,14
chr1	17555508	.	G	T	919.25	PASS	AC=2;AF=0.69;AN=2;DP=925;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant22-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1251,129,0:0,0,24,19
chr1	17557039	.	T	C	234.96	PASS	AC=2;AF=0.621;AN=2;DP=1222;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:943,87,0:0,0,19,10
chr1	17557133	.	A	C	765.95	PASS	AC=2;AF=0.636;AN=2;DP=3587;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2388,239,0:0,0,45,35
chr1	17557178	.	C	T	1030.53	PASS	AC=2;AF=0.643;AN=2;DP=3356;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant17-variant18-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:2929,302,0:0,0,51,50
chr1	17557310	.	G	A	651.18	PASS	AC=2;AF=0.656;AN=2;DP=1044;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1106,108,0:0,0,14,22
chr1	17559196	.	T	C	428.34	PASS	AC=2;AF=0.611;AN=2;DP=1356;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant17-variant18-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2086,174,0:0,0,45,13
chr1	17563967	.	T	C	1537.17	PASS	AC=2;AF=0.694;AN=2;DP=6154;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,225:225:99:7165,674,0:0,0,100,125
chr1	17564990	.	T	C	48.19	PASS	AC=2;AF=0.733;AN=2;DP=347;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:492,33,0:0,0,9,2
chr1	17566041	.	C	A	121.61	PASS	AC=2;AF=0.563;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant18-variant24-variant26-variant30-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:939,72,0:0,0,21,3
chr1	17570286	.	T	C	638.33	PASS	AC=2;AF=0.697;AN=2;DP=1729;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1361,138,0:0,0,28,18
chr1	17570466	.	T	C	518.33	PASS	AC=2;AF=0.697;AN=2;DP=3315;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3290,294,0:0,0,52,46
chr1	17570767	.	C	G	1396.77	PASS	AC=2;AF=0.55;AN=2;DP=1012;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant10-variant12-variant18-variant24-variant26-variant30-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3412,315,0:0,0,46,59
chr1	17592121	.	T	C	1256.35	PASS	AC=2;AF=0.556;AN=2;DP=1100;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant10-variant18-variant24-variant26-variant30-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3183,306,0:0,0,61,41
chr1	17593144	.	C	G,T	469.22	PASS	AC=2,0;AF=0.656,0.016;AN=2;DP=2631;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	1/1:90:99:0,0,56,34
chr1	17594263	.	T	C	408.05	PASS	AC=2;AF=0.545;AN=2;DP=605;set=variant2-variant5-variant6-variant10-variant11-variant12-variant18-variant24-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,66:67:99:2540,155,0:1,0,60,6
chr1	17594592	.	G	A	130.7	PASS	AC=2;AF=0.604;AN=2;DP=593;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant20-variant22-variant24-variant26-variant29-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1648,114,0:0,0,1,37
chr1	17597181	.	A	G	91.46	PASS	AC=2;AF=0.677;AN=2;DP=371;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:275,27,0:0,0,6,3
chr1	17597314	.	T	TC	304.55	PASS	AC=2;AF=0.579;AN=2;DP=822;MQ=60;set=variant2-variant3-variant5-variant6-variant10-variant11-variant12-variant18-variant19-variant24-variant26-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:963,93,0:0,0,21,10
chr1	17597721	.	A	G	393.43	PASS	AC=2;AF=0.65;AN=2;DP=508;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant10-variant11-variant12-variant18-variant19-variant24-variant26-variant28-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:923,72,0:0,0,3,21
chr1	17600822	.	A	G	309.95	PASS	AC=2;AF=0.542;AN=2;DP=208;MQ=60;set=variant2-variant5-variant6-variant10-variant11-variant12-variant18-variant19-variant23-variant24-variant26-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:655,48,0:0,0,13,3
chr1	17601083	.	C	T	991.2	PASS	AC=2;AF=0.603;AN=2;DP=3289;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3606,354,0:0,0,56,63
chr1	17601165	.	C	T	1033.87	PASS	AC=2;AF=0.545;AN=2;DP=1105;MQ=60;set=variant2-variant5-variant6-variant11-variant12-variant18-variant19-variant23-variant24-variant26-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,105:106:99:3268,272,0:1,0,44,61
chr1	17603472	.	G	T	276.08	PASS	AC=2;AF=0.55;AN=2;DP=245;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant12-variant18-variant19-variant23-variant24-variant26-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:922,78,0:0,0,8,18
chr1	17610030	.	C	T	800.81	PASS	AC=1;AF=0.5;AN=2;DP=650;MQ=60;set=variant2-variant5-variant11-variant12-variant18-variant19-variant23-variant24-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:929,0,1042:16,22,16,20
chr1	17610466	.	A	C	768.58	PASS	AC=2;AF=0.603;AN=2;DP=1831;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1615,144,0:0,0,24,24
chr1	17610602	.	A	C	1029.44	PASS	AC=1;AF=0.784;AN=2;DP=1014;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:377,0,579:12,3,8,3
chr1	17635036	.	G	C	965.62	PASS	AC=2;AF=1;AN=2;DP=1266;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1236,114,0:0,0,13,25
chr1	17635072	.	A	G	678.63	PASS	AC=2;AF=0.989;AN=2;DP=1040;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:805,81,0:0,0,11,16
chr1	17635141	.	C	A	516.88	PASS	AC=2;AF=1;AN=2;DP=521;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:277,27,0:0,0,3,6
chr1	17657534	.	G	A	1199.59	PASS	AC=1;AF=0.632;AN=2;DP=3838;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,59:118:99:1447,0,1512:34,25,28,31
chr1	17657616	.	T	C	1083.32	PASS	AC=1;AF=0.635;AN=2;DP=3343;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,42:93:99:1088,0,1383:23,28,16,26
chr1	17660468	.	C	A	1231.32	PASS	AC=1;AF=0.5;AN=2;DP=308;FractionInformativeReads=1;MQ=60;set=variant6-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,46:92:99:1180,0,1143:25,21,28,18
chr1	17660499	.	G	C	2846.71	PASS	AC=1;AF=0.635;AN=2;DP=4126;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,51:110:99:1361,0,1444:36,23,30,21
chr1	17660601	.	T	C	1595.56	PASS	AC=1;AF=0.5;AN=2;DP=551;MQ=60;set=variant6-variant12-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,62:136:99:1450,0,1710:34,40,26,36
chr1	17660660	.	G	A	3084.97	PASS	AC=1;AF=0.635;AN=2;DP=3744;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,65:112:99:1686,0,1170:15,32,28,37
chr1	17660697	.	T	C	2043.46	PASS	AC=1;AF=0.635;AN=2;DP=2763;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,47:80:99:1304,0,874:9,24,18,29
chr1	17660802	.	A	ATT,AT	136.82	PASS	AC=2,0;AF=0.7,0.033;AN=2;DP=371;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:6:18:0,0,0,6
chr1	17661128	.	A	C	5226.38	PASS	AC=1;AF=0.697;AN=2;DP=5434;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,60:106:99:1532,0,1201:24,22,30,30
chr1	17661390	.	G	T	79.24	PASS	AC=1;AF=0.577;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant8-variant10-variant12-variant17-variant20-variant22-variant28-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:115,0,390:2,9,0,4
chr1	17661805	.	A	G	1428.81	PASS	AC=1;AF=0.718;AN=2;DP=2037;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,13:44:99:256,0,770:16,15,7,6
chr1	17662541	.	A	C	668.48	PASS	AC=1;AF=0.703;AN=2;DP=898;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:327,0,369:10,2,9,2
chr1	17662639	.	T	C	2837.79	PASS	AC=1;AF=0.635;AN=2;DP=4830;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,54:115:99:1292,0,1464:37,24,35,19
chr1	17662662	.	T	C	3360.5	PASS	AC=1;AF=0.697;AN=2;DP=5938;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,66:150:99:1619,0,2113:51,33,41,25
chr1	17662751	.	C	G	3397.09	PASS	AC=1;AF=0.697;AN=2;DP=6094;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,88:194:99:1904,0,2530:55,51,41,47
chr1	17662804	.	C	T	2753.24	PASS	AC=1;AF=0.697;AN=2;DP=4092;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,64:137:99:1571,0,1995:32,41,26,38
chr1	17662907	.	A	T	2107.85	PASS	AC=1;AF=0.697;AN=2;DP=2249;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,22:69:99:501,0,1404:18,29,11,11
chr1	17664770	.	A	G	812.07	PASS	AC=1;AF=0.697;AN=2;DP=975;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:598,0,325:2,8,0,16
chr1	17666508	.	C	T	618.19	PASS	AC=1;AF=0.645;AN=2;DP=903;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:461,0,278:4,8,6,9
chr1	17666539	.	ACG	A	89.06	PASS	AC=1;AF=0.5;AN=2;DP=36;MQ=60;set=variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:126,0,205:1,5,2,2
chr1	17668270	.	A	G	251.9	PASS	AC=1;AF=0.731;AN=2;DP=719;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:356,0,219:4,2,8,3
chr1	17668563	.	G	A	411.3	PASS	AC=1;AF=0.5;AN=2;DP=315;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant11-variant12-variant18-variant24-variant26-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:314,0,503:8,9,7,7
chr1	17672642	.	C	T	557.39	PASS	AC=1;AF=0.5;AN=2;DP=612;MQ=60;set=variant2-variant5-variant11-variant12-variant18-variant24-variant26-variant27-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,17:46:99:425,0,712:12,17,4,13
chr1	17683041	.	T	C	2627.58	PASS	AC=1;AF=0.841;AN=2;DP=5356;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,47:129:99:1063,0,2055:31,51,18,29
chr1	17683157	.	A	G	456.49	PASS	AC=1;AF=0.833;AN=2;DP=956;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:323,0,291:1,9,1,9
chr1	17685174	.	T	C	1764.3	PASS	AC=1;AF=0.859;AN=2;DP=2070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,38:69:99:924,0,782:21,10,24,14
chr1	17707739	.	T	C	2537.85	PASS	AC=1;AF=0.837;AN=2;DP=3208;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,31:66:99:849,0,948:12,23,7,24
chr1	17707798	.	C	T	1094.39	PASS	AC=1;AF=0.767;AN=2;DP=1231;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:274,0,536:4,14,0,9
chr1	17708349	.	G	A	1009.46	PASS	AC=1;AF=0.65;AN=2;DP=1031;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:424,0,566:15,3,12,1
chr1	17714638	.	A	G	196.77	PASS	AC=1;AF=0.647;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant27-variant33-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:196,0,149:2,2,5,1
chr1	17714710	.	A	C	761.87	PASS	AC=1;AF=0.609;AN=2;DP=577;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant32-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:305,0,203:4,4,7,5
chr1	17714864	.	T	C	1275.48	PASS	AC=1;AF=0.579;AN=2;DP=1779;MQ=60;set=variant-variant4-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant33-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,39:80:99:961,0,1126:23,18,22,17
chr1	17715081	.	C	T	2459.13	PASS	AC=1;AF=0.609;AN=2;DP=1889;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant32-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,42:92:99:1162,0,1245:19,31,17,25
chr1	17715135	.	T	C	2106.39	PASS	AC=1;AF=0.609;AN=2;DP=1230;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant32-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:864,0,744:10,15,13,15
chr1	17715475	.	T	C	1389.06	PASS	AC=1;AF=0.609;AN=2;DP=749;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant32-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,21:32:99:527,0,314:2,9,8,13
chr1	17718418	.	C	T	287.25	PASS	AC=1;AF=0.625;AN=2;DP=354;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant10-variant11-variant12-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:142,0,224:4,3,4,1
chr1	17718671	.	AG	A	1033.03	PASS	AC=2;AF=1;AN=2;DP=3104;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2246,190,0:0,0,27,36
chr1	17718750	.	C	T	514.13	PASS	AC=1;AF=0.609;AN=2;DP=657;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant32-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:462,0,428:5,11,8,12
chr1	17720391	.	G	A	2097.97	PASS	AC=1;AF=0.655;AN=2;DP=3319;MQ=60;set=variant2-variant6-variant7-variant10-variant11-variant12-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,53:93:99:1418,0,1192:27,13,36,17
chr1	17720439	.	T	C	4316.55	PASS	AC=2;AF=0.774;AN=2;DP=6413;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3984,395,0:0,0,77,55
chr1	17720545	.	C	T	1881.31	PASS	AC=1;AF=0.563;AN=2;DP=1151;MQ=60;set=variant4-variant10-variant13-variant23-variant28-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,76:139:99:1921,0,1673:27,36,33,43
chr1	17720615	.	A	C	2479.76	PASS	AC=2;AF=0.774;AN=2;DP=4636;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3405,311,0:0,0,44,60
chr1	17720686	.	AG	A	788.69	PASS	AC=2;AF=0.774;AN=2;DP=2769;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1980,189,0:0,0,32,31
chr1	17721388	.	C	T	252.51	PASS	AC=2;AF=0.774;AN=2;DP=462;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:295,24,0:0,0,7,1
chr1	17721695	.	GTTT	GTT,G,GT,GTTTT	1277.23	PASS	AC=1,1,0,0;AF=0.326,0.43,0.012,0.012;AN=2;DP=2239;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:52:99:0,0,17,35
chr1	17721707	.	T	G	1347.98	PASS	AC=1;AF=0.614;AN=2;DP=930;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant28-variant29-variant32-variant33-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,23:54:99:784,0,1066:10,21,7,16
chr1	17721721	.	TGA	T	1654.6	PASS	AC=1;AF=0.655;AN=2;DP=873;set=variant2-variant6-variant7-variant10-variant11-variant12-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:600,0,708:4,14,4,12
chr1	17723476	.	C	CCA	1256.83	PASS	AC=1;AF=0.655;AN=2;DP=1081;MQ=60;set=variant2-variant6-variant7-variant10-variant11-variant12-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,20:29:99:844,0,319:7,2,17,3
chr1	17723739	.	G	A	1026.23	PASS	AC=1;AF=0.655;AN=2;DP=1210;MQ=60;set=variant2-variant6-variant7-variant10-variant11-variant12-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:571,0,680:7,17,6,15
chr1	17725011	.	T	C	52.67	PASS	AC=2;AF=0.737;AN=2;DP=512;MQ=60;set=variant-variant2-filterInvariant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:383,42,0:0,0,6,8
chr1	17725358	.	C	G	515.71	PASS	AC=2;AF=0.75;AN=2;DP=3069;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2487,249,0:0,0,37,46
chr1	17735869	.	G	A	387.53	PASS	AC=1;AF=0.5;AN=2;DP=120;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant18-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:553,0,476:2,13,2,15
chr1	17738570	.	AC	A	3424.64	PASS	AC=1;AF=0.619;AN=2;DP=3061;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant29-variant32-variant33-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,84:160:99:2517,0,2234:43,33,48,36
chr1	17739586	.	G	A	1037.38	PASS	AC=1;AF=0.667;AN=2;DP=768;MQ=60;set=variant2-variant6-variant7-variant10-variant11-variant12-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:496,0,608:17,4,14,6
chr1	17739820	.	T	C	1537.04	PASS	AC=2;AF=0.756;AN=2;DP=2208;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1567,147,0:0,0,17,32
chr1	17740357	.	G	A	283.54	PASS	AC=1;AF=0.619;AN=2;DP=550;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant27-variant29-variant32-variant33-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:684,0,561:5,15,3,18
chr1	17764627	.	G	A	915.4	PASS	AC=1;AF=0.648;AN=2;DP=1251;MQ=60;set=variant2-variant6-variant7-variant10-variant11-variant12-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:360,0,522:15,6,10,4
chr1	17907505	.	A	G	513.75	PASS	AC=2;AF=0.75;AN=2;DP=675;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:589,42,0:0,0,2,12
chr1	17907575	.	C	T	66.22	PASS	AC=2;AF=0.828;AN=2;DP=184;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,1,3
chr1	17913714	.	G	A	66.22	PASS	AC=1;AF=0.952;AN=2;DP=308;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:99:120,0,356:6,6,4,0
chr1	17914057	.	G	A	1520.43	PASS	AC=1;AF=0.5;AN=2;DP=520;MQ=60;set=variant31-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,81:146:99:1861,0,1581:33,32,38,43
chr1	17914846	.	C	T	183.13	PASS	AC=2;AF=0.895;AN=2;DP=1097;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:59:641,59,0:0,0,16,4
chr1	17929972	.	G	T	1421.73	PASS	AC=1;AF=0.55;AN=2;DP=801;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant15-variant21-variant29-variant30-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,24:71:99:843,0,2264:27,20,14,10
chr1	17929990	.	A	C	1606.88	PASS	AC=1;AF=0.55;AN=2;DP=941;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant15-variant21-variant29-variant30-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,28:80:99:964,0,2345:28,24,17,11
chr1	17934113	.	C	T	82.5	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.55;QD=11.79;ReadPosRankSum=-0.937;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:111,0,116:3,1,2,1
chr1	17934319	.	C	T	1190.13	PASS	AC=1;AF=0.5;AN=2;DP=653;MQ=60;set=variant2-variant6-variant7-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,60:125:99:1404,0,1493:36,29,31,29
chr1	17948305	.	G	GGGCCACAGCAGGTACT	232.36	PASS	AC=1;AF=0.6;AN=2;DP=194;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant15-variant21-variant29-variant30-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:407,0,1291:12,6,6,2
chr1	17964288	.	C	T	1729.79	PASS	AC=1;AF=0.591;AN=2;DP=1428;set=variant2-variant6-variant7-variant15-variant21-variant22-variant29-variant30-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,66:126:99:1792,0,1478:40,20,43,23
chr1	17981184	.	A	C	1675.39	PASS	AC=1;AF=0.536;AN=2;DP=2018;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant13-variant15-variant18-variant22-variant29-variant30-variant31-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,59:141:99:1468,0,2027:33,49,21,38
chr1	17982559	.	G	A	988.33	PASS	AC=1;AF=0.536;AN=2;DP=1327;MQ=60;set=variant2-variant6-variant7-variant13-variant15-variant18-variant22-variant29-variant30-variant31-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,48:71:99:1201,0,626:11,12,20,28
chr1	17991052	.	T	C	3978.13	PASS	AC=2;AF=1;AN=2;DP=6329;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:4831,486,0:0,0,86,76
chr1	17991196	.	A	G	911.94	PASS	AC=1;AF=0.531;AN=2;DP=828;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant15-variant18-variant22-variant29-variant30-variant31-variant35-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,34:66:99:866,0,974:10,22,10,24
chr1	18016162	.	G	A	250.14	PASS	AC=1;AF=0.577;AN=2;DP=190;FractionInformativeReads=1;set=variant2-variant6-variant7-variant15-variant18-variant22-variant30-variant31-variant35-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:202,0,106:3,0,5,1
chr1	18016402	.	A	G	1166.66	PASS	AC=1;AF=0.536;AN=2;DP=1569;MQ=60;set=variant2-variant6-variant7-variant15-variant18-variant22-variant29-variant30-variant31-variant35-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,48:109:99:1130,0,1418:29,32,19,29
chr1	18016441	.	T	C	735.43	PASS	AC=1;AF=0.536;AN=2;DP=1106;MQ=60;set=variant2-variant6-variant7-variant15-variant18-variant22-variant29-variant30-variant31-variant35-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,37:74:99:872,0,900:14,23,14,23
chr1	18016491	.	G	A	287.57	PASS	AC=1;AF=0.536;AN=2;DP=458;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant15-variant18-variant22-variant29-variant30-variant31-variant35-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:410,0,708:4,17,3,12
chr1	18017522	.	T	C	1960.66	PASS	AC=1;AF=0.849;AN=2;DP=2121;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,25:57:99:626,0,756:20,12,18,7
chr1	18017558	.	A	G	3148.13	PASS	AC=1;AF=0.849;AN=2;DP=3112;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,31:86:99:721,0,1308:30,25,20,11
chr1	18017704	.	C	T	2430.23	PASS	AC=1;AF=0.849;AN=2;DP=2266;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,27:46:99:722,0,460:5,14,10,17
chr1	18021406	.	T	C	3104.12	PASS	AC=1;AF=0.849;AN=2;DP=6683;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,82:171:99:2159,0,2221:45,44,48,34
chr1	18023154	.	A	G	291.22	PASS	AC=1;AF=0.849;AN=2;DP=725;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:321,0,385:9,3,9,3
chr1	18023290	.	C	T	2120.58	PASS	AC=1;AF=0.849;AN=2;DP=3917;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,53:99:99:1336,0,1363:26,20,29,24
chr1	18023365	.	C	T	3592.28	PASS	AC=1;AF=0.837;AN=2;DP=6230;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,75:145:99:1827,0,1925:40,30,40,35
chr1	18023509	.	T	C	2590.79	PASS	AC=1;AF=0.837;AN=2;DP=4793;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,64:139:99:1772,0,1868:33,42,35,29
chr1	18023690	.	A	G	3854.74	PASS	AC=1;AF=0.837;AN=2;DP=6429;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,75:159:99:1802,0,2084:40,44,33,42
chr1	18023997	.	G	GC	2815.45	PASS	AC=1;AF=0.837;AN=2;DP=3725;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,47:94:99:1445,0,1473:24,23,23,24
chr1	18081888	.	T	C	399.66	PASS	AC=1;AF=0.5;AN=2;DP=243;MQ=60;set=variant2-variant5-variant6-variant7-variant31-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:226,0,312:4,6,4,5
chr1	18149510	.	G	T	3967.72	PASS	AC=1;AF=0.696;AN=2;DP=3113;MQ=60;set=variant2-variant3-variant5-variant7-variant10-variant14-variant15-variant17-variant19-variant20-variant22-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,70:137:99:1730,0,1805:42,25,45,25
chr1	18149566	.	C	A	5831.69	PASS	AC=1;AF=0.717;AN=2;DP=5006;MQ=60;set=variant2-variant3-variant5-variant7-variant10-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant27-variant28-variant30-variant32-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:119,125:244:99:2967,0,2806:64,55,73,52
chr1	18434518	.	G	C	373.54	PASS	AC=2;AF=0.652;AN=2;DP=602;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:232,24,0:0,0,4,4
chr1	18434981	.	T	C	88.71	PASS	AC=1;AF=0.5;AN=2;DP=69;FractionInformativeReads=1;MQ=60;set=variant7-variant12-variant13-variant16-variant23-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:222,0,110:0,4,1,6
chr1	18661583	.	T	C	1307.65	PASS	AC=1;AF=0.55;AN=2;DP=620;MQ=60;set=variant3-variant10-variant12-variant13-variant17-variant23-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:872,0,903:13,22,12,24
chr1	18691614	.	T	C	837.86	PASS	AC=1;AF=0.556;AN=2;DP=525;MQ=60;set=variant27-variant30-variant31-variant33-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:927,0,945:24,14,24,12
chr1	18691665	.	G	T	1129.53	PASS	AC=1;AF=0.556;AN=2;DP=1067;MQ=60;set=variant27-variant30-variant31-variant33-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,59:119:99:1303,0,1552:34,26,35,24
chr1	18702988	.	T	C	549.5	PASS	AC=2;AF=1;AN=2;DP=632;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:843,63,0:0,0,2,19
chr1	18703328	.	C	T	957.58	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=6.416;FractionInformativeReads=1;MQ=60;MQRankSum=0.668;QD=11.27;ReadPosRankSum=-2.373;SOR=1.445;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,34:85:99:986,0,1420:34,17,27,7
chr1	18703544	.	G	A	2824.52	PASS	AC=1;AF=0.556;AN=2;DP=1995;MQ=60;set=variant27-variant30-variant31-variant33-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:128,122:250:99:2794,0,3113:48,80,49,73
chr1	18807339	.	T	C	448.35	PASS	AC=1;AF=0.656;AN=2;DP=983;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,25:43:99:765,0,463:14,4,19,6
chr1	18807897	.	C	G	5234.8	PASS	AC=1;AF=0.671;AN=2;DP=9458;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,121:209:99:3226,0,2295:45,43,68,53
chr1	18807953	.	C	A	5525.9	PASS	AC=1;AF=0.6;AN=2;DP=6867;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant14-variant15-variant17-variant18-variant21-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,133:250:99:3122,0,2810:63,54,74,59
chr1	18808292	.	C	A	5091.97	PASS	AC=1;AF=0.671;AN=2;DP=8628;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,94:173:99:2454,0,2175:35,44,42,52
chr1	18808465	.	T	A	2146.46	PASS	AC=1;AF=0.671;AN=2;DP=4305;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,58:100:99:1669,0,1142:20,22,24,34
chr1	18808526	.	A	C	2354.86	PASS	AC=1;AF=0.671;AN=2;DP=4818;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,59:112:99:1487,0,1251:26,27,27,32
chr1	18809896	.	A	T	3924.27	PASS	AC=1;AF=0.634;AN=2;DP=5174;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,55:136:99:1823,0,4577:32,49,23,32
chr1	18809916	.	G	A	3807.75	PASS	AC=1;AF=0.563;AN=2;DP=2758;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant15-variant17-variant18-variant21-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,49:122:99:1728,0,4316:30,43,18,31
chr1	18810344	.	G	T	2284.54	PASS	AC=1;AF=0.622;AN=2;DP=2728;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:772,0,653:15,9,18,11
chr1	18811668	.	T	C	705.26	PASS	AC=1;AF=0.707;AN=2;DP=1722;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:647,0,447:8,12,10,12
chr1	18812176	.	G	A	632.34	PASS	AC=1;AF=0.625;AN=2;DP=601;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant15-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant30-variant31-variant35-variant38-variant39-filterInvariant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,25:37:99:597,0,293:5,7,10,15
chr1	19018405	.	G	A	898.09	PASS	AC=1;AF=0.6;AN=2;DP=503;FractionInformativeReads=1;MQ=60;set=variant18-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,55:100:99:1258,0,1216:25,20,28,27
chr1	19018432	.	A	C	998.61	PASS	AC=1;AF=0.6;AN=2;DP=506;FractionInformativeReads=1;MQ=60;set=variant18-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,64:112:99:1549,0,1154:23,25,30,34
chr1	19071179	.	GATAA	G	253.68	PASS	AC=1;AF=0.5;AN=2;DP=221;set=variant4-variant9-variant17-variant20-filterInvariant25-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,3:14:89:89,0,418:9,2,2,1
chr1	19071182	.	A	G	330.35	PASS	AC=1;AF=0.72;AN=2;DP=776;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant28-variant29-variant32-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:192,0,319:7,1,6,0
chr1	19071183	.	A	AATGG,G,AATGGATGG	699.95	PASS	AC=0,1,0;AF=0.172,0.516,0.016;AN=2;DP=998;set=variant6-variant10-variant11-variant12-variant3-variant-variant13-variant14-variant4-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:18:99:7,1,8,2
chr1	19071187	.	G	GATAA,GATGGATAA,GATGGATGGATGGATGGATAA	221.98	PASS	AC=1,0,0;AF=0.444,0.056,0.028;AN=2;DP=588;set=variant3-variant6-variant9-variant10-variant11-filterInvariant14-variant15-filterInvariant19-variant20-variant21-variant24-filterInvariant25-variant29-variant32-variant35-variant39-variant41-variant43	GT:DP:GQ:SB	0/1:14:99:7,1,6,0
chr1	19071191	.	G	GATGGATGGATGGATGGATAA,GATGGATGGATGGATAA,GATAA,GATGGATAA,GATGGATGGATAA	288.77	PASS	AC=0,0,1,0,0;AF=0.042,0.167,0.208,0.125,0.042;AN=2;DP=398;set=variant2-variant3-variant4-variant10-variant12-variant16-variant13-variant18-variant27-variant35-filterInvariant41-variant43	GT:DP:GQ:SB	0/3:15:86:9,3,2,1
chr1	19071752	.	T	C	339.76	PASS	AC=2;AF=0.797;AN=2;DP=1861;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1609,158,0:0,0,22,31
chr1	19072926	.	A	G	269.05	PASS	AC=2;AF=0.75;AN=2;DP=930;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1374,134,0:0,0,21,24
chr1	19075225	.	A	G	2525.49	PASS	AC=2;AF=0.792;AN=2;DP=5802;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4718,453,0:0,0,82,69
chr1	19166294	.	G	A	812.53	PASS	AC=1;AF=0.522;AN=2;DP=3265;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant28-variant29-variant34-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,68:147:99:1728,0,2334:40,39,38,30
chr1	19166501	.	G	A	3082.93	PASS	AC=1;AF=0.5;AN=2;DP=705;FractionInformativeReads=1;MQ=60;set=variant11-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:142,118:260:99:2853,0,3788:75,67,64,54
chr1	19168478	.	GA	GAA,G	31.06	PASS	AC=1,0;AF=0.545,0.114;AN=2;DP=270;MQ=60;set=variant-variant3-variant6-variant7-variant10-variant11-variant17-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:6:4:0,1,0,5
chr1	19176254	.	C	T	136.09	PASS	AC=1;AF=0.529;AN=2;DP=220;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant11-variant13-variant23-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:199,0,99:0,3,1,5
chr1	19180766	.	G	C	2899.76	PASS	AC=1;AF=0.5;AN=2;DP=219;FS=2.365;FractionInformativeReads=1;MQ=60;MQRankSum=-1.663;QD=13.24;ReadPosRankSum=2.225;SOR=0.53;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:113,106:219:99:2928,0,2994:71,42,62,44
chr1	19181015	.	G	C	2309.48	PASS	AC=1;AF=0.597;AN=2;DP=7284;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant31-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,98:217:99:2701,0,3351:56,63,43,55
chr1	19181082	.	A	C	1900.97	PASS	AC=1;AF=0.597;AN=2;DP=8445;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant31-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,130:264:99:3236,0,3597:72,62,66,64
chr1	19181393	.	T	C	2864.41	PASS	AC=1;AF=0.597;AN=2;DP=9541;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant31-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,141:298:99:3469,0,3754:76,81,72,69
chr1	19184077	.	A	G	1121.51	PASS	AC=1;AF=0.597;AN=2;DP=5193;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant31-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,63:152:99:1649,0,2431:33,56,22,41
chr1	19184176	.	G	A	349.37	PASS	AC=1;AF=0.583;AN=2;DP=1137;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant29-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:509,0,713:3,18,5,14
chr1	19186129	.	G	C	2378.41	PASS	AC=2;AF=0.869;AN=2;DP=5309;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:4688,471,0:0,0,84,74
chr1	19186260	.	C	T	659.69	PASS	AC=1;AF=0.625;AN=2;DP=2681;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,41:91:99:1037,0,1324:19,31,17,24
chr1	19186320	.	G	C	1359.12	PASS	AC=2;AF=0.829;AN=2;DP=2261;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2197,210,0:0,0,21,49
chr1	19198064	.	T	G	436.7	PASS	AC=1;AF=0.604;AN=2;DP=894;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant29-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:302,0,285:7,5,5,5
chr1	19198100	.	C	G	665.33	PASS	AC=1;AF=0.604;AN=2;DP=1155;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant29-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:342,0,372:7,5,6,5
chr1	19198141	.	T	C	773.78	PASS	AC=1;AF=0.604;AN=2;DP=1575;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant29-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:265,0,360:7,5,7,3
chr1	19198414	.	G	A	1134.78	PASS	AC=1;AF=0.604;AN=2;DP=1841;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant29-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,36:68:99:1335,0,1819:16,16,17,19
chr1	19198418	.	C	T	1131.13	PASS	AC=1;AF=0.604;AN=2;DP=1830;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant9-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant29-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,34:66:99:1313,0,1822:16,16,16,18
chr1	19198576	.	A	G	2628.54	PASS	AC=2;AF=0.795;AN=2;DP=4213;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3937,372,0:0,0,70,54
chr1	19198627	.	G	A	1955.05	PASS	AC=1;AF=0.604;AN=2;DP=3432;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant29-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,69:156:99:1747,0,3410:46,41,36,33
chr1	19198637	.	G	A	1032.71	PASS	AC=1;AF=0.66;AN=2;DP=3637;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant22-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,87:161:99:2076,0,2759:39,35,43,44
chr1	19198681	.	GC	G	904.06	PASS	AC=1;AF=0.66;AN=2;DP=3410;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant22-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,65:131:99:1673,0,1691:30,36,26,39
chr1	19198895	.	A	G	679.37	PASS	AC=1;AF=0.614;AN=2;DP=951;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant29-variant35-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,26:52:99:687,0,639:11,15,13,13
chr1	19199221	.	C	T	631.2	PASS	AC=1;AF=0.66;AN=2;DP=1990;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant22-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:764,0,806:17,16,15,17
chr1	19199473	.	T	A	1117.95	PASS	AC=1;AF=0.66;AN=2;DP=3433;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant22-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,65:129:99:1464,0,1543:32,32,36,29
chr1	19199487	.	A	G	1280.38	PASS	AC=1;AF=0.619;AN=2;DP=2783;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant29-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,62:126:99:1450,0,1560:34,30,30,32
chr1	19200895	.	C	T	438.63	PASS	AC=2;AF=0.63;AN=2;DP=1668;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant29-variant35-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2469,251,0:0,0,50,34
chr1	19201184	.	G	C	480.36	PASS	AC=2;AF=0.784;AN=2;DP=1019;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1707,153,0:0,0,17,34
chr1	19201211	.	T	TG	149.77	PASS	AC=2;AF=0.784;AN=2;DP=617;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1157,93,0:0,0,8,23
chr1	19201956	.	A	G	2312.56	PASS	AC=2;AF=0.803;AN=2;DP=4851;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3102,317,0:0,0,48,58
chr1	19202770	.	T	C	1545.44	PASS	AC=2;AF=0.977;AN=2;DP=4067;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2952,291,0:0,0,49,48
chr1	19202896	.	G	A	1560.2	PASS	AC=2;AF=0.721;AN=2;DP=2641;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1864,179,0:0,0,21,39
chr1	19202917	.	T	C	1972.77	PASS	AC=2;AF=0.776;AN=2;DP=2630;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:2130,144,0:0,0,17,31
chr1	19202926	.	T	C	1942.93	PASS	AC=2;AF=0.776;AN=2;DP=2432;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:2093,141,0:0,0,17,30
chr1	19203997	.	C	G	723.36	PASS	AC=2;AF=0.75;AN=2;DP=3932;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2711,267,0:0,0,44,45
chr1	19204154	.	G	A	245.42	PASS	AC=2;AF=0.872;AN=2;DP=776;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1322,96,0:0,0,11,21
chr1	19204173	.	A	G	167.92	PASS	AC=2;AF=0.905;AN=2;DP=740;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:75:1084,75,0:0,0,9,14
chr1	19208145	.	G	GGGTTGCCT	1086.83	PASS	AC=2;AF=0.989;AN=2;DP=2348;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:2276,153,0:0,0,30,16
chr1	19208944	.	A	G	1221.18	PASS	AC=2;AF=0.989;AN=2;DP=1365;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:955,93,0:0,0,21,10
chr1	19209543	.	A	G	2520.27	PASS	AC=2;AF=0.989;AN=2;DP=3586;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2683,263,0:0,0,58,30
chr1	19215834	.	T	C	6975.49	PASS	AC=2;AF=0.943;AN=2;DP=14701;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,333:333:99:9885,997,0:0,0,191,142
chr1	19216428	.	G	A	1696.13	PASS	AC=2;AF=0.553;AN=2;DP=1443;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant11-variant12-variant16-variant18-variant20-variant21-variant22-variant33-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2403,232,0:0,0,47,31
chr1	19234391	.	C	T	581.15	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=1.018;FractionInformativeReads=1;MQ=60;MQRankSum=-0.191;QD=9.85;ReadPosRankSum=0.008;SOR=0.465;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:609,0,863:20,13,14,12
chr1	19243589	.	A	G	2939.97	PASS	AC=1;AF=0.658;AN=2;DP=5092;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,58:113:99:1581,0,1487:20,35,21,37
chr1	19243602	.	C	T	1234.21	PASS	AC=1;AF=0.5;AN=2;DP=96;FS=0.826;FractionInformativeReads=0.979;MQ=60;MQRankSum=-1.294;QD=12.86;ReadPosRankSum=2.013;SOR=0.856;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,45:94:99:1262,0,1374:17,32,14,31
chr1	19282944	.	G	A	1081.2	PASS	AC=1;AF=0.591;AN=2;DP=1603;MQ=60;set=variant5-variant7-variant10-variant12-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant26-variant29-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,34:76:99:762,0,1108:17,25,15,19
chr1	19282981	.	A	C	2396.44	PASS	AC=2;AF=0.989;AN=2;DP=2818;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2290,203,0:0,0,28,40
chr1	19455579	.	G	A	1049.44	PASS	AC=1;AF=0.5;AN=2;DP=205;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1275,0,1445:20,35,17,32
chr1	19477108	.	C	T	540.66	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:630,0,540:14,9,15,10
chr1	19544010	.	CA	C,CAA	148.77	PASS	AC=1,0;AF=0.214,0.286;AN=2;DP=839;set=filterInvariant2-variant3-variant13-variant24-filterInvariant28-variant35-filterInvariant41	GT:DP:GQ:SB	0/1:112:99:59,35,12,6
chr1	19563461	.	CAAAAA	CAA,CAAA,CAAAA,CA,CAAAAAA,C	122.48	PASS	AC=0,1,0,0,0,0;AF=0.119,0.095,0.214,0.071,0.048,0.024;AN=2;DP=277;set=variant3-variant4-variant5-variant8-variant10-variant13-variant15-variant17-variant18-variant20-variant22-variant23-variant25-variant27-variant28-variant35-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:13:97:2,4,6,1
chr1	19578192	.	G	A	2406.15	PASS	AC=1;AF=0.662;AN=2;DP=7750;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,115:241:99:3033,0,3382:65,61,67,48
chr1	19582563	.	G	A	1599.12	PASS	AC=1;AF=0.814;AN=2;DP=6236;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,66:140:99:1370,0,1720:31,43,30,36
chr1	19583330	.	G	C	579.31	PASS	AC=1;AF=0.538;AN=2;DP=516;MQ=60;set=variant2-variant5-variant10-variant12-variant13-variant15-variant16-variant23-variant27-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:650,0,614:15,9,14,10
chr1	19583400	.	A	G	1713.52	PASS	AC=1;AF=0.955;AN=2;DP=2679;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,29:69:99:785,0,1034:22,18,15,14
chr1	19583734	.	G	A	734.38	PASS	AC=1;AF=0.662;AN=2;DP=2136;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,26:61:99:761,0,1149:16,19,15,11
chr1	19585545	.	G	A	185.02	PASS	AC=1;AF=0.814;AN=2;DP=1190;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:204,0,476:4,11,0,6
chr1	19595137	.	C	T	1477.02	PASS	AC=1;AF=0.738;AN=2;DP=3738;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,42:94:99:1086,0,1441:31,21,25,17
chr1	19595892	.	G	A	1187.92	PASS	AC=1;AF=0.738;AN=2;DP=3849;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,43:79:99:1106,0,939:10,26,15,28
chr1	19596124	.	C	T	1509.39	PASS	AC=1;AF=0.738;AN=2;DP=1825;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:669,0,548:15,5,18,9
chr1	19596156	.	G	T	2367.83	PASS	AC=1;AF=0.738;AN=2;DP=2769;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,38:65:99:932,0,679:18,9,23,15
chr1	19597420	.	G	T	1538.04	PASS	AC=1;AF=0.536;AN=2;DP=1869;set=variant2-variant5-variant10-variant12-variant13-variant15-variant16-variant17-variant23-variant27-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,67:135:99:1538,0,1638:31,37,28,39
chr1	19609254	.	T	C	1834.13	PASS	AC=1;AF=0.83;AN=2;DP=9083;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:85,91:176:99:2377,0,2110:44,41,41,50
chr1	19609437	.	T	C	115.21	PASS	AC=1;AF=0.556;AN=2;DP=231;FractionInformativeReads=1;set=variant4-filterInvariant10-variant12-variant16-variant17-variant23-variant27-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,8:38:99:219,0,938:10,20,0,8
chr1	19611241	.	T	C	692.34	PASS	AC=1;AF=0.818;AN=2;DP=5419;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:58,70:128:99:1795,0,1442:24,34,30,40
chr1	19638309	.	A	G	2421.34	PASS	AC=1;AF=0.872;AN=2;DP=4583;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,47:99:99:1337,0,1397:33,19,34,13
chr1	19638643	.	G	GCCGGGGGCCCCGGGGGCC,GCCGGGGGCC	543.23	PASS	AC=0,1;AF=0.111,0.444;AN=2;DP=559;MQ=60;set=variant3-variant4-variant7-variant10-variant20-variant21-variant23-variant26-variant28-variant30-variant31-variant32-variant36-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:21:99:3,6,7,5
chr1	19638883	.	T	C	1822.71	PASS	AC=1;AF=0.756;AN=2;DP=3055;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:778,0,875:19,16,17,16
chr1	19652132	.	T	G,TGGGGG	895.82	PASS	AC=1,0;AF=0.625,0.042;AN=2;DP=653;MQ=60;set=variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:45:99:12,19,7,7
chr1	19652133	.	G	GGT	139.39	PASS	AC=1;AF=0.5;AN=2;DP=986;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-filterInvariant11-variant13-variant14-variant20-variant21-variant26-variant27-variant31-variant32-variant35-variant36-variant39-variant40-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:30,14:44:99:230,0,1383:12,18,7,7
chr1	19654666	.	GTTT	G	319.71	PASS	AC=1;AF=0.571;AN=2;DP=432;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant20-variant21-variant26-variant27-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:702,0,584:2,10,7,11
chr1	19665497	.	A	C	451.2	PASS	AC=1;AF=0.565;AN=2;DP=956;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant20-variant21-variant24-variant26-variant27-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,9:33:99:245,0,607:4,20,3,6
chr1	19669235	.	A	G	1254.54	PASS	AC=1;AF=0.571;AN=2;DP=1715;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant20-variant21-variant26-variant27-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,24:73:99:610,0,1279:30,19,16,8
chr1	19675264	.	C	G	275.92	PASS	AC=1;AF=0.5;AN=2;DP=412;MQ=60;set=variant10-variant24-variant37-filterInvariant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,35:71:99:758,0,825:20,16,17,18
chr1	19683301	.	G	T	754.96	PASS	AC=1;AF=0.682;AN=2;DP=2823;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,39:81:99:1113,0,1165:13,29,11,28
chr1	19775113	.	T	C	1149.1	PASS	AC=1;AF=0.643;AN=2;DP=1823;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant14-variant20-variant21-variant26-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,42:86:99:1076,0,1213:29,15,27,15
chr1	19775246	.	C	T	2023.13	PASS	AC=1;AF=0.643;AN=2;DP=4228;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant14-variant20-variant21-variant26-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:117,82:199:99:2189,0,3163:64,53,44,38
chr1	19775492	.	A	G	1218.15	PASS	AC=1;AF=0.643;AN=2;DP=1642;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant14-variant20-variant21-variant26-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,49:95:99:1275,0,1483:18,28,19,30
chr1	19775811	.	G	A	238.83	PASS	AC=2;AF=0.756;AN=2;DP=1627;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1412,138,0:0,0,17,29
chr1	19810810	.	G	GC	3799.78	PASS	AC=1;AF=0.55;AN=2;DP=3044;MQ=60;set=variant4-variant9-variant10-variant17-variant20-variant21-variant24-variant26-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:118,154:272:99:3937,0,2856:48,70,63,91
chr1	19923313	.	T	A	145.99	PASS	AC=1;AF=0.646;AN=2;DP=911;MQ=60;set=variant-variant4-variant8-variant9-variant11-variant15-variant16-variant19-variant20-variant22-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:356,0,498:14,7,11,6
chr1	19935118	.	T	TA	73.03	PASS	AC=1;AF=0.646;AN=2;DP=1076;MQ=60;set=variant-variant4-variant8-variant9-variant11-variant15-variant16-variant19-variant20-variant22-variant24-variant25-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,24:36:99:623,0,259:5,7,10,14
chr1	19948507	.	A	G	491.7	PASS	AC=1;AF=0.588;AN=2;DP=819;MQ=60;set=variant2-variant4-variant7-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant26-variant31-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,15:40:99:390,0,674:17,8,9,6
chr1	19950062	.	T	C	582.99	PASS	AC=1;AF=0.588;AN=2;DP=989;MQ=60;set=variant2-variant4-variant7-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant26-variant31-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:456,0,700:15,13,12,8
chr1	19953118	.	G	T	431.57	PASS	AC=2;AF=0.966;AN=2;DP=718;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,26:27:71:946,71,0:1,0,17,9
chr1	19953165	.	G	A	1010.6	PASS	AC=1;AF=0.611;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant14-variant15-variant17-variant21-variant26-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,14:37:99:429,0,663:17,6,10,4
chr1	19954008	.	A	G	1485.19	PASS	AC=1;AF=0.611;AN=2;DP=419;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant14-variant15-variant17-variant21-variant26-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:551,0,566:8,9,11,10
chr1	19956246	.	G	A	6741.18	PASS	AC=1;AF=0.611;AN=2;DP=2406;MQ=60;set=variant10-variant12-variant14-variant15-variant17-variant21-variant26-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:141,93:234:99:2178,0,3621:86,55,51,42
chr1	19956374	.	T	G	2002.12	PASS	AC=2;AF=0.852;AN=2;DP=5792;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4336,393,0:0,0,42,89
chr1	19969611	.	A	G	630.88	PASS	AC=2;AF=0.975;AN=2;DP=561;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:414,30,0:0,0,7,3
chr1	19972586	.	A	G	553.68	PASS	AC=1;AF=0.567;AN=2;DP=651;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant12-variant13-variant14-variant15-variant17-variant21-variant26-variant28-variant29-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:704,0,693:7,18,7,18
chr1	19981451	.	A	G	888.26	PASS	AC=2;AF=0.742;AN=2;DP=1547;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1896,176,0:0,0,37,22
chr1	19981791	.	A	G	2202.11	PASS	AC=2;AF=0.75;AN=2;DP=5107;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4686,423,0:0,0,77,64
chr1	19983863	.	T	TG,TGG	705.39	PASS	AC=0,2;AF=0.038,0.85;AN=2;DP=930;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:11:33:0,0,10,1
chr1	19984100	.	G	GC	1834.48	PASS	AC=2;AF=1;AN=2;DP=3743;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2268,204,0:0,0,35,32
chr1	19984461	.	C	T	921.31	PASS	AC=2;AF=0.878;AN=2;DP=1594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1281,110,0:0,0,16,21
chr1	19992066	.	T	C	1553.15	PASS	AC=1;AF=0.703;AN=2;DP=6157;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,76:181:99:1768,0,2595:54,51,40,36
chr1	20008600	.	C	T	102.99	PASS	AC=1;AF=0.841;AN=2;DP=352;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:217,0,193:5,0,6,1
chr1	20008880	.	G	T	440.93	PASS	AC=1;AF=0.817;AN=2;DP=2257;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,31:56:99:805,0,648:11,14,17,14
chr1	20009036	.	C	T	816.85	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.205;QD=10.75;ReadPosRankSum=-1.194;SOR=0.792;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,32:76:99:845,0,1285:25,19,19,13
chr1	20020993	.	A	G	3419.04	PASS	AC=2;AF=0.854;AN=2;DP=5675;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:5656,385,0:0,0,61,66
chr1	20020994	.	C	T	3419.04	PASS	AC=2;AF=0.703;AN=2;DP=5031;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:5656,385,0:0,0,61,65
chr1	20027034	.	ATCT	A	543.6	PASS	AC=2;AF=0.629;AN=2;DP=637;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:720,48,0:0,0,13,3
chr1	20097285	.	T	G	518.42	PASS	AC=2;AF=0.538;AN=2;DP=686;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant16-variant23-variant27-variant28-variant30-variant33-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1947,183,0:0,0,21,40
chr1	20097370	.	T	C	662.04	PASS	AC=2;AF=0.6;AN=2;DP=578;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:661,48,0:0,0,2,14
chr1	20097822	.	G	A	1524.71	PASS	AC=2;AF=0.538;AN=2;DP=1607;MQ=60;set=variant2-variant7-variant16-variant23-variant27-variant28-variant30-variant33-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,111:112:99:3434,325,0:1,0,51,60
chr1	20097941	.	G	T	1981.68	PASS	AC=2;AF=0.643;AN=2;DP=1966;set=variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1880,189,0:0,0,25,38
chr1	20141882	.	CA	C	75.17	PASS	AC=2;AF=1;AN=2;DP=366;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:368,30,0:0,0,2,8
chr1	20216860	.	G	A	2177.96	PASS	AC=1;AF=0.716;AN=2;DP=2337;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,34:59:99:961,0,620:16,9,23,11
chr1	20237881	.	AT	ATT,ATTT,A	318.35	PASS	AC=0,1,0;AF=0.257,0.189,0.149;AN=2;DP=3760;set=variant2-filterInvariant4-variant5-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-filterInvariant39-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:40:99:4,17,9,10
chr1	20238343	.	A	G	1416.26	PASS	AC=1;AF=0.73;AN=2;DP=2224;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:726,0,709:15,16,17,14
chr1	20238860	.	C	G	518.01	PASS	AC=1;AF=0.65;AN=2;DP=906;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant19-variant20-variant21-variant23-variant27-variant31-variant32-variant35-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,43:71:99:1085,0,800:10,18,19,24
chr1	20246876	.	C	T	2034.74	PASS	AC=1;AF=0.5;AN=2;DP=1467;MQ=60;set=variant11-variant12-variant14-variant19-variant23-variant27-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,59:130:99:1390,0,1691:39,32,32,27
chr1	20248646	.	G	A	1211.15	PASS	AC=1;AF=0.5;AN=2;DP=458;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant12-variant14-variant19-variant23-variant26-variant27-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,22:30:99:896,0,437:6,2,18,4
chr1	20248651	.	A	G	1238.67	PASS	AC=1;AF=0.5;AN=2;DP=487;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant12-variant14-variant19-variant23-variant26-variant27-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,24:33:99:960,0,463:7,2,20,4
chr1	20248709	.	A	G	1478.57	PASS	AC=1;AF=0.5;AN=2;DP=1260;MQ=60;set=variant9-variant11-variant12-variant14-variant19-variant23-variant26-variant27-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,60:98:99:1513,0,904:25,13,35,25
chr1	20250336	.	A	G	198.66	PASS	AC=1;AF=0.556;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant9-variant11-variant13-variant16-variant18-variant19-variant21-variant23-variant26-variant27-variant35-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,2:9:63:63,0,389:3,4,0,2
chr1	20250339	.	A	G	198.66	PASS	AC=1;AF=0.553;AN=2;DP=187;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant9-variant11-variant13-variant16-variant18-variant19-variant21-variant23-variant26-variant27-variant34-variant35-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:63:63,0,389:3,3,0,2
chr1	20301927	.	A	T	249.26	PASS	AC=1;AF=0.607;AN=2;DP=479;MQ=60;set=variant6-variant7-variant14-variant15-variant18-variant22-variant29-variant30-variant31-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,11:35:99:309,0,650:15,9,8,3
chr1	20305065	.	C	T	2739.19	PASS	AC=2;AF=0.817;AN=2;DP=3602;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2342,215,0:0,0,28,44
chr1	20305466	.	GCACACA	G,GCACA,GCACGCACACACACACACA,GCACGCACACACACACACACACA,GCA,GCACACACA	679.96	PASS	AC=0,2,0,0,0,0;AF=0.114,0.705,0.034,0.023,0.045,0.011;AN=2;DP=988;set=Intersection	GT:DP:GQ:SB	2/2:20:40:0,1,5,14
chr1	20305538	.	C	A	31.67	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.898;QD=3.17;ReadPosRankSum=0.898;SOR=0.012;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,2:10:60:60,0,350:0,8,1,1
chr1	20395401	.	C	A	1378.59	PASS	AC=1;AF=0.691;AN=2;DP=1569;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,16:46:99:444,0,865:20,10,13,3
chr1	20395497	.	G	A	4152.25	PASS	AC=1;AF=0.591;AN=2;DP=1669;MQ=60;set=variant-variant7-variant8-variant11-variant13-variant14-variant18-variant30-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,59:129:99:1472,0,1830:40,30,32,27
chr1	20396674	.	C	A	513.49	PASS	AC=1;AF=0.607;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant8-variant11-variant13-variant14-variant18-variant30-variant33-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:342,0,294:7,5,9,4
chr1	20439313	.	C	G	1061.3	PASS	AC=2;AF=0.7;AN=2;DP=4616;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,94:95:99:3102,239,0:0,1,50,44
chr1	20439522	.	T	A	826.76	PASS	AC=2;AF=0.7;AN=2;DP=2917;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2389,235,0:0,0,40,39
chr1	20440305	.	A	G	406.43	PASS	AC=2;AF=0.571;AN=2;DP=228;MQ=60;set=variant8-variant11-variant27-variant29-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:930,75,0:0,0,13,12
chr1	20442054	.	T	C	1663.2	PASS	AC=2;AF=0.782;AN=2;DP=4351;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2975,290,0:0,0,42,55
chr1	20442691	.	C	T	3369.83	PASS	AC=2;AF=0.604;AN=2;DP=1776;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant16-variant19-variant21-variant22-variant24-variant26-variant27-variant28-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1726,173,0:0,0,33,25
chr1	20446170	.	GT	G	328.34	PASS	AC=2;AF=1;AN=2;DP=650;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:455,42,0:0,0,1,13
chr1	20470148	.	C	T	717.26	PASS	AC=2;AF=0.577;AN=2;DP=964;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant21-variant24-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3289,314,0:0,0,37,68
chr1	20476391	.	C	T	3580.07	PASS	AC=2;AF=0.646;AN=2;DP=4740;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant18-variant20-variant21-variant23-variant24-variant27-variant29-variant30-variant34-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:6218,614,0:0,0,82,124
chr1	20487743	.	C	T	262.21	PASS	AC=2;AF=0.781;AN=2;DP=348;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:266,21,0:0,0,6,1
chr1	20488689	.	T	C	30.19	PASS	AC=2;AF=0.779;AN=2;DP=783;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:770,72,0:0,0,16,8
chr1	20489393	.	C	G	211.34	PASS	AC=2;AF=0.625;AN=2;DP=808;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant21-variant23-variant24-variant32-variant34-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1351,120,0:0,0,25,15
chr1	20490518	.	T	C	923.22	PASS	AC=2;AF=0.786;AN=2;DP=5529;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5249,521,0:0,0,79,95
chr1	20501442	.	T	C	962.83	PASS	AC=2;AF=0.694;AN=2;DP=2826;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3256,315,0:0,0,58,47
chr1	20503710	.	G	A	300.08	PASS	AC=2;AF=0.828;AN=2;DP=215;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:87,6,0:0,0,2,0
chr1	20512652	.	A	C	2312.64	PASS	AC=2;AF=1;AN=2;DP=4195;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2323,251,0:0,0,43,41
chr1	20518924	.	G	T	741.89	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=4.778;FractionInformativeReads=1;MQ=60;MQRankSum=-0.736;QD=11.07;ReadPosRankSum=-0.648;SOR=0.441;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:770,0,1000:14,22,16,15
chr1	20519009	.	T	TG	730.99	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=0;FractionInformativeReads=0.923;MQ=60;MQRankSum=-0.031;QD=14.06;ReadPosRankSum=-0.157;SOR=0.836;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,28:48:99:768,0,509:10,10,15,13
chr1	20617658	.	A	AGTGTGTGT,AGTGTGTGTGT,AGTGT,AGTGTGTGTGTGT,AGT,ACTGTGTGT,AGTGTGT	31.48	PASS	AC=1,0,0,0,0,0,0;AF=0.3,0.125,0.05,0.075,0.05,0.025,0.025;AN=2;DP=330;set=variant4-filterInvariant5-variant6-variant11-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant35-variant36-variant38-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:17:99:3,7,3,4
chr1	20617671	.	A	G	40.45	PASS	AC=2;AF=0.727;AN=2;DP=268;set=variant3-variant4-variant6-variant11-variant14-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:68:759,68,0:0,0,8,15
chr1	20637374	.	T	C	452.09	PASS	AC=2;AF=0.8;AN=2;DP=1720;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1753,153,0:0,0,13,38
chr1	20649814	.	T	C	1758.66	PASS	AC=1;AF=0.685;AN=2;DP=4481;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,86:160:99:2298,0,1811:39,35,50,36
chr1	20657352	.	T	C	1475.11	PASS	AC=1;AF=0.685;AN=2;DP=4364;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,63:143:99:1418,0,1919:39,41,32,31
chr1	20664128	.	T	C	865.67	PASS	AC=1;AF=0.545;AN=2;DP=849;MQ=60;set=variant5-variant8-variant18-variant20-variant25-variant27-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,25:74:99:606,0,1292:29,20,13,12
chr1	20664156	.	C	A	1169.45	PASS	AC=1;AF=0.5;AN=2;DP=206;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,24:84:99:618,0,1517:33,27,11,13
chr1	20671833	.	C	A	1170.96	PASS	AC=1;AF=0.667;AN=2;DP=2679;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:985,0,1060:26,13,23,17
chr1	20676932	.	T	A	138.19	PASS	AC=1;AF=0.688;AN=2;DP=334;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant11-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant35-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:199,0,294:2,8,0,6
chr1	20678766	.	G	A	650.7	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,29:40:99:830,0,257:3,8,16,13
chr1	20680760	.	A	G	1069.12	PASS	AC=1;AF=0.68;AN=2;DP=2017;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant34-variant35-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:935,0,1129:25,16,18,15
chr1	20809349	.	CGTGT	CGTGTGT,CGT,CGTGTGTGTGTGTGT,CGTGTGTGTGTGT,CGTGTGTGTGT,CGTGTGTGT,C	3059.03	PASS	AC=0,0,0,1,0,1,0;AF=0.318,0.136,0.091,0.023,0.148,0.045,0.011;AN=2;DP=8181;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	6/4:72:99:1,1,29,41
chr1	20826412	.	G	A	305.78	PASS	AC=1;AF=0.5;AN=2;DP=143;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:583,0,726:15,11,11,12
chr1	20826485	.	C	G	556.02	PASS	AC=1;AF=0.5;AN=2;DP=208;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,38:75:99:967,0,1101:21,16,21,17
chr1	20879156	.	A	G	1347.35	PASS	AC=2;AF=0.556;AN=2;DP=1875;MQ=60;set=variant2-variant3-variant5-variant13-variant14-variant17-variant19-variant21-variant25-variant27-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2550,246,0:0,0,39,43
chr1	20880730	.	G	C	862.88	PASS	AC=1;AF=0.5;AN=2;DP=337;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,40:91:99:982,0,1392:27,24,16,24
chr1	20880905	.	A	G	399.29	PASS	AC=2;AF=0.556;AN=2;DP=1052;MQ=60;set=variant2-variant3-variant5-variant13-variant14-variant17-variant19-variant21-variant25-variant27-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1993,184,0:0,0,36,25
chr1	20881309	.	T	A	1128.29	PASS	AC=2;AF=0.556;AN=2;DP=1358;MQ=60;set=variant2-variant3-variant5-variant13-variant14-variant17-variant19-variant21-variant25-variant27-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1561,149,0:0,0,25,25
chr1	20915589	.	TC	T	1389.1	PASS	AC=2;AF=0.729;AN=2;DP=2554;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2031,172,0:0,0,31,26
chr1	20940258	.	T	A	4242.68	PASS	AC=2;AF=1;AN=2;DP=4635;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2496,247,0:0,0,46,37
chr1	20945495	.	G	C	137.38	PASS	AC=2;AF=0.621;AN=2;DP=389;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:406,30,0:0,0,2,8
chr1	20945520	.	C	A	79.68	PASS	AC=2;AF=0.779;AN=2;DP=272;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:262,18,0:0,0,0,6
chr1	20964328	.	A	G	83.95	PASS	AC=2;AF=0.886;AN=2;DP=1103;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:941,81,0:0,0,20,7
chr1	20971875	.	G	A	127.46	PASS	AC=2;AF=0.629;AN=2;DP=297;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:346,27,0:0,0,8,1
chr1	20971980	.	CA	CAA,CAAAA,CAAA,CAAAAA,C	116.03	PASS	AC=1,0,0,0,0;AF=0.269,0.103,0.205,0.026,0.013;AN=2;DP=1436;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:45:99:12,6,17,10
chr1	20972048	.	G	A	656.75	PASS	AC=2;AF=0.886;AN=2;DP=3429;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2769,261,0:0,0,42,46
chr1	20976759	.	C	T	85.73	PASS	AC=2;AF=0.886;AN=2;DP=878;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:972,99,0:0,0,21,12
chr1	20977221	.	A	T	983.42	PASS	AC=2;AF=0.886;AN=2;DP=3264;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2372,225,0:0,0,37,38
chr1	20977365	.	C	G	608.8	PASS	AC=2;AF=0.886;AN=2;DP=2815;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2387,216,0:0,0,42,30
chr1	20977449	.	G	T	854.27	PASS	AC=2;AF=0.75;AN=2;DP=3280;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2838,266,0:0,0,51,38
chr1	20977854	.	A	ATTC	15809.4	PASS	AC=2;AF=0.613;AN=2;DP=21617;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,620:620:99:27734,1869,0:0,0,303,317
chr1	20978058	.	G	A	1538.04	PASS	AC=2;AF=0.75;AN=2;DP=4537;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:4297,363,0:0,0,27,94
chr1	20978832	.	T	C	954.21	PASS	AC=2;AF=0.886;AN=2;DP=5274;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3634,359,0:0,0,64,56
chr1	20979307	.	G	GT	1700.62	PASS	AC=2;AF=0.75;AN=2;DP=6132;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:5289,478,0:0,0,74,85
chr1	20980880	.	G	A	218.98	PASS	AC=2;AF=0.629;AN=2;DP=1797;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1335,131,0:0,0,24,20
chr1	20981806	.	G	A	852.03	PASS	AC=2;AF=1;AN=2;DP=933;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:967,84,0:0,0,21,7
chr1	20982631	.	G	A	391.32	PASS	AC=2;AF=0.716;AN=2;DP=3749;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2638,263,0:0,0,43,45
chr1	20987873	.	G	C	5606.94	PASS	AC=2;AF=1;AN=2;DP=10130;FS=0;MQ=60;MQRankSum=-0.997;ReadPosRankSum=1.147;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,209:209:99:6212,626,0:0,0,114,95
chr1	20992546	.	C	T	326.13	PASS	AC=2;AF=0.625;AN=2;DP=92;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1030,87,0:0,0,24,5
chr1	20992606	.	G	T	640.48	PASS	AC=2;AF=0.629;AN=2;DP=2349;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2472,218,0:0,0,53,20
chr1	20992819	.	G	C	920.03	PASS	AC=2;AF=0.826;AN=2;DP=4997;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3964,380,0:0,0,53,74
chr1	20992933	.	G	C	385.68	PASS	AC=2;AF=1;AN=2;DP=864;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1148,96,0:0,0,8,24
chr1	21016487	.	C	T	424.04	PASS	AC=2;AF=0.667;AN=2;DP=620;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant11-variant12-variant13-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:787,78,0:0,0,17,9
chr1	21016906	.	G	T	233.57	PASS	AC=2;AF=0.667;AN=2;DP=644;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant8-variant11-variant12-variant13-variant17-variant19-variant20-variant21-variant24-variant25-variant27-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:541,48,0:0,0,7,9
chr1	21044362	.	CG	C	373.97	PASS	AC=2;AF=1;AN=2;DP=497;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:375,30,0:0,0,6,4
chr1	21058655	.	G	A	49.73	PASS	AC=2;AF=0.705;AN=2;DP=186;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant26-variant28-variant29-variant33-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:243,24,0:0,0,3,5
chr1	21091861	.	G	T	1633.48	PASS	AC=2;AF=0.673;AN=2;DP=2786;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant33-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3624,349,0:0,0,78,39
chr1	21101163	.	A	G	1018.79	PASS	AC=2;AF=1;AN=2;DP=1235;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.208;ReadPosRankSum=1.595;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1316,120,0:0,0,14,26
chr1	21151744	.	GAAA	GAA,GA,GAAAAAA,G	131.55	PASS	AC=1,0,0,0;AF=0.37,0.093,0.019,0.019;AN=2;DP=1041;set=variant-variant2-filterInvariant4-filterInvariant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-filterInvariant12-filterInvariant14-variant16-filterInvariant17-variant21-variant24-filterInvariant25-variant27-variant29-filterInvariant31-variant33-variant34-variant36-filterInvariant37-variant38-variant39-variant41-filterInvariant44	GT:DP:GQ:SB	0/1:18:99:3,6,1,8
chr1	21167404	.	A	G	2430.39	PASS	AC=2;AF=1;AN=2;DP=3309;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.887;ReadPosRankSum=1.518;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2412,231,0:0,0,45,32
chr1	21175855	.	C	A	1305.15	PASS	AC=2;AF=0.989;AN=2;DP=1135;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:743,57,0:0,0,17,2
chr1	21179969	.	G	A	996.08	PASS	AC=2;AF=0.989;AN=2;DP=1855;FS=0;MQ=60;MQRankSum=1.25;ReadPosRankSum=1.031;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1284,120,0:0,0,28,12
chr1	21180181	.	C	T	404.05	PASS	AC=2;AF=0.707;AN=2;DP=1191;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1311,105,0:0,0,8,27
chr1	21180250	.	G	A	172.12	PASS	AC=2;AF=0.7;AN=2;DP=481;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:452,36,0:0,0,5,7
chr1	21188703	.	A	T	1079.77	PASS	AC=2;AF=0.707;AN=2;DP=2827;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,94:96:99:2335,231,0:1,1,47,47
chr1	21191416	.	T	G	381.83	PASS	AC=2;AF=0.727;AN=2;DP=1052;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:954,87,0:0,0,12,17
chr1	21191430	.	A	G	383.05	PASS	AC=2;AF=0.692;AN=2;DP=757;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:917,87,0:0,0,13,16
chr1	21220375	.	T	G	43.74	PASS	AC=2;AF=0.726;AN=2;DP=362;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:582,48,0:0,0,4,12
chr1	21327637	.	C	T	3232.64	PASS	AC=2;AF=1;AN=2;DP=5018;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3705,342,0:0,0,67,47
chr1	21377314	.	C	T	945.78	PASS	AC=2;AF=0.989;AN=2;DP=1148;MQ=60;MQRankSum=0.106;ReadPosRankSum=-1.936;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:732,78,0:0,0,15,11
chr1	21554319	.	A	G	481.36	PASS	AC=2;AF=0.977;AN=2;DP=1230;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:881,81,0:0,0,16,11
chr1	21562479	.	C	T	3441.45	PASS	AC=2;AF=1;AN=2;DP=110;FS=0;FractionInformativeReads=1;MQ=60;QD=31.29;SOR=1.631;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3470,328,0:0,0,36,74
chr1	21616932	.	G	T	475.89	PASS	AC=2;AF=0.563;AN=2;DP=297;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant16-variant17-variant20-variant23-variant27-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1106,114,0:0,0,23,15
chr1	21671973	.	G	A	682.53	PASS	AC=2;AF=0.563;AN=2;DP=496;MQ=60;set=variant8-variant14-variant16-variant20-variant23-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2259,243,0:0,0,34,48
chr1	21751068	.	C	G	65.05	PASS	AC=1;AF=0.977;AN=2;DP=65;FS=0;FractionInformativeReads=1;MQRankSum=-0.731;ReadPosRankSum=-0.731;set=filterInvariant-filterInvariant3-variant7-variant10-filterInvariant11-filterInvariant12-filterInvariant13-variant15-filterInvariant16-variant18-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant28-filterInvariant30-variant31-filterInvariant36-filterInvariant37-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:23:96,0,23:1,0,3,1
chr1	21751142	.	A	G	1146.87	PASS	AC=1;AF=0.547;AN=2;DP=2856;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-variant8-variant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:58,17:75:99:306,0,1492:44,14,13,4
chr1	21751214	.	G	A	3577.5	PASS	AC=1;AF=0.535;AN=2;DP=9497;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:178,55:233:99:828,0,4025:101,77,32,23
chr1	21752682	.	G	A	422.93	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3086;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:79,16:95:99:127,0,1839:51,28,9,7
chr1	21752766	.	A	G	394.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4582;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:139,23:162:92:92,0,3230:78,61,11,12
chr1	21753468	.	T	A	1167.97	PASS	AC=1;AF=0.625;AN=2;DP=114;FractionInformativeReads=1;set=variant18-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:489,0,553:16,6,14,7
chr1	21754862	.	CG	C	1694.18	PASS	AC=1;AF=0.5;AN=2;DP=114;FS=1.545;FractionInformativeReads=0.982;MQ=54.81;MQRankSum=5.104;QD=14.86;ReadPosRankSum=0.853;SOR=0.534;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,58:112:99:1731,0,1570:34,20,34,24
chr1	21754996	.	C	T	3200.4	PASS	AC=1;AF=0.989;AN=2;DP=4876;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:118,56:174:99:1137,0,2976:61,57,18,38
chr1	21755055	.	C	A	1546.59	PASS	AC=1;AF=0.826;AN=2;DP=1962;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,21:106:99:439,0,2300:33,52,5,16
chr1	21755135	.	T	G	881.09	PASS	AC=1;AF=0.671;AN=2;DP=836;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,12:52:99:317,0,1402:16,24,10,2
chr1	21755347	.	C	T	3292.91	PASS	AC=1;AF=0.671;AN=2;DP=6425;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,96:218:99:2211,0,3232:53,69,35,61
chr1	21755453	.	G	A	1047.64	PASS	AC=1;AF=0.826;AN=2;DP=2307;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,17:99:99:391,0,2198:42,40,1,16
chr1	21755756	.	G	C	4868.3	PASS	AC=1;AF=0.826;AN=2;DP=10176;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,136:262:99:3187,0,2853:68,58,77,59
chr1	21755867	.	A	G	5568.25	PASS	AC=1;AF=0.826;AN=2;DP=10910;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:137,116:253:99:2882,0,3411:63,74,50,66
chr1	21755906	.	G	A	4328.42	PASS	AC=1;AF=0.826;AN=2;DP=8395;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,70:177:99:1646,0,2599:47,60,28,42
chr1	21756008	.	G	T	1587.13	PASS	AC=1;AF=0.826;AN=2;DP=3302;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,35:83:99:916,0,1279:17,31,10,25
chr1	21756069	.	G	A	848.77	PASS	AC=1;AF=0.826;AN=2;DP=1438;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,20:37:99:653,0,476:5,12,3,17
chr1	21766663	.	G	C	3085.14	PASS	AC=1;AF=0.667;AN=2;DP=2461;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,41:76:99:1206,0,878:25,10,29,12
chr1	21795021	.	T	C	438.01	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=3.471;FractionInformativeReads=1;MQ=60;MQRankSum=1.375;QD=15.1;ReadPosRankSum=-1.157;SOR=0.232;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:466,0,412:4,10,7,8
chr1	21795388	.	A	G	3820.42	PASS	AC=1;AF=0.667;AN=2;DP=5991;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,89:154:99:2301,0,1461:30,35,36,53
chr1	21795432	.	G	GA	1829.98	PASS	AC=1;AF=0.5;AN=2;DP=1748;MQ=60;set=variant3-variant6-variant9-variant14-variant17-variant18-variant20-variant23-variant24-variant27-variant28-variant34-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,42:98:99:1388,0,1961:19,37,14,28
chr1	21797292	.	G	A	226.68	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=1.475;FractionInformativeReads=1;MQ=60;MQRankSum=0.278;QD=7.08;ReadPosRankSum=-0.317;SOR=1.148;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,11:32:99:255,0,487:10,11,4,7
chr1	21799413	.	C	T	2125.93	PASS	AC=1;AF=0.5;AN=2;DP=172;FS=1.182;FractionInformativeReads=1;MQ=60;MQRankSum=-0.853;QD=12.36;ReadPosRankSum=-0.12;SOR=0.797;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:91,81:172:99:2154,0,2166:45,46,38,43
chr1	21799489	.	T	C	3046.81	PASS	AC=2;AF=0.817;AN=2;DP=4170;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3116,273,0:0,0,30,61
chr1	21799823	.	A	G	1072.45	PASS	AC=2;AF=0.793;AN=2;DP=1856;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2467,192,0:0,0,54,10
chr1	21801346	.	G	A	1783.8	PASS	AC=2;AF=0.817;AN=2;DP=2240;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1368,117,0:0,0,27,12
chr1	21804815	.	T	G	1895.64	PASS	AC=2;AF=1;AN=2;DP=5808;FS=0;MQRankSum=-0.374;ReadPosRankSum=1.677;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4467,437,0:0,0,68,78
chr1	21805730	.	A	G	3152.45	PASS	AC=2;AF=0.817;AN=2;DP=4365;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3770,351,0:0,0,78,39
chr1	21805978	.	G	A	1998.63	PASS	AC=2;AF=0.817;AN=2;DP=3233;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2586,221,0:0,0,21,53
chr1	21806751	.	C	T	1746.51	PASS	AC=2;AF=0.824;AN=2;DP=775;set=variant3-variant6-variant9-variant14-variant17-variant18-variant20-variant23-variant24-variant27-variant28-variant34-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,29:31:9:892,9,0:0,2,7,22
chr1	21807367	.	TA	T	37.75	PASS	AC=2;AF=1;AN=2;DP=31;FS=0;FractionInformativeReads=1;set=variant10-variant13-variant16-variant17-variant20-variant24-variant25-variant32-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:75,6,0:0,0,0,2
chr1	21808159	.	G	A	1222.52	DRAGENHardSNP	AC=1;AF=0.525;AN=2;DP=5615;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:39,24:63:99:422,0,801:18,21,10,14
chr1	21808207	.	A	C	840.85	DRAGENHardSNP	AC=1;AF=0.528;AN=2;DP=3229;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:29,14:43:99:287,0,583:13,16,3,11
chr1	21808223	.	T	C	637.76	DRAGENHardSNP	AC=1;AF=0.529;AN=2;DP=2147;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:209,0,339:5,10,1,8
chr1	21809750	.	T	C	608.57	DRAGENHardSNP	AC=2;AF=0.964;AN=2;DP=765;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:581,66,0:0,0,0,22
chr1	21880818	.	CAT	CATATAT,CATAT,C,CATATATAT	193.4	PASS	AC=1,1,0,0;AF=0.638,0.138,0.013,0.025;AN=2;DP=1054;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:16:75:0,0,5,11
chr1	21887446	.	T	C	251.78	PASS	AC=1;AF=0.5;AN=2;DP=53;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:385,0,409:9,4,9,6
chr1	21889635	.	T	C	2897.73	PASS	AC=2;AF=0.955;AN=2;DP=7280;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5084,501,0:0,0,84,83
chr1	21889899	.	A	G	341.59	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=4.634;FractionInformativeReads=1;MQ=60;MQRankSum=0.421;QD=18.98;ReadPosRankSum=0.14;SOR=1.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:370,0,137:3,3,3,9
chr1	21890464	.	A	G	772.73	PASS	AC=2;AF=1;AN=2;DP=1472;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1574,150,0:0,0,34,16
chr1	21900420	.	A	G	624.89	PASS	AC=1;AF=0.816;AN=2;DP=2362;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:854,0,617:7,17,12,21
chr1	21900891	.	G	A	1014.58	PASS	AC=2;AF=0.966;AN=2;DP=963;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1051,81,0:0,0,24,3
chr1	21901025	.	T	TAC	2120.86	PASS	AC=2;AF=0.717;AN=2;DP=4039;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant25-variant26-variant29-variant31-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:4654,368,0:0,0,67,49
chr1	21901277	.	A	G	236.88	PASS	AC=2;AF=0.932;AN=2;DP=1313;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1098,87,0:0,0,7,22
chr1	21902950	.	C	A	191.06	PASS	AC=1;AF=0.538;AN=2;DP=302;MQ=60;set=variant-variant3-variant5-variant6-variant12-variant13-variant14-variant17-variant23-variant24-variant27-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:446,0,390:10,2,12,1
chr1	21903791	.	C	G	1706.95	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.878;QD=15.52;ReadPosRankSum=-1.75;SOR=0.752;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,61:110:99:1735,0,1283:34,15,43,18
chr1	21904206	.	C	T	2004.06	PASS	AC=1;AF=0.607;AN=2;DP=2123;MQ=60;set=variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,29:80:99:752,0,1443:20,31,7,22
chr1	21904267	.	A	G	689.61	PASS	AC=2;AF=0.798;AN=2;DP=2516;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1961,183,0:0,0,32,29
chr1	21922893	.	CG	C	1895.97	PASS	AC=1;AF=0.591;AN=2;DP=1354;MQ=60;set=variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,43:65:99:1191,0,521:11,11,18,25
chr1	21925108	.	T	C	135.29	PASS	AC=2;AF=0.952;AN=2;DP=456;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:668,54,0:0,0,4,14
chr1	21926188	.	C	T	197.45	PASS	AC=2;AF=1;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;QD=28.21;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:226,21,0:0,0,4,3
chr1	21928344	.	C	G	902.31	PASS	AC=1;AF=0.558;AN=2;DP=1675;MQ=60;set=variant2-variant3-variant8-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:826,0,756:5,20,6,22
chr1	21929175	.	T	C	884.9	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.345;QD=10.29;ReadPosRankSum=-2.611;SOR=0.699;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,35:86:99:913,0,1461:29,22,20,15
chr1	21929260	.	A	G	4055.81	PASS	AC=2;AF=0.932;AN=2;DP=6285;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4052,410,0:0,0,77,60
chr1	21929456	.	GC	G	434.58	PASS	AC=2;AF=0.763;AN=2;DP=1747;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1164,114,0:0,0,9,29
chr1	21932530	.	C	A	2269.11	PASS	AC=2;AF=0.807;AN=2;DP=3315;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2095,206,0:0,0,42,27
chr1	21932625	.	G	A	1255.24	PASS	AC=1;AF=0.5;AN=2;DP=1192;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant29-variant32-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,87:173:99:1904,0,2068:48,38,50,37
chr1	21934667	.	G	A	619.76	PASS	AC=1;AF=0.662;AN=2;DP=2505;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,27:75:99:610,0,1176:21,27,14,13
chr1	21935433	.	G	T	1057.33	PASS	AC=2;AF=0.69;AN=2;DP=3172;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2433,224,0:0,0,29,46
chr1	21938375	.	T	G	723.78	PASS	AC=1;AF=0.581;AN=2;DP=1870;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,39:73:99:1027,0,995:12,22,17,22
chr1	21939493	.	G	C	1167.84	PASS	AC=1;AF=0.586;AN=2;DP=2517;FractionInformativeReads=1;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,41:79:99:1217,0,1054:28,10,32,9
chr1	21940109	.	C	T	674.74	PASS	AC=1;AF=0.5;AN=2;DP=81;FS=0.865;FractionInformativeReads=1;MQ=60;MQRankSum=-0.663;QD=8.33;ReadPosRankSum=0.176;SOR=0.866;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,35:81:99:703,0,1198:27,19,22,13
chr1	21940555	.	C	T	57.15	PASS	AC=1;AF=0.625;AN=2;DP=1533;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:642,0,641:7,15,7,17
chr1	21944352	.	A	G	511.03	PASS	AC=1;AF=0.574;AN=2;DP=1720;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,19:68:99:405,0,1292:33,16,11,8
chr1	21945530	.	C	T	685.22	PASS	AC=1;AF=0.5;AN=2;DP=428;MQ=60;set=variant13-variant21-variant24-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,59:102:99:1465,0,896:21,22,22,37
chr1	21946415	.	G	A	543.84	PASS	AC=1;AF=0.837;AN=2;DP=1156;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:222,0,362:9,2,6,2
chr1	21948936	.	G	C	66.22	PASS	AC=1;AF=0.892;AN=2;DP=374;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:59:59,0,121:2,3,1,2
chr1	21953348	.	G	T	1786.17	PASS	AC=1;AF=0.5;AN=2;DP=731;MQ=60;set=variant6-variant19-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,85:157:99:2273,0,1809:40,32,49,36
chr1	21953436	.	A	G	2890.98	PASS	AC=1;AF=0.852;AN=2;DP=6396;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:48,72:120:99:1826,0,1072:23,25,29,43
chr1	21961339	.	A	T	1434.36	PASS	AC=2;AF=1;AN=2;DP=3863;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2174,213,0:0,0,28,43
chr1	21975923	.	G	T	290.68	PASS	AC=1;AF=0.821;AN=2;DP=472;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:295,0,268:7,1,8,0
chr1	22032472	.	A	AT	283.32	PASS	AC=2;AF=1;AN=2;DP=459;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:214,18,0:0,0,4,2
chr1	22050649	.	C	A	880.68	PASS	AC=1;AF=0.775;AN=2;DP=4313;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,59:105:99:1776,0,1295:24,22,17,42
chr1	22050749	.	C	T	755.38	PASS	AC=1;AF=0.5;AN=2;DP=93;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.919;QD=8.12;ReadPosRankSum=-1.883;SOR=0.686;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,33:93:99:784,0,1630:29,31,16,17
chr1	22082923	.	G	A	144.4	PASS	AC=1;AF=0.75;AN=2;DP=430;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:96:370,0,96:3,0,9,1
chr1	22082967	.	CAA	CA,C,CAAA	238.1	PASS	AC=1,0,0;AF=0.397,0.256,0.013;AN=2;DP=1222;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:26:99:6,6,12,2
chr1	22109714	.	G	A	1779.96	PASS	AC=1;AF=0.5;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant13-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,77:137:99:1805,0,1420:34,26,43,34
chr1	22110072	.	A	G	879.57	PASS	AC=2;AF=1;AN=2;DP=2118;FS=0;MQ=60;MQRankSum=1.511;ReadPosRankSum=1.659;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1510,143,0:0,0,18,30
chr1	22139141	.	C	T	549.75	PASS	AC=1;AF=0.531;AN=2;DP=861;MQ=60;set=variant-variant9-variant10-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,32:67:99:747,0,906:15,20,13,19
chr1	22141030	.	C	T	2029.24	PASS	AC=1;AF=0.55;AN=2;DP=2072;MQ=60;set=variant8-variant13-variant14-variant22-variant24-variant32-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:91,102:193:99:2375,0,2216:44,47,47,55
chr1	22141206	.	A	C	4000.14	PASS	AC=1;AF=0.789;AN=2;DP=4317;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,65:135:99:1613,0,1697:32,38,27,38
chr1	22147764	.	A	G	757.25	PASS	AC=1;AF=0.5;AN=2;DP=1052;MQ=60;set=variant-variant7-variant8-variant10-variant12-variant13-variant17-variant18-variant20-variant23-variant25-variant26-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:555,0,801:20,7,16,4
chr1	22148164	.	G	A	1014.46	PASS	AC=1;AF=0.5;AN=2;DP=1148;MQ=60;set=variant-variant7-variant8-variant10-variant12-variant13-variant17-variant18-variant20-variant23-variant25-variant26-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,23:60:99:617,0,1111:9,28,4,19
chr1	22149935	.	T	C	4455.8	PASS	AC=2;AF=0.807;AN=2;DP=15828;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,341:341:99:10073,1019,0:0,0,173,168
chr1	22150257	.	C	T	982.87	PASS	AC=1;AF=0.653;AN=2;DP=5143;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:77,73:150:99:1843,0,1967:41,36,40,33
chr1	22155723	.	T	C	247.06	PASS	AC=2;AF=0.807;AN=2;DP=965;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1083,81,0:0,0,22,5
chr1	22156727	.	G	A	213.25	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.449;QD=11.22;ReadPosRankSum=-0.204;SOR=0.569;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:241,0,249:3,7,3,6
chr1	22157689	.	G	A	3397.03	PASS	AC=2;AF=0.807;AN=2;DP=14812;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,326:327:99:9765,968,0:1,0,155,171
chr1	22158157	.	A	G	3492.17	PASS	AC=1;AF=0.5;AN=2;DP=1054;FractionInformativeReads=1;MQ=60;set=variant24-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:119,108:227:99:2846,0,3202:56,63,50,58
chr1	22158363	.	G	A	896.55	PASS	AC=1;AF=0.657;AN=2;DP=2491;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,37:73:99:899,0,979:14,22,13,24
chr1	22158735	.	GATGC	G	593.46	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=1.421;FractionInformativeReads=0.95;MQ=60;MQRankSum=1.439;QD=14.84;ReadPosRankSum=0.352;SOR=1.172;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:631,0,1026:14,7,13,4
chr1	22159709	.	G	A	556.92	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.06;QD=10.13;ReadPosRankSum=0.162;SOR=0.852;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,23:55:99:585,0,848:21,11,16,7
chr1	22159774	.	G	A	880.5	PASS	AC=1;AF=0.5;AN=2;DP=393;MQ=60;set=variant24-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,41:92:99:974,0,1441:32,19,21,20
chr1	22160020	.	C	T	1922.22	PASS	AC=1;AF=0.5;AN=2;DP=1664;MQ=60;set=variant5-variant18-variant19-variant20-variant22-variant23-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:92,97:189:99:2359,0,2340:47,45,48,49
chr1	22160043	.	C	T	2017.07	PASS	AC=1;AF=0.5;AN=2;DP=776;MQ=60;set=variant24-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:95,84:179:99:2096,0,2202:43,52,40,44
chr1	22160140	.	T	C	862.54	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=1.134;FractionInformativeReads=1;MQ=60;MQRankSum=1.948;QD=14.38;ReadPosRankSum=-0.822;SOR=0.875;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:891,0,1217:8,24,6,22
chr1	22160148	.	C	T	580.97	PASS	AC=1;AF=0.653;AN=2;DP=2424;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,30:56:99:925,0,993:5,21,7,23
chr1	22161635	.	CT	C	930.35	PASS	AC=1;AF=0.5;AN=2;DP=502;set=variant24-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,53:95:99:1138,0,835:13,29,22,31
chr1	22162253	.	C	G	84.19	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant24-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:229,0,184:0,5,2,5
chr1	22163390	.	G	A	1624.19	PASS	AC=1;AF=0.5;AN=2;DP=549;FractionInformativeReads=1;MQ=60;set=variant24-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:89,68:157:99:1719,0,2164:47,42,40,28
chr1	22165901	.	A	G	2609.28	PASS	AC=1;AF=0.5;AN=2;DP=3968;MQ=60;set=variant7-variant8-variant12-variant17-variant18-variant20-variant24-variant25-variant26-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:99,124:223:99:3074,0,2377:60,39,73,51
chr1	22166108	.	C	T	681.21	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=9.386;FractionInformativeReads=1;MQ=60;MQRankSum=0.212;QD=13.9;ReadPosRankSum=-0.03;SOR=2.746;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,21:49:99:709,0,788:7,21,1,20
chr1	22167605	.	C	T	582.55	PASS	AC=1;AF=0.5;AN=2;DP=327;MQ=60;set=variant24-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,32:84:99:910,0,1479:36,16,23,9
chr1	22168216	.	C	T	805.83	PASS	AC=1;AF=0.789;AN=2;DP=3101;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:923,0,1315:19,32,14,25
chr1	22168310	.	A	G	491.9	PASS	AC=1;AF=0.5;AN=2;DP=539;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant12-variant17-variant18-variant20-variant24-variant25-variant26-variant32-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:638,0,359:4,10,5,14
chr1	22168801	.	T	C	3037.77	PASS	AC=1;AF=0.5;AN=2;DP=870;MQ=60;set=variant24-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:100,116:216:99:2922,0,2500:43,57,55,61
chr1	22168982	.	T	C	640.17	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant24-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:722,0,419:7,10,4,18
chr1	22169453	.	G	A	1528.51	PASS	AC=1;AF=0.5;AN=2;DP=150;FS=2.15;FractionInformativeReads=1;MQ=60;MQRankSum=0.964;QD=10.19;ReadPosRankSum=2.334;SOR=0.508;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:84,66:150:99:1557,0,2206:29,55,26,40
chr1	22169683	.	G	A	603.45	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=5.347;FractionInformativeReads=1;MQ=60;MQRankSum=-0.847;QD=17.75;ReadPosRankSum=-0.054;SOR=0.202;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,22:34:99:632,0,320:9,3,12,10
chr1	22169926	.	G	A	1535.88	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=0.7;FractionInformativeReads=1;MQ=60;MQRankSum=-1.391;QD=13.36;ReadPosRankSum=0.874;SOR=0.571;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,63:115:99:1564,0,1294:23,29,30,33
chr1	22172458	.	T	C	47.19	PASS	AC=2;AF=0.821;AN=2;DP=686;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:502,42,0:0,0,11,3
chr1	22174426	.	T	G	2634.23	PASS	AC=1;AF=0.5;AN=2;DP=6828;MQ=60;set=variant-variant7-variant8-variant10-variant12-variant13-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,156:300:99:3780,0,3554:74,70,70,86
chr1	22174600	.	A	G	1466.15	PASS	AC=2;AF=0.807;AN=2;DP=5238;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3159,291,0:0,0,37,60
chr1	22176831	.	C	T	1775.68	PASS	AC=1;AF=0.5;AN=2;DP=1436;MQ=60;set=variant7-variant8-variant12-variant17-variant18-variant20-variant25-variant26-variant32-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,67:122:99:1947,0,1613:23,32,25,42
chr1	22177119	.	A	G	266.75	PASS	AC=1;AF=0.657;AN=2;DP=944;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:406,0,198:2,7,4,10
chr1	22179673	.	T	C	1294.29	PASS	AC=1;AF=0.653;AN=2;DP=4103;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,59:102:99:1777,0,1202:10,33,15,44
chr1	22180548	.	T	C	752.16	PASS	AC=2;AF=0.814;AN=2;DP=4441;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3513,342,0:0,0,51,63
chr1	22183471	.	A	C	516.4	PASS	AC=2;AF=0.807;AN=2;DP=3047;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1897,168,0:0,0,39,17
chr1	22183739	.	A	G	2671.26	PASS	AC=2;AF=0.708;AN=2;DP=8784;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,222:222:99:6779,665,0:0,0,113,109
chr1	22186234	.	A	G	1635.47	PASS	AC=1;AF=0.977;AN=2;DP=2092;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:669,0,933:17,12,14,9
chr1	22188328	.	C	T	2247.86	PASS	AC=1;AF=0.5;AN=2;DP=354;MQ=60;set=variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,82:191:99:1924,0,2843:58,51,49,33
chr1	22191454	.	G	A	2395.87	PASS	AC=1;AF=0.762;AN=2;DP=9068;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,98:200:99:2511,0,2588:42,60,38,60
chr1	22199081	.	A	T	1974.59	PASS	AC=2;AF=1;AN=2;DP=3900;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2175,203,0:0,0,36,32
chr1	22199245	.	C	T	1730.45	PASS	AC=2;AF=0.743;AN=2;DP=4772;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4082,428,0:0,0,70,73
chr1	22199821	.	G	A	1308.45	PASS	AC=2;AF=0.872;AN=2;DP=2495;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1439,128,0:0,0,29,14
chr1	22200067	.	A	G	491.86	PASS	AC=1;AF=0.7;AN=2;DP=2685;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:835,0,665:9,17,13,18
chr1	22200082	.	T	C	1176.21	PASS	AC=2;AF=1;AN=2;DP=2486;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1657,150,0:0,0,18,32
chr1	22200835	.	C	G	946.74	PASS	AC=2;AF=1;AN=2;DP=1369;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1098,102,0:0,0,19,15
chr1	22201438	.	C	T	1669.88	PASS	AC=1;AF=0.55;AN=2;DP=1488;MQ=60;set=variant5-variant18-variant20-variant21-variant22-variant23-variant28-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:93,58:151:99:1333,0,2404:46,47,33,25
chr1	22202109	.	C	T	2571.24	PASS	AC=2;AF=1;AN=2;DP=3957;FS=0;MQ=60;MQRankSum=1.447;ReadPosRankSum=0.925;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2657,243,0:0,0,59,22
chr1	22203259	.	A	G	111	PASS	AC=2;AF=0.731;AN=2;DP=1306;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1429,111,0:0,0,5,32
chr1	22205408	.	T	C	230.25	PASS	AC=2;AF=1;AN=2;DP=595;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:475,39,0:0,0,10,3
chr1	22205466	.	T	C	340.68	PASS	AC=2;AF=1;AN=2;DP=1188;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:882,72,0:0,0,14,10
chr1	22206649	.	T	C	3462.23	PASS	AC=2;AF=1;AN=2;DP=5477;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3630,331,0:0,0,49,62
chr1	22206942	.	G	A	6380.41	PASS	AC=2;AF=1;AN=2;DP=11056;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,250:251:99:7805,739,0:1,0,117,133
chr1	22207235	.	T	C	2383.37	PASS	AC=2;AF=1;AN=2;DP=4546;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:3066,276,0:0,0,41,51
chr1	22207804	.	ACCCAGGGTGGCAG	A	4260.86	PASS	AC=2;AF=1;AN=2;DP=6434;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:6785,463,0:0,0,86,67
chr1	22208030	.	C	T	1463.69	PASS	AC=2;AF=0.989;AN=2;DP=2241;FS=0;MQ=60;MQRankSum=0.974;ReadPosRankSum=2.15;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1682,144,0:0,0,13,35
chr1	22211222	.	T	C	6222.06	PASS	AC=2;AF=0.886;AN=2;DP=8824;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,207:207:99:6406,620,0:0,0,121,86
chr1	22213661	.	G	A	1418.7	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=1.852;FractionInformativeReads=1;MQ=60;MQRankSum=-0.808;QD=14.33;ReadPosRankSum=1.641;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,50:99:99:1447,0,1350:35,14,38,12
chr1	22214046	.	C	T	1659.14	PASS	AC=1;AF=0.55;AN=2;DP=1641;MQ=60;set=variant5-variant18-variant20-variant21-variant22-variant23-variant28-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,82:151:99:2233,0,1814:35,34,41,41
chr1	22214371	.	T	C	1176.89	PASS	AC=1;AF=0.5;AN=2;DP=179;FractionInformativeReads=1;MQ=60;set=variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,59:88:99:1587,0,650:14,15,32,27
chr1	22215088	.	T	C	4137.26	PASS	AC=2;AF=1;AN=2;DP=5899;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3728,362,0:0,0,79,42
chr1	22216574	.	C	A	652.52	PASS	AC=2;AF=0.731;AN=2;DP=4047;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2689,256,0:0,0,31,55
chr1	22216604	.	C	G	573.46	PASS	AC=2;AF=0.731;AN=2;DP=3376;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2576,233,0:0,0,28,50
chr1	22216831	.	G	A	930.05	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.743;QD=17.22;ReadPosRankSum=0.045;SOR=0.625;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,34:54:99:958,0,479:11,9,18,16
chr1	22217108	.	G	A	3996.52	PASS	AC=2;AF=1;AN=2;DP=8719;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,217:217:99:6417,647,0:0,0,97,120
chr1	22299656	.	T	G	2090.29	PASS	AC=1;AF=0.737;AN=2;DP=1831;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:806,0,649:17,8,21,7
chr1	22304428	.	C	G	411.52	PASS	AC=2;AF=1;AN=2;DP=666;FS=0;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-variant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:221,15,0:0,0,3,2
chr1	22304429	.	C	T	411.52	PASS	AC=2;AF=1;AN=2;DP=675;FS=0;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-variant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:221,15,0:0,0,3,2
chr1	22304463	.	A	G	632.54	PASS	AC=2;AF=0.939;AN=2;DP=803;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant4-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant14-variant15-variant17-filterInvariant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:462,36,0:0,0,9,3
chr1	22304712	.	A	G	1569.01	PASS	AC=2;AF=0.793;AN=2;DP=1636;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1641,123,0:0,0,21,20
chr1	22307340	.	C	T	1079.65	PASS	AC=2;AF=0.966;AN=2;DP=1454;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1412,116,0:0,0,33,6
chr1	22307358	.	C	G	1413.84	PASS	AC=2;AF=0.966;AN=2;DP=2313;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1913,159,0:0,0,41,12
chr1	22307538	.	C	T	3489.79	PASS	AC=2;AF=0.989;AN=2;DP=6013;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4197,401,0:0,0,53,81
chr1	22310139	.	T	G	5088.23	PASS	AC=2;AF=0.966;AN=2;DP=5715;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:6082,409,0:0,0,106,28
chr1	22310145	.	C	T	5286.66	PASS	AC=2;AF=0.966;AN=2;DP=6223;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:6312,433,0:0,0,112,32
chr1	22310262	.	G	C	9192.96	PASS	AC=2;AF=0.966;AN=2;DP=19163;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,411:411:99:12059,1231,0:0,0,198,213
chr1	22310411	.	A	G	2301.01	PASS	AC=2;AF=0.943;AN=2;DP=3931;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3948,298,0:0,0,31,66
chr1	22310413	.	A	G	2301.01	PASS	AC=1;AF=0.884;AN=2;DP=3747;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,50:98:99:1505,0,1384:17,31,14,36
chr1	22310519	.	G	A	1589.33	PASS	AC=1;AF=0.5;AN=2;DP=453;FractionInformativeReads=1;set=variant13-variant17-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,70:134:99:2170,0,2030:51,13,47,23
chr1	22310662	.	G	T	8422.62	PASS	AC=2;AF=0.932;AN=2;DP=18598;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,382:384:99:11577,1101,0:0,2,181,201
chr1	22310674	.	C	T	8334.33	PASS	AC=2;AF=0.966;AN=2;DP=17648;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,370:370:99:11307,1107,0:0,0,162,208
chr1	22310701	.	C	T	4367.13	PASS	AC=1;AF=0.5;AN=2;DP=591;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:155,178:333:99:4395,0,3828:64,91,71,107
chr1	22310725	.	G	C	5771.42	PASS	AC=2;AF=0.932;AN=2;DP=11307;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,258:259:99:8104,756,0:1,0,91,167
chr1	22310824	.	T	C	982.03	PASS	AC=2;AF=0.989;AN=2;DP=1615;MQRankSum=0.147;ReadPosRankSum=1.292;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1724,126,0:0,0,2,40
chr1	22313017	.	G	T	2348.1	PASS	AC=1;AF=0.607;AN=2;DP=2470;FractionInformativeReads=1;set=variant3-variant5-variant8-variant18-variant20-variant21-variant22-variant28-variant29-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,104:187:99:2581,0,1906:51,32,65,39
chr1	22313161	.	T	C	2287.51	PASS	AC=2;AF=0.966;AN=2;DP=7176;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4684,438,0:0,0,53,93
chr1	22313197	.	C	A	1227.56	PASS	AC=2;AF=0.845;AN=2;DP=4251;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3172,280,0:0,0,24,70
chr1	22313469	.	G	C	326.23	PASS	AC=1;AF=0.571;AN=2;DP=439;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant8-variant12-variant13-variant16-variant17-variant21-variant24-variant26-variant27-variant29-variant31-variant33-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:375,0,376:10,2,10,0
chr1	22315662	.	C	T	145.59	PASS	AC=1;AF=0.5;AN=2;DP=140;FractionInformativeReads=1;set=variant4-variant5-variant6-variant12-variant13-variant16-variant21-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:141,0,319:4,5,4,2
chr1	22315684	.	C	T	169.58	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;set=variant17-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:177,0,271:4,4,3,5
chr1	22315710	.	G	A	50.44	PASS	AC=1;AF=0.5;AN=2;DP=135;set=variant4-variant5-variant12-variant13-variant16-variant21-variant26-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:136,0,263:4,7,2,3
chr1	22315738	.	C	T	207.04	PASS	AC=1;AF=0.851;AN=2;DP=331;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:201,0,190:3,5,2,6
chr1	22324705	.	T	C	2376.38	PASS	AC=1;AF=0.604;AN=2;DP=4207;set=variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant24-variant26-variant27-variant29-variant31-variant33-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,53:152:99:1194,0,2664:46,53,23,30
chr1	22325016	.	T	C	80.13	PASS	AC=1;AF=0.625;AN=2;DP=336;FractionInformativeReads=1;set=variant2-variant4-variant5-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant24-variant26-variant27-variant29-variant31-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:222,0,300:3,8,2,6
chr1	22325061	.	G	A	286.77	PASS	AC=1;AF=0.786;AN=2;DP=315;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:149,0,114:0,4,2,3
chr1	22328207	.	G	A	1679.8	PASS	AC=1;AF=0.5;AN=2;DP=735;MQ=60;set=variant13-variant17-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:100,92:192:99:2245,0,2791:48,52,39,53
chr1	22329062	.	C	G	3049.13	PASS	AC=1;AF=0.5;AN=2;DP=13932;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:177,127:304:99:4746,0,8632:124,53,82,45
chr1	22329063	.	C	T	3049.13	PASS	AC=1;AF=0.5;AN=2;DP=14150;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:179,130:309:99:4746,0,8632:126,53,82,48
chr1	22329414	.	G	A	2395.51	PASS	AC=1;AF=0.756;AN=2;DP=2956;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,39:81:99:1026,0,1638:24,18,20,19
chr1	22329417	.	T	C	76.63	PASS	AC=1;AF=0.591;AN=2;DP=704;FractionInformativeReads=1;set=filterInvariant2-variant13-variant14-variant15-variant17-variant26-variant27-variant29-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:1030,0,1596:23,18,24,17
chr1	22329645	.	T	C	214.75	PASS	AC=1;AF=0.611;AN=2;DP=874;set=variant4-variant5-variant6-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant24-variant26-variant27-variant31-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:953,0,888:14,23,6,25
chr1	22332043	.	T	A	1894.1	PASS	AC=1;AF=0.5;AN=2;DP=285;set=variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,57:134:99:1356,0,2037:43,34,35,22
chr1	22332319	.	G	A	1058.79	PASS	AC=1;AF=0.5;AN=2;DP=4189;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,20:74:99:713,0,3192:27,27,10,10
chr1	22332332	.	T	C	1217.72	PASS	AC=1;AF=0.5;AN=2;DP=4438;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,25:81:99:878,0,3240:29,27,14,11
chr1	22332333	.	G	A	1223.74	PASS	AC=1;AF=0.5;AN=2;DP=4459;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:57,25:82:99:878,0,3240:30,27,14,11
chr1	22332411	.	A	G	842.63	PASS	AC=1;AF=0.5;AN=2;DP=4695;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,34:87:99:651,0,1339:21,32,16,18
chr1	22333419	.	T	C	4420.76	PASS	AC=1;AF=0.5;AN=2;DP=834;set=variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:213,204:417:99:4983,0,5248:118,95,109,95
chr1	22333595	.	G	A	2130.01	PASS	AC=1;AF=0.731;AN=2;DP=4186;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,70:146:99:2204,0,2318:23,53,17,53
chr1	22333954	.	C	T	1944.14	PASS	AC=1;AF=0.5;AN=2;DP=565;MQ=60;set=variant13-variant17-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,66:134:99:1925,0,1815:21,47,14,52
chr1	22336277	.	C	G	3553.56	PASS	AC=2;AF=0.977;AN=2;DP=8843;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,192:192:99:5902,575,0:0,0,93,99
chr1	22336371	.	C	A	1465.68	PASS	AC=2;AF=0.793;AN=2;DP=3942;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3114,298,0:0,0,35,65
chr1	22336810	.	C	CA	479.74	PASS	AC=1;AF=0.731;AN=2;DP=1719;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:303,0,219:3,7,4,9
chr1	22379088	.	G	A	1237.64	PASS	AC=2;AF=0.775;AN=2;DP=2919;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2128,219,0:0,0,44,30
chr1	22405379	.	CTT	C,CT,CTTT	297.03	PASS	AC=0,1,0;AF=0.135,0.554,0.054;AN=2;DP=961;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:25:24:1,4,0,20
chr1	22408106	.	G	A	3488.62	PASS	AC=2;AF=0.919;AN=2;DP=4751;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,109:110:99:3408,304,0:1,0,57,52
chr1	22413099	.	G	A	1552.61	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=3.103;FractionInformativeReads=1;MQ=60;MQRankSum=-0.317;QD=11.67;ReadPosRankSum=-0.398;SOR=0.582;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,66:133:99:1581,0,1837:37,30,32,34
chr1	22447148	.	G	C	1209.43	PASS	AC=2;AF=0.919;AN=2;DP=1095;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1002,75,0:0,0,3,22
chr1	22447645	.	C	CTG	178.89	PASS	AC=2;AF=0.826;AN=2;DP=975;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:99:1466,99,0:0,0,25,6
chr1	22592949	.	A	G	217.65	PASS	AC=1;AF=0.5;AN=2;DP=52;FractionInformativeReads=1;MQ=60;set=variant6-variant23-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:175,0,192:2,4,1,5
chr1	22778239	.	G	GC	100.07	PASS	AC=1;AF=0.632;AN=2;DP=273;MQ=60;set=variant4-variant6-filterInvariant7-variant12-variant22-variant24-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:209,0,178:5,2,6,2
chr1	22778456	.	C	A	593.71	PASS	AC=1;AF=0.619;AN=2;DP=1301;MQ=60;set=variant4-variant6-variant7-variant9-variant12-variant14-variant18-variant22-variant24-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,32:53:99:792,0,491:7,14,13,19
chr1	22816233	.	C	T	92.16	PASS	AC=1;AF=0.625;AN=2;DP=229;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant9-variant12-variant14-variant18-variant22-variant24-variant27-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:266,0,220:5,1,7,0
chr1	22816262	.	T	C	137.93	PASS	AC=2;AF=0.736;AN=2;DP=708;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:68:727,68,0:0,0,17,6
chr1	22827931	.	C	T	803.09	PASS	AC=1;AF=0.619;AN=2;DP=1595;MQ=60;set=variant4-variant6-variant7-variant9-variant12-variant14-variant18-variant22-variant24-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,37:79:99:874,0,1065:25,17,24,13
chr1	22832743	.	A	T	287.71	PASS	AC=2;AF=0.736;AN=2;DP=1081;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:812,69,0:0,0,5,18
chr1	22835677	.	A	G	1891.77	PASS	AC=2;AF=0.795;AN=2;DP=4320;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3654,330,0:0,0,42,68
chr1	22837586	.	CTT	CT,C,CTTT	481.62	PASS	AC=1,0,0;AF=0.513,0.013,0.013;AN=2;DP=2042;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:39:99:12,9,12,6
chr1	22837849	.	C	T	745.56	PASS	AC=1;AF=0.667;AN=2;DP=591;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant16-variant18-variant22-variant24-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,23:34:99:724,0,309:3,8,7,16
chr1	22846452	.	C	G	515.5	PASS	AC=1;AF=0.673;AN=2;DP=791;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant16-variant18-variant22-variant24-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,25:40:99:848,0,427:12,3,22,3
chr1	22846709	.	G	A	917.45	PASS	AC=2;AF=1;AN=2;DP=2483;FS=0;MQ=60;MQRankSum=1.253;ReadPosRankSum=1.253;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2423,240,0:0,0,29,51
chr1	22849003	.	A	C	786.45	PASS	AC=1;AF=0.625;AN=2;DP=930;MQ=60;set=variant-variant5-variant6-variant9-variant16-variant18-variant19-variant20-variant23-variant25-variant26-variant29-variant30-variant31-variant33-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:757,0,612:8,19,6,20
chr1	22852715	.	G	C	418.97	PASS	AC=1;AF=0.625;AN=2;DP=1675;MQ=60;set=variant-variant5-variant6-variant9-variant16-variant18-variant19-variant20-variant23-variant25-variant26-variant29-variant30-variant31-variant33-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,50:94:99:1249,0,1075:25,19,24,26
chr1	22852880	.	G	C	1421.77	PASS	AC=1;AF=0.5;AN=2;DP=476;MQ=60;set=variant6-variant12-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,47:91:99:1257,0,1213:24,20,23,24
chr1	22853141	.	G	A	413.68	PASS	AC=1;AF=0.559;AN=2;DP=1067;MQ=60;set=variant-variant5-variant9-variant16-variant18-variant19-variant20-variant23-variant25-variant26-variant30-variant31-variant33-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,29:69:99:868,0,1102:18,22,14,15
chr1	22854927	.	AAAAC	A	4819.36	PASS	AC=1;AF=0.673;AN=2;DP=2691;set=variant2-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant16-variant18-variant22-variant24-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,42:88:99:1605,0,2458:22,24,21,21
chr1	22855441	.	C	T	2370.8	PASS	AC=1;AF=0.64;AN=2;DP=1692;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant16-variant18-variant22-variant24-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,22:60:99:567,0,1031:21,17,14,8
chr1	22856067	.	G	A	409.42	PASS	AC=1;AF=0.5;AN=2;DP=63;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:499,0,449:7,9,6,10
chr1	22856601	.	T	C	437.41	PASS	AC=1;AF=0.625;AN=2;DP=959;MQ=60;set=variant-variant5-variant6-variant9-variant16-variant18-variant19-variant20-variant23-variant25-variant26-variant29-variant30-variant31-variant33-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:651,0,455:6,14,9,13
chr1	22912819	.	T	C	605.81	PASS	AC=2;AF=0.989;AN=2;DP=951;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.506;ReadPosRankSum=-0.985;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:738,78,0:0,0,16,10
chr1	22912865	.	A	G	575.11	PASS	AC=1;AF=0.58;AN=2;DP=739;set=variant2-variant4-variant6-variant10-variant11-variant13-variant14-variant16-variant19-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:288,0,409:9,7,8,4
chr1	22913153	.	T	C	5946.81	PASS	AC=1;AF=0.58;AN=2;DP=4680;MQ=60;set=variant2-variant4-variant6-variant10-variant11-variant13-variant14-variant16-variant19-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,81:170:99:1954,0,2038:44,45,37,44
chr1	22913274	.	G	GGGGT	148.75	PASS	AC=1;AF=0.542;AN=2;DP=448;MQ=60;set=variant2-variant10-variant11-variant14-variant16-variant26-variant30-variant31-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:230,0,768:3,12,2,8
chr1	22915753	.	T	C	4238.44	PASS	AC=1;AF=0.583;AN=2;DP=3386;MQ=60;set=variant2-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant16-variant19-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,80:141:99:2061,0,1444:28,33,36,44
chr1	22915978	.	A	T	1444.3	PASS	AC=1;AF=0.577;AN=2;DP=1580;MQ=60;set=variant2-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant16-variant19-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,40:73:99:997,0,718:13,20,17,23
chr1	22919904	.	C	T	3734.11	PASS	AC=1;AF=0.568;AN=2;DP=7074;MQ=60;set=variant2-variant3-variant5-variant8-variant11-variant13-variant14-variant17-variant19-variant22-variant24-variant25-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:146,176:322:99:4144,0,3432:88,58,102,74
chr1	22922546	.	G	A	3161.15	PASS	AC=1;AF=0.542;AN=2;DP=2609;MQ=60;set=variant2-variant3-variant5-variant8-variant11-variant14-variant16-variant17-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,50:119:99:1957,0,3321:44,25,34,16
chr1	22922560	.	G	A	3942.33	PASS	AC=1;AF=0.607;AN=2;DP=3741;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,65:147:99:2199,0,3662:50,32,41,24
chr1	22924464	.	T	C	199.52	PASS	AC=1;AF=0.531;AN=2;DP=650;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant11-variant14-variant16-variant17-variant22-variant26-variant28-variant29-variant30-variant32-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,16:41:99:437,0,881:6,19,4,12
chr1	22925292	.	C	G	4989.23	PASS	AC=2;AF=1;AN=2;DP=7907;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:5230,496,0:0,0,109,57
chr1	22927314	.	A	G	7615.19	PASS	AC=1;AF=0.607;AN=2;DP=7536;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:145,115:260:99:3067,0,3844:74,71,50,65
chr1	22927326	.	T	G	7015.56	PASS	AC=1;AF=0.56;AN=2;DP=6476;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:141,115:256:99:3058,0,3627:76,65,51,64
chr1	22927672	.	G	A	1632.71	PASS	AC=1;AF=0.542;AN=2;DP=1085;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant13-variant14-variant17-variant22-variant28-variant29-variant30-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:65,38:103:99:904,0,1794:32,33,14,24
chr1	22928265	.	A	G	1508.86	PASS	AC=2;AF=0.655;AN=2;DP=2380;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2737,278,0:0,0,41,52
chr1	22928349	.	A	G	1246.15	PASS	AC=1;AF=0.558;AN=2;DP=1543;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:645,0,829:10,16,10,14
chr1	22928504	.	A	G	1673.04	PASS	AC=1;AF=0.542;AN=2;DP=1367;MQ=60;set=variant3-variant5-variant13-variant14-variant17-variant22-variant28-variant29-variant30-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,55:99:99:1396,0,1142:24,20,32,23
chr1	22928643	.	C	T	1715.14	PASS	AC=1;AF=0.542;AN=2;DP=1497;MQ=60;set=variant3-variant5-variant13-variant14-variant17-variant22-variant28-variant29-variant30-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,64:140:99:1614,0,1829:40,36,29,35
chr1	22928813	.	A	G	2621.91	PASS	AC=1;AF=0.558;AN=2;DP=3143;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,47:92:99:1269,0,1290:25,20,27,20
chr1	22928895	.	C	T	2132.1	PASS	AC=1;AF=0.542;AN=2;DP=1696;MQ=60;set=variant3-variant5-variant13-variant14-variant17-variant22-variant28-variant29-variant30-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,67:135:99:1578,0,1650:33,35,34,33
chr1	22929863	.	T	TG,TGG	422.39	PASS	AC=0,1;AF=0.5,0.045;AN=2;DP=362;MQ=60;set=variant3-variant5-variant13-variant14-variant17-variant22-variant28-variant29-variant32-variant36-variant41	GT:DP:GQ:SB	0/2:33:99:9,11,9,4
chr1	22965438	.	A	G	1508.68	PASS	AC=2;AF=0.617;AN=2;DP=3519;MQ=60;set=variant3-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant16-variant17-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3147,300,0:0,0,63,37
chr1	22966227	.	T	G	118.52	PASS	AC=2;AF=0.667;AN=2;DP=234;FractionInformativeReads=1;set=variant3-variant5-variant7-variant11-variant12-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant28-variant29-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:480,42,0:0,0,4,10
chr1	22970642	.	C	T	1833.49	PASS	AC=1;AF=0.55;AN=2;DP=2972;MQ=60;set=variant2-variant3-variant5-variant7-variant11-variant12-variant13-variant14-variant17-variant22-variant23-variant28-variant29-variant30-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:83,64:147:99:1422,0,2041:41,42,40,24
chr1	22970828	.	G	T	483.84	PASS	AC=2;AF=0.656;AN=2;DP=2147;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2276,226,0:0,0,29,47
chr1	22970925	.	T	C	178.74	PASS	AC=2;AF=0.586;AN=2;DP=670;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:784,69,0:0,0,8,15
chr1	22971019	.	T	C	131.95	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:66:66,0,233:2,4,1,1
chr1	22974297	.	C	A	706.44	PASS	AC=2;AF=0.607;AN=2;DP=2568;MQ=60;set=variant2-variant3-variant5-variant7-variant9-variant11-variant12-variant14-variant16-variant17-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2101,208,0:0,0,26,44
chr1	22974379	.	CCCACCAGATGGACTTCT	C	647.68	PASS	AC=2;AF=0.596;AN=2;DP=1349;MQ=60;set=variant2-variant3-variant5-variant7-variant11-variant12-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:92:1245,92,0:0,0,10,20
chr1	22974533	.	CTT	CT,C,CTTT	127.82	PASS	AC=0,2,0;AF=0.202,0.405,0.012;AN=2;DP=4096;set=filterInvariant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-filterInvariant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	2/2:72:99:2,0,40,30
chr1	22979655	.	T	G	750.67	PASS	AC=2;AF=0.656;AN=2;DP=1545;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2127,191,0:0,0,31,33
chr1	22979899	.	T	C	143.78	PASS	AC=2;AF=0.667;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:293,24,0:0,0,1,7
chr1	22985785	.	AGATGGATGGATGGATGGATGGATGGATGGATGGATGCAGATGGAGGAATAGAGAGATGGATG	AGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGCAGATGGAGGAATAGAGAGATGGATG,AGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGCAGATGGAGGAATAGAGAGATGGATG,AGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGCAGATGGAGGAATAGAGAGATGGATG,AGATGGATGGATGGATGGATGGATGGATGGATGCAGATGGAGGAATAGAGAGATGGATG,A	223.28	PASS	AC=2,0,0,0,0;AF=0.333,0.03,0.121,0.121,0.03;AN=2;DP=588;set=variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:14:51:0,0,11,3
chr1	22985839	.	AGATGGATGGATGGATG	AGATGGATGGATG,AGATGGATGGATGGATGGATG,A	790.53	PASS	AC=1,0,0;AF=0.576,0.091,0.015;AN=2;DP=1327;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:32:99:12,5,11,4
chr1	22987958	.	A	G	2213.71	PASS	AC=2;AF=0.989;AN=2;DP=3965;MQ=60;MQRankSum=-1.324;ReadPosRankSum=1.276;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3036,289,0:0,0,40,57
chr1	23046004	.	G	A	1181.22	PASS	AC=1;AF=0.5;AN=2;DP=104;FS=4.904;FractionInformativeReads=1;MQ=60;MQRankSum=-1.597;QD=11.36;ReadPosRankSum=-0.257;SOR=1.184;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1209,0,1278:25,29,18,32
chr1	23101688	.	T	G	1033.4	PASS	AC=1;AF=0.849;AN=2;DP=3059;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,24:56:99:762,0,811:19,13,17,7
chr1	23107811	.	TAA	TA,T	289.15	PASS	AC=1,0;AF=0.512,0.256;AN=2;DP=1450;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:29:34:4,3,19,3
chr1	23108089	.	A	G	52.74	PASS	AC=1;AF=0.829;AN=2;DP=554;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:302,0,213:2,6,1,8
chr1	23216712	.	T	C	1179.27	PASS	AC=1;AF=0.656;AN=2;DP=1388;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,14:47:99:293,0,709:17,16,7,7
chr1	23219187	.	C	T	1368.17	PASS	AC=1;AF=0.65;AN=2;DP=1194;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:472,0,497:12,1,14,3
chr1	23219493	.	T	C	6536.6	PASS	AC=2;AF=1;AN=2;DP=13927;FS=0;MQ=60;MQRankSum=1.569;ReadPosRankSum=1.002;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,316:316:99:9480,945,0:0,0,149,167
chr1	23223116	.	C	T	827.84	PASS	AC=1;AF=0.65;AN=2;DP=1846;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,28:72:99:742,0,1181:17,27,7,21
chr1	23232400	.	C	T	827.77	PASS	AC=1;AF=0.667;AN=2;DP=941;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:470,0,399:10,2,13,1
chr1	23236826	.	C	T	1400.29	PASS	AC=1;AF=0.652;AN=2;DP=2109;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:1266,0,756:18,14,27,16
chr1	23236932	.	G	A	1477.67	PASS	AC=1;AF=0.5;AN=2;DP=127;FS=3.191;FractionInformativeReads=1;MQ=60;MQRankSum=-1.039;QD=11.64;ReadPosRankSum=-3.012;SOR=0.706;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,62:127:99:1506,0,1655:30,35,33,29
chr1	23285678	.	A	G	61.77	PASS	AC=2;AF=0.932;AN=2;DP=302;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,0,5
chr1	23342193	.	C	G	79.46	PASS	AC=1;AF=0.625;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant8-variant9-variant11-variant16-variant18-variant19-variant20-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:37:81,0,37:1,0,2,0
chr1	23342362	.	A	G	1759.42	PASS	AC=2;AF=0.813;AN=2;DP=2327;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1778,189,0:0,0,36,27
chr1	23356864	.	G	A	44.51	PASS	AC=1;AF=0.692;AN=2;DP=259;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant10-variant13-variant15-variant16-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,2:9:60:60,0,242:6,1,2,0
chr1	23380198	.	A	G	1049.64	PASS	AC=2;AF=0.805;AN=2;DP=1016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:697,63,0:0,0,16,5
chr1	23385826	.	CTT	C	1881.64	PASS	AC=1;AF=0.655;AN=2;DP=2407;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,38:65:99:1479,0,1118:16,11,19,19
chr1	23399932	.	C	T	2627.96	PASS	AC=2;AF=0.805;AN=2;DP=2674;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1918,185,0:0,0,23,39
chr1	23405794	.	A	C	1835.22	PASS	AC=2;AF=0.786;AN=2;DP=2365;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1543,135,0:0,0,20,25
chr1	23405872	.	T	C	1089.12	PASS	AC=1;AF=0.605;AN=2;DP=1058;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant8-variant9-variant11-variant16-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:697,0,729:14,9,12,8
chr1	23409538	.	G	A	516.04	PASS	AC=1;AF=0.563;AN=2;DP=758;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant9-variant11-variant14-variant16-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:629,0,466:12,2,16,2
chr1	23410137	.	T	TG	1236.49	PASS	AC=1;AF=0.5;AN=2;DP=2631;set=variant7-variant10-variant16-variant17-variant23-variant25-variant26-variant27-variant32-variant33-variant35-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,75:153:99:1488,0,1705:47,31,40,35
chr1	23410138	.	T	G	4461.2	PASS	AC=1;AF=0.684;AN=2;DP=7276;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,69:155:99:1443,0,1934:46,40,42,27
chr1	23410140	.	G	T	3821.42	PASS	AC=2;AF=0.805;AN=2;DP=7845;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:6,150:156:99:4769,301,0:3,3,86,64
chr1	23410721	.	A	T	1190.34	PASS	AC=2;AF=0.817;AN=2;DP=1474;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:92:973,92,0:0,0,15,16
chr1	23410742	.	A	C	1124.85	PASS	AC=2;AF=0.817;AN=2;DP=1483;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1050,96,0:0,0,18,14
chr1	23411225	.	T	TC	17027.1	PASS	AC=2;AF=0.78;AN=2;DP=20363;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,455:456:99:13792,1361,0:1,0,216,239
chr1	23413027	.	T	C	880.17	PASS	AC=2;AF=0.805;AN=2;DP=1647;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1491,141,0:0,0,21,26
chr1	23413458	.	T	G	869.67	PASS	AC=2;AF=0.805;AN=2;DP=1924;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1415,138,0:0,0,26,20
chr1	23413707	.	T	C	580.87	PASS	AC=2;AF=0.793;AN=2;DP=1385;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1258,129,0:0,0,19,24
chr1	23415102	.	T	C	863.91	PASS	AC=2;AF=0.805;AN=2;DP=1442;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:974,96,0:0,0,18,14
chr1	23418153	.	C	T	7204.82	PASS	AC=2;AF=0.817;AN=2;DP=8265;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5887,545,0:0,0,82,100
chr1	23419261	.	G	A,GTCCA	3863.21	PASS	AC=2,0;AF=0.714,0.071;AN=2;DP=965;MQ=60;set=variant35-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	1/1:132:99:0,1,55,76
chr1	23419374	.	G	T	3057.47	PASS	AC=2;AF=0.805;AN=2;DP=4812;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:5478,370,0:0,0,67,56
chr1	23419383	.	C	T	3092.39	PASS	AC=2;AF=0.805;AN=2;DP=4950;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:5575,382,0:0,0,67,59
chr1	23419855	.	T	C	4142.99	PASS	AC=2;AF=0.817;AN=2;DP=5140;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4053,392,0:0,0,63,68
chr1	23435669	.	T	C	203.67	PASS	AC=1;AF=0.5;AN=2;DP=173;MQ=60;set=variant7-variant10-variant16-variant17-variant23-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,120:1,3,0,3
chr1	23518524	.	T	C	447.93	PASS	AC=1;AF=0.661;AN=2;DP=981;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:339,0,498:11,5,8,5
chr1	23519328	.	C	CAAAA,CAA	65.12	PASS	AC=0,1;AF=0.071,0.714;AN=2;DP=33;FS=0;MQ=60;set=variant2-variant10-variant13-variant26-variant31-variant36-variant41	GT:DP:GQ:SB	0/2:4:22:1,0,2,1
chr1	23519477	.	C	T	38.51	PASS	AC=1;AF=0.7;AN=2;DP=407;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:148,0,233:5,2,1,4
chr1	23519508	.	T	TA	193.12	PASS	AC=1;AF=0.629;AN=2;DP=728;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:127,0,129:5,2,5,2
chr1	23632626	.	G	C	5920.58	PASS	AC=2;AF=0.864;AN=2;DP=6704;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4472,440,0:0,0,79,68
chr1	23633278	.	G	A	4604.01	PASS	AC=2;AF=0.989;AN=2;DP=5728;MQRankSum=-1.335;ReadPosRankSum=-2.619;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3984,380,0:0,0,89,38
chr1	23634406	.	TA	T	1281.83	PASS	AC=1;AF=0.524;AN=2;DP=2443;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant10-variant12-variant13-variant17-variant18-variant22-filterInvariant25-variant27-variant30-variant31-variant33-variant34-variant35-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,61:90:99:1315,0,430:14,15,33,28
chr1	23636015	.	GTT	GT,G	1784.03	PASS	AC=2,0;AF=0.761,0.216;AN=2;DP=4309;set=Intersection	GT:DP:GQ:SB	1/1:68:78:2,3,27,36
chr1	23664511	.	T	G	722.18	PASS	AC=2;AF=0.731;AN=2;DP=789;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:620,51,0:0,0,3,14
chr1	23670801	.	CT	C	1343.92	PASS	AC=1;AF=0.568;AN=2;DP=2334;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant12-variant13-variant17-variant20-variant22-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,37:76:99:1225,0,1241:17,22,14,23
chr1	23686246	.	C	T	1413.87	PASS	AC=2;AF=0.86;AN=2;DP=2163;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1366,122,0:0,0,23,18
chr1	23688178	.	A	G	469.38	PASS	AC=2;AF=0.872;AN=2;DP=1593;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1018,93,0:0,0,13,18
chr1	23688933	.	A	G	6123.78	PASS	AC=2;AF=0.75;AN=2;DP=8301;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,210:210:99:6425,630,0:0,0,112,98
chr1	23693422	.	T	C	3436.51	PASS	AC=2;AF=0.744;AN=2;DP=3432;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2496,234,0:0,0,50,28
chr1	23696152	.	G	A	1910.81	PASS	AC=2;AF=0.86;AN=2;DP=3368;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2812,258,0:0,0,30,56
chr1	23707692	.	A	G	845.93	PASS	AC=2;AF=0.872;AN=2;DP=909;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:605,63,0:0,0,12,9
chr1	23710805	.	A	G	2808.84	PASS	AC=2;AF=0.86;AN=2;DP=4647;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3248,323,0:0,0,63,45
chr1	23713952	.	T	G	3230.05	PASS	AC=2;AF=0.86;AN=2;DP=5710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3779,336,0:0,0,46,66
chr1	23720260	.	T	G	874.87	PASS	AC=2;AF=0.875;AN=2;DP=1271;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1545,108,0:0,0,33,3
chr1	23735241	.	G	T	1693.89	PASS	AC=2;AF=0.837;AN=2;DP=3760;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2628,252,0:0,0,43,41
chr1	23743581	.	C	G	1449.24	PASS	AC=2;AF=0.738;AN=2;DP=2089;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2073,195,0:0,0,43,22
chr1	23755513	.	T	C	2326.93	PASS	AC=2;AF=0.841;AN=2;DP=3690;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2168,198,0:0,0,29,37
chr1	23755716	.	T	C	1468.01	PASS	AC=2;AF=0.841;AN=2;DP=2175;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1990,183,0:0,0,35,26
chr1	23756155	.	T	C	958.14	PASS	AC=2;AF=0.841;AN=2;DP=2165;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1673,159,0:0,0,28,25
chr1	23756695	.	A	G	905.77	PASS	AC=2;AF=0.791;AN=2;DP=841;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:275,24,0:0,0,2,6
chr1	23758134	.	A	G	2505.25	PASS	AC=2;AF=0.841;AN=2;DP=3842;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2156,204,0:0,0,29,39
chr1	23758498	.	T	TA	711.22	PASS	AC=1;AF=0.533;AN=2;DP=409;MQ=60;set=variant4-variant5-variant6-variant7-variant23-variant24-filterInvariant29-filterInvariant31-variant34-variant35-filterInvariant37-filterInvariant39-filterInvariant40-variant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:14:85,0,14:1,1,0,7
chr1	23762679	.	A	G	292.45	PASS	AC=2;AF=0.738;AN=2;DP=855;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:751,63,0:0,0,6,15
chr1	23765472	.	A	G	1280.56	PASS	AC=2;AF=0.841;AN=2;DP=2030;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1478,120,0:0,0,12,28
chr1	23769359	.	T	C	733.04	PASS	AC=2;AF=0.784;AN=2;DP=1354;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:774,63,0:0,0,5,16
chr1	23857742	.	CT	CTT,C	75.53	PASS	AC=0,1;AF=0.048,0.452;AN=2;DP=841;MQ=60;set=variant-filterInvariant2-variant6-variant8-variant10-variant11-filterInvariant12-variant14-variant17-variant20-filterInvariant21-variant22-filterInvariant25-variant27-filterInvariant28-variant30-variant33-variant35-variant36-variant39-variant41	GT:DP:GQ:SB	0/2:34:99:8,14,5,7
chr1	23884661	.	G	A	3845.45	PASS	AC=2;AF=0.821;AN=2;DP=5801;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5672,556,0:0,0,79,107
chr1	23884780	.	T	C	800.26	PASS	AC=2;AF=0.559;AN=2;DP=1873;MQ=60;set=variant-variant7-variant8-variant9-variant10-variant12-variant13-variant21-variant24-variant25-variant28-variant32-variant33-variant34-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4097,398,0:0,0,63,70
chr1	23885230	.	C	G	401.03	PASS	AC=2;AF=0.617;AN=2;DP=891;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:778,72,0:0,0,16,8
chr1	23885498	.	T	C	2838.85	PASS	AC=2;AF=0.929;AN=2;DP=6591;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4798,455,0:0,0,85,67
chr1	23885599	.	T	C	1359.3	PASS	AC=2;AF=0.621;AN=2;DP=4971;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5575,533,0:0,0,93,85
chr1	23886151	.	C	T	685.49	PASS	AC=1;AF=0.5;AN=2;DP=306;MQ=60;set=variant7-variant24-variant25-variant32-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,12:40:99:326,0,799:11,17,7,5
chr1	23886338	.	G	GC	36.44	PASS	AC=1;AF=0.908;AN=2;DP=319;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:216,0,107:1,3,1,6
chr1	23908221	.	CTTTTTTT	CTTTTTTTTT,CTTTTTT,CTTTTTTTTTT,CTTTT,CTT,C,CTTTTTTTT,CTTTTT	113.27	PASS	AC=2,0,0,0,0,0,0,0;AF=0.19,0.214,0.024,0.048,0.024,0.024,0.095,0.071;AN=2;DP=509;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant18-variant19-variant22-variant23-variant24-variant25-filterInvariant27-variant28-variant36-variant41-variant44	GT:DP:GQ:SB	1/1:4:11:0,0,1,3
chr1	23954126	.	T	TAC,TACAC	822.98	PASS	AC=1,0;AF=0.622,0.041;AN=2;DP=2361;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:54:99:14,17,12,11
chr1	23967159	.	G	A	3101.88	PASS	AC=1;AF=0.694;AN=2;DP=7779;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:89,90:179:99:2112,0,2051:40,49,39,51
chr1	24018277	.	C	G	1292.27	PASS	AC=2;AF=1;AN=2;DP=4094;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2593,272,0:0,0,47,44
chr1	24021843	.	C	A	914.45	PASS	AC=2;AF=1;AN=2;DP=1578;FS=0;MQ=60;MQRankSum=-0.247;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:844,87,0:0,0,12,17
chr1	24022437	.	A	G	1645.19	PASS	AC=1;AF=0.692;AN=2;DP=4402;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:79,89:168:99:2211,0,1751:39,40,46,43
chr1	24069637	.	G	C	211.61	PASS	AC=1;AF=0.676;AN=2;DP=1037;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,7:39:76:76,0,907:15,17,4,3
chr1	24083494	.	C	T	187.39	PASS	AC=1;AF=0.558;AN=2;DP=612;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant18-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:337,0,387:10,3,8,2
chr1	24088128	.	G	A	1076.93	PASS	AC=1;AF=0.536;AN=2;DP=1016;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant9-variant16-variant23-variant28-variant30-variant33-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,45:89:99:1303,0,1167:12,32,17,28
chr1	24106510	.	A	AT	1140.85	PASS	AC=2;AF=0.932;AN=2;DP=1536;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1190,113,0:0,0,9,27
chr1	24113059	.	G	A	316.86	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.342;QD=18.64;ReadPosRankSum=0.146;SOR=1.112;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:345,0,227:1,6,1,9
chr1	24114129	.	G	A	421.61	PASS	AC=1;AF=0.681;AN=2;DP=2466;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,26:60:99:647,0,970:11,23,10,16
chr1	24117835	.	G	A	236.7	PASS	AC=2;AF=1;AN=2;DP=75;FS=0;MQ=60;MQRankSum=0.747;ReadPosRankSum=0.747;set=variant2-variant3-variant4-variant11-variant16-variant17-variant21-variant24-variant25-variant27-variant29-variant33-variant34-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:117,12,0:0,0,2,2
chr1	24124801	.	CT	C,CTT	45.35	PASS	AC=1,0;AF=0.455,0.045;AN=2;DP=298;set=filterInvariant3-filterInvariant4-filterInvariant8-filterInvariant18-variant21-filterInvariant24-filterInvariant29-filterInvariant30-filterInvariant33-filterInvariant41-variant44	GT:DP:GQ:SB	0/1:9:77:1,4,1,3
chr1	24128467	.	C	T	1490.3	PASS	AC=2;AF=0.932;AN=2;DP=2589;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2063,194,0:0,0,44,21
chr1	24129126	.	A	G	1504.08	PASS	AC=1;AF=0.586;AN=2;DP=4321;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,57:143:99:1300,0,2220:35,51,25,32
chr1	24133612	.	G	A	847.83	PASS	AC=1;AF=0.697;AN=2;DP=3450;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,53:99:99:1481,0,1169:23,23,33,20
chr1	24134462	.	C	T	274.58	PASS	AC=2;AF=0.942;AN=2;DP=549;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:467,36,0:0,0,10,2
chr1	24134721	.	T	C	4199.35	PASS	AC=2;AF=0.932;AN=2;DP=5979;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3447,318,0:0,0,54,52
chr1	24143932	.	A	G	1183.69	PASS	AC=2;AF=0.932;AN=2;DP=2179;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1318,126,0:0,0,24,18
chr1	24151996	.	C	A	502.23	PASS	AC=1;AF=0.661;AN=2;DP=1091;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:588,0,588:3,18,0,17
chr1	24171543	.	C	G	1055.42	PASS	AC=1;AF=0.645;AN=2;DP=1304;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:643,0,692:18,3,16,4
chr1	24172765	.	C	CT	446.27	PASS	AC=1;AF=0.565;AN=2;DP=651;set=variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-filterInvariant16-variant19-filterInvariant20-variant22-filterInvariant24-variant25-variant26-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:141,0,164:1,8,3,5
chr1	24180962	.	T	C	1899.89	PASS	AC=1;AF=0.586;AN=2;DP=3635;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,48:108:99:1154,0,1461:30,30,25,23
chr1	24192200	.	A	G	745.79	PASS	AC=1;AF=0.645;AN=2;DP=2226;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:1117,0,854:16,19,16,21
chr1	24196957	.	C	G	1441.02	PASS	AC=1;AF=0.7;AN=2;DP=3140;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,41:96:99:1029,0,1583:40,15,27,14
chr1	24197408	.	T	C	732.76	PASS	AC=2;AF=1;AN=2;DP=689;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:666,57,0:0,0,4,15
chr1	24197644	.	CAAAA	CAAA,CA,CAA,C	439.71	PASS	AC=0,0,1,0;AF=0.258,0.177,0.097,0.048;AN=2;DP=1762;set=variant2-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:31:99:3,8,18,2
chr1	24197696	.	A	G	2688.7	PASS	AC=1;AF=0.7;AN=2;DP=5202;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,73:152:99:1787,0,2217:51,28,43,30
chr1	24197898	.	C	G	3717.73	PASS	AC=1;AF=0.7;AN=2;DP=9726;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,89:207:99:2159,0,3385:44,74,39,50
chr1	24198804	.	T	C	1222.79	PASS	AC=1;AF=0.7;AN=2;DP=2760;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,39:69:99:996,0,656:19,11,24,15
chr1	24198840	.	C	G	2177.87	PASS	AC=1;AF=0.7;AN=2;DP=4360;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,54:94:99:1487,0,899:23,17,33,21
chr1	24199026	.	A	C	5231.98	PASS	AC=1;AF=0.7;AN=2;DP=7730;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,87:175:99:3220,0,4647:44,44,44,43
chr1	24199041	.	T	C	4860.41	PASS	AC=1;AF=0.7;AN=2;DP=7500;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,85:170:99:3259,0,4578:40,45,45,40
chr1	24199182	.	T	C	4225.3	PASS	AC=1;AF=0.7;AN=2;DP=9327;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,126:214:99:3270,0,2258:50,38,66,60
chr1	24199290	.	T	C	2802.7	PASS	AC=1;AF=0.7;AN=2;DP=7292;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,82:190:99:2202,0,2615:50,58,32,50
chr1	24199339	.	A	C	2137.62	PASS	AC=1;AF=0.7;AN=2;DP=5578;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,55:144:99:1452,0,2225:37,52,22,33
chr1	24199363	.	T	C	2300.43	PASS	AC=1;AF=0.7;AN=2;DP=4746;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,50:132:99:1842,0,3929:32,50,18,32
chr1	24199364	.	G	A	2300.43	PASS	AC=1;AF=0.7;AN=2;DP=4703;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,50:132:99:1842,0,3929:32,50,18,32
chr1	24199642	.	G	A	1797.37	PASS	AC=1;AF=0.7;AN=2;DP=5536;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,72:160:99:1522,0,2146:39,49,31,41
chr1	24199738	.	A	AT	577.63	PASS	AC=1;AF=0.7;AN=2;DP=1363;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:335,0,584:1,8,1,9
chr1	24199750	.	C	CAG	581.19	PASS	AC=1;AF=0.7;AN=2;DP=924;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:294,0,590:0,8,0,7
chr1	24200052	.	A	G	157.32	PASS	AC=1;AF=0.706;AN=2;DP=580;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:280,0,266:6,4,8,6
chr1	24200158	.	T	C	364.75	PASS	AC=1;AF=0.706;AN=2;DP=836;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:98:98,0,331:4,7,3,3
chr1	24200524	.	C	T	890.54	PASS	AC=1;AF=0.7;AN=2;DP=2206;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,44:72:99:1334,0,811:19,9,29,15
chr1	24200606	.	A	G	1366.51	PASS	AC=1;AF=0.7;AN=2;DP=3755;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,70:139:99:1849,0,1741:44,25,41,29
chr1	24200772	.	C	G	680.76	PASS	AC=1;AF=0.7;AN=2;DP=3848;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,58:120:99:1453,0,1708:24,38,22,36
chr1	24200800	.	T	C	542.26	PASS	AC=1;AF=0.7;AN=2;DP=3123;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,42:95:99:1157,0,1544:22,31,16,26
chr1	24200903	.	G	C	1005.21	PASS	AC=1;AF=0.706;AN=2;DP=2065;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:1158,0,1515:20,17,17,15
chr1	24200921	.	T	C	942.56	PASS	AC=1;AF=0.7;AN=2;DP=2262;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,30:64:99:1139,0,1498:21,13,19,11
chr1	24200969	.	T	C	1247.54	PASS	AC=1;AF=0.7;AN=2;DP=3120;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,58:115:99:2190,0,2389:31,26,35,23
chr1	24200983	.	C	T	1268.8	PASS	AC=1;AF=0.7;AN=2;DP=3353;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,62:120:99:2310,0,2408:32,26,33,29
chr1	24201094	.	G	C	1741.11	PASS	AC=1;AF=0.7;AN=2;DP=4698;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,73:151:99:2658,0,4600:45,33,37,36
chr1	24201109	.	C	T	1618.9	PASS	AC=1;AF=0.7;AN=2;DP=4786;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,68:138:99:2514,0,4440:42,28,32,36
chr1	24201262	.	A	G	487.54	PASS	AC=1;AF=0.7;AN=2;DP=6177;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,82:177:99:1992,0,2580:44,51,39,43
chr1	24201357	.	A	G	398.49	PASS	AC=1;AF=0.7;AN=2;DP=4028;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,48:122:99:1327,0,2121:30,44,24,24
chr1	24201448	.	C	T	660.11	PASS	AC=1;AF=0.7;AN=2;DP=3587;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,60:120:99:1525,0,1721:24,36,31,29
chr1	24201643	.	G	A	549.69	PASS	AC=1;AF=0.7;AN=2;DP=2817;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,44:73:99:1143,0,830:15,14,22,22
chr1	24201919	.	T	C	1695.89	PASS	AC=1;AF=0.7;AN=2;DP=5804;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,71:157:99:2719,0,4763:45,41,36,35
chr1	24201920	.	T	C	1695.89	PASS	AC=1;AF=0.7;AN=2;DP=5790;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,71:155:99:2719,0,4763:43,41,35,36
chr1	24202318	.	A	G	79.71	PASS	AC=1;AF=0.726;AN=2;DP=298;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:177,0,153:2,4,0,5
chr1	24239719	.	C	G	525.13	PASS	AC=2;AF=1;AN=2;DP=753;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0;ReadPosRankSum=0.29;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:634,57,0:0,0,11,8
chr1	24286300	.	C	T	491.27	PASS	AC=2;AF=0.989;AN=2;DP=669;FractionInformativeReads=1;MQRankSum=-0.113;ReadPosRankSum=-0.453;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:560,39,0:0,0,13,0
chr1	24287227	.	C	T	160.68	PASS	AC=2;AF=1;AN=2;DP=330;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:309,21,0:0,0,6,1
chr1	24287261	.	T	C	172.34	PASS	AC=1;AF=0.5;AN=2;DP=73;FractionInformativeReads=1;MQ=60;set=variant5-variant18-variant26-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:271,0,207:6,5,7,3
chr1	24287780	.	GCTT	G	424.79	PASS	AC=1;AF=0.662;AN=2;DP=421;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:390,0,306:3,5,5,5
chr1	24287812	.	G	C	135.21	PASS	AC=1;AF=0.5;AN=2;DP=51;FractionInformativeReads=1;MQ=60;set=variant5-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:139,0,318:6,2,4,2
chr1	24287877	.	T	C	129.32	PASS	AC=1;AF=0.5;AN=2;DP=96;FractionInformativeReads=1;MQ=60;set=variant5-variant26-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:349,0,285:7,2,9,4
chr1	24288184	.	A	C	495.18	PASS	AC=1;AF=0.5;AN=2;DP=200;FractionInformativeReads=1;set=variant5-variant26-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,39:56:99:1040,0,450:9,8,16,23
chr1	24288404	.	A	G	40.5	PASS	AC=1;AF=0.703;AN=2;DP=218;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:151,0,104:1,3,1,4
chr1	24289891	.	ATGAATG	A	1225.53	PASS	AC=1;AF=0.639;AN=2;DP=3304;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,34:102:99:1223,0,4129:32,36,16,18
chr1	24291597	.	G	C	5111.05	PASS	AC=2;AF=0.989;AN=2;DP=6710;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:5206,470,0:0,0,77,80
chr1	24291887	.	A	G	2826.59	PASS	AC=1;AF=0.5;AN=2;DP=890;MQ=60;set=variant5-variant26-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:108,111:219:99:3088,0,2930:54,54,57,54
chr1	24292140	.	G	A	11913.1	PASS	AC=2;AF=0.989;AN=2;DP=14896;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,313:313:99:9674,938,0:0,0,157,156
chr1	24292615	.	T	G	3656.15	PASS	AC=1;AF=0.5;AN=2;DP=1171;MQ=60;set=variant5-variant26-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:148,134:282:99:3220,0,3814:67,81,71,63
chr1	24292830	.	A	G	2250.91	PASS	AC=2;AF=0.989;AN=2;DP=3331;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,81:82:99:2574,213,0:1,0,27,54
chr1	24292854	.	T	C	683.43	PASS	AC=1;AF=0.681;AN=2;DP=2277;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,21:52:99:604,0,922:9,22,4,17
chr1	24293612	.	G	A	392.28	PASS	AC=1;AF=0.5;AN=2;DP=135;FractionInformativeReads=1;MQ=60;set=variant5-variant18-variant26-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:396,0,584:0,15,0,11
chr1	24294249	.	C	T	3760.37	PASS	AC=2;AF=0.989;AN=2;DP=5335;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3400,320,0:0,0,65,42
chr1	24294362	.	A	T	1547.22	PASS	AC=1;AF=0.639;AN=2;DP=3912;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,74:133:99:1858,0,1535:29,30,33,41
chr1	24294450	.	CAA	CA,CAAA,C	646.13	PASS	AC=1,0,0;AF=0.489,0.159,0.057;AN=2;DP=3360;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:73:99:10,14,19,30
chr1	24294627	.	C	T	253.62	PASS	AC=1;AF=0.681;AN=2;DP=896;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:275,0,521:5,12,2,8
chr1	24296708	.	A	G	713.96	PASS	AC=1;AF=0.5;AN=2;DP=508;MQ=60;set=variant4-variant5-variant18-variant26-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,25:68:99:526,0,1186:22,21,12,13
chr1	24296853	.	G	GTTT,GTTTT,GT,GTT,GTTTTT,GTTTTTT	85.54	PASS	AC=0,1,0,0,0,0;AF=0.105,0.197,0.289,0.118,0.079,0.013;AN=2;DP=703;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:12:38:0,2,3,7
chr1	24298263	.	T	C	499.34	PASS	AC=1;AF=0.681;AN=2;DP=940;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,14:19:99:443,0,126:4,1,11,3
chr1	24301685	.	C	A	356.17	PASS	AC=1;AF=0.639;AN=2;DP=1176;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:600,0,551:4,14,7,17
chr1	24301721	.	T	C	287.99	PASS	AC=2;AF=0.989;AN=2;DP=759;FS=0;MQ=60;MQRankSum=0.362;ReadPosRankSum=1.359;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1087,81,0:0,0,3,24
chr1	24306621	.	G	T	338.23	PASS	AC=1;AF=0.5;AN=2;DP=197;MQ=60;set=variant5-variant26-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,30:53:99:749,0,553:13,10,19,11
chr1	24382484	.	C	A	607.64	PASS	AC=2;AF=0.786;AN=2;DP=3296;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2574,257,0:0,0,54,32
chr1	24383819	.	T	C	847.5	PASS	AC=2;AF=0.786;AN=2;DP=4113;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:4175,363,0:0,0,45,76
chr1	24387822	.	T	A	627.17	PASS	AC=1;AF=0.579;AN=2;DP=1219;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant11-variant12-variant15-variant17-variant20-variant25-variant26-variant27-variant29-variant32-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,35:71:99:805,0,833:15,21,18,17
chr1	24388371	.	T	C	3011.56	PASS	AC=2;AF=0.932;AN=2;DP=3846;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2507,230,0:0,0,53,24
chr1	24388417	.	A	G	822.28	PASS	AC=1;AF=0.571;AN=2;DP=1881;MQ=60;set=variant2-variant4-variant5-variant8-variant11-variant12-variant15-variant20-variant25-variant26-variant29-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,48:129:99:1108,0,2036:49,32,29,19
chr1	24388679	.	T	C	625.58	PASS	AC=1;AF=0.563;AN=2;DP=1161;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant8-variant11-variant12-variant15-variant17-variant20-variant25-variant26-variant29-variant32-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,31:61:99:881,0,869:15,15,13,18
chr1	24389509	.	GAA	G	240.28	PASS	AC=2;AF=0.726;AN=2;DP=836;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:765,51,0:0,0,15,2
chr1	24390731	.	C	T	684.97	PASS	AC=1;AF=0.581;AN=2;DP=1761;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:837,0,826:16,19,15,21
chr1	24392600	.	G	A	1286.17	PASS	AC=1;AF=0.542;AN=2;DP=1266;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,44:104:99:1178,0,1630:26,34,21,23
chr1	24392671	.	T	C	1082.03	PASS	AC=1;AF=0.542;AN=2;DP=1256;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1096,0,1466:26,28,23,24
chr1	24392796	.	C	T	650.22	PASS	AC=1;AF=0.5;AN=2;DP=647;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,26:61:99:767,0,909:14,21,10,16
chr1	24393563	.	C	T	1472.61	PASS	AC=1;AF=0.542;AN=2;DP=1660;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,66:141:99:1539,0,1867:39,36,33,33
chr1	24393656	.	G	A	727.22	PASS	AC=1;AF=0.581;AN=2;DP=3419;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,59:109:99:1477,0,1250:21,29,24,35
chr1	24393729	.	G	A	427.26	PASS	AC=2;AF=0.645;AN=2;DP=1554;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1357,117,0:0,0,11,28
chr1	24393773	.	C	CCTTT	154.5	PASS	AC=1;AF=0.65;AN=2;DP=169;set=variant-variant6-variant14-variant27-variant28-variant30-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,9:10:7:334,0,7:0,1,1,8
chr1	24394424	.	G	A	2482.76	PASS	AC=1;AF=0.542;AN=2;DP=2921;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:153,135:288:99:3187,0,3949:91,62,79,56
chr1	24394673	.	C	T	288.39	PASS	AC=1;AF=0.545;AN=2;DP=300;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:284,0,494:9,7,5,5
chr1	24394811	.	A	G	685.16	PASS	AC=1;AF=0.5;AN=2;DP=1002;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,48:106:99:1131,0,1235:30,28,25,23
chr1	24395003	.	T	G	398.5	PASS	AC=2;AF=0.667;AN=2;DP=367;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:595,51,0:0,0,6,11
chr1	24400584	.	G	C	4777.94	PASS	AC=2;AF=1;AN=2;DP=6643;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4548,441,0:0,0,83,64
chr1	24400633	.	C	G	6102.71	PASS	AC=2;AF=1;AN=2;DP=8369;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:4931,497,0:0,0,82,84
chr1	24406647	.	G	A	1594.7	PASS	AC=1;AF=0.591;AN=2;DP=6402;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,82:174:99:2064,0,2197:44,48,35,47
chr1	24408015	.	C	G	927.76	PASS	AC=1;AF=0.591;AN=2;DP=2535;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,27:67:99:677,0,1065:19,21,14,13
chr1	24408765	.	T	C	198.06	PASS	AC=1;AF=0.591;AN=2;DP=803;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:284,0,456:5,10,3,8
chr1	24409165	.	C	T	1027.51	PASS	AC=1;AF=0.5;AN=2;DP=1162;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant11-variant12-variant15-variant17-variant25-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:65,45:110:99:1042,0,1646:34,31,23,22
chr1	24409191	.	C	T	1194.45	PASS	AC=1;AF=0.581;AN=2;DP=4172;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,65:125:99:1526,0,1581:33,27,31,34
chr1	24410751	.	T	C	418.74	PASS	AC=1;AF=0.591;AN=2;DP=1182;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:571,0,277:8,7,10,9
chr1	24413159	.	T	C	1221.83	PASS	AC=1;AF=0.591;AN=2;DP=4408;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,50:115:99:1301,0,1594:36,29,31,19
chr1	24413427	.	T	G	227.51	PASS	AC=1;AF=0.576;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:402,0,450:6,11,0,11
chr1	24416059	.	T	C	2719.91	PASS	AC=2;AF=1;AN=2;DP=3838;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2317,222,0:0,0,45,29
chr1	24416070	.	G	C	701.16	PASS	AC=2;AF=0.622;AN=2;DP=3625;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2572,265,0:0,0,49,40
chr1	24417415	.	T	C	6385.9	PASS	AC=1;AF=0.529;AN=2;DP=4176;MQ=60;set=variant2-variant10-variant12-variant15-variant17-variant20-variant21-variant25-variant27-variant29-variant30-variant33-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:133,118:251:99:2823,0,3110:61,72,54,64
chr1	24418768	.	T	C	905.93	PASS	AC=1;AF=0.661;AN=2;DP=3066;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant11-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,34:88:99:843,0,1274:20,34,12,22
chr1	24419490	.	C	T	3507.4	PASS	AC=1;AF=0.5;AN=2;DP=182;FS=1.168;FractionInformativeReads=1;MQ=60;MQRankSum=1.733;QD=19.27;ReadPosRankSum=1.157;SOR=0.57;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:91,91:182:99:3536,0,4834:54,37,51,40
chr1	24419496	.	A	G	1503.9	PASS	AC=1;AF=0.682;AN=2;DP=6169;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,98:197:99:3674,0,4970:58,41,54,44
chr1	24421334	.	G	T	775.5	PASS	AC=1;AF=0.597;AN=2;DP=2504;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,49:84:99:1284,0,909:24,11,26,23
chr1	24421474	.	G	A	1108.67	PASS	AC=1;AF=0.656;AN=2;DP=4499;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,70:133:99:1866,0,1642:31,32,33,37
chr1	24421643	.	T	C	68.12	PASS	AC=1;AF=0.667;AN=2;DP=542;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:282,0,472:3,12,2,8
chr1	24421875	.	C	T	282.7	PASS	AC=1;AF=0.597;AN=2;DP=1190;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:485,0,424:12,4,10,7
chr1	24421950	.	C	G	966.47	PASS	AC=1;AF=0.682;AN=2;DP=3376;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,46:93:99:1243,0,1199:25,22,29,17
chr1	24434595	.	T	C	1324.17	PASS	AC=2;AF=0.694;AN=2;DP=6127;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5463,518,0:0,0,71,102
chr1	24447116	.	C	T	1226.77	PASS	AC=2;AF=0.63;AN=2;DP=2647;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant31-variant32-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2296,210,0:0,0,33,37
chr1	24447214	.	G	A	890.6	PASS	AC=2;AF=0.765;AN=2;DP=2890;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2047,203,0:0,0,39,29
chr1	24447468	.	G	C	1721.12	PASS	AC=2;AF=0.63;AN=2;DP=3432;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant31-variant32-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4238,386,0:0,0,65,64
chr1	24454688	.	C	T	1469.7	PASS	AC=2;AF=0.571;AN=2;DP=1644;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant12-variant17-variant18-variant26-variant28-variant31-variant32-variant33-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2811,273,0:0,0,54,37
chr1	24460797	.	T	G	2986.92	PASS	AC=2;AF=0.73;AN=2;DP=4244;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3524,330,0:0,0,52,58
chr1	24463563	.	C	T	366.35	PASS	AC=2;AF=0.533;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant12-variant16-variant17-variant18-variant23-variant26-variant31-variant32-variant33-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1368,114,0:0,0,33,5
chr1	24463854	.	C	T	1223.06	PASS	AC=1;AF=0.542;AN=2;DP=1255;MQ=60;set=variant8-variant12-variant17-variant18-variant26-variant28-variant31-variant32-variant33-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,61:116:99:1788,0,1305:24,31,21,40
chr1	24480612	.	CA	C	667.84	PASS	AC=1;AF=0.909;AN=2;DP=1066;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:317,0,260:11,1,8,6
chr1	24480864	.	G	A	6907.81	PASS	AC=1;AF=0.731;AN=2;DP=8215;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,85:173:99:1989,0,2313:44,44,46,39
chr1	24480905	.	C	T	6189.69	PASS	AC=1;AF=0.725;AN=2;DP=7348;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,88:161:99:2157,0,2026:37,36,46,42
chr1	24481349	.	T	C	106.77	PASS	AC=1;AF=0.815;AN=2;DP=145;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:156,0,540:3,1,2,2
chr1	24481351	.	T	C	141.01	PASS	AC=1;AF=0.804;AN=2;DP=152;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:156,0,540:3,1,2,2
chr1	24481376	.	A	C	96.01	PASS	AC=1;AF=0.781;AN=2;DP=228;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:156,0,540:3,1,2,2
chr1	24481390	.	C	T	105.52	PASS	AC=1;AF=0.779;AN=2;DP=288;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:195,0,537:3,1,3,2
chr1	24481706	.	ATG	A	2085.19	PASS	AC=1;AF=0.909;AN=2;DP=3531;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,42:78:99:1382,0,1144:22,14,24,18
chr1	24481828	.	G	A	1808.17	PASS	AC=1;AF=0.725;AN=2;DP=3238;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,35:87:99:824,0,1331:23,29,16,19
chr1	24481940	.	G	A	1132.14	PASS	AC=1;AF=0.817;AN=2;DP=2115;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,20:54:99:490,0,992:15,19,10,10
chr1	24482059	.	C	T	886.95	PASS	AC=1;AF=0.725;AN=2;DP=1487;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:520,0,635:13,13,10,11
chr1	24482490	.	A	T	823.65	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=0;FractionInformativeReads=0.987;MQ=60;MQRankSum=-1.468;QD=10.84;ReadPosRankSum=0.228;SOR=0.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,37:75:99:852,0,930:20,18,19,18
chr1	24482748	.	T	G	1935.99	PASS	AC=2;AF=1;AN=2;DP=3147;FS=0;MQ=60;MQRankSum=-0.279;ReadPosRankSum=0.335;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2078,192,0:0,0,33,31
chr1	24482992	.	C	G	1393.01	PASS	AC=2;AF=0.881;AN=2;DP=2741;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2218,225,0:0,0,38,37
chr1	24483455	.	G	A	1719.73	PASS	AC=2;AF=1;AN=2;DP=2686;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1819,168,0:0,0,32,24
chr1	24483491	.	A	G	1452.54	PASS	AC=2;AF=1;AN=2;DP=2705;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1890,165,0:0,0,33,22
chr1	24484108	.	G	A	489.21	PASS	AC=1;AF=0.5;AN=2;DP=429;MQ=60;set=variant8-variant17-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,45:86:99:1151,0,1114:22,19,24,21
chr1	24484441	.	A	G	2048.28	PASS	AC=2;AF=1;AN=2;DP=3484;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2309,204,0:0,0,31,37
chr1	24485518	.	T	C	1309.03	PASS	AC=2;AF=1;AN=2;DP=2561;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2412,228,0:0,0,44,32
chr1	24485813	.	T	C	1071.74	PASS	AC=2;AF=1;AN=2;DP=1731;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.139;ReadPosRankSum=0.346;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1199,90,0:0,0,14,16
chr1	24485941	.	T	C	2916.41	PASS	AC=1;AF=0.829;AN=2;DP=4107;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,55:84:99:1276,0,672:17,12,29,26
chr1	24486216	.	GT	G,GTTTTTTTTTTTTTGTTTT,GTTTTGTTTTTTTTGTTTT,GTTTT	162.83	PASS	AC=1,0,0,0;AF=0.716,0.011,0.102,0.011;AN=2;DP=1234;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:22:99:1,7,3,11
chr1	24487760	.	T	C	1137.31	PASS	AC=2;AF=1;AN=2;DP=1459;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:894,84,0:0,0,19,9
chr1	24495722	.	G	A	193.42	PASS	AC=1;AF=0.689;AN=2;DP=484;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:202,0,106:3,0,4,2
chr1	24495839	.	T	C	904.2	PASS	AC=1;AF=0.5;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant24-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:576,0,926:23,11,14,11
chr1	24496085	.	G	A	1805.73	PASS	AC=1;AF=0.5;AN=2;DP=1135;MQ=60;set=variant21-variant24-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:98,103:201:99:2650,0,2498:40,58,42,61
chr1	24507172	.	A	C	51.82	PASS	AC=1;AF=0.5;AN=2;DP=221;MQ=60;set=filterInvariant16-variant23-filterInvariant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,8:44:99:121,0,2465:9,27,8,0
chr1	24507176	.	A	C	45.7	PASS	AC=1;AF=0.5;AN=2;DP=277;MQ=60;set=filterInvariant15-filterInvariant16-variant23-variant31-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,7:45:93:93,0,2559:11,27,7,0
chr1	24507182	.	T	C	187.94	PASS	AC=1;AF=0.5;AN=2;DP=142;MQ=60;set=variant23-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,7:49:84:84,0,2637:13,29,7,0
chr1	24513608	.	C	T	163.63	PASS	AC=1;AF=0.667;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant23-variant28-variant30-variant32-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:304,0,125:4,3,6,7
chr1	24513768	.	G	A	824.25	PASS	AC=2;AF=0.94;AN=2;DP=1616;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:90:777,90,0:0,0,15,16
chr1	24645737	.	A	C	377.19	PASS	AC=1;AF=0.5;AN=2;DP=900;MQ=60;set=variant-variant2-variant4-filterInvariant7-variant10-variant12-variant13-variant14-variant17-variant20-variant22-variant23-variant24-filterInvariant25-filterInvariant27-variant29-variant31-filterInvariant32-variant33-filterInvariant34-filterInvariant35-variant37-filterInvariant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:318,0,400:6,24,23,1
chr1	24645743	.	T	C	207.6	PASS	AC=1;AF=0.5;AN=2;DP=1004;MQ=60;set=variant-variant5-variant10-variant11-filterInvariant12-variant14-variant16-filterInvariant17-filterInvariant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-filterInvariant31-variant33-variant35-variant37-variant38-variant40-filterInvariant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,10:49:78:78,0,1639:13,26,10,0
chr1	24645745	.	A	C	206.67	PASS	AC=1;AF=0.5;AN=2;DP=787;MQ=60;set=variant-variant5-filterInvariant12-variant14-variant16-variant17-filterInvariant20-filterInvariant24-filterInvariant25-variant27-variant29-filterInvariant31-variant33-variant34-filterInvariant35-variant37-filterInvariant38-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:40,9:49:83:83,0,1625:13,27,9,0
chr1	24668842	.	T	C	200.91	PASS	AC=1;AF=0.575;AN=2;DP=710;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant13-variant15-variant16-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant32-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:624,0,544:6,13,9,11
chr1	24673866	.	A	G	1105.41	PASS	AC=1;AF=0.708;AN=2;DP=3501;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,61:113:99:1607,0,1328:30,22,39,22
chr1	24680915	.	C	T	1539.79	PASS	AC=1;AF=0.571;AN=2;DP=2654;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,53:122:99:1345,0,1809:30,39,28,25
chr1	24683536	.	GC	G,GCCC,GCC	349.57	PASS	AC=1,0,0;AF=0.344,0.063,0.281;AN=2;DP=270;set=variant-variant2-variant4-variant6-variant13-variant14-variant16-variant18-variant22-variant23-variant27-variant29-variant30-variant32-variant41-variant44	GT:DP:GQ:SB	0/1:15:95:5,5,4,1
chr1	24683548	.	A	C	110.1	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=4.242;FractionInformativeReads=1;MQ=60;MQRankSum=0.784;QD=5.79;ReadPosRankSum=2.601;SOR=0.18;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:138,0,315:8,3,4,4
chr1	24687653	.	T	C	246.22	PASS	AC=2;AF=0.778;AN=2;DP=664;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:621,45,0:0,0,1,14
chr1	24690414	.	A	G	679.36	PASS	AC=2;AF=0.778;AN=2;DP=739;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:418,36,0:0,0,9,3
chr1	24690676	.	G	A	2054.26	PASS	AC=1;AF=0.5;AN=2;DP=632;FractionInformativeReads=1;MQ=60;set=variant5-variant32-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,102:178:99:2579,0,1920:45,31,55,47
chr1	24690764	.	T	A	1727.42	PASS	AC=1;AF=0.563;AN=2;DP=2633;MQ=60;set=variant-variant2-variant6-variant11-variant14-variant16-variant21-variant22-variant28-variant29-variant30-variant33-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,82:177:99:2038,0,2469:44,51,39,43
chr1	24695749	.	C	G	1359.97	PASS	AC=1;AF=0.58;AN=2;DP=4062;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant32-variant33-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:84,78:162:99:2064,0,2074:48,36,37,41
chr1	24706113	.	G	A	414.04	PASS	AC=1;AF=0.63;AN=2;DP=1094;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:462,0,628:10,14,11,5
chr1	24706269	.	A	G	933.35	PASS	AC=1;AF=0.63;AN=2;DP=2473;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,45:75:99:1167,0,651:16,14,23,22
chr1	24706292	.	T	C	970.3	PASS	AC=1;AF=0.615;AN=2;DP=2405;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,42:67:99:1134,0,592:11,14,20,22
chr1	24706410	.	T	C	507.24	PASS	AC=1;AF=0.63;AN=2;DP=968;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:456,0,352:1,10,4,12
chr1	24706438	.	A	AG	232.54	PASS	AC=1;AF=0.635;AN=2;DP=544;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:320,0,555:1,8,1,8
chr1	24706461	.	A	G	241.61	PASS	AC=1;AF=0.635;AN=2;DP=343;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:231,0,495:1,6,0,6
chr1	24718075	.	T	C	1789.37	PASS	AC=1;AF=0.609;AN=2;DP=3788;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:92,63:155:99:1517,0,3622:48,44,30,33
chr1	24718079	.	C	A	1589.04	PASS	AC=1;AF=0.577;AN=2;DP=1904;MQ=60;set=variant-variant2-variant5-variant14-variant16-variant21-variant22-variant29-variant30-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,91:154:99:2195,0,2390:30,33,46,45
chr1	24727678	.	C	T	1582	PASS	AC=2;AF=0.781;AN=2;DP=1466;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1592,153,0:0,0,30,21
chr1	24740225	.	A	T	448.44	PASS	AC=1;AF=0.577;AN=2;DP=982;MQ=60;set=variant-variant2-variant5-variant14-variant16-variant21-variant22-variant29-variant30-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,31:69:99:704,0,870:20,18,17,14
chr1	24745704	.	T	G	144.72	PASS	AC=1;AF=0.611;AN=2;DP=81;MQ=60;set=variant2-variant5-variant14-variant16-variant21-variant29-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:240,0,176:4,1,6,2
chr1	24746205	.	C	T	1627.34	PASS	AC=1;AF=0.604;AN=2;DP=4103;MQ=60;set=variant-variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:94,84:178:99:1911,0,2390:44,50,39,45
chr1	24759685	.	G	T	207.55	PASS	AC=1;AF=0.577;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant14-variant16-variant18-variant21-variant29-variant30-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:169,0,388:6,10,5,5
chr1	24768778	.	G	C	570.13	PASS	AC=2;AF=0.743;AN=2;DP=1166;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1471,126,0:0,0,12,30
chr1	24775967	.	G	A	1070.15	PASS	AC=1;AF=0.577;AN=2;DP=1381;MQ=60;set=variant-variant2-variant5-variant14-variant16-variant21-variant22-variant29-variant30-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,60:104:99:1409,0,991:22,22,33,27
chr1	24779855	.	T	C	835.83	PASS	AC=1;AF=0.614;AN=2;DP=851;MQ=60;set=variant-variant3-variant6-variant11-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,21:49:99:581,0,1101:20,8,14,7
chr1	24779873	.	C	T	136.16	PASS	AC=1;AF=0.553;AN=2;DP=975;MQ=60;set=variant-variant2-variant5-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant29-variant30-variant34-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,32:60:99:796,0,986:18,10,21,11
chr1	24780356	.	C	A	125.11	PASS	AC=1;AF=0.538;AN=2;DP=224;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant14-variant16-variant21-variant22-variant29-variant30-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:326,0,410:10,4,8,4
chr1	24780521	.	CTT	CTTT,CT,CTTTT,C	60.47	PASS	AC=0,1,0,0;AF=0.321,0.321,0.018,0.018;AN=2;DP=696;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant21-variant22-variant24-variant27-variant29-filterInvariant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:15:71:1,6,3,5
chr1	24781164	.	T	C	150.39	PASS	AC=1;AF=0.536;AN=2;DP=259;MQ=60;set=variant-variant2-variant5-variant14-variant16-variant21-variant22-variant29-variant30-variant34-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:470,0,289:7,4,9,7
chr1	24781247	.	T	C	1097.43	PASS	AC=2;AF=0.694;AN=2;DP=1353;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1527,144,0:0,0,21,27
chr1	24784139	.	A	G	1192.91	PASS	AC=1;AF=0.614;AN=2;DP=1316;MQ=60;set=variant-variant3-variant6-variant11-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:892,0,1105:27,8,23,6
chr1	24784197	.	T	C	4434.29	PASS	AC=2;AF=0.694;AN=2;DP=3708;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,129:130:99:3800,362,0:1,0,71,58
chr1	24785393	.	C	T	2559.76	PASS	AC=1;AF=0.614;AN=2;DP=3720;MQ=60;set=variant-variant3-variant6-variant11-variant13-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:113,62:175:99:1336,0,3017:54,59,28,34
chr1	24791686	.	A	AGTGCATGAGCTTTG	716.41	PASS	AC=1;AF=0.526;AN=2;DP=749;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant13-variant14-variant16-variant18-variant21-variant22-variant29-variant32-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:691,0,839:5,9,7,10
chr1	24791917	.	A	G	1626.77	PASS	AC=1;AF=0.553;AN=2;DP=1590;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant13-variant14-variant16-variant18-variant21-variant22-variant29-variant32-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,45:80:99:1104,0,824:18,17,27,18
chr1	24792617	.	T	A	9603.11	PASS	AC=2;AF=0.721;AN=2;DP=12137;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,326:326:99:9888,974,0:0,0,150,176
chr1	24796069	.	A	C	421.33	PASS	AC=1;AF=0.563;AN=2;DP=369;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant14-variant16-variant22-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:723,0,790:16,13,14,13
chr1	24798068	.	CAA	C,CAAA,CAAAAA,CAAAA	34.05	PASS	AC=0,0,2,0;AF=0.214,0.143,0.214,0.071;AN=2;DP=54;MQ=60;set=variant9-variant11-variant21-variant24-variant27-variant39-variant41	GT:DP:GQ:SB	3/3:4:12:0,0,4,0
chr1	24798383	.	C	T	600.12	PASS	AC=2;AF=0.717;AN=2;DP=838;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:85:778,85,0:0,0,15,14
chr1	24798498	.	CTTT	CT,CTT,C	482.42	PASS	AC=1,0,1;AF=0.525,0.125,0.013;AN=2;DP=1455;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/1:28:89:0,1,14,13
chr1	24840768	.	G	A	216.06	PASS	AC=1;AF=0.661;AN=2;DP=760;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:303,0,306:8,3,8,2
chr1	24859617	.	G	A	279.6	PASS	AC=1;AF=0.633;AN=2;DP=1027;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant21-variant23-variant29-variant32-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,26:58:99:715,0,927:24,8,19,7
chr1	24859665	.	G	A	789.81	PASS	AC=1;AF=0.625;AN=2;DP=1580;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant21-variant23-variant29-variant32-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,46:97:99:1157,0,1213:29,22,28,18
chr1	24861704	.	G	A	635.24	PASS	AC=1;AF=0.607;AN=2;DP=2452;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,39:71:99:995,0,832:15,17,18,21
chr1	24862643	.	T	G	6476.97	PASS	AC=1;AF=0.638;AN=2;DP=10648;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:184,170:354:99:6459,0,9447:95,89,89,81
chr1	24862649	.	A	G	6662.06	PASS	AC=1;AF=0.638;AN=2;DP=10801;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:185,172:357:99:6624,0,9435:95,90,87,85
chr1	24863285	.	C	T	976.11	PASS	AC=1;AF=0.533;AN=2;DP=1088;MQ=60;set=variant7-variant10-variant13-variant15-variant16-variant18-variant24-variant27-variant30-variant31-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,35:74:99:890,0,1056:23,16,19,16
chr1	24882805	.	A	G	91.67	PASS	AC=1;AF=0.583;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant21-variant28-variant31-variant33-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,8:10:38:266,0,38:0,2,5,3
chr1	24922129	.	G	A	291.54	PASS	AC=1;AF=0.607;AN=2;DP=879;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:395,0,544:4,14,3,10
chr1	24927561	.	T	C	2783.8	PASS	AC=1;AF=0.735;AN=2;DP=3925;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,64:131:99:1538,0,1614:31,36,27,37
chr1	24927625	.	C	A	1055.05	PASS	AC=1;AF=0.525;AN=2;DP=1686;MQ=60;set=variant-variant3-variant4-variant9-variant10-variant13-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant31-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,51:98:99:1244,0,1189:19,28,21,30
chr1	24932942	.	T	C	2431.66	PASS	AC=1;AF=0.729;AN=2;DP=2546;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,43:81:99:1069,0,945:22,16,20,23
chr1	24933441	.	C	T	166.72	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=3.522;FractionInformativeReads=1;MQ=60;MQRankSum=0.851;QD=16.67;ReadPosRankSum=0.47;SOR=3.056;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:195,0,115:2,3,0,5
chr1	24935444	.	G	C	293.96	PASS	AC=1;AF=0.524;AN=2;DP=590;MQ=60;set=variant-variant3-variant4-variant9-variant10-variant13-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant31-variant32-variant33-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:327,0,383:10,5,9,6
chr1	24969973	.	ACC	AC,CCC,ACCC,A	266.73	PASS	AC=1,0,0,0;AF=0.382,0.147,0.059,0.029;AN=2;DP=985;MQ=60;set=variant8-variant13-filterInvariant15-filterInvariant6-filterInvariant5-variant16-variant18-variant26-variant28-variant29-variant32-variant36-filterInvariant37-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:34:99:5,12,3,14
chr1	24989762	.	G	T	1344.11	PASS	AC=2;AF=0.977;AN=2;DP=2280;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1629,165,0:0,0,23,32
chr1	25098245	.	T	C	810.95	PASS	AC=2;AF=0.744;AN=2;DP=1534;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1571,126,0:0,0,35,7
chr1	25098341	.	C	T	2107.84	PASS	AC=2;AF=0.744;AN=2;DP=5614;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4618,445,0:0,0,88,61
chr1	25153692	.	G	A	3006.5	PASS	AC=2;AF=0.989;AN=2;DP=5343;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3250,330,0:0,0,47,63
chr1	25167854	.	A	G	901.08	PASS	AC=1;AF=0.5;AN=2;DP=126;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,36:63:99:875,0,698:16,11,20,16
chr1	25168124	.	G	C	2181.68	PASS	AC=2;AF=0.731;AN=2;DP=4256;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,130:132:99:4146,346,0:1,1,81,49
chr1	25169875	.	C	A	12039.8	PASS	AC=2;AF=0.977;AN=2;DP=15793;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,387:387:99:12466,1159,0:0,0,153,234
chr1	25254317	.	C	T	434.65	PASS	AC=2;AF=0.705;AN=2;DP=1141;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:939,90,0:0,0,9,21
chr1	25256444	.	G	A	1345.61	PASS	AC=2;AF=0.692;AN=2;DP=2778;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,59:60:99:1668,168,0:1,0,23,36
chr1	25291448	.	C	T	212.86	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.898;QD=21.29;ReadPosRankSum=0.898;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,8:10:17:241,0,17:1,1,5,3
chr1	25570081	.	T	C	952.02	PASS	AC=1;AF=0.579;AN=2;DP=1506;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant23-variant27-variant29-variant30-variant35-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,46:86:99:1108,0,904:22,18,23,23
chr1	25570550	.	A	AT	123.85	PASS	AC=2;AF=0.92;AN=2;DP=735;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:50:412,50,0:0,0,13,4
chr1	25611035	.	G	C	1660.85	PASS	AC=1;AF=0.938;AN=2;DP=6571;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,192:271:99:4614,0,1867:51,28,103,89
chr1	25634205	.	G	A	3176.61	PASS	AC=1;AF=0.786;AN=2;DP=493;FractionInformativeReads=1;set=variant-variant2-variant12-variant21-variant22-variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,47:81:99:1376,0,957:22,12,25,22
chr1	25648349	.	T	C	2732.1	PASS	AC=1;AF=0.75;AN=2;DP=451;FractionInformativeReads=1;set=variant-variant2-variant12-variant21-variant22-variant25-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,35:59:99:844,0,548:14,10,19,16
chr1	25678002	.	TA	T	83.48	PASS	AC=2;AF=0.942;AN=2;DP=734;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,16:17:24:376,24,0:1,0,16,0
chr1	25678238	.	T	A	2114.48	PASS	AC=2;AF=1;AN=2;DP=3192;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2010,194,0:0,0,25,40
chr1	25687901	.	T	C	2784.52	PASS	AC=1;AF=0.667;AN=2;DP=2265;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,42:74:99:1117,0,755:17,15,19,23
chr1	25688276	.	A	G	1399.64	PASS	AC=1;AF=0.706;AN=2;DP=1860;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:704,0,833:16,16,11,17
chr1	25717365	.	C	G	7984.7	PASS	AC=1;AF=0.556;AN=2;DP=2956;set=variant-variant2-variant12-variant21-variant22-variant25-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:159,166:325:99:4069,0,3913:69,90,73,93
chr1	25747230	.	G	C	605.72	PASS	AC=1;AF=0.732;AN=2;DP=1320;set=variant-filterInvariant2-variant5-variant6-variant7-variant8-variant12-variant13-filterInvariant14-variant15-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant26-variant28-variant30-filterInvariant31-variant33-variant34-variant36-filterInvariant37-variant38-variant39-variant40-filterInvariant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,9:68:99:105,0,1674:21,38,0,9
chr1	25780668	.	C	T	409.24	PASS	AC=1;AF=0.677;AN=2;DP=1468;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:536,0,459:10,5,12,7
chr1	25780889	.	A	ATG	479.1	PASS	AC=1;AF=0.679;AN=2;DP=571;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:333,0,555:2,13,0,9
chr1	25780893	.	A	G	488.16	PASS	AC=1;AF=0.683;AN=2;DP=544;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:333,0,555:2,13,0,9
chr1	25785451	.	A	G	279.28	PASS	AC=1;AF=0.677;AN=2;DP=1316;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:545,0,612:4,17,4,15
chr1	25825781	.	G	A	787.32	PASS	AC=1;AF=0.677;AN=2;DP=1698;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:858,0,1063:14,20,10,18
chr1	25825950	.	G	T	810.97	PASS	AC=1;AF=0.682;AN=2;DP=2020;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,37:64:99:1399,0,587:15,12,24,13
chr1	25825956	.	T	C	364.6	PASS	AC=1;AF=0.677;AN=2;DP=2088;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,37:67:99:880,0,1259:18,12,25,12
chr1	25826328	.	G	A	1996.74	PASS	AC=1;AF=0.677;AN=2;DP=5662;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,65:152:99:1562,0,2235:54,33,41,24
chr1	25826502	.	A	G	3986.17	PASS	AC=1;AF=0.677;AN=2;DP=10764;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:165,163:328:99:3945,0,4145:87,78,88,75
chr1	25870018	.	C	G	972.02	PASS	AC=2;AF=0.966;AN=2;DP=776;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:631,57,0:0,0,14,5
chr1	25880261	.	CAA	C,CA	44.75	PASS	AC=0,1;AF=0.2,0.35;AN=2;DP=355;set=variant-variant2-variant5-variant11-variant13-variant14-variant15-variant16-variant19-variant24-variant25-variant26-variant29-variant30-variant33-variant35-variant38-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:12:52:3,2,6,1
chr1	25889342	.	CAG	C	838.25	PASS	AC=1;AF=0.667;AN=2;DP=2793;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,31:70:99:1163,0,1509:18,21,14,17
chr1	25889422	.	C	T	622.27	PASS	AC=1;AF=0.667;AN=2;DP=2299;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:736,0,1027:19,18,14,16
chr1	25889632	.	T	C	632.25	PASS	AC=1;AF=0.667;AN=2;DP=1749;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,16:48:99:362,0,771:13,19,7,9
chr1	25889672	.	G	A	306.28	PASS	AC=1;AF=0.639;AN=2;DP=1086;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:304,0,648:6,16,6,7
chr1	25890050	.	A	G	511.51	PASS	AC=1;AF=0.681;AN=2;DP=2647;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,41:88:99:1121,0,1295:34,13,31,10
chr1	25890189	.	A	G	1597.92	PASS	AC=2;AF=0.697;AN=2;DP=9765;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,300:301:99:9469,858,0:1,0,163,137
chr1	25890373	.	G	A	1574.86	PASS	AC=1;AF=0.5;AN=2;DP=114;FS=3.946;FractionInformativeReads=1;MQ=60;MQRankSum=-1.272;QD=13.81;ReadPosRankSum=1.794;SOR=1.138;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,56:114:99:1603,0,1600:18,40,13,43
chr1	25893221	.	G	T	480.36	PASS	AC=1;AF=0.629;AN=2;DP=889;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:762,0,740:19,5,20,8
chr1	25893242	.	T	C	701.9	PASS	AC=1;AF=0.618;AN=2;DP=1378;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:850,0,810:21,8,21,12
chr1	25893927	.	AT	A	390.39	PASS	AC=1;AF=0.597;AN=2;DP=2441;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,40:84:99:1028,0,1141:26,18,19,21
chr1	25894468	.	C	CTG	2363.07	PASS	AC=2;AF=0.989;AN=2;DP=2864;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2980,201,0:0,0,29,38
chr1	25894853	.	G	T	1262.4	PASS	AC=1;AF=0.625;AN=2;DP=3432;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,51:97:99:1370,0,1105:22,24,19,32
chr1	25895238	.	C	T	1002.59	PASS	AC=1;AF=0.641;AN=2;DP=2343;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,44:77:99:1239,0,737:13,20,14,30
chr1	25895277	.	G	A	442.93	PASS	AC=1;AF=0.5;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant9-variant20-variant26-variant31-variant35-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:678,0,882:9,22,9,18
chr1	25895406	.	C	T	262.46	PASS	AC=1;AF=0.63;AN=2;DP=364;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant31-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:145,0,157:2,4,2,3
chr1	25944741	.	T	C	826.72	PASS	AC=1;AF=0.5;AN=2;DP=537;MQ=60;set=variant10-variant13-variant34-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:67,35:102:99:683,0,1614:33,34,18,17
chr1	25944849	.	C	T	769.75	PASS	AC=1;AF=0.5;AN=2;DP=342;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant34-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,23:63:99:490,0,1067:19,21,14,9
chr1	26085048	.	AG	A	1214.14	PASS	AC=2;AF=0.886;AN=2;DP=2798;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1774,174,0:0,0,43,15
chr1	26089977	.	CAAAAAA	CAA,CAAAAAAA,CAAAA,CAAA,CA,CAAAAAAAA,C,CAAAAA	346.26	PASS	AC=0,1,0,0,0,0,0,0;AF=0.021,0.25,0.042,0.063,0.021,0.042,0.021,0.063;AN=2;DP=829;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant19-variant20-variant21-variant23-variant24-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:25:94:11,1,7,6
chr1	26090072	.	A	G	2651.58	PASS	AC=2;AF=0.886;AN=2;DP=4375;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3056,285,0:0,0,41,54
chr1	26098107	.	G	A	1547.39	PASS	AC=2;AF=0.797;AN=2;DP=2280;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1796,168,0:0,0,39,17
chr1	26098333	.	G	A	1034.2	PASS	AC=2;AF=0.875;AN=2;DP=2090;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1345,115,0:0,0,9,30
chr1	26107321	.	A	C	324.19	PASS	AC=2;AF=0.864;AN=2;DP=701;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:427,42,0:0,0,8,6
chr1	26107688	.	C	A	1416.13	PASS	AC=2;AF=0.852;AN=2;DP=3836;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2648,242,0:0,0,39,42
chr1	26109237	.	A	G	2457.78	PASS	AC=2;AF=0.763;AN=2;DP=3450;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3273,282,0:0,0,22,72
chr1	26110065	.	A	G	1723.91	PASS	AC=2;AF=0.757;AN=2;DP=2534;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2765,258,0:0,0,56,30
chr1	26110143	.	G	A	3728.27	PASS	AC=2;AF=0.763;AN=2;DP=5097;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4057,390,0:0,0,67,64
chr1	26111378	.	AAG	A	1123.37	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0;FractionInformativeReads=0.955;MQ=60;MQRankSum=1.493;QD=17.02;ReadPosRankSum=0.833;SOR=0.638;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:1161,0,1240:16,17,15,15
chr1	26111715	.	CTT	C,CT	82.86	PASS	AC=0,2;AF=0.03,0.833;AN=2;DP=331;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:5:15:0,0,1,4
chr1	26111743	.	G	A	359.75	PASS	AC=2;AF=0.855;AN=2;DP=209;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:82,6,0:0,0,0,2
chr1	26112414	.	CA	CAAA,C,CAA,CAAAA	518.21	PASS	AC=0,0,1,0;AF=0.016,0.097,0.435,0.016;AN=2;DP=2485;set=variant3-variant7-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-filterInvariant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/3:57:99:17,6,23,11
chr1	26112631	.	T	C	1763.47	PASS	AC=1;AF=0.5;AN=2;DP=154;FS=2.971;FractionInformativeReads=1;MQ=60;MQRankSum=-0.939;QD=11.45;ReadPosRankSum=0.478;SOR=0.97;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:83,71:154:99:1792,0,1981:33,50,24,47
chr1	26127020	.	G	A	635.57	PASS	AC=2;AF=0.86;AN=2;DP=704;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:479,39,0:0,0,7,6
chr1	26127425	.	G	A	114.75	PASS	AC=2;AF=0.638;AN=2;DP=672;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:805,63,0:0,0,16,5
chr1	26128307	.	C	T	636.35	PASS	AC=2;AF=0.881;AN=2;DP=710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:768,63,0:0,0,16,5
chr1	26131654	.	G	A	582.1	PASS	AC=2;AF=0.837;AN=2;DP=1764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1686,152,0:0,0,33,18
chr1	26138136	.	C	A	2464.28	PASS	AC=2;AF=0.833;AN=2;DP=11682;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,272:272:99:7956,812,0:0,0,142,130
chr1	26138262	.	T	C	4947.17	PASS	AC=2;AF=0.869;AN=2;DP=7058;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4555,441,0:0,0,51,96
chr1	26139137	.	C	T	759.64	PASS	AC=2;AF=0.821;AN=2;DP=1390;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:636,57,0:0,0,10,9
chr1	26139392	.	A	G	899.66	PASS	AC=2;AF=0.857;AN=2;DP=1594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1379,140,0:0,0,17,30
chr1	26139444	.	G	A	248.06	PASS	AC=2;AF=0.817;AN=2;DP=764;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:602,60,0:0,0,7,13
chr1	26139879	.	C	G	510.58	PASS	AC=2;AF=0.845;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:761,60,0:0,0,17,3
chr1	26139919	.	C	T	973.17	PASS	AC=2;AF=0.845;AN=2;DP=1522;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1369,120,0:0,0,29,11
chr1	26140573	.	C	A	1896.39	PASS	AC=2;AF=0.821;AN=2;DP=4988;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3225,306,0:0,0,40,62
chr1	26143704	.	A	ATTTTG	591.25	PASS	AC=1;AF=0.857;AN=2;DP=1100;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:389,0,607:4,6,2,8
chr1	26143931	.	T	C	337.32	PASS	AC=1;AF=0.872;AN=2;DP=346;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:174,0,309:7,4,5,0
chr1	26144437	.	TC	T	941.05	PASS	AC=1;AF=0.833;AN=2;DP=2024;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:588,0,328:6,9,12,11
chr1	26146392	.	C	G	834.75	PASS	AC=2;AF=0.857;AN=2;DP=1338;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:749,72,0:0,0,16,8
chr1	26146514	.	G	C	2192.7	PASS	AC=1;AF=0.7;AN=2;DP=1522;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,24:52:99:844,0,1556:16,12,12,12
chr1	26146539	.	A	C	2182.45	PASS	AC=1;AF=0.845;AN=2;DP=2763;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:858,0,1579:17,11,13,10
chr1	26146884	.	C	G	4132.53	PASS	AC=1;AF=0.845;AN=2;DP=4544;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,42:83:99:1194,0,1201:16,25,15,27
chr1	26148011	.	G	A	1035.48	PASS	AC=1;AF=0.845;AN=2;DP=1711;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,9:29:99:215,0,534:12,8,7,2
chr1	26149356	.	GCT	G	807.4	PASS	AC=1;AF=0.845;AN=2;DP=1918;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,16:47:99:579,0,1415:18,13,10,6
chr1	26150023	.	C	T	2652.05	PASS	AC=1;AF=0.833;AN=2;DP=3847;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,58:120:99:1580,0,1866:36,26,31,27
chr1	26152666	.	T	C	2329.75	PASS	AC=1;AF=0.845;AN=2;DP=2235;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,20:54:99:580,0,907:21,13,16,4
chr1	26152758	.	A	G	5017.82	PASS	AC=1;AF=0.845;AN=2;DP=6391;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,76:166:99:1752,0,2129:50,40,40,36
chr1	26158900	.	A	ACT	1379.27	PASS	AC=1;AF=0.845;AN=2;DP=1837;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:991,0,1021:13,14,15,11
chr1	26158962	.	A	G	1255.14	PASS	AC=1;AF=0.845;AN=2;DP=2013;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:597,0,479:9,11,12,12
chr1	26185882	.	G	A	790.45	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=7.164;FractionInformativeReads=1;MQ=60;MQRankSum=-0.682;QD=11.62;ReadPosRankSum=0.436;SOR=0.224;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,32:68:99:819,0,1020:8,28,12,20
chr1	26187778	.	G	C	2575.44	PASS	AC=2;AF=0.989;AN=2;DP=3997;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3086,331,0:0,0,66,45
chr1	26188238	.	G	A	308.04	PASS	AC=1;AF=0.717;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:73:159,0,73:0,2,0,4
chr1	26188625	.	G	T	97.67	PASS	AC=1;AF=0.661;AN=2;DP=573;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:289,0,501:12,7,8,6
chr1	26197063	.	C	T	53.54	PASS	AC=1;AF=0.708;AN=2;DP=161;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant14-variant15-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:185,0,112:3,2,5,1
chr1	26197637	.	G	A	1863.1	PASS	AC=1;AF=0.5;AN=2;DP=522;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,58:130:99:1542,0,2029:24,48,16,42
chr1	26232356	.	C	A	1477.73	PASS	AC=1;AF=0.661;AN=2;DP=1439;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:380,0,623:13,13,11,7
chr1	26232739	.	G	C	143.97	PASS	AC=1;AF=0.5;AN=2;DP=316;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant13-variant17-variant18-variant23-variant24-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:163,0,724:3,5,5,0
chr1	26232743	.	A	C	143.99	PASS	AC=1;AF=0.5;AN=2;DP=252;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant13-variant17-variant18-variant24-variant26-variant28-variant31-variant32-variant34-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:160,0,755:5,6,5,0
chr1	26232746	.	A	C	169.17	PASS	AC=1;AF=0.5;AN=2;DP=56;FractionInformativeReads=1;MQ=60;set=variant10-variant17-variant18-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,3:15:99:160,0,755:6,6,3,0
chr1	26287300	.	CT	C,CTTT	496.49	PASS	AC=1,0;AF=0.838,0.013;AN=2;DP=975;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:13:9:1,1,2,9
chr1	26287563	.	T	C	256.96	PASS	AC=2;AF=0.893;AN=2;DP=465;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:369,30,0:0,0,8,2
chr1	26303505	.	CTTTTTTTT	C,CTTTTTTT,CTTTTTT,CTTTT	267.72	PASS	AC=1,0,0,0;AF=0.444,0.111,0.056,0.056;AN=2;DP=120;set=variant8-variant9-variant15-variant18-variant21-variant25-variant30-variant32-variant41	GT:DP:GQ:SB	0/1:3:30:0,1,0,2
chr1	26310213	.	T	C	388.48	PASS	AC=2;AF=0.742;AN=2;DP=1228;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1288,122,0:0,0,27,14
chr1	26310394	.	A	G	1793.04	PASS	AC=2;AF=0.742;AN=2;DP=3019;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,82:83:99:2637,215,0:1,0,40,42
chr1	26310836	.	G	T	656.26	PASS	AC=2;AF=0.742;AN=2;DP=1295;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1025,96,0:0,0,18,14
chr1	26314564	.	T	C	574.28	PASS	AC=2;AF=0.875;AN=2;DP=852;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:716,51,0:0,0,16,1
chr1	26324520	.	T	C	200.02	PASS	AC=2;AF=0.75;AN=2;DP=657;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:655,63,0:0,0,11,10
chr1	26324582	.	T	G	251.34	PASS	AC=2;AF=1;AN=2;DP=1141;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:939,99,0:0,0,18,15
chr1	26348474	.	A	G	2956.43	PASS	AC=2;AF=0.864;AN=2;DP=4345;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2637,251,0:0,0,41,43
chr1	26349245	.	C	T	1515.56	PASS	AC=1;AF=0.5;AN=2;DP=993;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant14-variant25-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,65:122:99:1766,0,1625:27,30,34,31
chr1	26349967	.	C	T	647.02	PASS	AC=2;AF=0.661;AN=2;DP=2636;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3466,328,0:0,0,38,72
chr1	26355757	.	C	T	2601.81	PASS	AC=1;AF=0.5;AN=2;DP=425;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:102,119:221:99:3049,0,2489:58,44,66,53
chr1	26357178	.	AC	ACC,A,ACCC	787.56	PASS	AC=1,0,0;AF=0.447,0.026,0.026;AN=2;DP=1172;MQ=60;set=variant3-variant4-variant7-variant8-variant11-variant14-variant15-variant18-variant21-variant22-variant25-variant29-variant32-variant33-variant34-variant37-variant38-variant39-variant41	GT:DP:GQ:SB	0/1:48:99:14,13,9,12
chr1	26357656	.	C	A	2577.79	PASS	AC=2;AF=0.656;AN=2;DP=6765;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:4946,484,0:0,0,81,81
chr1	26357855	.	A	G	1378.46	PASS	AC=2;AF=1;AN=2;DP=2855;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2330,215,0:0,0,34,38
chr1	26358752	.	T	TA	2235.08	PASS	AC=2;AF=0.864;AN=2;DP=3728;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3374,286,0:0,0,70,24
chr1	26362194	.	T	C	1135.36	PASS	AC=2;AF=0.647;AN=2;DP=3964;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:5000,456,0:0,0,76,76
chr1	26364109	.	T	G	31.24	PASS	AC=1;AF=0.5;AN=2;DP=121;MQ=60;set=filterInvariant6-variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,12:37:99:117,0,575:19,6,0,12
chr1	26364249	.	C	T	441.26	PASS	AC=2;AF=0.652;AN=2;DP=1569;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1446,132,0:0,0,25,19
chr1	26364371	.	T	C	410.54	PASS	AC=1;AF=0.65;AN=2;DP=1649;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,37:67:99:990,0,827:17,13,21,16
chr1	26365374	.	T	G	2206.39	PASS	AC=1;AF=0.65;AN=2;DP=4905;set=variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,74:144:99:1721,0,1507:34,36,37,37
chr1	26365549	.	C	T	972.83	PASS	AC=2;AF=0.652;AN=2;DP=2998;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2704,237,0:0,0,39,40
chr1	26368261	.	G	A	1976.29	PASS	AC=1;AF=0.5;AN=2;DP=674;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:92,87:179:99:2286,0,2446:33,59,33,54
chr1	26368787	.	C	T	49.76	PASS	AC=2;AF=0.712;AN=2;DP=198;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:448,33,0:0,0,9,2
chr1	26372144	.	A	G	850.02	PASS	AC=2;AF=0.864;AN=2;DP=2025;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1222,108,0:0,0,24,12
chr1	26372605	.	G	C	254.91	PASS	AC=2;AF=0.872;AN=2;DP=877;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:503,45,0:0,0,5,10
chr1	26377880	.	G	A	436.85	PASS	AC=1;AF=0.617;AN=2;DP=1495;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:564,0,786:19,7,15,8
chr1	26378002	.	C	T	1344.39	PASS	AC=1;AF=0.621;AN=2;DP=2398;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,33:89:99:1008,0,1787:36,20,24,9
chr1	26383645	.	CCAGGGGT	C	1555.08	PASS	AC=1;AF=0.5;AN=2;DP=1345;MQ=60;set=variant2-variant3-variant8-variant11-variant14-variant15-variant21-variant25-variant28-variant33-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,60:114:99:2358,0,4198:30,24,35,25
chr1	26383875	.	A	G	850.66	PASS	AC=1;AF=0.625;AN=2;DP=1142;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:626,0,677:5,17,3,16
chr1	26385003	.	T	C	7963.82	PASS	AC=1;AF=0.645;AN=2;DP=8043;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,117:242:99:2717,0,3063:71,54,68,49
chr1	26385150	.	G	C	6623.06	PASS	AC=1;AF=0.65;AN=2;DP=5833;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,81:193:99:1999,0,2926:46,66,28,53
chr1	26449335	.	CAA	C	3255.97	PASS	AC=1;AF=0.5;AN=2;DP=2479;MQ=60;set=variant-variant2-variant3-variant8-variant11-variant14-variant15-variant19-variant23-variant25-variant28-variant30-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,65:148:99:2474,0,3683:39,44,33,32
chr1	26485517	.	G	C	346.92	PASS	AC=2;AF=0.563;AN=2;DP=753;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant14-variant15-variant19-variant23-variant28-variant30-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1357,146,0:0,0,25,24
chr1	26487940	.	A	G	4376.75	PASS	AC=2;AF=0.559;AN=2;DP=5987;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant14-variant15-variant19-variant23-variant28-variant30-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,327:328:99:9706,972,0:1,0,156,171
chr1	26496455	.	C	T	2298.07	PASS	AC=2;AF=0.559;AN=2;DP=3074;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant14-variant15-variant19-variant23-variant28-variant30-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,177:177:99:5318,529,0:0,0,97,80
chr1	26497340	.	A	C	1664.21	PASS	AC=2;AF=0.866;AN=2;DP=3441;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2128,200,0:0,0,29,38
chr1	26510439	.	G	A	78.51	PASS	AC=2;AF=0.667;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant22-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:79,6,0:0,0,0,2
chr1	26511700	.	A	G	1643.18	PASS	AC=2;AF=0.672;AN=2;DP=6682;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5366,525,0:0,0,73,102
chr1	26524706	.	A	G	4831.54	PASS	AC=2;AF=0.875;AN=2;DP=6289;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4755,423,0:0,0,77,65
chr1	26526554	.	G	A	1246.39	PASS	AC=1;AF=0.633;AN=2;DP=2362;MQ=60;set=variant5-variant6-variant7-variant10-variant13-variant14-variant18-variant23-variant27-variant29-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,86:153:99:2192,0,1624:28,39,34,52
chr1	26527304	.	T	C	694.47	PASS	AC=1;AF=0.625;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant13-variant14-variant18-variant23-variant24-variant27-variant29-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:294,0,930:11,3,8,0
chr1	26527310	.	C	G	723.17	PASS	AC=1;AF=0.625;AN=2;DP=408;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant13-variant14-variant18-variant23-variant24-variant27-variant29-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:294,0,930:11,3,7,0
chr1	26527783	.	G	A	169.9	PASS	AC=1;AF=0.529;AN=2;DP=350;MQ=60;set=variant-variant2-variant3-variant8-variant14-variant15-variant19-variant22-variant23-variant28-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:143,0,321:8,2,5,1
chr1	26527809	.	A	C	892.97	PASS	AC=1;AF=0.632;AN=2;DP=514;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant14-variant18-variant23-variant24-variant27-variant29-variant33-variant34-variant35-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:477,0,342:8,1,10,2
chr1	26527810	.	G	A	892.97	PASS	AC=1;AF=0.632;AN=2;DP=531;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant14-variant18-variant23-variant24-variant27-variant29-variant33-variant34-variant35-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:477,0,342:8,1,10,2
chr1	26527951	.	G	A	2093.01	PASS	AC=1;AF=0.611;AN=2;DP=2595;MQ=60;set=variant4-variant6-variant7-variant10-variant13-variant14-variant18-variant23-variant24-variant27-variant29-variant33-variant34-variant35-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,78:152:99:1743,0,1899:46,28,41,37
chr1	26529121	.	G	C	1150.51	PASS	AC=1;AF=0.55;AN=2;DP=2885;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,40:85:99:990,0,1258:22,23,18,22
chr1	26560945	.	C	G	587.59	PASS	AC=2;AF=0.919;AN=2;DP=864;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:74:864,74,0:0,0,3,22
chr1	26560962	.	C	T	197.71	PASS	AC=1;AF=0.533;AN=2;DP=217;FractionInformativeReads=1;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:349,0,346:1,9,1,9
chr1	26582091	.	G	A	1264.65	PASS	AC=1;AF=0.567;AN=2;DP=2702;MQ=60;set=variant-variant2-variant3-variant8-variant14-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,91:208:99:2009,0,2729:58,59,44,47
chr1	26596080	.	G	A	604.25	PASS	AC=1;AF=0.531;AN=2;DP=922;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,32:56:99:823,0,599:11,13,13,19
chr1	26597189	.	G	A	49.73	PASS	AC=1;AF=0.567;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:87:246,0,87:3,0,6,2
chr1	26597435	.	G	A	3720.03	PASS	AC=2;AF=0.919;AN=2;DP=5917;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4173,410,0:0,0,63,74
chr1	26597673	.	G	A	464.72	PASS	AC=2;AF=0.667;AN=2;DP=1184;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:902,81,0:0,0,10,17
chr1	26597781	.	C	T	125.44	PASS	AC=1;AF=0.545;AN=2;DP=107;FractionInformativeReads=1;MQ=60;set=variant6-variant18-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:140,0,259:4,7,3,4
chr1	26601385	.	G	A	2357.09	PASS	AC=1;AF=0.757;AN=2;DP=2599;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:845,0,817:21,14,21,12
chr1	26601570	.	A	G	1106.42	PASS	AC=1;AF=0.563;AN=2;DP=1013;FractionInformativeReads=1;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,38:65:99:1096,0,728:14,13,16,22
chr1	26603883	.	G	GAA	1569.91	PASS	AC=1;AF=0.531;AN=2;DP=1239;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,33:87:99:1254,0,2445:30,24,17,16
chr1	26603993	.	A	C	2305.86	PASS	AC=2;AF=0.919;AN=2;DP=3157;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1960,188,0:0,0,27,36
chr1	26604071	.	T	G	890.69	PASS	AC=1;AF=0.531;AN=2;DP=899;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,27:53:99:849,0,741:11,15,14,13
chr1	26605069	.	T	C	673.14	PASS	AC=1;AF=0.531;AN=2;DP=647;FractionInformativeReads=1;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:512,0,665:11,14,12,7
chr1	26606029	.	G	GA	1186.3	PASS	AC=1;AF=0.531;AN=2;DP=1346;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:1057,0,1033:17,22,20,20
chr1	26606174	.	A	C	1479.42	PASS	AC=1;AF=0.531;AN=2;DP=1775;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,42:98:99:1017,0,1550:33,23,20,22
chr1	26607726	.	T	G	1133.46	PASS	AC=1;AF=0.531;AN=2;DP=1737;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,41:92:99:1063,0,1332:21,30,19,22
chr1	26608649	.	G	A	2068.28	PASS	AC=1;AF=0.567;AN=2;DP=2225;MQ=60;set=variant-variant2-variant3-variant8-variant14-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,77:142:99:1871,0,1540:27,38,35,42
chr1	26608761	.	C	T	1570.61	PASS	AC=1;AF=0.5;AN=2;DP=1589;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:68,38:106:99:1132,0,2470:37,31,17,21
chr1	26608782	.	C	T	695.73	PASS	AC=1;AF=0.567;AN=2;DP=1449;set=variant-variant2-variant3-variant8-variant14-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,59:93:99:2056,0,1243:17,17,36,23
chr1	26608811	.	TCCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	T	1374.15	PASS	AC=1;AF=0.5;AN=2;DP=5812;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-variant10-variant12-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant19-filterInvariant21-variant24-variant26-filterInvariant29-variant31-filterInvariant32-variant33-filterInvariant35-variant36-variant37-variant38-filterInvariant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,18:140:99:293,0,4863:75,47,2,16
chr1	26608814	.	A	G	1616	PASS	AC=1;AF=0.57;AN=2;DP=4216;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,67:86:99:2819,0,459:3,16,42,25
chr1	26608825	.	TGGGGCCG	T	1848.41	PASS	AC=1;AF=0.5;AN=2;DP=4076;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,42:90:99:1616,0,1752:20,28,29,13
chr1	26608835	.	ACCGGGACCGGGACTGGG	A	1849.13	PASS	AC=1;AF=0.5;AN=2;DP=4218;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,41:91:99:1597,0,1997:21,29,28,13
chr1	26608848	.	CTGGGGCCGGG	C	2167.02	PASS	AC=1;AF=0.531;AN=2;DP=1603;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:68,24:92:99:880,0,2743:35,33,16,8
chr1	26608859	.	ACCGGGACC	A	2187.94	PASS	AC=1;AF=0.531;AN=2;DP=1652;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,24:97:99:772,0,3085:41,32,16,8
chr1	26608877	.	GCCGGGA	G	2246.68	PASS	AC=1;AF=0.531;AN=2;DP=1812;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:76,30:106:99:1007,0,3049:43,33,21,9
chr1	26609259	.	C	T	8341.48	PASS	AC=1;AF=0.757;AN=2;DP=11310;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:156,157:313:99:3662,0,3834:77,79,85,72
chr1	26609307	.	G	T	7500.24	PASS	AC=2;AF=0.919;AN=2;DP=11153;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,294:295:99:8670,833,0:0,1,138,156
chr1	26610891	.	A	C	4571.87	PASS	AC=2;AF=0.919;AN=2;DP=6580;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4089,414,0:0,0,65,73
chr1	26612042	.	A	G	1725.4	PASS	AC=2;AF=0.919;AN=2;DP=2265;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,57:58:99:1756,141,0:1,0,21,36
chr1	26612297	.	C	A	1170.35	PASS	AC=1;AF=0.5;AN=2;DP=1144;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:838,0,861:22,5,19,10
chr1	26612460	.	G	A	1838.98	PASS	AC=1;AF=0.531;AN=2;DP=2597;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:86,75:161:99:1625,0,2085:38,48,36,39
chr1	26620846	.	C	CA	796.1	PASS	AC=2;AF=0.919;AN=2;DP=2493;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2263,177,0:0,0,23,36
chr1	26623641	.	C	T	510.53	PASS	AC=1;AF=0.531;AN=2;DP=523;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:552,0,692:8,15,7,12
chr1	26627478	.	T	C	2730.53	PASS	AC=1;AF=0.795;AN=2;DP=8380;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,120:217:99:2815,0,2199:52,45,59,61
chr1	26629465	.	G	C	1703.75	PASS	AC=1;AF=0.795;AN=2;DP=2787;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,32:63:99:833,0,761:15,16,12,20
chr1	26633317	.	G	C	176.17	PASS	AC=2;AF=0.875;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.666;ReadPosRankSum=0.067;set=variant2-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:170,12,0:0,0,0,4
chr1	26633320	.	T	G	176.17	PASS	AC=2;AF=0.786;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant18-variant25-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:134,9,0:0,0,0,3
chr1	26644399	.	C	T	746.2	PASS	AC=1;AF=0.531;AN=2;DP=668;FractionInformativeReads=1;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:529,0,487:13,6,14,5
chr1	26644698	.	C	T	1219.24	PASS	AC=1;AF=0.531;AN=2;DP=1915;FractionInformativeReads=1;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,52:115:99:1121,0,1522:30,33,25,27
chr1	26646611	.	TA	TAA,T	80.65	PASS	AC=0,1;AF=0.024,0.476;AN=2;DP=1590;set=filterInvariant2-variant3-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant9-filterInvariant11-filterInvariant12-filterInvariant18-variant22-filterInvariant23-filterInvariant24-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant31-variant32-variant33-variant36-filterInvariant41	GT:DP:GQ:SB	0/2:68:70:38,19,7,4
chr1	26646726	.	A	G	4324.34	PASS	AC=1;AF=0.795;AN=2;DP=6308;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,80:162:99:3036,0,4050:38,44,41,39
chr1	26646730	.	A	G	4288.42	PASS	AC=1;AF=0.795;AN=2;DP=6240;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,79:160:99:3021,0,4019:38,43,40,39
chr1	26648381	.	C	T	1354.39	PASS	AC=1;AF=0.563;AN=2;DP=1185;MQ=60;set=variant6-variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:708,0,624:16,5,18,6
chr1	26648551	.	G	C	5256.84	PASS	AC=1;AF=0.803;AN=2;DP=9150;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,88:206:99:2376,0,3074:68,50,52,36
chr1	26648838	.	G	T	658.67	PASS	AC=1;AF=0.533;AN=2;DP=667;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:681,0,495:3,14,5,18
chr1	26650550	.	C	A	281.52	PASS	AC=1;AF=0.705;AN=2;DP=2646;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:885,0,797:20,8,25,8
chr1	26654937	.	G	C	1222.36	PASS	AC=2;AF=0.845;AN=2;DP=2685;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2076,206,0:0,0,28,41
chr1	26655208	.	C	T	189.7	PASS	AC=1;AF=0.692;AN=2;DP=1089;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:366,0,359:10,2,10,8
chr1	26655462	.	C	T	161.9	PASS	AC=1;AF=0.692;AN=2;DP=831;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:425,0,169:3,5,3,11
chr1	26655507	.	C	A	90.15	PASS	AC=1;AF=0.681;AN=2;DP=375;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:76:120,0,76:0,2,0,3
chr1	26658011	.	G	A	632.75	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=0.968;FractionInformativeReads=1;MQ=60;MQRankSum=-1.438;QD=8.79;ReadPosRankSum=-2.073;SOR=0.53;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,28:72:99:661,0,1239:30,14,18,10
chr1	26662774	.	C	T	2688.6	PASS	AC=2;AF=0.845;AN=2;DP=5165;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3054,311,0:0,0,57,48
chr1	26662904	.	C	T	2362.7	PASS	AC=1;AF=0.567;AN=2;DP=2174;MQ=60;set=variant-variant2-variant3-variant8-variant14-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,71:137:99:1687,0,1558:32,34,33,38
chr1	26663362	.	C	T	1806.38	PASS	AC=1;AF=0.692;AN=2;DP=5850;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,80:131:99:1845,0,1266:21,30,41,39
chr1	26664219	.	T	C	333.47	PASS	AC=1;AF=0.567;AN=2;DP=509;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant14-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:304,0,352:4,9,3,8
chr1	26664968	.	C	T	1004.89	PASS	AC=1;AF=0.667;AN=2;DP=3819;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,29:95:99:556,0,1709:30,36,15,14
chr1	26670444	.	G	T	1018.28	PASS	AC=1;AF=0.571;AN=2;DP=1605;MQ=60;set=variant-variant2-variant3-variant8-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,59:127:99:1523,0,1665:37,31,28,31
chr1	26670609	.	C	T	2715.71	PASS	AC=1;AF=0.571;AN=2;DP=2888;MQ=60;set=variant-variant2-variant3-variant8-variant15-variant19-variant23-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,91:219:99:2276,0,3484:72,56,51,40
chr1	26670752	.	C	T	3809.97	PASS	AC=1;AF=0.545;AN=2;DP=3297;MQ=60;set=variant4-variant6-variant7-variant8-variant12-variant20-variant24-variant32-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:172,123:295:99:3055,0,4222:81,91,51,72
chr1	26671538	.	AGCAC	A	2388.33	PASS	AC=1;AF=0.634;AN=2;DP=8148;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,19:150:81:81,0,5607:59,72,10,9
chr1	26672187	.	G	A	2131.83	PASS	AC=1;AF=0.5;AN=2;DP=419;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,108:217:99:2844,0,3017:49,60,51,57
chr1	26672364	.	C	T	2179.69	PASS	AC=1;AF=0.5;AN=2;DP=367;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,92:180:99:2465,0,2360:47,41,49,43
chr1	26673138	.	G	GCCT	3729.02	PASS	AC=1;AF=0.5;AN=2;DP=407;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:96,104:200:99:4136,0,3906:41,55,46,58
chr1	26673220	.	A	G	1103.05	PASS	AC=1;AF=0.545;AN=2;DP=1036;MQ=60;set=variant4-variant6-variant7-variant8-variant12-variant20-variant24-variant32-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,57:119:99:1695,0,1575:22,40,16,41
chr1	26689659	.	G	A	131.85	PASS	AC=1;AF=0.559;AN=2;DP=1109;MQ=60;set=variant-variant2-variant3-variant8-variant15-variant16-variant19-variant22-variant23-variant26-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,25:63:99:570,0,967:17,21,10,15
chr1	26691174	.	C	A	2782.3	PASS	AC=1;AF=0.559;AN=2;DP=4197;MQ=60;set=variant-variant2-variant3-variant8-variant15-variant16-variant19-variant22-variant23-variant26-variant30-variant31-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,115:241:99:2612,0,3083:62,64,59,56
chr1	26691286	.	CCCACCGAGCGCTGGGGTGCCCCAG	C	3318.86	PASS	AC=1;AF=0.5;AN=2;DP=1150;MQ=60;set=variant4-variant6-variant7-variant12-variant14-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,79:160:99:3017,0,17425:31,50,34,45
chr1	26694059	.	G	C	334.17	PASS	AC=1;AF=0.5;AN=2;DP=194;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant12-variant14-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:374,0,281:8,2,10,1
chr1	26694118	.	G	T	952.65	PASS	AC=1;AF=0.5;AN=2;DP=113;FractionInformativeReads=1;MQ=60;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:602,0,460:13,5,14,7
chr1	26694245	.	T	C	4717.53	PASS	AC=1;AF=0.604;AN=2;DP=2714;MQ=60;set=variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,55:100:99:1451,0,1215:26,19,34,21
chr1	26694932	.	C	T	859.79	PASS	AC=1;AF=0.5;AN=2;DP=132;FractionInformativeReads=1;MQ=60;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:917,0,1020:26,11,24,7
chr1	26695239	.	G	C	39.16	PASS	AC=1;AF=0.5;AN=2;DP=26;FractionInformativeReads=1;MQ=60;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:257,0,346:1,9,0,7
chr1	26698938	.	A	G	4492.65	PASS	AC=1;AF=0.604;AN=2;DP=3441;MQ=60;set=variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:95,65:160:99:1473,0,2520:55,40,39,26
chr1	26699157	.	T	C	1659.83	PASS	AC=1;AF=0.604;AN=2;DP=1175;set=variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:726,0,837:11,21,10,18
chr1	26699264	.	C	T	234.92	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=58.87;MQRankSum=-2.468;QD=14.68;ReadPosRankSum=1.313;SOR=1.371;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:263,0,255:2,6,1,7
chr1	26700631	.	A	G	518.7	PASS	AC=1;AF=0.536;AN=2;DP=597;MQ=60;set=variant4-variant11-variant13-variant21-variant22-variant23-variant27-variant28-variant33-variant35-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,27:52:99:665,0,649:15,10,16,11
chr1	26700795	.	T	C	815.51	PASS	AC=2;AF=1;AN=2;DP=2736;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2409,243,0:0,0,36,45
chr1	26737143	.	G	A	79.46	PASS	AC=1;AF=0.621;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:415,0,348:8,1,11,0
chr1	26752992	.	T	C	1120.14	PASS	AC=1;AF=0.83;AN=2;DP=3614;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:32,37:69:99:955,0,755:13,19,13,24
chr1	26758748	.	G	A	714.49	PASS	AC=1;AF=0.83;AN=2;DP=1279;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:528,0,1002:11,7,7,7
chr1	26758773	.	G	A	231.29	PASS	AC=1;AF=0.522;AN=2;DP=860;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant20-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:607,0,1025:13,9,9,8
chr1	26769543	.	C	CTTTTTT	417.36	PASS	AC=1;AF=0.854;AN=2;DP=486;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:99:99,0,634:2,7,0,3
chr1	26786627	.	G	A	1559.18	PASS	AC=1;AF=0.522;AN=2;DP=2749;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant20-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,57:114:99:1299,0,1381:24,33,27,30
chr1	26793776	.	G	A	1046.92	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=3.134;FractionInformativeReads=1;MQ=60;MQRankSum=-1.543;QD=14.34;ReadPosRankSum=1.167;SOR=1.083;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,39:73:99:1075,0,773:18,16,24,15
chr1	26796806	.	CT	C,CTT,CTTT	326.62	PASS	AC=0,0,1;AF=0.257,0.108,0.149;AN=2;DP=2100;set=variant2-variant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant16-variant17-variant19-variant20-variant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-variant26-variant28-variant30-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant36-variant38-filterInvariant39-variant40-filterInvariant41-variant42-variant43	GT:DP:GQ:SB	0/3:36:99:10,15,6,5
chr1	26797508	.	C	T	572.15	PASS	AC=1;AF=0.522;AN=2;DP=1861;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant20-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,33:69:99:889,0,810:16,20,11,22
chr1	26856462	.	T	G	1105.23	PASS	AC=2;AF=0.943;AN=2;DP=1542;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1269,126,0:0,0,21,21
chr1	26857954	.	T	A	420.52	PASS	AC=2;AF=0.943;AN=2;DP=684;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:327,30,0:0,0,3,7
chr1	26869610	.	G	A	1236.93	PASS	AC=2;AF=0.756;AN=2;DP=4245;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3030,314,0:0,0,64,41
chr1	26870730	.	C	G	2596.91	PASS	AC=2;AF=0.6;AN=2;DP=5070;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,205:205:99:6280,615,0:0,0,108,97
chr1	26870803	.	A	T	2013.43	PASS	AC=1;AF=0.5;AN=2;DP=182;FS=0.546;FractionInformativeReads=0.995;MQ=60;MQRankSum=0.729;QD=11.06;ReadPosRankSum=-0.024;SOR=0.744;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:96,85:181:99:2042,0,2310:43,53,37,48
chr1	26872554	.	A	G	1143.67	PASS	AC=2;AF=0.58;AN=2;DP=3131;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3907,318,0:0,0,51,54
chr1	26872570	.	T	C	1262.39	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=2.672;FractionInformativeReads=1;MQ=60;MQRankSum=-0.696;QD=13.29;ReadPosRankSum=-2.796;SOR=0.845;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,49:95:99:1291,0,1043:24,22,22,27
chr1	26879221	.	G	A	76.28	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.322;QD=9.54;ReadPosRankSum=0.322;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:105,0,121:3,2,2,1
chr1	26879376	.	T	C	707.82	PASS	AC=2;AF=0.58;AN=2;DP=1196;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1081,107,0:0,0,15,21
chr1	26879425	.	T	C	473.68	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.142;QD=13.16;ReadPosRankSum=-1.313;SOR=0.947;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:502,0,536:6,12,5,13
chr1	26879792	.	T	C	329.76	PASS	AC=2;AF=0.756;AN=2;DP=742;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:473,42,0:0,0,10,4
chr1	26879920	.	T	C	1073.75	PASS	AC=2;AF=1;AN=2;DP=3067;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,64:65:99:1935,183,0:0,1,39,25
chr1	26880026	.	G	A	1072.2	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0.858;FractionInformativeReads=1;MQ=60;MQRankSum=0.857;QD=13.92;ReadPosRankSum=0.275;SOR=0.805;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,46:77:99:1100,0,697:15,16,21,25
chr1	26880288	.	C	T	206.15	PASS	AC=1;AF=0.583;AN=2;DP=308;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:193,0,188:2,4,1,5
chr1	26880641	.	G	A	533.24	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=8.026;FractionInformativeReads=1;MQ=60;MQRankSum=0.945;QD=10.06;ReadPosRankSum=-2.358;SOR=1.799;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,20:53:99:561,0,682:18,15,15,5
chr1	26880989	.	T	C	307.3	PASS	AC=1;AF=0.56;AN=2;DP=1118;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:699,0,760:17,7,15,7
chr1	26881569	.	G	A	371.4	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=5.76;FractionInformativeReads=1;MQ=60;MQRankSum=-0.264;QD=11.61;ReadPosRankSum=-1.813;SOR=0.165;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:400,0,427:12,3,10,7
chr1	26881806	.	C	A	502.25	PASS	AC=2;AF=0.58;AN=2;DP=2201;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2774,252,0:0,0,46,38
chr1	26887150	.	A	G	1039.35	PASS	AC=2;AF=0.58;AN=2;DP=2276;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3316,319,0:0,0,70,37
chr1	26887592	.	T	C	1174.37	PASS	AC=2;AF=0.577;AN=2;DP=3314;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3813,369,0:0,0,64,59
chr1	26898142	.	A	G	644.05	PASS	AC=2;AF=0.577;AN=2;DP=2539;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3884,324,0:0,0,51,57
chr1	26898956	.	T	C	1144.71	PASS	AC=2;AF=0.577;AN=2;DP=1883;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2093,197,0:0,0,28,38
chr1	26899687	.	C	A	293.33	PASS	AC=2;AF=0.588;AN=2;DP=992;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant19-variant20-variant24-variant26-variant27-variant31-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2077,192,0:0,0,43,21
chr1	26900735	.	C	G	3020.31	PASS	AC=2;AF=0.761;AN=2;DP=5136;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3452,333,0:0,0,49,62
chr1	26901090	.	C	T	2008.95	PASS	AC=2;AF=0.705;AN=2;DP=2563;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2394,219,0:0,0,35,38
chr1	26901101	.	C	T	1138.55	PASS	AC=1;AF=0.5;AN=2;DP=406;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:1011,0,917:18,21,19,20
chr1	26901319	.	G	A	988.81	PASS	AC=1;AF=0.543;AN=2;DP=1768;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant22-variant27-variant29-variant31-variant32-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,28:65:99:698,0,939:17,20,11,17
chr1	27102188	.	A	G	1623.16	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=1.545;FractionInformativeReads=1;MQ=60;MQRankSum=-0.497;QD=14.89;ReadPosRankSum=0.418;SOR=0.543;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,61:109:99:1651,0,1074:28,20,33,28
chr1	27107650	.	TAA	TA,T,TAAAA	499.27	PASS	AC=1,0,0;AF=0.431,0.056,0.014;AN=2;DP=2808;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:67:99:18,18,17,14
chr1	27180829	.	A	C	1174.44	PASS	AC=1;AF=0.638;AN=2;DP=1568;MQ=60;set=variant3-variant6-variant7-variant8-variant11-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:421,0,635:11,11,7,9
chr1	27190440	.	C	T	212.48	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=1.399;FractionInformativeReads=1;MQ=60;MQRankSum=0.515;QD=6.07;ReadPosRankSum=0.302;SOR=0.74;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,11:35:99:241,0,761:11,13,6,5
chr1	27190821	.	GGTGTGTGTGT	GGTGTGTGT,GGTGTGT,G,GGTGTGTGTGTGT,GGTGTGTGTGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGTGT,GGTGT	1301.51	PASS	AC=1,0,0,1,0,0,0,0,0;AF=0.063,0.25,0.013,0.2,0.013,0.063,0.013,0.025,0.025;AN=2;DP=2542;set=variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/4:43:99:4,3,12,24
chr1	27206252	.	T	G	1701.95	PASS	AC=1;AF=0.5;AN=2;DP=137;FS=0.631;FractionInformativeReads=1;MQ=60;MQRankSum=-0.2;QD=12.42;ReadPosRankSum=3.076;SOR=0.611;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,69:137:99:1730,0,1670:36,32,35,34
chr1	27210721	.	T	C	3406.38	PASS	AC=2;AF=0.795;AN=2;DP=4056;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3370,315,0:0,0,49,56
chr1	27212701	.	T	C	868.84	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=2.188;FractionInformativeReads=1;MQ=60;MQRankSum=-0.812;QD=14.73;ReadPosRankSum=-0.675;SOR=0.539;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:897,0,848:16,12,15,16
chr1	27216806	.	G	A	630.18	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=12.912;FractionInformativeReads=0.983;MQ=60;MQRankSum=-0.795;QD=10.68;ReadPosRankSum=-0.954;SOR=2.331;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,23:58:99:658,0,779:15,20,4,19
chr1	27223711	.	T	C	1142.15	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=3.609;FractionInformativeReads=1;MQ=60;MQRankSum=0.578;QD=17.85;ReadPosRankSum=1.293;SOR=1.218;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,39:64:99:1170,0,620:14,11,26,13
chr1	27238150	.	A	G	1278.77	PASS	AC=2;AF=0.8;AN=2;DP=2720;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1767,177,0:0,0,32,27
chr1	27248645	.	A	G	238.64	PASS	AC=1;AF=0.536;AN=2;DP=221;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant20-variant23-variant26-variant29-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:203,0,355:3,10,1,6
chr1	27250430	.	C	T	1011.23	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.489;QD=15.8;ReadPosRankSum=-0.109;SOR=0.798;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,37:64:99:1039,0,805:20,7,28,9
chr1	27260783	.	C	T	462.72	PASS	AC=1;AF=0.5;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant20-variant23-variant29-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,8:32:99:128,0,578:14,10,5,3
chr1	27272600	.	A	ATCT	1463.51	PASS	AC=1;AF=0.5;AN=2;DP=953;MQ=60;set=variant7-variant20-variant23-variant29-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,59:123:99:2273,0,2927:26,38,26,33
chr1	27272864	.	C	T	181.63	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:210,0,372:6,10,4,6
chr1	27276778	.	C	A	313.88	PASS	AC=1;AF=0.5;AN=2;DP=88;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,14:39:99:342,0,667:11,14,4,10
chr1	27278259	.	T	C	1713.88	PASS	AC=1;AF=0.5;AN=2;DP=139;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.133;QD=12.33;ReadPosRankSum=0.584;SOR=0.707;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,72:139:99:1742,0,1786:30,37,32,40
chr1	27278521	.	G	A	1161.4	PASS	AC=1;AF=0.568;AN=2;DP=3330;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant13-variant14-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant33-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,74:175:99:1728,0,2454:48,53,34,40
chr1	27278671	.	C	T	1102.83	PASS	AC=1;AF=0.5;AN=2;DP=214;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,51:121:99:1131,0,1795:39,31,24,27
chr1	27320192	.	G	T	607.53	PASS	AC=1;AF=0.5;AN=2;DP=88;FractionInformativeReads=1;MQ=60;MQRankSum=-1.422;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,27:44:99:636,0,434:12,5,17,10
chr1	27320356	.	T	C	1808.25	PASS	AC=2;AF=1;AN=2;DP=3028;FS=0;MQ=60;MQRankSum=0.544;ReadPosRankSum=1.336;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1732,167,0:0,0,22,34
chr1	27321072	.	T	G	1008.81	PASS	AC=1;AF=0.5;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,46:94:99:1037,0,1137:31,17,24,22
chr1	27326642	.	ATAAT	A	448.47	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=5.093;FractionInformativeReads=1;MQ=60;MQRankSum=2.119;QD=13.59;ReadPosRankSum=0.239;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:486,0,1201:10,10,4,9
chr1	27327432	.	G	A	444.04	PASS	AC=1;AF=0.5;AN=2;DP=37;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:472,0,256:3,5,3,11
chr1	27327480	.	TA	T	126.03	PASS	AC=1;AF=0.5;AN=2;DP=22;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:163,0,284:3,5,0,5
chr1	27331765	.	G	T	1031.93	PASS	AC=1;AF=0.5;AN=2;DP=719;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant20-variant23-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,49:106:99:1214,0,1466:29,28,28,21
chr1	27339087	.	C	T	605.35	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0.939;FractionInformativeReads=0.985;MQ=60;MQRankSum=-1.489;QD=8.9;ReadPosRankSum=-0.824;SOR=0.68;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,27:67:99:634,0,1052:19,21,14,13
chr1	27426796	.	T	C	3762.4	PASS	AC=2;AF=0.989;AN=2;DP=6150;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4085,397,0:0,0,66,67
chr1	27427041	.	T	C	2085.08	PASS	AC=2;AF=0.989;AN=2;DP=6458;MQ=60;MQRankSum=-0.886;ReadPosRankSum=1.358;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4723,471,0:0,0,70,87
chr1	27434393	.	G	A	469.84	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=2.793;FractionInformativeReads=1;MQ=60;MQRankSum=0.328;QD=10.93;ReadPosRankSum=3.9;SOR=0.319;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:498,0,593:6,15,9,13
chr1	27440611	.	C	T	2180.68	PASS	AC=1;AF=0.5;AN=2;DP=187;FS=5.141;FractionInformativeReads=0.995;MQ=60;MQRankSum=0.993;QD=11.66;ReadPosRankSum=0.89;SOR=1.046;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:96,90:186:99:2209,0,2627:48,48,38,52
chr1	27561359	.	T	C	859.65	PASS	AC=1;AF=0.989;AN=2;DP=1243;FractionInformativeReads=1;MQ=60;MQRankSum=-0.411;ReadPosRankSum=3.388;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:10,23:33:99:535,0,141:7,3,13,10
chr1	27609980	.	T	G	2588.78	PASS	AC=1;AF=0.989;AN=2;DP=5532;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:58,55:113:99:1363,0,1605:33,25,28,27
chr1	27610069	.	C	T	2268.43	PASS	AC=1;AF=0.802;AN=2;DP=3091;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,30:77:99:690,0,1223:18,29,12,18
chr1	27679692	.	A	G	1885.48	PASS	AC=1;AF=0.732;AN=2;DP=2464;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:864,0,856:21,5,23,9
chr1	27679797	.	A	G	5478.71	PASS	AC=1;AF=0.732;AN=2;DP=8804;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,105:205:99:2440,0,2413:53,47,53,52
chr1	27680292	.	A	G	1753.76	PASS	AC=1;AF=0.775;AN=2;DP=3691;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,47:109:99:1038,0,1415:31,31,24,23
chr1	27681534	.	A	G	97.67	PASS	AC=1;AF=0.76;AN=2;DP=170;FS=0;FractionInformativeReads=1;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:78:78,0,80:2,0,2,0
chr1	27681589	.	CA	C	127.53	PASS	AC=1;AF=0.5;AN=2;DP=54;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:201,0,168:3,0,4,1
chr1	27681592	.	A	G	136.58	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:201,0,168:3,0,4,1
chr1	27682201	.	G	A	847.29	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.577;QD=11;ReadPosRankSum=-0.669;SOR=0.754;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,36:77:99:876,0,1072:21,20,19,17
chr1	27682440	.	T	TG	868.77	PASS	AC=2;AF=0.607;AN=2;DP=2631;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant29-variant30-variant31-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:4066,304,0:0,0,48,52
chr1	27682481	.	G	A	620.47	PASS	AC=2;AF=0.587;AN=2;DP=2295;set=variant-variant3-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant21-variant24-variant27-variant29-variant30-variant31-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2981,297,0:0,0,51,48
chr1	27686063	.	G	C	3024.46	PASS	AC=2;AF=0.977;AN=2;DP=4652;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3346,347,0:0,0,58,58
chr1	27687466	.	G	T	1292.5	PASS	AC=1;AF=0.523;AN=2;DP=1974;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant17-variant18-variant21-variant24-variant27-variant29-variant30-variant31-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:787,0,903:14,16,17,16
chr1	27689763	.	C	T	465.36	PASS	AC=1;AF=0.543;AN=2;DP=876;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant21-variant24-variant27-variant29-variant30-variant31-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:490,0,443:8,5,14,3
chr1	27690359	.	T	C	368.95	PASS	AC=2;AF=0.56;AN=2;DP=1302;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant27-variant29-variant30-variant31-variant34-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1796,183,0:0,0,38,23
chr1	27690644	.	A	G	1562.28	PASS	AC=2;AF=0.611;AN=2;DP=3983;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant27-variant29-variant30-variant31-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4391,425,0:0,0,77,65
chr1	27696011	.	C	T	2709.81	PASS	AC=2;AF=1;AN=2;DP=3693;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3760,311,0:0,0,18,86
chr1	27696837	.	G	T	98.73	PASS	AC=1;AF=0.55;AN=2;DP=339;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant21-variant24-variant27-variant29-variant30-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:276,0,215:3,4,7,4
chr1	27699626	.	C	T	2554.09	PASS	AC=1;AF=0.5;AN=2;DP=197;FS=2.508;FractionInformativeReads=1;MQ=60;MQRankSum=-0.642;QD=12.96;ReadPosRankSum=2.316;SOR=0.517;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,105:197:99:2582,0,2354:57,35,60,45
chr1	27705565	.	G	T	672.1	PASS	AC=2;AF=0.591;AN=2;DP=287;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant9-variant10-variant19-variant34-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,31:33:49:1054,49,0:1,1,25,6
chr1	27705915	.	C	T	263.87	PASS	AC=2;AF=0.75;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:8,34:42:11:930,11,0:8,0,9,25
chr1	27709020	.	T	C	3623.76	PASS	AC=2;AF=0.591;AN=2;DP=1319;MQ=60;set=variant2-variant4-variant9-variant10-variant19-variant34-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:4163,374,0:0,0,51,74
chr1	27720178	.	T	C	430.48	PASS	AC=2;AF=0.646;AN=2;DP=1098;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant30-variant34-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,64:66:99:2030,148,0:1,1,37,27
chr1	27736478	.	T	C	1540.2	PASS	AC=2;AF=0.75;AN=2;DP=202;FractionInformativeReads=1;MQRankSum=-1.553;ReadPosRankSum=-1.096;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3435,317,0:0,0,54,52
chr1	27755511	.	CTT	C,CT	1246.27	PASS	AC=0,1;AF=0.045,0.455;AN=2;DP=10847;set=Intersection	GT:DP:GQ:SB	0/2:153:99:25,51,26,51
chr1	27875824	.	C	T	8603.46	PASS	AC=2;AF=1;AN=2;DP=12884;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,323:323:99:9723,963,0:0,0,167,156
chr1	27876482	.	C	A	2158.5	PASS	AC=2;AF=0.743;AN=2;DP=6213;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:4925,474,0:0,0,70,89
chr1	27944000	.	T	A	1371.95	PASS	AC=2;AF=0.898;AN=2;DP=2144;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2121,177,0:0,0,15,44
chr1	27992800	.	CA	CAAAAA,CAAA,CAA,CAAAA,C	476.74	PASS	AC=0,1,0,0,0;AF=0.041,0.324,0.108,0.095,0.014;AN=2;DP=811;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:17:82:4,1,6,6
chr1	27995077	.	G	T	1730.33	PASS	AC=1;AF=0.92;AN=2;DP=3689;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:29,44:73:99:1168,0,712:13,16,11,33
chr1	28058934	.	G	A	260.08	PASS	AC=1;AF=0.5;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant10-variant19-variant27-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:202,0,443:10,6,4,3
chr1	28058990	.	G	T	518.85	PASS	AC=1;AF=0.5;AN=2;DP=401;FractionInformativeReads=1;MQ=60;set=variant10-variant19-variant27-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,33:82:99:926,0,1293:32,17,23,10
chr1	28060574	.	A	G	883.27	PASS	AC=1;AF=0.5;AN=2;DP=601;MQ=60;set=variant10-variant19-variant27-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:65,38:103:99:815,0,1649:34,31,22,16
chr1	28070939	.	G	A	171.78	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=1.734;FractionInformativeReads=1;MQ=60;MQRankSum=-1.047;QD=6.87;ReadPosRankSum=-0.142;SOR=0.307;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:200,0,465:11,5,5,4
chr1	28081857	.	T	C	749.9	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=4.625;FractionInformativeReads=1;MQ=60;MQRankSum=0.318;QD=15.3;ReadPosRankSum=1.406;SOR=0.24;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,30:49:99:778,0,525:4,15,11,19
chr1	28086277	.	GT	GTTT,GTT,G,GTTTTTTTT	468.86	PASS	AC=0,0,0,1;AF=0.083,0.167,0.167,0.083;AN=2;DP=318;set=variant10-variant19-filterInvariant24-filterInvariant30-variant34-variant41	GT:DP:GQ:SB	0/4:32:99:0,18,1,13
chr1	28086290	.	G	T	154.14	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=6.198;FractionInformativeReads=1;MQ=59.3;MQRankSum=-0.859;QD=6.17;ReadPosRankSum=-0.604;SOR=0.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,6:25:99:182,0,1402:0,19,1,5
chr1	28086955	.	C	A	2117.16	PASS	AC=2;AF=0.93;AN=2;DP=2867;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2095,206,0:0,0,32,37
chr1	28087772	.	GA	G	6782.42	PASS	AC=2;AF=0.966;AN=2;DP=8450;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:4713,475,0:0,0,93,65
chr1	28088475	.	CAA	CAAAAA,C,CA	54.91	PASS	AC=1,0,0;AF=0.3,0.1,0.1;AN=2;DP=80;MQ=60;set=variant10-variant15-variant17-variant32-variant41	GT:DP:GQ:SB	0/1:17:99:6,5,6,0
chr1	28088583	.	C	A	495.47	PASS	AC=1;AF=0.5;AN=2;DP=248;FractionInformativeReads=1;MQ=60;set=variant10-variant19-variant27-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:521,0,758:17,13,10,11
chr1	28088668	.	A	G	526.92	PASS	AC=1;AF=0.5;AN=2;DP=279;FractionInformativeReads=1;MQ=60;set=variant10-variant19-variant27-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:727,0,804:14,14,10,16
chr1	28136606	.	T	C	93.92	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.774;QD=5.22;ReadPosRankSum=-1.577;SOR=0.602;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:99:122,0,397:10,3,4,1
chr1	28209305	.	A	G	682.54	PASS	AC=1;AF=0.675;AN=2;DP=3972;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,50:101:99:1215,0,1165:26,25,28,22
chr1	28209362	.	T	C	837.94	PASS	AC=1;AF=0.675;AN=2;DP=4190;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,59:119:99:2249,0,2673:30,30,31,28
chr1	28209366	.	A	G	837.94	PASS	AC=1;AF=0.675;AN=2;DP=4186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,57:117:99:2208,0,2676:30,30,30,27
chr1	28211650	.	T	C	603.72	PASS	AC=1;AF=0.571;AN=2;DP=813;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:493,0,461:12,3,12,2
chr1	28212272	.	G	A	473.97	PASS	AC=1;AF=0.571;AN=2;DP=1286;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:628,0,499:14,4,14,7
chr1	28212806	.	C	T	1204.3	PASS	AC=1;AF=0.5;AN=2;DP=620;MQ=60;set=variant7-variant11-variant28-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,45:107:99:1145,0,1774:29,33,17,28
chr1	28212975	.	C	T	904.07	PASS	AC=1;AF=0.574;AN=2;DP=1642;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,23:61:99:572,0,1279:24,14,15,8
chr1	28213032	.	AG	A	1769.3	PASS	AC=1;AF=0.571;AN=2;DP=2651;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,36:104:99:1043,0,2217:36,32,23,13
chr1	28213157	.	T	C	1404.2	PASS	AC=1;AF=0.574;AN=2;DP=3361;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,59:116:99:1396,0,1431:23,34,24,35
chr1	28213213	.	A	G	950.48	PASS	AC=1;AF=0.574;AN=2;DP=1888;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,29:62:99:817,0,867:11,22,9,20
chr1	28218100	.	T	C	1984.12	PASS	AC=1;AF=0.571;AN=2;DP=4704;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,65:130:99:1619,0,1573:41,24,37,28
chr1	28223981	.	TAA	TA,T	163.71	PASS	AC=1,0;AF=0.54,0.04;AN=2;DP=350;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant13-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:13:65:4,0,6,3
chr1	28224312	.	C	T	457.98	PASS	AC=1;AF=0.571;AN=2;DP=537;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:374,0,376:3,10,4,10
chr1	28261593	.	T	C	1874.84	PASS	AC=1;AF=0.656;AN=2;DP=2969;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,38:103:99:950,0,1690:37,28,23,15
chr1	28261658	.	T	TG	1368.62	PASS	AC=1;AF=0.672;AN=2;DP=3094;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,42:114:99:1228,0,2332:38,34,20,22
chr1	28261902	.	C	A	229.52	PASS	AC=1;AF=0.656;AN=2;DP=615;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:198,0,597:1,14,4,6
chr1	28268573	.	C	T	566.33	PASS	AC=1;AF=0.756;AN=2;DP=1255;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:359,0,568:15,5,10,4
chr1	28268706	.	G	A	950.48	PASS	AC=1;AF=0.636;AN=2;DP=2909;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,30:86:99:633,0,1404:26,30,16,14
chr1	28268833	.	C	CG	604.28	PASS	AC=1;AF=0.636;AN=2;DP=1708;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,16:55:99:548,0,2448:16,23,5,11
chr1	28268835	.	A	C	722.29	PASS	AC=1;AF=0.756;AN=2;DP=2116;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,16:57:99:548,0,2448:17,24,5,11
chr1	28282819	.	T	C	2643.43	PASS	AC=2;AF=0.955;AN=2;DP=5526;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3756,342,0:0,0,47,67
chr1	28285534	.	T	C	4698.08	PASS	AC=2;AF=0.955;AN=2;DP=8355;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5711,545,0:0,0,110,72
chr1	28285632	.	A	T	8723.34	PASS	AC=2;AF=0.955;AN=2;DP=14084;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,272:272:99:7807,815,0:0,0,123,149
chr1	28290231	.	C	G	1293.23	PASS	AC=1;AF=0.943;AN=2;DP=2323;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,32:54:99:932,0,596:8,14,10,22
chr1	28298295	.	C	T	99.15	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.742;QD=14.16;ReadPosRankSum=0.742;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:21:127,0,21:1,0,3,3
chr1	28298563	.	C	T	394.57	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=1.455;FractionInformativeReads=1;MQ=60;MQRankSum=0.913;QD=13.15;ReadPosRankSum=-0.995;SOR=1.041;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:423,0,344:7,8,9,6
chr1	28298951	.	C	T	1601.32	PASS	AC=1;AF=0.545;AN=2;DP=1165;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant24-variant27-variant29-variant32-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,27:42:99:754,0,377:10,5,16,11
chr1	28300079	.	T	A	608.24	PASS	AC=1;AF=0.633;AN=2;DP=1285;MQ=60;set=variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:396,0,613:10,14,7,9
chr1	28300770	.	CAGAG	CAG,C,CAGAGAG	36.6	PASS	AC=1,0,0;AF=0.357,0.071,0.071;AN=2;DP=124;MQ=60;set=variant12-variant17-variant29-variant33-variant36-variant41-variant44	GT:DP:GQ:SB	0/1:13:99:3,5,1,4
chr1	28303825	.	T	C	816.65	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.36;QD=9.18;ReadPosRankSum=1.493;SOR=0.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,39:89:99:845,0,1208:26,24,21,18
chr1	28303840	.	G	A	848.8	PASS	AC=1;AF=0.5;AN=2;DP=92;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.377;QD=9.23;ReadPosRankSum=1.634;SOR=0.702;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,41:92:99:877,0,1267:26,25,21,20
chr1	28304785	.	T	C	205.43	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.466;QD=18.68;ReadPosRankSum=0.717;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:234,0,196:5,0,6,0
chr1	28330722	.	G	C	1003	PASS	AC=1;AF=0.5;AN=2;DP=106;FS=2.526;FractionInformativeReads=1;MQ=60;MQRankSum=-1.679;QD=9.46;ReadPosRankSum=0.56;SOR=0.98;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,47:106:99:1031,0,1464:30,29,27,20
chr1	28331013	.	G	A	205.55	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.424;QD=10.28;ReadPosRankSum=-1.196;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:234,0,420:1,11,1,7
chr1	28369213	.	TA	T	894.07	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=5.455;FractionInformativeReads=1;MQ=60;MQRankSum=0.877;QD=13.97;ReadPosRankSum=0.526;SOR=1.569;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,35:64:99:931,0,735:12,17,9,26
chr1	28369234	.	C	T	870.85	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.775;QD=15.01;ReadPosRankSum=0.203;SOR=0.687;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:899,0,790:6,21,7,24
chr1	28369279	.	G	A	1049.83	PASS	AC=1;AF=0.694;AN=2;DP=787;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:359,0,499:0,13,2,10
chr1	28415018	.	T	C	289.75	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:395,0,457:11,8,10,8
chr1	28422847	.	C	T	5050.94	PASS	AC=1;AF=0.694;AN=2;DP=6538;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,80:185:99:1955,0,2875:59,46,40,40
chr1	28422967	.	C	CT	1525.75	PASS	AC=1;AF=0.531;AN=2;DP=2799;set=variant2-variant4-variant5-variant8-variant9-variant11-variant14-variant20-variant21-variant24-variant26-variant35-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,57:139:99:1066,0,1820:31,51,26,31
chr1	28474955	.	G	A	236.03	PASS	AC=1;AF=0.5;AN=2;DP=58;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:264,0,561:7,13,4,7
chr1	28475545	.	C	A	783.41	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0.949;FractionInformativeReads=1;MQ=60;MQRankSum=1.141;QD=12.44;ReadPosRankSum=0.159;SOR=0.841;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,35:63:99:812,0,619:15,13,20,15
chr1	28477694	.	CT	C,CTT	103.75	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=34;MQ=60;set=variant18-variant41	GT:DP:GQ:SB	0/2:9:72:0,5,0,4
chr1	28503277	.	C	G	547.59	PASS	AC=1;AF=0.5;AN=2;DP=104;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:745,0,874:15,17,14,19
chr1	28520161	.	C	T	177.99	PASS	AC=1;AF=0.611;AN=2;DP=469;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:151,0,221:5,4,5,2
chr1	28527011	.	A	G	830.33	PASS	AC=1;AF=0.607;AN=2;DP=2416;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,44:81:99:1069,0,781:18,19,23,21
chr1	28535022	.	G	A	264.85	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.76;QD=13.24;ReadPosRankSum=-0.152;SOR=0.608;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:293,0,226:3,6,4,7
chr1	28555426	.	G	A	160.39	PASS	AC=1;AF=0.636;AN=2;DP=251;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant10-variant13-variant15-variant16-variant20-variant23-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:195,0,172:5,0,5,0
chr1	28559574	.	C	G	565.05	PASS	AC=1;AF=0.658;AN=2;DP=1772;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant8-variant10-variant13-variant20-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,53:107:99:1337,0,1413:19,35,22,31
chr1	28559694	.	A	G	65.21	PASS	AC=1;AF=0.65;AN=2;DP=380;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant8-variant10-variant13-variant20-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:424,0,347:2,9,2,11
chr1	28562540	.	C	A	1075.25	PASS	AC=1;AF=0.65;AN=2;DP=2426;MQ=60;set=variant-variant5-variant7-variant8-variant10-variant13-variant20-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,84:157:99:2038,0,1763:44,29,52,32
chr1	28562676	.	A	G	3333.86	PASS	AC=1;AF=0.65;AN=2;DP=5013;MQ=60;set=variant-variant5-variant7-variant8-variant10-variant13-variant20-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,151:293:99:4020,0,3458:82,60,81,70
chr1	28564252	.	A	G	978.19	PASS	AC=1;AF=0.607;AN=2;DP=2109;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,38:73:99:1081,0,962:20,15,23,15
chr1	28564279	.	A	G	1179.56	PASS	AC=1;AF=0.65;AN=2;DP=1679;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant8-variant10-variant13-variant20-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:1139,0,1258:25,16,22,19
chr1	28573293	.	G	GA	178.93	PASS	AC=1;AF=0.65;AN=2;DP=1129;MQ=60;set=variant-variant5-variant7-variant8-variant10-variant13-variant20-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,24:43:99:504,0,394:5,14,9,15
chr1	28598020	.	T	C	362.45	PASS	AC=1;AF=0.611;AN=2;DP=490;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:143,0,198:4,2,4,0
chr1	28598800	.	C	T	740.11	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=1.027;FractionInformativeReads=1;MQ=60;MQRankSum=0.629;QD=13.22;ReadPosRankSum=2.475;SOR=0.54;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,34:56:99:768,0,505:12,10,17,17
chr1	28823204	.	T	A	1373.4	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.058;QD=16.16;ReadPosRankSum=2.993;SOR=0.676;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,49:85:99:1402,0,1064:13,23,18,31
chr1	28824507	.	CA	C,CAA,CAAA	36.62	PASS	AC=1,0,0;AF=0.407,0.056,0.037;AN=2;DP=971;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-variant6-variant7-variant9-filterInvariant10-filterInvariant12-variant15-filterInvariant17-variant21-variant22-variant23-variant25-variant26-variant29-filterInvariant31-variant33-filterInvariant34-filterInvariant36-filterInvariant37-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:26:99:17,2,6,1
chr1	28832556	.	C	T	823.96	PASS	AC=1;AF=0.5;AN=2;DP=153;FS=0;FractionInformativeReads=1;MQ=60;set=variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,41:76:99:937,0,781:17,18,21,20
chr1	28861636	.	G	A	727.96	PASS	AC=1;AF=0.545;AN=2;DP=2796;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant16-variant22-variant24-variant25-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,93:152:99:2560,0,1687:35,24,51,42
chr1	28863075	.	A	G	556.91	PASS	AC=1;AF=0.545;AN=2;DP=1078;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant16-variant22-variant24-variant25-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:652,0,873:12,21,10,16
chr1	28865168	.	TG	T	520.68	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=0;FractionInformativeReads=0.929;MQ=60;MQRankSum=0.592;QD=12.4;ReadPosRankSum=-0.072;SOR=0.741;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,15:39:99:558,0,2781:14,10,9,6
chr1	28865170	.	TGTACATC	T	514.66	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=0;FractionInformativeReads=0.976;MQ=60;MQRankSum=-1.746;QD=12.25;ReadPosRankSum=0.392;SOR=0.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,15:41:99:552,0,2963:15,11,9,6
chr1	28865710	.	A	G	2970.08	PASS	AC=1;AF=0.563;AN=2;DP=3904;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant22-variant24-variant25-variant29-variant30-variant31-variant32-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,77:151:99:1732,0,1708:34,40,33,44
chr1	28865812	.	A	AT	606.24	PASS	AC=1;AF=0.523;AN=2;DP=1601;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant16-variant22-variant24-variant25-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:454,0,518:5,20,6,17
chr1	28887031	.	A	G	98.72	PASS	AC=1;AF=0.58;AN=2;DP=354;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:196,0,113:1,2,5,0
chr1	28904895	.	G	GACTT	490.29	PASS	AC=1;AF=0.543;AN=2;DP=659;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant16-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:580,0,1499:10,17,7,9
chr1	28918992	.	C	G	580.97	PASS	AC=1;AF=0.619;AN=2;DP=896;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant16-variant25-variant29-variant30-variant31-variant32-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,32:47:99:823,0,372:7,8,18,14
chr1	28919062	.	G	A	1169.12	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=0.848;FractionInformativeReads=1;MQ=60;MQRankSum=-0.312;QD=14.8;ReadPosRankSum=-0.728;SOR=0.829;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,45:79:99:1197,0,747:17,17,24,21
chr1	28931625	.	T	G	517.17	PASS	AC=1;AF=0.595;AN=2;DP=872;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant16-variant25-variant29-variant30-variant31-variant32-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:576,0,434:12,4,11,12
chr1	28969314	.	A	G	2749.76	PASS	AC=2;AF=1;AN=2;DP=5094;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4305,428,0:0,0,85,58
chr1	29016715	.	GT	GTTT,GTT,G	71.38	PASS	AC=1,0,0;AF=0.125,0.275,0.125;AN=2;DP=1093;set=filterInvariant-filterInvariant4-variant5-variant8-variant9-filterInvariant10-variant11-variant14-filterInvariant16-variant19-variant22-filterInvariant24-variant25-filterInvariant26-filterInvariant28-variant32-filterInvariant33-filterInvariant35-filterInvariant38-filterInvariant41	GT:DP:GQ:SB	0/1:28:99:5,13,7,3
chr1	29043253	.	TG	T,TGG	2116.51	PASS	AC=2,0;AF=0.667,0.028;AN=2;DP=3797;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:104:99:2,0,72,30
chr1	29043697	.	G	GT	39.7	PASS	AC=1;AF=0.537;AN=2;DP=715;set=filterInvariant3-variant4-filterInvariant5-variant7-filterInvariant9-filterInvariant11-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:78:78,0,255:2,13,0,6
chr1	29063236	.	G	A	680.25	PASS	AC=1;AF=0.58;AN=2;DP=1054;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:555,0,608:13,11,12,11
chr1	29063559	.	A	C	4158.68	PASS	AC=2;AF=0.989;AN=2;DP=5445;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3448,340,0:0,0,51,63
chr1	29070609	.	A	AG	94.26	PASS	AC=1;AF=0.591;AN=2;DP=280;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant17-variant18-variant19-variant20-variant21-variant23-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:132,0,212:1,5,0,4
chr1	29138975	.	G	T	1492.59	PASS	AC=2;AF=0.875;AN=2;DP=5370;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,123:124:99:3903,362,0:1,0,81,42
chr1	29139140	.	C	G	2867.11	PASS	AC=1;AF=0.5;AN=2;DP=5791;MQ=60;set=variant-variant6-variant11-variant13-variant14-variant16-variant19-variant21-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,114:242:99:2789,0,3235:55,73,52,62
chr1	29139202	.	G	T	1939.83	PASS	AC=1;AF=0.5;AN=2;DP=714;FractionInformativeReads=1;MQ=60;set=variant14-variant29-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,79:148:99:2065,0,1833:26,43,31,48
chr1	29139328	.	CG	C,CGGG	31.96	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=98;MQ=60;set=filterInvariant28-variant41	GT:DP:GQ:SB	0/2:42:99:12,18,4,8
chr1	29189597	.	C	T	3214.03	PASS	AC=1;AF=0.676;AN=2;DP=12381;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:191,191:382:99:4532,0,4479:103,88,99,92
chr1	29190138	.	G	A	538.22	PASS	AC=1;AF=0.621;AN=2;DP=1794;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,34:71:99:794,0,831:16,21,14,20
chr1	29213316	.	A	C,T	150.89	PASS	AC=1,0;AF=0.769,0.013;AN=2;DP=776;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:22:99:7,4,8,3
chr1	29220178	.	G	A	561.61	PASS	AC=1;AF=0.725;AN=2;DP=1874;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,18:47:99:377,0,737:18,11,10,8
chr1	29220270	.	A	C	1485.99	PASS	AC=1;AF=0.725;AN=2;DP=4302;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,44:97:99:1070,0,1249:28,25,26,18
chr1	29345009	.	C	CTT	1348.62	PASS	AC=2;AF=0.875;AN=2;DP=1360;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1105,75,0:0,0,6,19
chr1	29345027	.	T	G	349.49	PASS	AC=2;AF=0.786;AN=2;DP=831;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:499,42,0:0,0,4,10
chr1	29439016	.	T	A	1993.81	PASS	AC=1;AF=0.621;AN=2;DP=4819;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant10-variant13-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,77:137:99:1848,0,1410:24,36,32,45
chr1	29443675	.	T	C	3071	PASS	AC=2;AF=0.756;AN=2;DP=3523;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2805,243,0:0,0,30,51
chr1	29443723	.	A	G	2433.82	PASS	AC=2;AF=0.802;AN=2;DP=3682;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2547,207,0:0,0,31,38
chr1	29445227	.	T	C	739.07	PASS	AC=1;AF=0.538;AN=2;DP=747;MQ=60;set=variant3-variant4-variant6-variant15-variant17-variant21-variant23-variant28-variant30-variant35-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,23:54:99:538,0,959:13,18,8,15
chr1	29445514	.	C	A	348.87	PASS	AC=2;AF=0.703;AN=2;DP=2233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1693,156,0:0,0,29,23
chr1	29446332	.	AT	A	2770.69	PASS	AC=2;AF=0.774;AN=2;DP=4149;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2535,253,0:0,0,50,34
chr1	29446811	.	A	G	1791.3	PASS	AC=2;AF=0.774;AN=2;DP=3199;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2683,231,0:0,0,32,45
chr1	29448488	.	G	T	561.97	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=2.503;FractionInformativeReads=1;MQ=60;MQRankSum=-0.649;QD=9.69;ReadPosRankSum=2.62;SOR=1.071;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,22:58:99:590,0,988:11,25,5,17
chr1	29450284	.	CGAGG	C,CGAGGGAGG	1036.72	PASS	AC=2,0;AF=0.756,0.035;AN=2;DP=1205;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:22:66:0,0,9,13
chr1	29474134	.	A	C	70.68	PASS	AC=2;AF=0.885;AN=2;DP=167;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:189,18,0:0,0,3,3
chr1	29475341	.	C	T	911.79	PASS	AC=1;AF=0.695;AN=2;DP=1442;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:537,0,787:12,12,8,13
chr1	29475394	.	C	G	1227.74	PASS	AC=1;AF=0.695;AN=2;DP=1854;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:688,0,786:15,15,17,9
chr1	29475648	.	T	G	3770.6	PASS	AC=2;AF=0.814;AN=2;DP=4790;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3510,332,0:0,0,44,67
chr1	29508083	.	C	T	1991.59	PASS	AC=1;AF=0.5;AN=2;DP=169;FS=0.591;FractionInformativeReads=1;MQ=60;MQRankSum=-0.781;QD=11.78;ReadPosRankSum=3.451;SOR=0.793;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:86,83:169:99:2020,0,2227:54,32,54,29
chr1	29508374	.	A	G	1350.79	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.862;QD=13.24;ReadPosRankSum=1.143;SOR=0.65;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,54:102:99:1379,0,1246:19,29,22,32
chr1	29519778	.	T	G	2197.51	PASS	AC=2;AF=0.814;AN=2;DP=3741;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2526,234,0:0,0,47,31
chr1	29522384	.	G	A	766.86	PASS	AC=1;AF=0.5;AN=2;DP=302;FractionInformativeReads=1;MQ=60;set=variant21-variant23-variant24-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,13:36:99:395,0,638:15,8,11,2
chr1	29529699	.	T	C	2043.81	PASS	AC=2;AF=0.826;AN=2;DP=5634;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4109,426,0:0,0,76,66
chr1	29533001	.	C	A	80.93	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=2.808;FractionInformativeReads=1;MQ=60;MQRankSum=1.307;QD=8.99;ReadPosRankSum=-1.159;SOR=0.148;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:109,0,160:4,1,2,2
chr1	29542435	.	C	G	1934.37	PASS	AC=2;AF=0.943;AN=2;DP=3296;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2995,287,0:0,0,63,33
chr1	29542637	.	A	G	3414.79	PASS	AC=2;AF=0.814;AN=2;DP=7207;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,189:190:99:5756,539,0:1,0,83,106
chr1	29542926	.	A	T	372.99	PASS	AC=2;AF=0.821;AN=2;DP=504;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:781,54,0:0,0,17,1
chr1	29543404	.	T	C	438.1	PASS	AC=1;AF=0.5;AN=2;DP=121;FractionInformativeReads=1;MQ=60;set=variant21-variant23-variant24-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,5:22:99:132,0,585:3,14,0,5
chr1	29557224	.	C	T	4152.55	PASS	AC=2;AF=0.762;AN=2;DP=8714;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,208:208:99:6464,621,0:0,0,118,90
chr1	29563015	.	G	C	236.5	PASS	AC=2;AF=1;AN=2;DP=909;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:760,75,0:0,0,14,11
chr1	29563411	.	G	A	2952.64	PASS	AC=1;AF=0.5;AN=2;DP=1101;FractionInformativeReads=1;MQ=60;set=variant21-variant23-variant24-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,94:155:99:2540,0,1545:21,40,34,60
chr1	29616318	.	C	A	1493.17	PASS	AC=1;AF=0.5;AN=2;DP=2939;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant20-variant22-variant26-variant27-variant33-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,96:184:99:2248,0,2247:33,55,39,57
chr1	29631236	.	C	CTA	1225.24	PASS	AC=1;AF=0.603;AN=2;DP=6590;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,86:185:99:3410,0,3914:45,54,43,43
chr1	29675098	.	CTTTCTT	C	152.55	PASS	AC=1;AF=0.5;AN=2;DP=80;MQ=60;set=variant13-variant18-variant21-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,9:10:49:362,0,49:0,1,4,5
chr1	29696060	.	T	C	2604.54	PASS	AC=1;AF=0.686;AN=2;DP=5392;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,75:138:99:1796,0,1535:39,24,44,31
chr1	29842261	.	A	T	637.02	PASS	AC=2;AF=0.989;AN=2;DP=1318;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,35:37:59:1076,59,0:2,0,23,12
chr1	29842354	.	C	CT	1571.25	PASS	AC=1;AF=0.563;AN=2;DP=1005;set=variant2-variant8-variant9-variant10-variant13-variant20-variant21-variant22-variant24-variant25-variant32-variant33-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,29:61:99:521,0,648:12,20,12,17
chr1	29843392	.	T	C	1864.07	PASS	AC=1;AF=0.563;AN=2;DP=1129;set=variant2-variant8-variant9-variant10-variant13-variant20-variant21-variant22-variant24-variant25-variant32-variant33-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,33:83:99:733,0,1321:19,31,15,18
chr1	29843442	.	T	TCTTCCTCCTTCTTCCTTCTCCTTCTCCTC	712.96	PASS	AC=1;AF=0.563;AN=2;DP=681;MQ=60;set=variant2-variant8-variant9-variant10-variant13-variant20-variant21-variant22-variant24-variant25-variant32-variant33-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:513,0,742:0,13,3,8
chr1	29845223	.	C	CTCT	1020.01	PASS	AC=1;AF=0.567;AN=2;DP=529;set=variant2-variant8-variant9-variant10-variant13-variant20-variant21-variant22-variant24-variant32-variant33-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:570,0,486:2,11,3,12
chr1	31184218	.	C	A	1185.53	PASS	AC=1;AF=0.667;AN=2;DP=2467;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,38:95:99:917,0,1467:27,30,20,18
chr1	31184368	.	G	A	565.45	PASS	AC=1;AF=0.667;AN=2;DP=1390;FractionInformativeReads=1;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:904,0,831:14,15,15,17
chr1	31184529	.	G	A	834.14	PASS	AC=1;AF=0.667;AN=2;DP=1976;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,32:73:99:721,0,956:19,22,13,19
chr1	31184549	.	G	A	1064.38	PASS	AC=1;AF=0.5;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant28-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:1082,0,1418:14,17,10,18
chr1	31184552	.	C	T	809.58	PASS	AC=1;AF=0.667;AN=2;DP=1805;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:1082,0,1418:14,17,10,18
chr1	31184763	.	G	A	1321.99	PASS	AC=1;AF=0.667;AN=2;DP=2054;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,39:87:99:1484,0,1771:31,17,26,13
chr1	31184779	.	T	C	1550.17	PASS	AC=1;AF=0.667;AN=2;DP=2378;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,41:88:99:1491,0,1777:30,17,27,14
chr1	31184857	.	T	G	2452.68	PASS	AC=1;AF=0.667;AN=2;DP=3500;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,65:130:99:2415,0,2505:37,28,32,33
chr1	31184878	.	A	G	2409.9	PASS	AC=1;AF=0.667;AN=2;DP=3533;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,66:132:99:2490,0,2553:33,33,28,38
chr1	31185106	.	C	T	669.24	PASS	AC=1;AF=0.667;AN=2;DP=1651;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:698,0,816:18,16,15,12
chr1	31185125	.	G	A	622.21	PASS	AC=1;AF=0.667;AN=2;DP=1717;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:697,0,711:15,14,14,13
chr1	31185551	.	TC	T	825.57	PASS	AC=1;AF=0.667;AN=2;DP=2430;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,43:93:99:1035,0,1238:26,24,20,23
chr1	31186094	.	T	TA	2594.34	PASS	AC=1;AF=0.65;AN=2;DP=3326;MQ=60;set=variant-variant7-variant9-variant11-variant13-variant14-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,75:166:99:1863,0,2329:47,44,41,34
chr1	31186222	.	G	A	1399.21	PASS	AC=1;AF=0.5;AN=2;DP=118;FS=3.325;FractionInformativeReads=1;MQ=60;MQRankSum=-1.148;QD=11.86;ReadPosRankSum=0.975;SOR=0.885;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,54:118:99:1427,0,1572:33,31,24,30
chr1	31186224	.	GCACA	GCA,G	1105.4	PASS	AC=1,0;AF=0.527,0.054;AN=2;DP=4066;set=variant-filterInvariant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant32-variant33-variant34-variant35-variant36-filterInvariant38-variant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:92:76:36,46,6,4
chr1	31186254	.	A	G	1158.03	PASS	AC=1;AF=0.667;AN=2;DP=2493;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,47:98:99:1275,0,1329:21,30,24,23
chr1	31188089	.	C	T	2254.6	PASS	AC=1;AF=0.65;AN=2;DP=3928;MQ=60;set=variant-variant7-variant9-variant11-variant13-variant14-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,93:181:99:2319,0,2194:44,44,41,52
chr1	31188901	.	A	G	1179.06	PASS	AC=1;AF=0.667;AN=2;DP=4075;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,85:174:99:2106,0,2040:42,47,41,44
chr1	31189235	.	G	A	486.07	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.412;QD=13.5;ReadPosRankSum=-0.475;SOR=0.864;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:514,0,522:4,15,3,14
chr1	31191516	.	G	C	291.04	PASS	AC=1;AF=0.65;AN=2;DP=537;MQ=60;set=variant-variant7-variant9-variant11-variant13-variant14-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:387,0,393:7,6,7,6
chr1	31192128	.	C	T	415.39	PASS	AC=1;AF=0.5;AN=2;DP=222;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant28-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:528,0,528:3,14,5,13
chr1	31196255	.	G	A	500.96	PASS	AC=1;AF=0.648;AN=2;DP=983;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant15-variant16-variant17-variant20-variant21-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:656,0,694:15,7,18,7
chr1	31205395	.	C	T	461	PASS	AC=1;AF=0.5;AN=2;DP=110;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:850,0,707:14,13,18,14
chr1	31205796	.	T	C	972.05	PASS	AC=1;AF=0.661;AN=2;DP=3155;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,49:113:99:1226,0,1735:34,30,27,22
chr1	31206376	.	CACCA	C	4091	PASS	AC=1;AF=0.5;AN=2;DP=488;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:150,127:277:99:4842,0,7448:80,70,68,59
chr1	31206806	.	T	C	1523.85	PASS	AC=1;AF=0.676;AN=2;DP=3571;MQ=60;set=variant-variant7-variant9-variant11-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:101,98:199:99:2389,0,2455:44,57,44,54
chr1	31206957	.	T	C	171.09	PASS	AC=1;AF=0.676;AN=2;DP=460;MQ=60;set=variant-variant7-variant9-variant11-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:463,0,386:1,10,3,11
chr1	31207781	.	C	T	267.74	PASS	AC=1;AF=0.743;AN=2;DP=788;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:263,0,193:6,2,6,1
chr1	31214369	.	G	T	344.71	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=3.307;FractionInformativeReads=1;MQ=60;MQRankSum=0.529;QD=10.77;ReadPosRankSum=-2.794;SOR=0.239;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:373,0,526:12,5,8,7
chr1	31215364	.	T	C	1315.92	PASS	AC=2;AF=0.672;AN=2;DP=3822;MQ=60;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3810,370,0:0,0,73,51
chr1	31230195	.	T	C	274.74	PASS	AC=2;AF=0.721;AN=2;DP=508;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:775,60,0:0,0,14,6
chr1	31230668	.	C	T	952.58	PASS	AC=1;AF=0.531;AN=2;DP=1641;set=variant-variant7-variant9-variant13-variant14-variant16-variant18-variant25-variant28-variant30-variant33-variant34-variant35-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,48:103:99:1079,0,1369:22,33,19,29
chr1	31342403	.	A	AAAAAAC	43.24	PASS	AC=2;AF=0.875;AN=2;DP=17;FS=0;MQ=60;MQRankSum=1.026;ReadPosRankSum=-1.026;set=variant6-variant20-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:16:163,16,0:0,0,4,2
chr1	31342590	.	G	T	566.64	PASS	AC=1;AF=0.567;AN=2;DP=686;MQ=60;set=variant3-variant4-variant7-variant14-variant15-variant16-variant19-variant20-variant23-variant26-variant27-variant28-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:531,0,567:12,10,12,11
chr1	31344250	.	A	G	949.56	PASS	AC=1;AF=0.563;AN=2;DP=1325;MQ=60;set=variant3-variant4-variant7-variant14-variant15-variant16-variant19-variant20-variant23-variant26-variant27-variant28-variant32-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,44:89:99:1280,0,1158:23,22,23,21
chr1	31344952	.	C	T	633.11	PASS	AC=1;AF=0.688;AN=2;DP=2428;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,36:79:99:1039,0,1130:22,21,20,16
chr1	31345747	.	C	T	1089.3	PASS	AC=1;AF=0.533;AN=2;DP=1054;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant14-variant15-variant16-variant19-variant20-variant23-variant26-variant27-variant28-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:776,0,837:18,13,13,15
chr1	31347399	.	C	T	1126.55	PASS	AC=1;AF=0.563;AN=2;DP=1549;MQ=60;set=variant3-variant4-variant7-variant14-variant15-variant16-variant19-variant20-variant23-variant26-variant27-variant28-variant32-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,36:83:99:876,0,1287:17,30,13,23
chr1	31350566	.	T	C	296.34	PASS	AC=2;AF=0.7;AN=2;DP=1692;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:1040,98,0:0,0,20,13
chr1	31405512	.	A	T	113.29	PASS	AC=1;AF=0.55;AN=2;DP=165;MQ=60;set=variant3-variant4-variant11-variant14-variant26-variant27-variant29-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:93:93,0,232:7,0,3,1
chr1	31406286	.	TACACACACACAC	TACACACACAC,TACACACACACACACAC,TACACACAC,TACACACACACACAC,TACACACACACACACACACAC,T,TACACAC,TACACACACACACACACACACACAC	173.04	PASS	AC=0,0,0,1,0,0,0,0;AF=0.306,0.048,0.048,0.113,0.032,0.016,0.032,0.016;AN=2;DP=1152;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant18-variant19-variant20-filterInvariant21-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/4:13:11:1,2,1,9
chr1	31409726	.	CCT	C	766.44	PASS	AC=1;AF=0.542;AN=2;DP=1453;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,39:60:99:1534,0,872:9,12,15,24
chr1	31409898	.	C	T	136.72	PASS	AC=1;AF=0.6;AN=2;DP=33;FS=0;MQ=60;set=variant4-variant13-variant26-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:90:90,0,119:0,3,0,3
chr1	31415040	.	A	T	475.42	PASS	AC=1;AF=0.639;AN=2;DP=171;FractionInformativeReads=1;MQ=60;set=variant3-variant12-variant14-variant15-variant17-variant18-variant23-variant25-variant27-variant28-variant29-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:93:214,0,93:0,3,1,6
chr1	31418119	.	C	T	517.51	PASS	AC=1;AF=0.542;AN=2;DP=778;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,17:42:99:493,0,743:18,7,14,3
chr1	31422799	.	C	T	353.22	PASS	AC=1;AF=0.556;AN=2;DP=315;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant11-variant13-variant25-variant26-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:580,0,672:18,4,15,5
chr1	31426815	.	A	G	454.72	PASS	AC=1;AF=0.574;AN=2;DP=1124;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:833,0,693:4,20,7,22
chr1	31440921	.	G	A	76.67	PASS	AC=2;AF=0.756;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:542,42,0:0,0,12,2
chr1	31445932	.	C	G	558.91	PASS	AC=2;AF=0.621;AN=2;DP=1052;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant30-variant31-variant32-variant34-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:825,84,0:0,0,16,12
chr1	31446069	.	TG	T	535.35	PASS	AC=1;AF=0.542;AN=2;DP=1048;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,26:39:99:985,0,394:5,8,15,11
chr1	31446071	.	T	A	544.38	PASS	AC=1;AF=0.542;AN=2;DP=1037;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,26:39:99:985,0,394:5,8,15,11
chr1	31465631	.	A	G	554.77	PASS	AC=1;AF=0.5;AN=2;DP=228;FractionInformativeReads=1;MQ=60;set=variant17-variant24-variant25-variant27-variant28-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:438,0,583:6,15,2,13
chr1	31478638	.	AAGAGAGAGAG	AAGAG,A,AAG,AAGAGAGAGAGAGAG	806.46	PASS	AC=1,1,0,0;AF=0.605,0.116,0.012,0.012;AN=2;DP=3408;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:59:99:0,0,41,18
chr1	31479005	.	C	T	369	PASS	AC=1;AF=0.542;AN=2;DP=1301;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:586,0,717:9,19,7,16
chr1	31501755	.	T	C	636.97	PASS	AC=1;AF=0.542;AN=2;DP=1051;set=variant-variant2-variant3-variant8-variant9-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:530,0,645:8,17,5,15
chr1	31501827	.	A	G	124.46	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;set=variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:147,0,244:1,6,0,4
chr1	31653733	.	T	C	1357.28	PASS	AC=2;AF=0.849;AN=2;DP=1895;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1284,124,0:0,0,22,20
chr1	31653988	.	A	G	772.88	PASS	AC=2;AF=0.826;AN=2;DP=1889;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,54:55:99:1894,119,0:1,0,28,26
chr1	31654305	.	C	G	1375.67	PASS	AC=2;AF=0.826;AN=2;DP=2886;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2124,198,0:0,0,37,29
chr1	31654940	.	C	T	921.11	PASS	AC=2;AF=0.833;AN=2;DP=1401;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1099,111,0:0,0,11,27
chr1	31660927	.	G	A	691.59	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=1.01;FractionInformativeReads=1;MQ=60;MQRankSum=1.338;QD=11.53;ReadPosRankSum=-2.58;SOR=0.986;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:720,0,722:17,13,19,11
chr1	31732390	.	G	A	6090.03	PASS	AC=2;AF=0.989;AN=2;DP=7980;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,192:194:99:4818,530,0:1,1,122,70
chr1	31732602	.	CAA	C,CA,CAAA	1669.9	PASS	AC=0,2,0;AF=0.209,0.523,0.012;AN=2;DP=3715;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:43:79:1,1,18,23
chr1	31732892	.	G	A	2369.46	PASS	AC=1;AF=0.5;AN=2;DP=1728;MQ=60;set=variant4-variant6-variant13-variant18-variant20-variant21-variant22-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,61:135:99:1568,0,2086:30,44,31,30
chr1	31733721	.	A	AAAG	359.21	PASS	AC=1;AF=0.833;AN=2;DP=545;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:356,0,122:5,0,7,2
chr1	31733782	.	T	A	1562.19	PASS	AC=1;AF=0.824;AN=2;DP=2133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,14:37:99:379,0,553:14,9,11,3
chr1	31733926	.	A	G	1475.35	PASS	AC=2;AF=0.837;AN=2;DP=4773;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2871,279,0:0,0,43,50
chr1	31740668	.	C	T	2034.3	PASS	AC=1;AF=0.833;AN=2;DP=1990;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,32:51:99:858,0,440:12,7,20,12
chr1	31744168	.	G	A	787.66	PASS	AC=1;AF=0.833;AN=2;DP=987;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:311,0,478:10,9,9,3
chr1	31744505	.	A	AT	159.63	PASS	AC=2;AF=0.878;AN=2;DP=595;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,15:16:19:373,19,0:0,1,3,12
chr1	31754367	.	T	C	1592.52	PASS	AC=1;AF=0.5;AN=2;DP=1597;FractionInformativeReads=1;set=variant4-variant6-variant13-variant18-variant20-variant21-variant22-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,69:143:99:1681,0,1795:37,37,28,41
chr1	31754511	.	G	C	991.02	PASS	AC=1;AF=0.824;AN=2;DP=914;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:475,0,217:1,6,1,11
chr1	31761989	.	G	A	1529.35	PASS	AC=2;AF=1;AN=2;DP=2885;FS=0;MQ=60;MQRankSum=1.175;ReadPosRankSum=-0.212;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1964,186,0:0,0,41,21
chr1	31762374	.	C	T	2043.82	PASS	AC=2;AF=0.837;AN=2;DP=2876;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2105,201,0:0,0,32,35
chr1	31764693	.	G	A	1245.9	PASS	AC=1;AF=0.833;AN=2;DP=975;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:420,0,327:9,0,12,2
chr1	31764713	.	C	CAAG	2086.43	PASS	AC=1;AF=0.824;AN=2;DP=1427;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:699,0,688:14,2,14,3
chr1	31764930	.	T	C	1590.86	PASS	AC=2;AF=1;AN=2;DP=2245;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1276,108,0:0,0,7,29
chr1	31765968	.	C	T	2075.56	PASS	AC=1;AF=0.833;AN=2;DP=1804;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,34:59:99:915,0,594:15,10,20,14
chr1	31792141	.	A	G	707.71	PASS	AC=1;AF=0.838;AN=2;DP=819;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:387,0,387:3,9,2,10
chr1	31821932	.	TA	T	278.57	PASS	AC=1;AF=0.5;AN=2;DP=334;MQ=60;set=variant4-variant6-variant13-variant18-variant20-variant21-variant22-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,24:35:99:784,0,306:2,9,6,18
chr1	31837089	.	T	C	2190.97	PASS	AC=1;AF=0.5;AN=2;DP=1194;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant18-variant20-variant21-variant22-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,54:111:99:1351,0,1593:23,34,26,28
chr1	31837320	.	T	C	1953.24	PASS	AC=1;AF=0.811;AN=2;DP=2890;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:1060,0,954:22,13,18,19
chr1	31837632	.	C	T	1053.01	PASS	AC=1;AF=0.5;AN=2;DP=545;FractionInformativeReads=1;MQ=60;set=variant4-variant20-variant22-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,56:99:99:1545,0,1216:23,20,32,24
chr1	31837683	.	C	A	1247.94	PASS	AC=1;AF=0.5;AN=2;DP=766;MQ=60;set=variant4-variant20-variant22-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,69:132:99:1820,0,1773:31,32,41,28
chr1	31838551	.	TAA	TA,TAAA,T	121.43	PASS	AC=0,1,0;AF=0.306,0.181,0.014;AN=2;DP=1051;set=variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-filterInvariant29-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:15:84:6,3,6,0
chr1	31840426	.	C	G	1268.5	PASS	AC=1;AF=0.811;AN=2;DP=1510;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:765,0,843:0,22,5,20
chr1	31882330	.	T	G	1606.86	PASS	AC=2;AF=1;AN=2;DP=1404;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:810,63,0:0,0,18,3
chr1	31882582	.	G	GGCCTCA	3609.73	PASS	AC=1;AF=0.688;AN=2;DP=2016;MQ=60;set=variant3-variant4-variant6-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant30-variant32-variant34-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,37:83:99:1534,0,3512:21,25,18,19
chr1	31883295	.	T	C	2306.77	PASS	AC=1;AF=0.688;AN=2;DP=1329;MQ=60;set=variant3-variant4-variant6-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant30-variant32-variant34-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:598,0,705:14,15,13,12
chr1	31885859	.	A	G	291.9	PASS	AC=1;AF=0.75;AN=2;DP=175;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant10-variant13-filterInvariant14-variant18-variant19-variant20-variant21-variant22-variant23-variant30-variant32-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:106,0,199:2,5,2,2
chr1	31886564	.	C	G	526.47	PASS	AC=1;AF=0.696;AN=2;DP=331;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant30-variant32-variant34-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:146,0,180:4,1,4,0
chr1	31886833	.	T	C	4918.01	PASS	AC=1;AF=0.688;AN=2;DP=3367;MQ=60;set=variant3-variant4-variant6-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant30-variant32-variant34-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,76:141:99:1831,0,1790:29,36,40,36
chr1	31897493	.	A	G	2264.94	PASS	AC=2;AF=1;AN=2;DP=2939;FS=0;MQ=60;MQRankSum=-0.027;ReadPosRankSum=0.247;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2239,201,0:0,0,48,19
chr1	31898132	.	T	C	1242.86	PASS	AC=1;AF=0.794;AN=2;DP=3658;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,59:144:99:1318,0,1875:45,40,35,24
chr1	31898162	.	C	T	1358.92	PASS	AC=1;AF=0.794;AN=2;DP=4633;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,72:164:99:1690,0,2167:45,47,40,32
chr1	31898234	.	T	C	1660.16	PASS	AC=1;AF=0.794;AN=2;DP=4574;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,83:157:99:2203,0,1920:29,45,36,47
chr1	31898279	.	A	C	1194.2	PASS	AC=1;AF=0.794;AN=2;DP=3226;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,57:98:99:1506,0,950:18,23,25,32
chr1	31898463	.	C	T	470.35	PASS	AC=1;AF=0.794;AN=2;DP=810;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,20:28:99:663,0,178:3,5,12,8
chr1	31898536	.	C	T	1323.18	PASS	AC=1;AF=0.794;AN=2;DP=1732;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:555,0,393:9,6,12,5
chr1	31899684	.	A	T	382.42	PASS	AC=2;AF=1;AN=2;DP=1838;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1166,113,0:0,0,12,26
chr1	31899704	.	C	T	281.14	PASS	AC=1;AF=0.864;AN=2;DP=1335;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:415,0,412:5,11,2,10
chr1	31902279	.	G	A	2241.85	PASS	AC=1;AF=0.5;AN=2;DP=1013;MQ=60;set=variant3-variant4-variant20-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,81:150:99:1936,0,1522:37,32,43,38
chr1	31902418	.	A	G	3880.27	PASS	AC=1;AF=0.727;AN=2;DP=2005;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant10-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant30-variant32-variant34-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,52:106:99:1310,0,1303:23,31,20,32
chr1	31905889	.	A	ACAG	6543.73	PASS	AC=2;AF=0.907;AN=2;DP=7555;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,144:145:99:6481,397,0:1,0,86,58
chr1	31906882	.	A	G	2731.08	PASS	AC=2;AF=0.943;AN=2;DP=5034;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3199,296,0:0,0,49,50
chr1	31907102	.	A	G	1558.64	PASS	AC=1;AF=0.909;AN=2;DP=3034;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:744,0,1147:13,25,11,16
chr1	31907457	.	A	C,G	1863.63	PASS	AC=1,1;AF=0.67,0.273;AN=2;DP=2053;MQ=60;set=Intersection	GT:DP:GQ:SB	1/2:47:99:0,0,13,34
chr1	31971684	.	C	G	467.98	PASS	AC=1;AF=0.735;AN=2;DP=785;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:361,0,420:11,3,10,1
chr1	31973122	.	GTGGAGTCTGTC	G	1942.9	PASS	AC=2;AF=0.77;AN=2;DP=3659;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:3610,247,0:0,0,33,49
chr1	31973138	.	T	C	2026.96	PASS	AC=2;AF=0.77;AN=2;DP=3608;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:3725,256,0:0,0,35,47
chr1	31973215	.	G	A	1249.58	PASS	AC=2;AF=0.77;AN=2;DP=3068;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,88:89:99:2859,256,0:0,1,48,40
chr1	31973266	.	G	A	1337.43	PASS	AC=1;AF=0.75;AN=2;DP=2579;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,45:93:99:1010,0,1270:25,23,23,22
chr1	31973348	.	A	C	1429.07	PASS	AC=2;AF=0.77;AN=2;DP=3443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3155,273,0:0,0,45,46
chr1	31973409	.	G	A	1766.36	PASS	AC=2;AF=0.77;AN=2;DP=3885;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2732,250,0:0,0,40,44
chr1	31973440	.	G	A	1964.47	PASS	AC=2;AF=0.77;AN=2;DP=3575;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2603,228,0:0,0,35,41
chr1	31973481	.	C	T	1548.72	PASS	AC=1;AF=0.75;AN=2;DP=2695;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,36:67:99:913,0,848:13,18,16,20
chr1	31973703	.	T	C	247.44	PASS	AC=2;AF=0.75;AN=2;DP=470;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:536,45,0:0,0,5,10
chr1	32042540	.	G	A	239.89	PASS	AC=1;AF=0.618;AN=2;DP=813;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:395,0,469:10,3,10,2
chr1	32044641	.	G	GTTTAATTTCAGTGAGAGCTGGTGTGTCTGTGTGTGTGTGTGTGATGTCTTCAGTTATAA,GTTTAATTTCAGTGAGAGCTGGTGTGTCTATGTGTGTGTGTGTGTGATGTCTTCAGTTATAA,GTTTAATTTCAGTGAGAGCTGTTGTGTCTATGTGTGTGTGTGTGTGATGTCTTCAGTTATAA	1710.94	PASS	AC=0,0,2;AF=0.452,0.238,0.31;AN=2;DP=517;FS=0;MQRankSum=0.474;ReadPosRankSum=0.474;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	3/3:16:64:0,0,8,8
chr1	32084904	.	C	T	3627.23	PASS	AC=1;AF=0.649;AN=2;DP=6067;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,94:191:99:2262,0,2197:49,48,50,44
chr1	32085485	.	G	A	698.09	PASS	AC=1;AF=0.725;AN=2;DP=1909;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:650,0,510:9,11,13,14
chr1	32086912	.	A	C	784.51	PASS	AC=1;AF=0.762;AN=2;DP=1255;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:742,0,452:11,7,19,2
chr1	32092525	.	A	G	1211.83	PASS	AC=1;AF=0.725;AN=2;DP=2952;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,35:77:99:947,0,1039:23,19,15,20
chr1	32092735	.	T	G	3818.38	PASS	AC=1;AF=0.649;AN=2;DP=4726;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,69:137:99:1727,0,1633:34,34,41,28
chr1	32092918	.	T	TTCC	10334.2	PASS	AC=1;AF=0.649;AN=2;DP=7843;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,114:239:99:4360,0,6253:62,63,47,67
chr1	32096265	.	A	G	1132.19	PASS	AC=1;AF=0.649;AN=2;DP=1959;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,32:53:99:849,0,582:12,9,19,13
chr1	32096746	.	T	C	184.75	PASS	AC=1;AF=0.731;AN=2;DP=475;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:54:110,0,54:0,2,1,3
chr1	32100551	.	GA	G	1888.77	PASS	AC=1;AF=0.768;AN=2;DP=2878;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:729,0,824:13,18,9,19
chr1	32118160	.	C	A	5080.92	PASS	AC=1;AF=0.737;AN=2;DP=8785;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:132,94:226:99:1758,0,3424:82,50,56,38
chr1	32119347	.	AACAC	A,AAC,AACACAC	1301.37	PASS	AC=1,0,0;AF=0.615,0.013,0.064;AN=2;DP=1754;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:42:99:13,14,10,5
chr1	32119431	.	T	C	979.49	PASS	AC=1;AF=0.658;AN=2;DP=2100;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,20:58:99:503,0,918:19,19,11,9
chr1	32122164	.	A	G	127.02	PASS	AC=1;AF=0.784;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:157,0,152:1,3,2,3
chr1	32122424	.	TAA	TA,TAAA,T	85.64	PASS	AC=1,0,0;AF=0.452,0.032,0.016;AN=2;DP=664;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant37-variant39-filterInvariant41-variant42-variant43	GT:DP:GQ:SB	0/1:16:71:6,4,6,0
chr1	32131163	.	C	G	4379.47	PASS	AC=1;AF=0.632;AN=2;DP=8171;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,109:218:99:2616,0,2953:47,62,51,58
chr1	32134491	.	C	G	194.63	PASS	AC=1;AF=0.738;AN=2;DP=803;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:212,0,276:3,6,3,4
chr1	32136168	.	G	C,T	4014.62	PASS	AC=1,0;AF=0.693,0.273;AN=2;DP=5182;MQ=60;set=Intersection	GT:DP:GQ:SB	0/1:100:99:26,16,35,23
chr1	32136398	.	G	A	1422.96	PASS	AC=1;AF=0.667;AN=2;DP=1979;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,25:60:99:564,0,887:15,20,10,15
chr1	32140733	.	C	T	2998.67	PASS	AC=1;AF=0.671;AN=2;DP=4603;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,67:107:99:1836,0,1093:20,20,31,36
chr1	32145009	.	C	T	2358.43	PASS	AC=1;AF=0.977;AN=2;DP=4059;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,52:106:99:1367,0,1495:26,28,24,28
chr1	32146425	.	C	T	833.04	PASS	AC=1;AF=0.659;AN=2;DP=1507;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:545,0,613:13,9,11,10
chr1	32148571	.	A	G	1533.83	PASS	AC=2;AF=1;AN=2;DP=4261;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:3810,386,0:0,0,78,51
chr1	32149982	.	A	T	207.09	PASS	AC=1;AF=0.565;AN=2;DP=765;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:424,0,368:8,7,7,11
chr1	32150411	.	C	G	1319.66	PASS	AC=1;AF=0.5;AN=2;DP=420;MQ=60;set=variant6-variant11-variant12-variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,47:97:99:1315,0,1223:29,21,31,16
chr1	32155284	.	T	C	2509.12	PASS	AC=1;AF=0.675;AN=2;DP=5037;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,69:138:99:1797,0,1834:37,32,34,35
chr1	32155463	.	G	A	325.66	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.405;QD=6.03;ReadPosRankSum=-1.922;SOR=0.56;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,13:54:99:354,0,1154:12,29,4,9
chr1	32155929	.	G	A	1571.09	PASS	AC=1;AF=0.632;AN=2;DP=1712;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:654,0,528:11,10,17,9
chr1	32156869	.	A	T	5436.3	PASS	AC=2;AF=1;AN=2;DP=11181;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,272:272:99:8052,813,0:0,0,147,125
chr1	32157248	.	G	T,C	200.75	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=68;FractionInformativeReads=1;MQ=60;set=variant23-variant41	GT:DP:GQ:SB	0/2:41:99:12,18,3,8
chr1	32158374	.	T	C	4550.5	PASS	AC=1;AF=0.726;AN=2;DP=8314;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,97:193:99:2547,0,2667:33,63,33,64
chr1	32158605	.	C	T	189.18	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.378;QD=15.76;ReadPosRankSum=1.073;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:217,0,206:4,2,4,2
chr1	32158858	.	C	T	715.35	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=3.463;FractionInformativeReads=1;MQ=60;MQRankSum=1.028;QD=14.03;ReadPosRankSum=0.783;SOR=0.25;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:744,0,865:3,24,5,19
chr1	32159588	.	A	C	4324.85	PASS	AC=1;AF=0.726;AN=2;DP=7077;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,60:131:99:1639,0,1781:39,32,31,29
chr1	32160918	.	A	G	1287.35	PASS	AC=1;AF=0.738;AN=2;DP=2971;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,45:73:99:1113,0,644:10,18,19,26
chr1	32163438	.	G	A	544.89	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.811;QD=12.11;ReadPosRankSum=-0.171;SOR=0.559;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:573,0,468:12,8,14,11
chr1	32163950	.	G	C	1121.4	PASS	AC=1;AF=0.784;AN=2;DP=1347;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:765,0,987:18,12,13,10
chr1	32164206	.	T	G	2865.37	PASS	AC=1;AF=0.803;AN=2;DP=3847;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,55:99:99:1532,0,1003:18,26,19,36
chr1	32167526	.	G	C	2488.75	PASS	AC=2;AF=1;AN=2;DP=4467;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2600,228,0:0,0,45,31
chr1	32169935	.	A	T	226.57	PASS	AC=1;AF=0.538;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant7-variant11-variant12-variant18-variant19-variant24-variant28-variant29-variant30-variant32-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:91:202,0,91:1,2,3,3
chr1	32193647	.	T	C	2223.2	PASS	AC=1;AF=0.829;AN=2;DP=3373;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,38:88:99:1015,0,1432:30,20,24,14
chr1	32193773	.	G	A	2509.33	PASS	AC=1;AF=0.5;AN=2;DP=191;FS=1.793;FractionInformativeReads=0.995;MQ=60;MQRankSum=-1.356;QD=13.14;ReadPosRankSum=3.205;SOR=0.845;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:83,107:190:99:2538,0,1829:41,42,49,58
chr1	32194404	.	A	AACAC,AACACACACACACACACACAC,AAC,AACACACAC,AACACACACACAC,AACACAC,AACACACACACACACACACACAC,AACACACACACACACACACACACACAC	240.87	PASS	AC=0,0,2,0,0,0,0,0;AF=0.45,0.033,0.267,0.067,0.033,0.067,0.033,0.033;AN=2;DP=445;FS=0;MQRankSum=-0.198;ReadPosRankSum=-0.922;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	3/3:3:8:0,0,0,3
chr1	32196647	.	C	G	1568.08	PASS	AC=1;AF=0.553;AN=2;DP=2484;MQ=60;set=variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant24-variant27-variant28-variant29-variant30-variant32-variant34-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,72:148:99:1643,0,1913:29,47,33,39
chr1	32202408	.	C	T	369.01	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.205;QD=14.19;ReadPosRankSum=0.769;SOR=0.321;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:397,0,456:1,12,2,11
chr1	32203953	.	G	GCCCCAGGCCAGCTACGTGGCCCTGC	790.99	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=3.093;FractionInformativeReads=0.767;MQ=60;MQRankSum=1.459;QD=18.4;ReadPosRankSum=-1.819;SOR=0.293;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:828,0,737:11,6,8,8
chr1	32204063	.	C	G	1248.77	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0.78;FractionInformativeReads=1;MQ=60;MQRankSum=-3.027;QD=13.28;ReadPosRankSum=-0.519;SOR=0.838;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,50:94:99:1277,0,1166:24,20,29,21
chr1	32204160	.	C	T	1866.01	PASS	AC=1;AF=0.5;AN=2;DP=131;FS=1.399;FractionInformativeReads=1;MQ=60;MQRankSum=-0.546;QD=14.24;ReadPosRankSum=-1.484;SOR=0.57;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:53,78:131:99:1894,0,1273:29,24,40,38
chr1	32207581	.	T	G	3172.45	PASS	AC=1;AF=0.553;AN=2;DP=4150;MQ=60;set=variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant24-variant27-variant28-variant29-variant30-variant32-variant34-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,105:212:99:2759,0,2779:44,63,50,55
chr1	32223187	.	T	TG	528.83	PASS	AC=1;AF=0.5;AN=2;DP=319;MQ=60;set=variant9-variant13-variant15-variant16-variant28-variant29-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:364,0,611:9,11,3,10
chr1	32229571	.	G	T	284.58	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,16:41:99:293,0,586:10,15,7,9
chr1	32256086	.	T	C	1780.85	PASS	AC=1;AF=0.854;AN=2;DP=2594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,38:70:99:1034,0,762:19,13,23,15
chr1	32263976	.	C	T	2001.43	PASS	AC=1;AF=0.5;AN=2;DP=168;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.964;QD=11.91;ReadPosRankSum=2.233;SOR=0.654;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:85,83:168:99:2030,0,2110:35,50,35,48
chr1	32264867	.	G	A	173.66	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.466;QD=15.79;ReadPosRankSum=-0.387;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:202,0,154:4,1,5,1
chr1	32265054	.	T	C	1100.32	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=2.137;FractionInformativeReads=1;MQ=60;MQRankSum=1.432;QD=16.42;ReadPosRankSum=-0.033;SOR=1.055;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,43:67:99:1129,0,624:12,12,18,25
chr1	32265253	.	C	G	135.9	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.247;QD=8.49;ReadPosRankSum=0.597;SOR=0.412;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:164,0,275:4,6,3,3
chr1	32265775	.	GA	G	580.33	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=0;FractionInformativeReads=0.945;MQ=60;MQRankSum=0.12;QD=10.55;ReadPosRankSum=0.806;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:618,0,911:11,19,8,14
chr1	32266026	.	A	G	6099.17	PASS	AC=1;AF=0.86;AN=2;DP=9136;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,86:162:99:2075,0,1876:45,31,52,34
chr1	32279629	.	G	A	336.29	PASS	AC=1;AF=0.55;AN=2;DP=2164;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,36:59:99:875,0,493:12,11,21,15
chr1	32280610	.	T	C	1753.14	PASS	AC=2;AF=0.762;AN=2;DP=3585;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2432,221,0:0,0,32,42
chr1	32372356	.	TACAC	TAC,T	47.89	PASS	AC=1,1;AF=0.566,0.118;AN=2;DP=1724;set=filterInvariant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:29:99:0,0,24,5
chr1	32372881	.	C	T	106.13	PASS	AC=1;AF=0.528;AN=2;DP=445;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant20-variant24-variant25-variant26-variant29-variant31-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:252,0,356:9,6,6,5
chr1	32373394	.	G	A	1256.73	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.846;QD=15.33;ReadPosRankSum=1.453;SOR=0.665;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,46:82:99:1285,0,1166:23,13,29,17
chr1	32503706	.	G	C	995.87	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=1.525;FractionInformativeReads=1;MQ=60;MQRankSum=-0.723;QD=9.14;ReadPosRankSum=-1.364;SOR=0.85;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,48:109:99:1024,0,1411:29,32,21,27
chr1	32508523	.	AAAAG	A	2551.62	PASS	AC=1;AF=0.5;AN=2;DP=130;FS=1.413;FractionInformativeReads=1;MQ=60;MQRankSum=-0.989;QD=19.63;ReadPosRankSum=2.682;SOR=0.838;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,69:130:99:2589,0,3179:36,25,43,26
chr1	32622310	.	AG	A	96	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=3.123;FractionInformativeReads=0.929;MQ=60;MQRankSum=0.696;QD=6.86;ReadPosRankSum=1.256;SOR=2.03;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:133,0,232:6,2,5,0
chr1	32638096	.	CTTTT	CTTT,CT,C	605.04	PASS	AC=1,0,0;AF=0.455,0.034,0.011;AN=2;DP=6856;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:126:99:40,43,22,21
chr1	32639057	.	G	C	1216.37	PASS	AC=1;AF=0.533;AN=2;DP=526;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant12-variant16-variant18-variant20-variant26-variant27-variant30-variant31-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:343,0,346:7,7,9,5
chr1	32645476	.	CG	C	662.83	PASS	AC=1;AF=0.5;AN=2;DP=376;MQ=60;set=variant18-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,28:69:99:706,0,1128:16,25,8,20
chr1	32658062	.	G	GGT	456.93	PASS	AC=2;AF=0.671;AN=2;DP=1870;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1907,135,0:0,0,12,33
chr1	32660474	.	G	A	731.79	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=2.074;FractionInformativeReads=0.985;MQ=60;MQRankSum=-0.439;QD=10.92;ReadPosRankSum=0.297;SOR=0.551;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,29:66:99:760,0,930:21,16,14,15
chr1	32671030	.	C	T	802.48	PASS	AC=1;AF=0.5;AN=2;DP=387;MQ=60;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,48:78:99:1492,0,809:11,19,21,27
chr1	32671065	.	A	C	688.5	PASS	AC=1;AF=0.5;AN=2;DP=348;MQ=60;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,42:71:99:1236,0,803:13,16,20,22
chr1	32672784	.	G	C	2170.43	PASS	AC=1;AF=0.5;AN=2;DP=646;MQ=60;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,52:109:99:1973,0,3151:26,31,24,28
chr1	32672785	.	A	T	2170.43	PASS	AC=1;AF=0.5;AN=2;DP=643;MQ=60;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,50:107:99:1973,0,3151:26,31,22,28
chr1	32672908	.	T	G	1729.76	PASS	AC=1;AF=0.5;AN=2;DP=597;MQ=60;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,34:105:99:863,0,1732:36,35,18,16
chr1	32673866	.	G	C	483.15	PASS	AC=1;AF=0.5;AN=2;DP=149;FractionInformativeReads=1;MQ=60;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:329,0,261:5,4,5,7
chr1	32674736	.	C	T	1141.75	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=0.757;FractionInformativeReads=1;MQ=60;MQRankSum=-0.649;QD=11.3;ReadPosRankSum=1.717;SOR=0.854;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:53,48:101:99:1170,0,1336:30,23,29,19
chr1	32682962	.	C	A	933.51	PASS	AC=1;AF=0.5;AN=2;DP=360;FractionInformativeReads=1;MQ=60;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:934,0,945:13,21,16,18
chr1	32687710	.	C	G	182.96	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.278;QD=16.63;ReadPosRankSum=-0.278;SOR=0.33;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:211,0,106:1,3,3,4
chr1	32687777	.	A	G	256.4	PASS	AC=1;AF=0.6;AN=2;DP=62;FractionInformativeReads=1;MQ=60;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:262,0,143:3,2,3,5
chr1	32689521	.	A	G	862.97	PASS	AC=1;AF=0.5;AN=2;DP=224;MQ=60;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:565,0,488:13,7,15,5
chr1	32689857	.	A	G	590.89	PASS	AC=1;AF=0.52;AN=2;DP=1329;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant19-variant20-variant23-variant24-variant25-variant28-variant29-variant31-variant33-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:617,0,601:9,9,8,12
chr1	32691617	.	G	C	153.37	PASS	AC=1;AF=0.5;AN=2;DP=57;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:92:275,0,92:3,0,7,2
chr1	32692168	.	AT	A,ATT	57.97	PASS	AC=1,0;AF=0.482,0.054;AN=2;DP=869;MQ=60;set=variant-filterInvariant4-variant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-variant12-variant14-variant17-variant19-variant20-variant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant31-filterInvariant34-filterInvariant36-variant38-variant39-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:17:21:1,2,2,12
chr1	32694819	.	A	G	389.53	PASS	AC=1;AF=0.5;AN=2;DP=403;FractionInformativeReads=1;MQ=60;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,41:94:99:955,0,1239:26,27,14,27
chr1	32696628	.	A	C	1572.78	PASS	AC=1;AF=0.5;AN=2;DP=753;FractionInformativeReads=1;MQ=60;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,80:160:99:1821,0,1867:41,39,41,39
chr1	32697063	.	T	C	847.76	PASS	AC=1;AF=0.5;AN=2;DP=346;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,42:81:99:1662,0,2151:35,4,27,15
chr1	32697071	.	C	A	852.72	PASS	AC=1;AF=0.5;AN=2;DP=407;set=variant20-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,47:94:99:1771,0,2283:38,9,31,16
chr1	32713199	.	A	G	1464.27	PASS	AC=1;AF=0.5;AN=2;DP=424;MQ=60;set=variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:92,59:151:99:1314,0,2118:46,46,29,30
chr1	32782245	.	T	C	366.07	PASS	AC=1;AF=0.5;AN=2;DP=182;FractionInformativeReads=1;MQ=60;set=variant7-variant12-variant18-variant31-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:531,0,594:15,4,12,4
chr1	32831543	.	C	T	604.22	PASS	AC=1;AF=0.872;AN=2;DP=1578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,25:43:99:688,0,467:11,7,14,11
chr1	32860161	.	T	C	510.01	PASS	AC=2;AF=1;AN=2;DP=1665;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2081,165,0:0,0,9,46
chr1	33065947	.	G	C	6646.82	PASS	AC=2;AF=1;AN=2;DP=7987;FS=0;MQ=60;MQRankSum=0.5;ReadPosRankSum=1.578;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:6569,612,0:0,0,106,98
chr1	33066299	.	C	A	3017.11	PASS	AC=1;AF=0.571;AN=2;DP=1942;MQ=60;set=variant-variant2-variant16-variant33-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:134,135:269:99:3504,0,3798:62,72,70,65
chr1	33066591	.	G	A	3224.76	PASS	AC=1;AF=0.5;AN=2;DP=1239;MQ=60;set=variant-variant4-variant16-variant33-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,90:166:99:2366,0,2080:21,55,26,64
chr1	33066654	.	TA	T	355.15	PASS	AC=1;AF=0.5;AN=2;DP=176;MQ=60;set=variant4-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:138,0,342:2,14,0,8
chr1	33086999	.	CA	C,CAA	191.64	PASS	AC=1,0;AF=0.476,0.024;AN=2;DP=1848;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:31:99:11,6,12,2
chr1	33099798	.	A	G	321.04	PASS	AC=1;AF=0.548;AN=2;DP=465;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant23-variant25-variant26-variant27-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:408,0,499:4,14,2,11
chr1	33116623	.	T	G	103.12	PASS	AC=2;AF=0.952;AN=2;DP=507;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:513,42,0:0,0,10,4
chr1	33117071	.	T	G	2278.51	PASS	AC=2;AF=1;AN=2;DP=4479;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2560,237,0:0,0,30,49
chr1	33127730	.	T	C	661.89	PASS	AC=2;AF=1;AN=2;DP=1013;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:650,63,0:0,0,14,7
chr1	33133968	.	T	C	3710.16	PASS	AC=2;AF=1;AN=2;DP=3568;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2450,249,0:0,0,40,43
chr1	33134038	.	A	G	738.12	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=1.018;FractionInformativeReads=1;MQ=60;MQRankSum=-1.061;QD=13.42;ReadPosRankSum=1.74;SOR=0.856;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:766,0,550:11,13,13,18
chr1	33134774	.	A	C	760.02	PASS	AC=1;AF=0.774;AN=2;DP=3468;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,25:76:99:555,0,1290:24,27,9,16
chr1	33134989	.	A	G	341.76	PASS	AC=2;AF=0.943;AN=2;DP=2056;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1586,152,0:0,0,22,29
chr1	33138516	.	A	C	4661.04	PASS	AC=2;AF=1;AN=2;DP=5344;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4074,377,0:0,0,61,65
chr1	33138605	.	T	C	790	PASS	AC=2;AF=0.955;AN=2;DP=3373;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2180,219,0:0,0,29,44
chr1	33139043	.	C	T,CT	1355.01	PASS	AC=2,0;AF=0.955,0.034;AN=2;DP=1669;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:40:99:0,0,17,23
chr1	33139044	.	T	TC	321.06	PASS	AC=2;AF=0.932;AN=2;DP=1659;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1796,120,0:0,0,17,23
chr1	33146501	.	A	G	1260.66	PASS	AC=2;AF=0.955;AN=2;DP=3823;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2788,273,0:0,0,54,37
chr1	33147143	.	C	T	2546.19	PASS	AC=2;AF=1;AN=2;DP=3499;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2649,224,0:0,0,30,45
chr1	33160878	.	C	T	1197.31	PASS	AC=2;AF=0.955;AN=2;DP=7415;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,177:177:99:5415,531,0:0,0,107,70
chr1	33161212	.	T	C	1306.49	PASS	AC=2;AF=0.955;AN=2;DP=9321;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:5838,552,0:0,0,104,80
chr1	33233323	.	A	G	1596.92	PASS	AC=2;AF=1;AN=2;DP=2309;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2212,179,0:0,0,49,11
chr1	33233625	.	A	T	965.8	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=1.607;FractionInformativeReads=0.991;MQ=60;MQRankSum=-2.754;QD=9.03;ReadPosRankSum=-0.59;SOR=0.541;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,40:106:99:994,0,1808:27,39,18,22
chr1	33233839	.	C	T	239.88	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.322;QD=19.99;ReadPosRankSum=0.107;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,10:12:56:268,0,56:0,2,2,8
chr1	33234136	.	T	C	729.13	PASS	AC=2;AF=1;AN=2;DP=1188;FS=0;MQ=60;MQRankSum=0.8;ReadPosRankSum=0.933;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:961,87,0:0,0,19,10
chr1	33234153	.	G	A	766.61	PASS	AC=1;AF=0.676;AN=2;DP=1197;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,8:31:99:264,0,590:13,10,7,1
chr1	33236554	.	A	C	389.54	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1395;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:75,21:96:99:112,0,1482:22,53,20,1
chr1	33248171	.	A	T	778	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=2.628;FractionInformativeReads=1;MQ=60;MQRankSum=-2.292;QD=16.55;ReadPosRankSum=1.044;SOR=0.363;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:806,0,537:6,14,11,16
chr1	33276424	.	G	A	3536.51	PASS	AC=2;AF=1;AN=2;DP=4721;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3200,284,0:0,0,55,40
chr1	33282615	.	G	A	882.78	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.493;QD=23.86;ReadPosRankSum=-2.37;SOR=1.483;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,24:37:99:911,0,417:12,1,23,1
chr1	33293748	.	T	C	365.93	PASS	AC=2;AF=1;AN=2;DP=489;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:555,48,0:0,0,5,11
chr1	33299816	.	A	T	1024.59	PASS	AC=2;AF=1;AN=2;DP=1056;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:901,66,0:0,0,3,19
chr1	33318561	.	T	C	1955.23	PASS	AC=2;AF=1;AN=2;DP=2106;FS=0;MQ=60;MQRankSum=-0.139;ReadPosRankSum=1.455;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2220,210,0:0,0,47,23
chr1	33318634	.	G	A	4633.44	PASS	AC=2;AF=1;AN=2;DP=5130;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,132:133:99:3979,388,0:1,0,71,61
chr1	33322919	.	CT	C	77.46	PASS	AC=1;AF=0.794;AN=2;DP=288;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:85:85,0,141:1,5,1,3
chr1	33324136	.	T	C	16821.5	PASS	AC=2;AF=0.762;AN=2;DP=19320;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,435:435:99:13438,1301,0:0,0,223,212
chr1	33328165	.	G	A	1880.76	PASS	AC=2;AF=0.724;AN=2;DP=2381;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2207,192,0:0,0,30,34
chr1	33330432	.	A	G	1922.4	PASS	AC=2;AF=1;AN=2;DP=3901;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,67:68:99:2213,168,0:1,0,18,49
chr1	33361215	.	CA	C	3317.47	PASS	AC=1;AF=0.5;AN=2;DP=222;FS=1.057;FractionInformativeReads=0.964;MQ=60;MQRankSum=-1.774;QD=14.94;ReadPosRankSum=0.027;SOR=0.606;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:97,117:214:99:3355,0,2600:45,52,57,60
chr1	33402334	.	GA	G,GAA	1451.02	PASS	AC=1,0;AF=0.432,0.068;AN=2;DP=11913;set=Intersection	GT:DP:GQ:SB	0/1:228:99:76,68,47,37
chr1	33430102	.	T	G	309.99	PASS	AC=2;AF=1;AN=2;DP=421;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:230,21,0:0,0,5,2
chr1	33485789	.	AACACACAC	AACACACACACACACAC,AACAC,AACACACACACACAC,A,AACACAC,AACACACACAC,AAC,AACACACACACAC,AACACACACACACACACACACAC	238.02	PASS	AC=0,1,0,0,0,0,0,0,0;AF=0.024,0.146,0.183,0.28,0.061,0.049,0.024,0.012,0.024;AN=2;DP=777;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:13:99:0,5,0,8
chr1	33486935	.	A	T	59.43	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.423;QD=4.57;ReadPosRankSum=-1.268;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:88:88,0,363:9,1,3,0
chr1	33497070	.	G	A	1328.84	PASS	AC=2;AF=0.966;AN=2;DP=2043;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1631,126,0:0,0,35,7
chr1	33497377	.	T	C	749.13	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=1.16;FractionInformativeReads=1;MQ=60;MQRankSum=0.542;QD=14.69;ReadPosRankSum=-0.143;SOR=0.914;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,29:51:99:777,0,565:7,15,8,21
chr1	33502019	.	T	A	59.45	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.37;QD=4.95;ReadPosRankSum=-0.74;SOR=0.275;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:88:88,0,237:7,2,2,1
chr1	33547750	.	G	C	583.53	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=1.309;FractionInformativeReads=1;MQ=60;MQRankSum=0.785;QD=14.96;ReadPosRankSum=-0.157;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:612,0,400:11,5,14,9
chr1	33560338	.	A	G	688.67	PASS	AC=2;AF=0.977;AN=2;DP=2478;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,54:55:99:1724,129,0:0,1,19,35
chr1	33611890	.	C	T	421.53	PASS	AC=1;AF=0.756;AN=2;DP=2663;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,36:68:99:821,0,723:15,17,20,16
chr1	33641932	.	A	G	962.34	PASS	AC=2;AF=1;AN=2;DP=3118;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.231;ReadPosRankSum=1.675;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2659,257,0:0,0,51,35
chr1	33642152	.	C	T	633.93	PASS	AC=1;AF=0.763;AN=2;DP=3524;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,44:100:99:1049,0,1505:28,28,19,25
chr1	33646950	.	A	G	2440.87	PASS	AC=1;AF=0.763;AN=2;DP=8114;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,86:188:99:2549,0,2897:44,58,31,55
chr1	33722051	.	C	CCCGCCG	1228.44	PASS	AC=2;AF=0.683;AN=2;DP=3298;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2859,192,0:0,0,34,27
chr1	33741615	.	T	A	1444.48	PASS	AC=2;AF=0.531;AN=2;DP=1308;MQ=60;set=variant3-variant6-variant8-variant9-variant12-variant14-variant18-variant24-variant25-variant27-variant29-variant30-variant31-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2903,246,0:0,0,64,18
chr1	33742228	.	T	C	538.68	PASS	AC=2;AF=1;AN=2;DP=1225;FS=0;MQ=60;MQRankSum=1.22;ReadPosRankSum=1.348;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:95:1037,95,0:0,0,14,20
chr1	33746163	.	T	C	516.56	PASS	AC=2;AF=1;AN=2;DP=1414;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:85:907,85,0:0,0,9,20
chr1	33760743	.	T	C	1421.22	PASS	AC=2;AF=0.821;AN=2;DP=5737;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4147,422,0:0,0,78,63
chr1	33777524	.	T	C	75.37	PASS	AC=2;AF=0.75;AN=2;DP=1285;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1033,78,0:0,0,22,4
chr1	33778226	.	G	A	388.61	PASS	AC=2;AF=0.607;AN=2;DP=708;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:887,75,0:0,0,9,16
chr1	33778591	.	T	C	384.67	PASS	AC=2;AF=0.75;AN=2;DP=1794;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1430,114,0:0,0,10,28
chr1	33789382	.	C	T	448.16	PASS	AC=2;AF=0.607;AN=2;DP=1675;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1839,171,0:0,0,32,25
chr1	33789520	.	C	A	1231.22	PASS	AC=2;AF=0.75;AN=2;DP=4407;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3199,325,0:0,0,60,49
chr1	33789588	.	T	C	1333.45	PASS	AC=2;AF=0.75;AN=2;DP=5298;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4061,394,0:0,0,64,68
chr1	33795597	.	C	T	528.69	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.952;QD=19.58;ReadPosRankSum=-0.386;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,18:27:99:557,0,219:7,2,14,4
chr1	33832865	.	A	G	1772.12	PASS	AC=2;AF=0.75;AN=2;DP=8098;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:5714,536,0:0,0,86,93
chr1	33834416	.	T	C	380.31	PASS	AC=1;AF=0.531;AN=2;DP=458;MQ=60;set=variant7-variant9-variant10-variant14-variant15-variant21-variant25-variant26-variant27-variant30-variant31-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,20:37:99:523,0,368:6,11,6,14
chr1	33834455	.	A	G	104.25	PASS	AC=2;AF=0.732;AN=2;DP=499;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:632,57,0:0,0,6,13
chr1	33836796	.	C	G	921.4	PASS	AC=2;AF=0.75;AN=2;DP=2659;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2468,216,0:0,0,23,49
chr1	33840795	.	T	G	1136.96	PASS	AC=2;AF=0.553;AN=2;DP=1334;MQ=60;set=variant3-variant7-variant9-variant10-variant12-variant14-variant15-variant21-variant24-variant25-variant26-variant27-variant30-variant31-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1798,179,0:0,0,34,26
chr1	33954469	.	AG	A	823.73	PASS	AC=2;AF=0.821;AN=2;DP=965;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:935,75,0:0,0,22,3
chr1	33957152	.	T	G	2173.7	PASS	AC=2;AF=1;AN=2;DP=4276;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3249,297,0:0,0,40,59
chr1	33957773	.	T	C	4857.69	PASS	AC=2;AF=0.821;AN=2;DP=7140;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4920,467,0:0,0,76,80
chr1	33957878	.	T	C	3389.63	PASS	AC=2;AF=0.821;AN=2;DP=3832;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3413,315,0:0,0,52,53
chr1	33960062	.	A	G	3237.3	PASS	AC=2;AF=0.821;AN=2;DP=4272;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3253,282,0:0,0,46,48
chr1	33961147	.	T	G	7819.59	PASS	AC=2;AF=0.821;AN=2;DP=7875;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5738,533,0:0,0,112,66
chr1	33961722	.	C	T	1351.01	PASS	AC=2;AF=0.821;AN=2;DP=2512;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2256,219,0:0,0,38,35
chr1	33985353	.	C	G	5604.24	PASS	AC=1;AF=0.743;AN=2;DP=7293;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,122:215:99:2924,0,2379:38,55,56,66
chr1	33999130	.	G	C	528.61	PASS	AC=1;AF=0.5;AN=2;DP=65;FractionInformativeReads=1;MQ=60;set=variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:246,0,482:10,6,7,2
chr1	33999174	.	GT	G	969.96	PASS	AC=1;AF=0.704;AN=2;DP=1570;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant22-variant23-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:568,0,564:17,5,13,9
chr1	33999809	.	G	A	255.31	PASS	AC=2;AF=0.828;AN=2;DP=197;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:242,18,0:0,0,0,6
chr1	34003368	.	G	A	197.39	PASS	AC=1;AF=0.704;AN=2;DP=812;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant22-variant23-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:504,0,744:10,16,6,15
chr1	34011565	.	G	T	307.03	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.68;QD=10.59;ReadPosRankSum=-2.291;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:335,0,464:10,5,10,4
chr1	34011960	.	T	C	553.33	PASS	AC=1;AF=0.5;AN=2;DP=59;MQ=60;set=variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,8:27:99:236,0,496:6,13,1,7
chr1	34033512	.	G	C	1928.26	PASS	AC=1;AF=0.6;AN=2;DP=1547;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant16-variant17-variant18-variant19-variant20-variant27-variant29-variant31-variant35-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,32:86:99:901,0,1478:23,31,16,16
chr1	34033636	.	G	A	1555.97	PASS	AC=1;AF=0.6;AN=2;DP=1131;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant16-variant17-variant18-variant19-variant20-variant27-variant29-variant31-variant35-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,25:61:99:646,0,928:14,22,9,16
chr1	34033737	.	A	C	331.77	PASS	AC=1;AF=0.625;AN=2;DP=182;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant16-variant17-variant19-variant20-variant27-variant35-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:189,0,371:2,5,1,4
chr1	34033756	.	G	A	318.49	PASS	AC=1;AF=0.643;AN=2;DP=126;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant16-variant17-variant19-variant35-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:192,0,329:2,4,1,4
chr1	34042810	.	A	G	2535.77	PASS	AC=1;AF=0.575;AN=2;DP=1644;MQ=60;set=variant-variant5-variant8-variant10-variant15-variant16-variant18-variant20-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,37:66:99:919,0,795:20,9,19,18
chr1	34043098	.	T	C	1812.66	PASS	AC=1;AF=0.5;AN=2;DP=132;FS=2.215;FractionInformativeReads=1;MQ=60;MQRankSum=-0.753;QD=13.73;ReadPosRankSum=2.148;SOR=0.9;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,76:132:99:1841,0,1337:27,29,33,43
chr1	34043169	.	TC	T	1515	PASS	AC=2;AF=1;AN=2;DP=3060;FS=0;MQ=60;MQRankSum=1.347;ReadPosRankSum=1.54;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2056,199,0:0,0,27,39
chr1	34043287	.	C	A	141.1	PASS	AC=1;AF=0.531;AN=2;DP=429;MQ=60;set=variant8-variant10-variant15-variant16-variant18-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:99:171,0,398:3,10,0,5
chr1	34052605	.	A	G	129.16	PASS	AC=2;AF=0.737;AN=2;DP=573;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:532,45,0:0,0,10,5
chr1	34057453	.	A	C	743.51	PASS	AC=1;AF=0.591;AN=2;DP=1569;MQ=60;set=variant6-variant8-variant13-variant14-variant15-variant16-variant21-variant22-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,41:83:99:1061,0,1078:23,19,20,21
chr1	34065436	.	C	T	883.3	PASS	AC=2;AF=0.588;AN=2;DP=1321;MQ=60;set=variant2-variant11-variant12-variant13-variant16-variant18-variant21-variant23-variant24-variant26-variant27-variant31-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1848,158,0:0,0,23,30
chr1	34068114	.	C	T	1760.88	PASS	AC=1;AF=0.5;AN=2;DP=129;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.096;QD=13.65;ReadPosRankSum=0.276;SOR=0.664;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,67:129:99:1789,0,1702:19,43,21,46
chr1	34070826	.	G	A	196.77	PASS	AC=1;AF=0.703;AN=2;DP=437;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:312,0,207:6,2,8,2
chr1	34071434	.	C	T	1063.14	PASS	AC=1;AF=0.697;AN=2;DP=2048;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:970,0,1035:23,15,24,12
chr1	34098959	.	C	G	659	PASS	AC=1;AF=0.542;AN=2;DP=340;MQ=60;set=variant2-variant11-variant13-variant16-variant21-variant23-variant24-variant27-variant29-variant31-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:428,0,330:8,5,9,4
chr1	34112303	.	G	A	506.19	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.866;QD=10.77;ReadPosRankSum=-2.057;SOR=0.544;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:534,0,715:19,6,16,6
chr1	34123463	.	G	C	789.51	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=1.031;FractionInformativeReads=1;MQ=60;MQRankSum=-0.2;QD=11.96;ReadPosRankSum=0.251;SOR=0.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:818,0,988:26,10,20,10
chr1	34158472	.	C	T	1521.65	PASS	AC=1;AF=0.625;AN=2;DP=3201;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,44:93:99:1725,0,2727:32,17,27,17
chr1	34158482	.	C	T	1684.95	PASS	AC=1;AF=0.625;AN=2;DP=3529;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,52:114:99:1865,0,2994:39,23,31,21
chr1	34164684	.	T	G	578.86	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=1.223;FractionInformativeReads=1;MQ=60;MQRankSum=0.328;QD=13.46;ReadPosRankSum=1.786;SOR=0.443;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:607,0,706:7,14,9,13
chr1	34189552	.	C	T	659.35	PASS	AC=1;AF=0.659;AN=2;DP=333;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant11-variant12-variant13-variant15-variant18-variant23-variant24-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:508,0,238:5,3,13,3
chr1	34189917	.	C	T	783.59	PASS	AC=1;AF=0.716;AN=2;DP=3535;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,43:89:99:964,0,1150:21,25,17,26
chr1	34189957	.	AG	A	1142.46	PASS	AC=2;AF=1;AN=2;DP=2574;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1894,166,0:0,0,16,39
chr1	34189991	.	T	C	306.32	PASS	AC=1;AF=0.5;AN=2;DP=62;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:557,0,656:4,17,5,12
chr1	34205134	.	C	T	232.71	PASS	AC=1;AF=0.757;AN=2;DP=495;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:232,0,249:1,7,3,6
chr1	34238283	.	T	C	3879.66	PASS	AC=2;AF=0.609;AN=2;DP=2794;MQ=60;set=variant2-variant5-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant27-variant29-variant30-variant33-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,138:139:99:4283,371,0:0,1,75,63
chr1	34254272	.	T	C	1895.9	PASS	AC=1;AF=0.5;AN=2;DP=166;FS=0.574;FractionInformativeReads=1;MQ=60;MQRankSum=-1.223;QD=11.42;ReadPosRankSum=2.007;SOR=0.607;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:84,82:166:99:1924,0,1826:37,47,38,44
chr1	34270498	.	G	A	3640.94	PASS	AC=2;AF=0.791;AN=2;DP=4748;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2586,246,0:0,0,27,55
chr1	34276210	.	T	TA,TAA	198.52	PASS	AC=1,0;AF=0.72,0.02;AN=2;DP=236;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant32-variant34-variant36-variant40-variant41	GT:DP:GQ:SB	0/1:7:7:1,0,5,1
chr1	34278562	.	A	G	594.52	PASS	AC=2;AF=0.791;AN=2;DP=1123;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:92:994,92,0:0,0,22,9
chr1	34279742	.	A	T	1110.14	PASS	AC=2;AF=0.791;AN=2;DP=1831;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1243,114,0:0,0,17,21
chr1	34285342	.	G	A	254.26	PASS	AC=1;AF=0.671;AN=2;DP=1505;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,12:34:99:278,0,560:13,9,9,3
chr1	34285381	.	C	T	431.94	PASS	AC=1;AF=0.671;AN=2;DP=2278;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:490,0,933:22,12,13,11
chr1	34285929	.	T	C	379.19	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.322;QD=31.6;ReadPosRankSum=-1.826;SOR=1.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,10:12:55:407,0,55:2,0,9,1
chr1	34286166	.	CAAAA	CA,CAA,C,CAAA	223.94	PASS	AC=0,0,0,2;AF=0.117,0.183,0.033,0.283;AN=2;DP=893;set=variant-filterInvariant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-filterInvariant18-variant19-variant20-variant22-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant41-filterInvariant42-variant43	GT:DP:GQ:SB	4/4:25:31:3,0,8,14
chr1	34286189	.	A	C	266.27	PASS	AC=2;AF=0.744;AN=2;DP=955;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,26:27:48:779,48,0:1,0,10,16
chr1	34326062	.	C	T	558.67	PASS	AC=2;AF=0.818;AN=2;DP=1142;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:723,57,0:0,0,16,3
chr1	34326100	.	G	A	417.24	PASS	AC=2;AF=0.556;AN=2;DP=290;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant12-variant23-variant27-variant33-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1267,99,0:0,0,27,6
chr1	34326409	.	T	C	4113.99	PASS	AC=2;AF=1;AN=2;DP=4407;FS=0;MQ=60;MQRankSum=0.874;ReadPosRankSum=0.478;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3597,317,0:0,0,39,67
chr1	34327944	.	CTGTGTGTGTGTGTGTGTGTG	CTGTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTG,C,CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTG	206.16	PASS	AC=0,0,0,0,0,0,0,0,1,0,0,0,1;AF=0.094,0.094,0.063,0.219,0.031,0.031,0.063,0.063,0.063,0.031,0.063,0.063,0.031;AN=2;DP=122;FS=0;set=variant2-variant4-variant5-variant7-variant12-variant13-variant14-variant19-variant23-variant29-variant30-variant35-variant37-variant40-variant41-variant43	GT:DP:GQ:SB	9/13:7:99:0,0,5,2
chr1	34329897	.	T	C	2501.99	PASS	AC=2;AF=0.943;AN=2;DP=4212;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3718,354,0:0,0,72,46
chr1	34330067	.	A	C	3194.7	PASS	AC=2;AF=0.818;AN=2;DP=7171;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4795,428,0:0,0,69,74
chr1	34330537	.	G	GGGA	508.82	PASS	AC=2;AF=0.622;AN=2;DP=376;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:339,24,0:0,0,2,6
chr1	34330545	.	G	A	418.6	PASS	AC=1;AF=0.561;AN=2;DP=243;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,148:3,1,0,3
chr1	34330564	.	G	A	45.21	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;set=variant6-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:31:137,0,31:1,1,4,1
chr1	34383662	.	T	C	2278.11	PASS	AC=1;AF=0.545;AN=2;DP=1573;MQ=60;set=variant3-variant13-variant15-variant25-variant27-variant30-variant31-variant32-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,57:125:99:1442,0,1690:40,28,30,27
chr1	34401453	.	A	G	710.3	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=3.809;FractionInformativeReads=1;MQ=60;MQRankSum=1.355;QD=13.4;ReadPosRankSum=2.001;SOR=1.095;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,30:53:99:739,0,558:11,12,18,12
chr1	34643837	.	A	G	631.84	PASS	AC=1;AF=0.5;AN=2;DP=184;FractionInformativeReads=1;MQ=60;set=variant32-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:595,0,754:9,19,3,17
chr1	34662672	.	G	C	811.04	PASS	AC=1;AF=0.538;AN=2;DP=1196;MQ=60;set=variant2-variant3-variant6-variant9-variant10-variant14-variant17-variant20-variant28-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,55:91:99:1425,0,968:22,14,33,22
chr1	34663180	.	G	A	1908.44	PASS	AC=1;AF=0.536;AN=2;DP=2113;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant9-variant10-variant13-variant14-variant17-variant20-variant28-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:90,75:165:99:1785,0,2255:50,40,40,35
chr1	34663208	.	C	G	1741.2	PASS	AC=1;AF=0.529;AN=2;DP=2478;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant10-variant13-variant14-variant17-variant20-variant23-variant28-variant29-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:88,78:166:99:1887,0,2220:45,43,40,38
chr1	34663411	.	C	G	887.08	PASS	AC=1;AF=0.528;AN=2;DP=1439;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant10-variant13-variant14-variant17-variant18-variant20-variant23-variant28-variant29-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,39:101:99:883,0,1794:28,34,18,21
chr1	34663612	.	T	G	262.53	PASS	AC=1;AF=0.536;AN=2;DP=244;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant9-variant10-variant14-variant17-variant18-variant20-variant28-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:333,0,672:3,8,2,7
chr1	34663618	.	G	A	265.54	PASS	AC=1;AF=0.528;AN=2;DP=288;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant10-variant13-variant14-variant17-variant18-variant20-variant23-variant28-variant29-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:270,0,612:1,6,2,5
chr1	34667863	.	C	A	1828.85	PASS	AC=1;AF=0.529;AN=2;DP=2654;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant10-variant14-variant17-variant18-variant20-variant23-variant28-variant29-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:100,67:167:99:1813,0,2702:36,64,16,51
chr1	34684463	.	G	A	516.91	PASS	AC=2;AF=0.842;AN=2;DP=2695;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2139,223,0:0,0,35,40
chr1	34684557	.	T	TAC	650.52	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=1.038;FractionInformativeReads=0.982;MQ=60;MQRankSum=0.042;QD=11.62;ReadPosRankSum=-0.942;SOR=0.81;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:688,0,1220:16,15,11,13
chr1	34684571	.	CACACAT	C	696.71	PASS	AC=1;AF=0.7;AN=2;DP=2275;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,31:61:99:1208,0,1083:14,16,17,14
chr1	34684617	.	A	T	924.77	PASS	AC=1;AF=0.5;AN=2;DP=898;MQ=60;set=variant2-variant3-variant8-variant9-variant10-variant14-variant18-variant20-variant25-variant28-variant32-variant33-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:510,0,614:15,13,12,10
chr1	34684621	.	A	G	611.18	PASS	AC=2;AF=0.829;AN=2;DP=2457;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1709,138,0:0,0,23,23
chr1	35183838	.	A	C	1416.85	PASS	AC=2;AF=0.762;AN=2;DP=2267;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1489,138,0:0,0,30,16
chr1	35184033	.	C	T	1697.02	PASS	AC=2;AF=0.756;AN=2;DP=2197;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1853,175,0:0,0,19,40
chr1	35184084	.	C	T	720	PASS	AC=2;AF=0.75;AN=2;DP=1121;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1089,87,0:0,0,6,23
chr1	35220730	.	A	G	1078.74	PASS	AC=1;AF=0.567;AN=2;DP=2905;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,41:88:99:955,0,1189:23,24,21,20
chr1	35223345	.	G	A	2145.94	PASS	AC=1;AF=0.529;AN=2;DP=2969;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant15-variant18-variant21-variant25-variant27-variant28-variant29-variant30-variant32-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,102:181:99:2813,0,2072:46,33,55,47
chr1	35223881	.	G	A	277.17	PASS	AC=1;AF=0.529;AN=2;DP=745;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant15-variant18-variant21-variant25-variant27-variant28-variant29-variant30-variant32-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:729,0,853:13,16,11,17
chr1	35228604	.	C	T	611.15	PASS	AC=2;AF=0.587;AN=2;DP=1428;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant11-variant13-variant15-variant16-variant18-variant21-variant23-variant25-variant26-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2275,215,0:0,0,34,38
chr1	35229142	.	G	A	957.76	PASS	AC=1;AF=0.5;AN=2;DP=301;MQ=60;set=variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,57:117:99:1478,0,1431:34,26,29,28
chr1	35246653	.	T	C	207.7	PASS	AC=1;AF=0.625;AN=2;DP=768;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:353,0,332:9,2,10,3
chr1	35246851	.	C	CT	1052.27	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.458;QD=15.25;ReadPosRankSum=-2.49;SOR=0.752;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,34:69:99:1090,0,1123:17,18,16,18
chr1	35251161	.	C	T	1110.92	PASS	AC=1;AF=0.538;AN=2;DP=1434;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant11-variant18-variant21-variant23-variant26-variant29-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,45:86:99:1061,0,1078:17,24,23,22
chr1	35251229	.	G	A	852.07	PASS	AC=2;AF=0.714;AN=2;DP=2227;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2029,183,0:0,0,26,35
chr1	35259946	.	G	A	11629.5	PASS	AC=1;AF=0.6;AN=2;DP=4564;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant13-variant14-variant16-variant18-variant20-variant22-variant24-variant27-variant28-variant30-variant34-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:113,117:230:99:3064,0,3111:58,55,63,54
chr1	35259961	.	A	G	1785.36	PASS	AC=2;AF=0.773;AN=2;DP=10179;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,237:237:99:9227,721,0:0,0,128,109
chr1	35260769	.	C	T	1197.38	PASS	AC=2;AF=0.633;AN=2;DP=4207;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,153:154:99:4829,447,0:1,0,57,96
chr1	35260929	.	G	A	232.42	PASS	AC=2;AF=0.773;AN=2;DP=1827;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1750,144,0:0,0,19,29
chr1	35261166	.	G	A	6300	PASS	AC=1;AF=0.6;AN=2;DP=3409;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant13-variant14-variant16-variant18-variant20-variant22-variant24-variant27-variant28-variant30-variant34-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,68:148:99:1543,0,2051:43,37,32,36
chr1	35318269	.	A	ATT,AT,ATTT	94.03	PASS	AC=2,0,0;AF=0.614,0.029,0.014;AN=2;DP=728;set=variant-variant2-variant4-variant5-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:11:33:0,0,8,3
chr1	35318368	.	A	G	1522.15	PASS	AC=2;AF=0.966;AN=2;DP=3200;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2527,243,0:0,0,47,34
chr1	35318439	.	A	G	2212.03	PASS	AC=2;AF=0.966;AN=2;DP=5013;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3692,366,0:0,0,67,55
chr1	35318934	.	C	T	1621.05	PASS	AC=2;AF=0.625;AN=2;DP=2236;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:4130,371,0:0,0,81,43
chr1	35318957	.	T	G	2299.45	PASS	AC=2;AF=0.65;AN=2;DP=2844;MQ=60;set=variant-variant4-variant5-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:5031,460,0:0,0,99,55
chr1	35319323	.	C	T	5725.13	PASS	AC=2;AF=0.966;AN=2;DP=5201;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,100:101:99:3616,292,0:0,1,17,83
chr1	35320690	.	T	G	4758.97	PASS	AC=2;AF=0.615;AN=2;DP=1868;MQ=60;set=variant4-variant15-variant16-variant17-variant18-variant22-variant25-variant28-variant31-variant33-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4979,471,0:0,0,79,78
chr1	35321291	.	T	C	2466.36	PASS	AC=1;AF=0.5;AN=2;DP=187;FS=1.132;FractionInformativeReads=1;MQ=60;MQRankSum=-0.961;QD=13.19;ReadPosRankSum=1.812;SOR=0.8;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,95:187:99:2495,0,2475:45,47,44,51
chr1	35321684	.	A	AT,ATT	54.25	PASS	AC=1,1;AF=0.535,0.081;AN=2;DP=1664;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:29:99:2,3,5,19
chr1	35322086	.	G	A	321.36	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.754;QD=18.9;ReadPosRankSum=-1.96;SOR=0.804;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:350,0,181:5,1,9,2
chr1	35323430	.	C	T	193.6	PASS	AC=1;AF=0.5;AN=2;DP=33;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:270,0,137:0,4,3,7
chr1	35323713	.	TA	T	40.59	PASS	AC=1;AF=0.5;AN=2;DP=116;MQ=60;set=filterInvariant26-variant27-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:283,0,193:6,6,9,6
chr1	35323799	.	AATC	A	664.13	PASS	AC=1;AF=0.5;AN=2;DP=96;FS=0;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,31:56:99:1216,0,994:13,12,17,14
chr1	35324635	.	C	G	869.97	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=1.19;FractionInformativeReads=1;MQ=60;MQRankSum=1.305;QD=16.41;ReadPosRankSum=2.43;SOR=0.486;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,36:53:99:898,0,362:5,12,13,23
chr1	35350382	.	C	T	728.78	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.362;QD=14.58;ReadPosRankSum=-0.616;SOR=0.627;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:757,0,503:13,9,16,12
chr1	35351563	.	G	C	223.44	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.766;QD=14.9;ReadPosRankSum=-1.12;SOR=0.743;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:252,0,199:4,2,6,3
chr1	35442313	.	T	A	4711.65	PASS	AC=2;AF=1;AN=2;DP=164;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.966;QD=28.73;ReadPosRankSum=1.491;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:2,162:164:99:4740,440,0:1,1,81,81
chr1	35442629	.	A	G	2060.23	PASS	AC=2;AF=1;AN=2;DP=62;FS=0;FractionInformativeReads=1;MQ=60;QD=33.23;SOR=1.536;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2088,186,0:0,0,41,21
chr1	35447202	.	T	A	692.78	PASS	AC=2;AF=0.583;AN=2;DP=600;MQ=60;set=variant7-variant13-variant18-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,100:102:99:2584,246,0:1,1,62,38
chr1	35449328	.	C	G	2394.12	PASS	AC=2;AF=1;AN=2;DP=75;FS=0;FractionInformativeReads=1;MQ=60;QD=31.92;SOR=1.578;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2422,225,0:0,0,50,25
chr1	35451173	.	G	A	451.63	PASS	AC=2;AF=1;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;QD=32.26;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:480,42,0:0,0,3,11
chr1	35470650	.	A	ACT	642.79	PASS	AC=2;AF=0.583;AN=2;DP=228;set=variant7-variant13-variant18-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:81:1198,81,0:0,0,18,7
chr1	35484552	.	G	A	7438.46	PASS	AC=2;AF=1;AN=2;DP=224;FS=0;FractionInformativeReads=0.996;MQ=60;QD=33.21;SOR=1.257;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,223:223:99:7467,668,0:0,0,86,137
chr1	35485300	.	C	G	174.96	PASS	AC=2;AF=0.6;AN=2;DP=74;MQ=60;set=variant7-variant13-variant18-variant34-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:468,36,0:0,0,1,11
chr1	35497529	.	G	A	1427.28	PASS	AC=2;AF=0.583;AN=2;DP=576;MQ=60;set=variant7-variant13-variant18-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3000,303,0:0,0,48,54
chr1	35545022	.	G	GGC	3281.24	PASS	AC=2;AF=1;AN=2;DP=2472;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2372,160,0:0,0,25,28
chr1	35562965	.	G	A	3735.23	PASS	AC=2;AF=0.955;AN=2;DP=4613;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3274,329,0:0,0,59,51
chr1	35563206	.	C	G	2115.8	PASS	AC=2;AF=0.943;AN=2;DP=2308;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1773,173,0:0,0,19,39
chr1	35576145	.	C	T	106.77	PASS	AC=2;AF=0.973;AN=2;DP=213;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:221,18,0:0,0,3,3
chr1	35581295	.	GT	G	12076.8	PASS	AC=2;AF=0.955;AN=2;DP=14809;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,304:304:99:10773,914,0:0,0,166,138
chr1	35581445	.	TGTAA	T	15335.7	PASS	AC=2;AF=1;AN=2;DP=361;FS=0;FractionInformativeReads=0.956;MQ=60;MQRankSum=1.351;QD=29.77;ReadPosRankSum=1.722;SOR=0.991;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:1,344:345:99:15373,1000,0:1,0,134,210
chr1	35648705	.	TAGAAG	T	4194.14	PASS	AC=1;AF=0.5;AN=2;DP=771;MQ=60;set=variant16-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:112,115:227:99:4438,0,5635:53,59,54,61
chr1	35649970	.	G	A	2968.29	PASS	AC=1;AF=0.5;AN=2;DP=751;FractionInformativeReads=1;MQ=60;set=variant16-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:132,125:257:99:2631,0,2957:67,65,60,65
chr1	35652941	.	A	G	226.21	PASS	AC=1;AF=0.5;AN=2;DP=34;FractionInformativeReads=1;MQ=60;set=variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:267,0,237:3,6,0,7
chr1	35653480	.	CTG	C	970.21	PASS	AC=1;AF=0.5;AN=2;DP=184;MQ=60;set=variant16-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,34:76:99:1297,0,1728:30,12,22,12
chr1	35653783	.	G	C	271.31	PASS	AC=1;AF=0.5;AN=2;DP=179;MQ=60;set=variant10-variant13-variant16-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:207,0,308:2,8,1,6
chr1	35654725	.	G	A	1383.6	PASS	AC=1;AF=0.5;AN=2;DP=294;FractionInformativeReads=1;MQ=60;set=variant16-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:71,47:118:99:1140,0,1919:43,28,26,21
chr1	35654765	.	G	A	2534.41	PASS	AC=1;AF=0.5;AN=2;DP=836;MQ=60;set=variant10-variant13-variant16-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:82,62:144:99:2349,0,4168:44,38,34,28
chr1	35654777	.	G	A	2681.45	PASS	AC=1;AF=0.5;AN=2;DP=871;MQ=60;set=variant10-variant13-variant16-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,67:147:99:2445,0,4178:40,40,35,32
chr1	35656064	.	T	A	495.14	PASS	AC=1;AF=0.5;AN=2;DP=167;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant16-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:216,0,438:10,3,6,4
chr1	35656664	.	G	A	1064.56	PASS	AC=1;AF=0.5;AN=2;DP=738;MQ=60;set=variant10-variant13-variant16-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,45:104:99:1211,0,1640:28,31,18,27
chr1	35657874	.	G	C	977.44	PASS	AC=1;AF=0.5;AN=2;DP=629;MQ=60;set=variant10-variant13-variant16-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,37:83:99:718,0,1201:25,21,16,21
chr1	35835939	.	ATT	ATTT,ATTTTTTT,ATTTT,A,ATTTTTT,AT	81.35	PASS	AC=0,0,1,0,0,0;AF=0.15,0.05,0.15,0.05,0.05,0.1;AN=2;DP=257;set=variant5-variant7-filterInvariant10-variant12-variant27-variant36-variant39-filterInvariant40-filterInvariant41-filterInvariant43	GT:DP:GQ:SB	0/3:10:82:2,3,3,2
chr1	35851057	.	T	A	836.5	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:865,0,890:22,14,20,10
chr1	35852521	.	G	T	270.14	PASS	AC=1;AF=0.5;AN=2;DP=332;MQ=60;set=variant7-variant8-variant9-variant10-variant17-variant25-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:337,0,465:12,1,9,3
chr1	35862096	.	T	C	751.65	PASS	AC=1;AF=0.5;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,27:62:99:780,0,910:24,11,21,6
chr1	35900615	.	A	G	1857.9	PASS	AC=1;AF=0.5;AN=2;DP=954;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant11-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:79,50:129:99:1157,0,1916:42,37,27,23
chr1	35900725	.	A	C	1070.07	PASS	AC=1;AF=0.5;AN=2;DP=186;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,44:89:99:1098,0,1047:15,30,17,27
chr1	35908451	.	T	C	830.35	PASS	AC=1;AF=0.5;AN=2;DP=516;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant11-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,39:68:99:1103,0,792:19,10,29,10
chr1	35919330	.	A	C	588.7	PASS	AC=1;AF=0.5;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,18:46:99:617,0,872:6,22,2,16
chr1	35925861	.	C	A	2372.01	PASS	AC=2;AF=0.932;AN=2;DP=3065;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2051,188,0:0,0,39,24
chr1	35926041	.	T	A	1951.84	PASS	AC=1;AF=0.5;AN=2;DP=116;FS=0.695;FractionInformativeReads=1;MQ=60;MQRankSum=-1.402;QD=16.83;ReadPosRankSum=-0.33;SOR=0.591;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,52:116:99:1980,0,5352:29,35,25,27
chr1	35926042	.	G	A	1948.85	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=1.479;FractionInformativeReads=1;MQ=60;MQRankSum=3.183;QD=16.95;ReadPosRankSum=-0.924;SOR=0.561;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:63,52:115:99:1977,0,5374:28,35,25,27
chr1	35926048	.	A	G	1792.91	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=3.578;FractionInformativeReads=1;MQ=60;MQRankSum=2.194;QD=16.6;ReadPosRankSum=1.363;SOR=0.499;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,47:108:99:1821,0,5240:26,35,24,23
chr1	35926150	.	T	C	843.02	PASS	AC=2;AF=0.536;AN=2;DP=709;MQ=60;set=variant7-variant8-variant9-variant10-variant11-variant17-variant18-variant25-variant29-variant34-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1498,135,0:0,0,15,30
chr1	36022859	.	C	T	813.61	PASS	AC=1;AF=0.5;AN=2;DP=124;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:842,0,858:24,10,21,10
chr1	36022906	.	CGGA	C	1939.63	PASS	AC=1;AF=0.5;AN=2;DP=880;MQ=60;set=variant7-variant10-variant11-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,58:122:99:2217,0,2560:38,26,32,26
chr1	36023659	.	CT	CTT,C	900.92	PASS	AC=0,1;AF=0.333,0.167;AN=2;DP=798;MQ=60;set=variant7-variant10-variant34-variant39-variant41-variant42	GT:DP:GQ:SB	0/2:114:99:33,35,21,25
chr1	36029343	.	C	T	1775.98	PASS	AC=1;AF=0.5;AN=2;DP=364;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:117,75:192:99:1804,0,2886:61,56,40,35
chr1	36031342	.	T	A	1102.4	PASS	AC=1;AF=0.5;AN=2;DP=454;MQ=60;set=variant7-variant10-variant11-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,24:59:99:543,0,905:15,20,9,15
chr1	36031860	.	G	T	1039.47	PASS	AC=1;AF=0.5;AN=2;DP=157;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,43:89:99:1068,0,1169:20,26,25,18
chr1	36031942	.	C	T	1407.69	PASS	AC=1;AF=0.5;AN=2;DP=202;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,56:108:99:1436,0,1284:27,25,28,28
chr1	36032230	.	CCACACACACA	CCACACACA,CCACACACACACA,CCA,CCACACA,C,CCACA,CCACACACACACACACACA,CCACACACACACACA	306.59	PASS	AC=0,0,0,1,0,0,0,0;AF=0.256,0.146,0.037,0.098,0.024,0.024,0.012,0.037;AN=2;DP=3137;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:48:99:16,5,15,12
chr1	36032617	.	C	T	1484.34	PASS	AC=1;AF=0.5;AN=2;DP=271;MQ=60;set=variant11-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,29:80:99:816,0,1357:20,31,17,12
chr1	36032657	.	C	T	1249.5	PASS	AC=1;AF=0.5;AN=2;DP=162;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,45:92:99:1278,0,1285:22,25,24,21
chr1	36032824	.	CT	C	2081.22	PASS	AC=1;AF=0.5;AN=2;DP=302;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:66,74:140:99:2118,0,1789:29,37,31,43
chr1	36038999	.	C	T	1566.31	PASS	AC=1;AF=0.5;AN=2;DP=263;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,65:138:99:1595,0,1821:42,31,36,29
chr1	36056484	.	G	A	1225.53	PASS	AC=1;AF=0.5;AN=2;DP=92;FS=0.807;FractionInformativeReads=1;MQ=60;MQRankSum=0.172;QD=13.32;ReadPosRankSum=1.211;SOR=0.861;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,47:92:99:1254,0,1258:18,27,17,30
chr1	36107250	.	G	C	1661.38	PASS	AC=2;AF=1;AN=2;DP=3713;FS=0;MQ=60;MQRankSum=0.709;ReadPosRankSum=0.312;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2943,279,0:0,0,35,58
chr1	36107510	.	C	A	334.14	PASS	AC=1;AF=0.875;AN=2;DP=931;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:256,0,216:3,6,4,6
chr1	36180275	.	T	A	1009.34	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=2.046;FractionInformativeReads=1;MQ=60;MQRankSum=-0.746;QD=15.06;ReadPosRankSum=-0.483;SOR=1.012;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:1038,0,959:18,15,21,13
chr1	36180651	.	C	T	1039.33	PASS	AC=1;AF=0.5;AN=2;DP=481;FractionInformativeReads=1;MQ=60;set=variant18-variant21-variant29-variant32-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,34:76:99:907,0,1290:23,19,17,17
chr1	36180972	.	C	T	1526.97	PASS	AC=1;AF=0.5;AN=2;DP=368;FractionInformativeReads=1;MQ=60;set=variant11-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,54:118:99:1517,0,1579:33,31,24,30
chr1	36184697	.	G	A	2193.46	PASS	AC=1;AF=0.5;AN=2;DP=633;MQ=60;set=variant8-variant11-variant25-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,71:142:99:2725,0,3431:36,35,35,36
chr1	36184698	.	A	T	2193.46	PASS	AC=1;AF=0.5;AN=2;DP=632;MQ=60;set=variant8-variant11-variant25-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,71:142:99:2725,0,3431:36,35,35,36
chr1	36184975	.	G	A	4341.45	PASS	AC=2;AF=1;AN=2;DP=6049;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3766,357,0:0,0,44,75
chr1	36186106	.	A	G	46.72	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=0;FractionInformativeReads=1;set=variant8-variant11-variant25-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:66:66,0,265:3,3,0,2
chr1	36203714	.	A	T	80.42	PASS	AC=1;AF=0.9;AN=2;DP=35;FS=0;MQ=60;set=variant18-variant25-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,9:11:23:175,0,23:1,1,3,6
chr1	36213712	.	G	T	1094.11	PASS	AC=2;AF=1;AN=2;DP=1659;FS=0;MQ=60;MQRankSum=1.639;ReadPosRankSum=1.639;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1211,111,0:0,0,11,26
chr1	36214133	.	G	A	544.02	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.701;QD=14.32;ReadPosRankSum=0.876;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:572,0,505:9,10,9,10
chr1	36214421	.	CTTTTTTTTTTT	CTTTTTTTTTT,CTTTTTTTTTTTT,C,CTTTTTTTTT,CTTTTTTTT,CTT	172.83	PASS	AC=0,0,1,0,0,0;AF=0.25,0.036,0.107,0.071,0.036,0.036;AN=2;DP=452;set=variant2-variant8-variant11-filterInvariant14-filterInvariant16-variant18-filterInvariant19-variant27-variant34-filterInvariant35-variant36-variant37-variant41-variant42	GT:DP:GQ:SB	0/3:18:99:1,8,2,7
chr1	36219317	.	C	CA	710.47	PASS	AC=1;AF=0.5;AN=2;DP=365;MQ=60;set=variant18-variant21-variant29-variant32-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:820,0,886:21,14,21,12
chr1	36225948	.	T	C	1239.89	PASS	AC=2;AF=0.545;AN=2;DP=1406;MQ=60;set=variant8-variant11-variant18-variant21-variant25-variant29-variant32-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4006,384,0:0,0,73,55
chr1	36273771	.	T	TGGC	767.55	PASS	AC=1;AF=0.5;AN=2;DP=106;MQ=60;set=variant11-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:518,0,213:4,3,5,8
chr1	36274130	.	G	A	346.72	PASS	AC=1;AF=0.5;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant18-variant21-variant29-variant32-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:505,0,545:9,10,14,6
chr1	36282399	.	CAAAAAAAAAAAAA	CAAAAAAAAAAAA,C	50.57	PASS	AC=1,1;AF=0.438,0.094;AN=2;DP=386;set=filterInvariant7-variant11-variant12-filterInvariant19-variant23-variant25-filterInvariant27-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-filterInvariant43	GT:DP:GQ:SB	2/1:21:99:0,1,16,4
chr1	36282419	.	A	G	591.18	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=0;set=variant21-variant29-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:222,0,683:12,7,7,4
chr1	36307412	.	CATAT	C,CAT	212.59	PASS	AC=0,1;AF=0.139,0.639;AN=2;DP=653;FS=0;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-filterInvariant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/2:8:11:0,1,1,6
chr1	36316401	.	C	A	83.84	PASS	AC=1;AF=0.5;AN=2;DP=145;set=filterInvariant3-variant18-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:121,0,263:8,4,6,1
chr1	36316418	.	C	CA	1332.99	PASS	AC=2;AF=1;AN=2;DP=2394;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:3,42:45:55:1083,55,0:2,1,29,13
chr1	36316678	.	G	C	1145.87	PASS	AC=1;AF=0.5;AN=2;DP=526;FractionInformativeReads=1;MQ=60;set=variant18-variant21-variant29-variant32-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,40:92:99:1001,0,1305:23,29,13,27
chr1	36320901	.	G	T	575.45	PASS	AC=1;AF=0.5;AN=2;DP=313;FractionInformativeReads=1;MQ=60;set=variant18-variant21-variant29-variant32-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,22:56:99:531,0,805:18,16,11,11
chr1	36321253	.	CTT	CT,CTTT,C	241.93	PASS	AC=1,0,0;AF=0.487,0.013,0.013;AN=2;DP=3886;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-filterInvariant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-filterInvariant28-variant29-filterInvariant30-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:69:99:16,23,13,17
chr1	36359669	.	A	G	871.94	PASS	AC=1;AF=0.5;AN=2;DP=224;FractionInformativeReads=1;MQ=60;set=variant11-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,45:97:99:1185,0,1301:27,25,23,22
chr1	36367780	.	A	G	891.46	PASS	AC=2;AF=0.583;AN=2;DP=944;MQ=60;set=variant8-variant11-variant18-variant21-variant25-variant29-variant32-variant34-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2648,266,0:0,0,49,40
chr1	36372409	.	GA	G,GAA	72.76	PASS	AC=1,0;AF=0.467,0.033;AN=2;DP=1101;set=filterInvariant-variant3-variant4-variant5-variant6-variant7-filterInvariant9-variant10-variant12-variant15-filterInvariant16-filterInvariant17-variant18-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-filterInvariant33-filterInvariant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:43:99:26,5,11,1
chr1	36386377	.	C	T	1475.57	PASS	AC=1;AF=0.5;AN=2;DP=114;FS=0.709;FractionInformativeReads=1;MQ=60;MQRankSum=-1.221;QD=12.94;ReadPosRankSum=-1.437;SOR=0.616;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,53:114:99:1504,0,1667:38,23,32,21
chr1	36386884	.	CTTT	CT,C,CTT,CTTTT,CTTTTT	104.76	PASS	AC=1,0,0,0,0;AF=0.167,0.033,0.167,0.167,0.033;AN=2;DP=574;set=variant4-variant5-variant7-variant10-filterInvariant11-variant21-filterInvariant27-variant29-filterInvariant30-variant32-filterInvariant33-variant37-variant38-variant41-filterInvariant43	GT:DP:GQ:SB	0/1:38:99:15,13,5,5
chr1	36387848	.	A	G	964.11	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=5.722;FractionInformativeReads=1;MQ=60;MQRankSum=0.172;QD=11.76;ReadPosRankSum=-2.925;SOR=0.688;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,38:82:99:992,0,1250:26,18,17,21
chr1	36388885	.	CT	C	206.47	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=8.923;FractionInformativeReads=0.967;MQ=60;MQRankSum=0.742;QD=6.88;ReadPosRankSum=0.427;SOR=1.706;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:244,0,435:11,7,3,8
chr1	36390519	.	A	G	534.09	PASS	AC=1;AF=0.5;AN=2;DP=99;FractionInformativeReads=1;MQ=60;set=variant11-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:422,0,321:7,7,9,8
chr1	36390527	.	A	G	319.04	PASS	AC=2;AF=0.571;AN=2;DP=222;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant25-variant32-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1184,93,0:0,0,16,15
chr1	36393158	.	A	G	327.84	PASS	AC=2;AF=0.966;AN=2;DP=1484;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1401,114,0:0,0,15,23
chr1	36393457	.	C	T	796.76	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=0.998;FractionInformativeReads=1;MQ=60;MQRankSum=-1.275;QD=13.5;ReadPosRankSum=3.153;SOR=0.627;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,33:59:99:825,0,701:12,14,17,16
chr1	36411538	.	C	T	343.28	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.205;QD=13.2;ReadPosRankSum=-0.821;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:372,0,345:4,9,4,9
chr1	36448802	.	T	C	1294.84	PASS	AC=1;AF=0.5;AN=2;DP=132;FS=1.445;FractionInformativeReads=1;MQ=60;MQRankSum=-0.394;QD=9.81;ReadPosRankSum=-1.54;SOR=0.546;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:76,56:132:99:1323,0,1996:27,49,22,34
chr1	36474198	.	G	C	499.92	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=1.768;FractionInformativeReads=1;MQ=60;MQRankSum=0.753;QD=16.66;ReadPosRankSum=0.042;SOR=1.508;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:528,0,412:9,4,14,3
chr1	36492651	.	A	G	877.91	PASS	AC=1;AF=0.5;AN=2;DP=111;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:906,0,994:25,8,22,10
chr1	36501890	.	C	G	1211.06	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=1.739;FractionInformativeReads=1;MQ=60;MQRankSum=0.146;QD=13.46;ReadPosRankSum=0.437;SOR=0.904;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,49:90:99:1239,0,938:17,24,18,31
chr1	36549664	.	G	A	902.26	PASS	AC=1;AF=0.845;AN=2;DP=957;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:192,0,209:7,0,6,2
chr1	36550608	.	A	G	1754.04	PASS	AC=1;AF=0.5;AN=2;DP=127;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.916;QD=13.81;ReadPosRankSum=-1.68;SOR=0.752;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,68:127:99:1782,0,1548:33,26,39,29
chr1	36551839	.	C	T	129.74	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:158,0,280:1,7,1,4
chr1	36551895	.	A	G	103.54	PASS	AC=2;AF=1;AN=2;DP=171;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:221,18,0:0,0,1,5
chr1	36553516	.	C	A	1680.51	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.271;QD=15.56;ReadPosRankSum=0.233;SOR=0.629;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,62:108:99:1709,0,1252:17,29,24,38
chr1	36553673	.	A	G	2389.27	PASS	AC=2;AF=0.943;AN=2;DP=5525;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3843,377,0:0,0,66,60
chr1	36557202	.	C	T	1598.8	PASS	AC=1;AF=0.5;AN=2;DP=127;FS=0.679;FractionInformativeReads=1;MQ=60;MQRankSum=-1.15;QD=12.59;ReadPosRankSum=-3.248;SOR=0.803;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,63:127:99:1627,0,1651:39,25,40,23
chr1	36557619	.	G	A	3260.1	PASS	AC=1;AF=0.5;AN=2;DP=792;MQ=60;set=variant11-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:130,132:262:99:3196,0,3339:56,74,58,74
chr1	36558248	.	A	G	533.08	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=3.153;FractionInformativeReads=1;MQ=60;MQRankSum=0.85;QD=17.2;ReadPosRankSum=-0.178;SOR=2.419;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:561,0,507:2,14,0,15
chr1	36559553	.	C	T	326.92	PASS	AC=1;AF=0.5;AN=2;DP=45;FractionInformativeReads=1;MQ=60;QD=11.68;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:355,0,446:5,11,2,10
chr1	36559621	.	G	A	89.64	PASS	AC=1;AF=0.75;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.467;ReadPosRankSum=-0.259;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:118,0,136:3,3,2,4
chr1	36561853	.	C	T	3022.95	PASS	AC=2;AF=0.75;AN=2;DP=173;FractionInformativeReads=1;MQ=60;MQRankSum=-1.631;ReadPosRankSum=-0.671;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3051,296,0:0,0,48,51
chr1	36561956	.	C	A	960.74	PASS	AC=2;AF=0.625;AN=2;DP=258;FractionInformativeReads=1;MQ=60;set=variant11-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2109,206,0:0,0,31,38
chr1	36562078	.	T	C	1308.87	PASS	AC=2;AF=0.625;AN=2;DP=224;MQ=60;set=variant11-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1469,132,0:0,0,17,27
chr1	36562203	.	C	T	526.9	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=4.561;FractionInformativeReads=1;MQ=60;MQRankSum=0.565;QD=12.85;ReadPosRankSum=1.511;SOR=0.725;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:555,0,456:7,11,13,10
chr1	36562551	.	A	G	1682.42	PASS	AC=2;AF=0.625;AN=2;DP=450;FractionInformativeReads=1;MQ=60;set=variant11-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4023,377,0:0,0,60,66
chr1	36565584	.	C	G	996.82	PASS	AC=2;AF=0.898;AN=2;DP=1750;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1306,120,0:0,0,29,11
chr1	36565617	.	G	A	1364.48	PASS	AC=1;AF=0.829;AN=2;DP=2638;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:633,0,757:19,10,18,13
chr1	36602943	.	C	T	1029.85	PASS	AC=2;AF=0.825;AN=2;DP=2480;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1643,163,0:0,0,18,37
chr1	36603290	.	C	T	404.99	PASS	AC=1;AF=0.8;AN=2;DP=791;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:310,0,174:5,1,8,3
chr1	36603794	.	G	A	1009.22	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=4.003;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;QD=11.21;ReadPosRankSum=-3.853;SOR=1.151;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,40:90:99:1037,0,1254:25,25,16,24
chr1	36614664	.	GT	G	638.06	PASS	AC=2;AF=0.825;AN=2;DP=1859;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1719,138,0:0,0,35,11
chr1	36614679	.	T	C	819.31	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=6.889;FractionInformativeReads=1;MQ=60;MQRankSum=0.059;QD=14.9;ReadPosRankSum=0.817;SOR=0.16;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:848,0,910:23,4,19,9
chr1	36614713	.	C	G	1216.68	PASS	AC=2;AF=0.825;AN=2;DP=3026;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3192,264,0:0,0,64,24
chr1	36641729	.	C	T	96.7	PASS	AC=1;AF=0.686;AN=2;DP=781;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:268,0,345:9,7,6,4
chr1	36642420	.	T	C	298.53	PASS	AC=2;AF=0.714;AN=2;DP=1286;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1191,117,0:0,0,15,24
chr1	36643393	.	G	A	682.6	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=1.912;FractionInformativeReads=1;MQ=60;MQRankSum=0.29;QD=8.86;ReadPosRankSum=0.219;SOR=0.476;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,38:77:99:711,0,898:25,14,22,16
chr1	36643729	.	G	C	436.16	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=1.243;FractionInformativeReads=1;MQ=60;MQRankSum=0.576;QD=11.18;ReadPosRankSum=-0.323;SOR=0.457;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:464,0,482:8,12,9,10
chr1	36644432	.	C	CGGCG	1153.49	PASS	AC=1;AF=0.5;AN=2;DP=125;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:892,0,1521:18,12,14,9
chr1	36644469	.	C	T	668.97	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=3.249;FractionInformativeReads=1;MQ=60;MQRankSum=-0.384;QD=8.8;ReadPosRankSum=-0.3;SOR=0.391;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,32:76:99:697,0,1253:30,14,19,13
chr1	36646409	.	A	C	186.9	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=4.415;FractionInformativeReads=1;MQ=60;MQRankSum=0.228;QD=9.35;ReadPosRankSum=2.431;SOR=0.493;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:215,0,270:3,8,5,4
chr1	36646491	.	A	G	109.63	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:100,0,184:1,5,0,3
chr1	36747997	.	AT	A,TT	551.09	PASS	AC=1,1;AF=0.603,0.034;AN=2;DP=1647;set=variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant37-filterInvariant38-variant41-variant42-variant44	GT:DP:GQ:SB	1/2:41:99:5,2,23,11
chr1	36748355	.	A	G	1660.22	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=1.429;FractionInformativeReads=1;MQ=60;MQRankSum=-1.093;QD=13.61;ReadPosRankSum=-0.776;SOR=0.836;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,60:122:99:1688,0,1716:29,33,26,34
chr1	36752245	.	G	A	1312.96	PASS	AC=1;AF=0.5;AN=2;DP=147;FS=2.194;FractionInformativeReads=1;MQ=59.83;MQRankSum=-0.772;QD=8.93;ReadPosRankSum=-0.449;SOR=0.909;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:91,56:147:99:1341,0,2401:54,37,36,20
chr1	36752687	.	A	G	2301.29	PASS	AC=1;AF=0.5;AN=2;DP=178;FS=0;FractionInformativeReads=0.994;MQ=60;MQRankSum=0.824;QD=12.93;ReadPosRankSum=1.07;SOR=0.692;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:85,92:177:99:2330,0,2208:36,49,39,53
chr1	36754467	.	G	C	1463.1	PASS	AC=1;AF=0.977;AN=2;DP=1534;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:520,0,607:14,6,13,6
chr1	36754522	.	C	A	3232.31	PASS	AC=1;AF=0.977;AN=2;DP=3525;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:972,0,849:18,15,20,15
chr1	36755483	.	T	C	75.13	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=4.771;FractionInformativeReads=1;MQ=60;MQRankSum=-0.825;QD=6.26;ReadPosRankSum=0.289;SOR=0.048;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:103,0,308:0,8,1,3
chr1	36759330	.	A	T	483.66	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=1.541;FractionInformativeReads=1;MQ=60;MQRankSum=0.594;QD=13.07;ReadPosRankSum=-0.747;SOR=1.091;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:512,0,623:15,5,14,3
chr1	36762396	.	C	T	1486.61	PASS	AC=1;AF=0.977;AN=2;DP=2544;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,33:58:99:781,0,651:11,14,16,17
chr1	36770554	.	C	G	54.21	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;QD=13.55;ReadPosRankSum=-0.727;SOR=0.916;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:82,0,34:1,0,1,2
chr1	36770806	.	C	G	2595.29	PASS	AC=2;AF=0.989;AN=2;DP=2225;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1429,114,0:0,0,33,5
chr1	36772868	.	C	G	1438.85	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=1.5;FractionInformativeReads=0.991;MQ=60;MQRankSum=-1.15;QD=12.51;ReadPosRankSum=-1.485;SOR=0.85;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,57:114:99:1467,0,1398:29,28,26,31
chr1	36773590	.	C	T	512.61	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=5.153;FractionInformativeReads=1;MQ=60;MQRankSum=-0.743;QD=14.65;ReadPosRankSum=-1.304;SOR=0.204;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:541,0,619:5,13,8,9
chr1	36773819	.	C	G	1846.8	PASS	AC=1;AF=0.977;AN=2;DP=3814;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:44,48:92:99:1213,0,1107:22,22,24,24
chr1	36785853	.	C	A	1873.34	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.582;QD=19.72;ReadPosRankSum=0.369;SOR=0.728;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,49:95:99:1902,0,2627:22,24,23,26
chr1	36785855	.	C	T	1873.34	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-3.556;QD=19.72;ReadPosRankSum=1.076;SOR=0.645;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,49:95:99:1902,0,2627:21,25,23,26
chr1	36788356	.	A	G	1917.97	PASS	AC=2;AF=0.989;AN=2;DP=2857;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2121,189,0:0,0,31,32
chr1	36793959	.	G	A	352.54	PASS	AC=1;AF=0.567;AN=2;DP=613;MQ=60;set=variant-variant2-variant4-variant8-variant9-variant11-variant12-variant24-variant25-variant32-variant33-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:421,0,418:5,9,7,9
chr1	36794138	.	G	A	39.44	PASS	AC=1;AF=0.577;AN=2;DP=99;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant9-variant11-variant12-variant24-variant25-variant32-variant33-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:72:131,0,72:1,2,2,3
chr1	36806071	.	G	A	609.84	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.795;QD=10.51;ReadPosRankSum=-0.731;SOR=0.775;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,23:58:99:638,0,1014:22,13,15,8
chr1	36807563	.	C	T	2081.7	PASS	AC=1;AF=0.5;AN=2;DP=303;MQ=60;set=variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,67:153:99:1624,0,2109:47,39,32,35
chr1	36809698	.	A	C	959.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=9236;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:108,74:182:99:1414,0,4559:11,97,74,0
chr1	36809705	.	G	C	77.77	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4240;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:111,47:158:99:329,0,5114:13,98,47,0
chr1	36809708	.	A	G	226.87	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1087;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:118,31:149:99:358,0,5011:16,102,31,0
chr1	36809726	.	A	G	2154.64	PASS	AC=1;AF=0.5;AN=2;DP=148;FS=2.642;FractionInformativeReads=0.993;MQ=60;MQRankSum=0.376;QD=14.56;ReadPosRankSum=-1.404;SOR=0.471;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,66:147:99:2183,0,2698:15,66,15,51
chr1	36819930	.	G	T	1353.52	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.663;QD=13.67;ReadPosRankSum=0.298;SOR=0.653;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,53:99:99:1382,0,1176:30,16,34,19
chr1	36820181	.	G	A	663.9	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=1.368;FractionInformativeReads=1;MQ=60;MQRankSum=-1.866;QD=14.13;ReadPosRankSum=-2.228;SOR=1.018;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:692,0,724:6,19,4,18
chr1	36820752	.	G	A	777.14	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=1.341;FractionInformativeReads=1;MQ=60;MQRankSum=-1.814;QD=16.89;ReadPosRankSum=2.342;SOR=1.059;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:805,0,667:16,6,19,5
chr1	36820783	.	C	T	1044.42	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.965;QD=15.59;ReadPosRankSum=-1.217;SOR=0.716;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,37:67:99:1073,0,832:21,9,26,11
chr1	36859310	.	C	T	974.03	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=6.45;FractionInformativeReads=1;MQ=60;MQRankSum=-1.765;QD=13.53;ReadPosRankSum=-0.211;SOR=1.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,30:72:99:1002,0,1253:23,19,21,9
chr1	36863523	.	A	G	2392.03	PASS	AC=1;AF=0.955;AN=2;DP=3865;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,45:90:99:1071,0,1016:22,23,18,27
chr1	36883673	.	G	C	1324.69	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=2.795;FractionInformativeReads=1;MQ=60;MQRankSum=0.146;QD=14.72;ReadPosRankSum=-0.624;SOR=0.974;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,49:90:99:1353,0,1187:21,20,21,28
chr1	36886117	.	C	T	1043.16	PASS	AC=1;AF=0.583;AN=2;DP=1592;MQ=60;set=variant-variant6-variant7-variant8-variant11-variant13-variant20-variant21-variant22-variant27-variant28-variant29-variant30-variant34-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,52:92:99:1316,0,971:24,16,30,22
chr1	36886364	.	C	G	937.28	PASS	AC=1;AF=0.757;AN=2;DP=950;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:513,0,517:2,15,4,14
chr1	36887702	.	C	T	2791	PASS	AC=1;AF=0.757;AN=2;DP=2326;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,40:80:99:1063,0,982:22,18,27,13
chr1	36893790	.	CAAAAA	CAAAAAAAA,CAAAA,CAAA,CAAAAAAA,CAAAAAAAAAA,CAAAAAA,C	216.67	PASS	AC=0,0,0,1,0,0,0;AF=0.052,0.155,0.052,0.19,0.017,0.069,0.034;AN=2;DP=1041;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant36-variant37-variant38-filterInvariant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/4:25:99:14,1,5,5
chr1	36909753	.	G	T	313	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.882;QD=12.04;ReadPosRankSum=3.01;SOR=0.871;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:341,0,540:2,13,1,10
chr1	36926445	.	C	T	990.03	PASS	AC=1;AF=0.648;AN=2;DP=2756;MQ=60;set=variant2-variant4-variant6-variant9-variant12-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,49:99:99:1088,0,1224:23,27,20,29
chr1	36927733	.	G	A	2819.16	PASS	AC=2;AF=0.989;AN=2;DP=3266;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2546,247,0:0,0,55,28
chr1	36933715	.	A	G	1451.5	PASS	AC=1;AF=0.5;AN=2;DP=126;FS=0.664;FractionInformativeReads=1;MQ=60;MQRankSum=1.12;QD=11.52;ReadPosRankSum=-2.029;SOR=0.594;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,59:126:99:1480,0,1567:30,37,28,31
chr1	36935128	.	G	A	484.86	PASS	AC=2;AF=0.618;AN=2;DP=893;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant27-variant31-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2419,200,0:0,0,43,24
chr1	36937059	.	A	G	3488.27	PASS	AC=2;AF=0.726;AN=2;DP=4225;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,132:133:99:4904,395,0:1,0,68,64
chr1	36937065	.	A	G	1060.37	PASS	AC=1;AF=0.588;AN=2;DP=2273;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant27-variant31-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,64:132:99:1388,0,1566:34,34,32,32
chr1	36938037	.	A	C	1390.31	PASS	AC=1;AF=0.5;AN=2;DP=114;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.272;QD=12.2;ReadPosRankSum=1.221;SOR=0.705;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,56:114:99:1419,0,1719:24,34,23,33
chr1	36947196	.	G	T	173.38	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.067;QD=21.67;ReadPosRankSum=-1.067;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:63:202,0,63:1,1,1,5
chr1	37262884	.	CAT	C	33.98	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=44;FS=0;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:77:77,0,300:4,5,1,2
chr1	37282814	.	C	T	1125.13	PASS	AC=1;AF=0.5;AN=2;DP=165;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.879;QD=6.82;ReadPosRankSum=-0.461;SOR=0.68;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:113,52:165:99:1153,0,3043:59,54,27,25
chr1	37335458	.	A	G	2444.71	PASS	AC=1;AF=0.898;AN=2;DP=4368;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:50,45:95:99:1128,0,1294:17,33,16,29
chr1	37335485	.	A	G	1982.53	PASS	AC=1;AF=0.898;AN=2;DP=2813;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:907,0,1709:6,25,5,20
chr1	37335494	.	G	T	1681.77	PASS	AC=1;AF=0.898;AN=2;DP=2417;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:915,0,1555:6,20,3,20
chr1	37626981	.	T	C	88.71	PASS	AC=2;AF=0.72;AN=2;DP=655;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:684,48,0:0,0,16,0
chr1	37940175	.	A	G	206.9	PASS	AC=2;AF=0.989;AN=2;DP=720;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:453,48,0:0,0,8,8
chr1	37941662	.	G	A	656.53	PASS	AC=1;AF=0.5;AN=2;DP=434;FractionInformativeReads=1;MQ=60;set=variant22-variant23-variant24-variant35-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,33:59:99:837,0,725:10,16,12,21
chr1	37947336	.	G	A	2026.21	PASS	AC=1;AF=0.5;AN=2;DP=312;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,89:163:99:2054,0,1671:37,37,40,49
chr1	37948212	.	C	G	2706.88	PASS	AC=1;AF=0.614;AN=2;DP=3221;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant15-variant17-variant18-variant21-variant22-variant27-variant29-variant31-variant33-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,88:165:99:2508,0,2203:42,35,46,42
chr1	37959450	.	T	C	1809.26	PASS	AC=1;AF=0.864;AN=2;DP=6578;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,84:146:99:2172,0,1495:24,38,35,49
chr1	37959470	.	C	G	1692.8	PASS	AC=1;AF=0.864;AN=2;DP=5570;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:55,71:126:99:1800,0,1403:21,34,28,43
chr1	37959499	.	G	C	1665.97	PASS	AC=1;AF=0.568;AN=2;DP=2107;MQ=60;set=variant3-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,57:95:99:1483,0,996:13,25,20,37
chr1	37961297	.	AC	A	527.91	PASS	AC=1;AF=0.577;AN=2;DP=350;set=variant11-variant14-variant15-variant18-variant19-filterInvariant21-variant23-variant24-variant29-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:368,0,1109:12,7,9,2
chr1	37961317	.	A	C	916.5	PASS	AC=1;AF=0.548;AN=2;DP=944;set=variant3-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:673,0,1145:16,7,16,7
chr1	37967707	.	ATTGACAGAGAAGATACATG	A	201.29	PASS	AC=1;AF=0.89;AN=2;DP=1537;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:270,0,642:0,10,0,7
chr1	37967774	.	C	A	233.18	PASS	AC=1;AF=0.864;AN=2;DP=695;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:267,0,274:0,8,0,7
chr1	37975279	.	C	T	227.1	PASS	AC=2;AF=0.898;AN=2;DP=2200;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1438,137,0:0,0,14,32
chr1	37975312	.	T	C	467.75	PASS	AC=1;AF=0.881;AN=2;DP=1497;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:373,0,481:4,13,5,10
chr1	37978897	.	G	A	889.57	PASS	AC=1;AF=0.568;AN=2;DP=1774;MQ=60;set=variant3-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,33:71:99:795,0,1031:27,11,22,11
chr1	37980446	.	A	C	1039.35	PASS	AC=1;AF=0.542;AN=2;DP=522;MQ=60;set=variant-variant2-variant5-variant10-variant14-variant19-variant25-variant30-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,25:61:99:724,0,956:10,26,4,21
chr1	38006359	.	A	G	74.91	PASS	AC=1;AF=0.881;AN=2;DP=2261;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,35:54:99:773,0,471:6,13,15,20
chr1	38023316	.	C	T	2209.05	PASS	AC=1;AF=0.565;AN=2;DP=4602;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:108,99:207:99:2241,0,2637:52,56,54,45
chr1	38046920	.	G	T	661.79	PASS	AC=1;AF=0.864;AN=2;DP=2854;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,27:67:99:689,0,910:22,18,18,9
chr1	38049552	.	C	G	718.11	PASS	AC=1;AF=0.872;AN=2;DP=2661;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:721,0,791:10,18,10,18
chr1	38052895	.	CA	C	1100.66	PASS	AC=1;AF=0.5;AN=2;DP=120;FS=1.571;FractionInformativeReads=0.992;MQ=60;MQRankSum=-2.746;QD=9.17;ReadPosRankSum=1.281;SOR=0.54;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,53:119:99:1138,0,1481:46,20,35,18
chr1	38061572	.	G	T	448.21	PASS	AC=1;AF=0.864;AN=2;DP=2466;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,33:52:99:968,0,461:6,13,12,21
chr1	38077067	.	A	G	480.5	PASS	AC=1;AF=0.872;AN=2;DP=2213;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,31:50:99:879,0,454:13,6,22,9
chr1	38077349	.	CTTATCCCCATACTAGTTATTATCGAAACCATCAGCCTACTCATTCAACCAATAGCCCTGGCCGTACGCCTA	C	396.34	PASS	AC=1;AF=0.864;AN=2;DP=2035;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:805,0,6584:4,11,9,12
chr1	38078171	.	G	GGT,GGTGT,GGTGTGTGT	285.14	PASS	AC=0,1,0;AF=0.535,0.267,0.023;AN=2;DP=2203;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:47:99:16,12,9,10
chr1	38078630	.	A	T	821	PASS	AC=1;AF=0.563;AN=2;DP=1684;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,37:55:99:1060,0,375:7,11,11,26
chr1	38082122	.	G	A	1061.47	PASS	AC=1;AF=0.563;AN=2;DP=808;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:1045,0,1515:13,14,16,11
chr1	38082123	.	C	T	1061.47	PASS	AC=1;AF=0.563;AN=2;DP=822;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:1045,0,1515:14,13,16,12
chr1	38097519	.	A	C	2343.09	PASS	AC=1;AF=0.5;AN=2;DP=971;MQ=60;set=variant-variant19-variant25-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,80:147:99:2016,0,1556:43,24,51,29
chr1	38098129	.	T	G	201.21	PASS	AC=2;AF=0.989;AN=2;DP=496;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:26:285,26,0:0,0,3,6
chr1	38098177	.	CA	C	79.49	PASS	AC=2;AF=0.974;AN=2;DP=189;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:197,15,0:0,0,1,4
chr1	38147166	.	T	C	136.68	PASS	AC=2;AF=0.583;AN=2;DP=189;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:355,36,0:0,0,8,4
chr1	38148123	.	T	G	1459.5	PASS	AC=2;AF=0.55;AN=2;DP=957;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2457,166,0:0,0,32,23
chr1	38148124	.	G	A	1459.5	PASS	AC=2;AF=0.55;AN=2;DP=968;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2457,166,0:0,0,32,23
chr1	38148765	.	A	G	873.98	PASS	AC=2;AF=0.846;AN=2;DP=2924;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2586,225,0:0,0,33,42
chr1	38149193	.	C	T	894.54	PASS	AC=2;AF=0.55;AN=2;DP=1236;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1855,152,0:0,0,18,33
chr1	38149692	.	C	G	1139.97	PASS	AC=2;AF=0.55;AN=2;DP=1425;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2168,204,0:0,0,27,41
chr1	38149847	.	A	G	490.38	PASS	AC=2;AF=0.55;AN=2;DP=824;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1233,114,0:0,0,15,23
chr1	38155141	.	G	GGT	1003.98	PASS	AC=2;AF=0.55;AN=2;DP=952;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2520,168,0:0,0,34,22
chr1	38155265	.	G	C	1504.56	PASS	AC=2;AF=0.55;AN=2;DP=1969;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2923,267,0:0,0,44,45
chr1	38155723	.	C	A	63.45	PASS	AC=2;AF=0.563;AN=2;DP=118;MQ=60;set=variant3-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant20-variant21-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:132,9,0:0,0,0,3
chr1	38156190	.	C	G	1532.17	PASS	AC=2;AF=0.55;AN=2;DP=1467;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2408,231,0:0,0,32,45
chr1	38161694	.	A	G	1188.44	PASS	AC=2;AF=0.648;AN=2;DP=2454;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2441,240,0:0,0,36,44
chr1	38164724	.	C	G	1363.87	PASS	AC=2;AF=0.648;AN=2;DP=2639;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2871,268,0:0,0,33,57
chr1	38166022	.	T	C	751.21	PASS	AC=2;AF=0.648;AN=2;DP=1576;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1633,165,0:0,0,34,21
chr1	38166327	.	A	T	677.34	PASS	AC=2;AF=0.648;AN=2;DP=1589;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1585,161,0:0,0,26,28
chr1	38167361	.	A	C,AC	1148.04	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=43;FS=0;FractionInformativeReads=0.744;MQ=60;QD=26.7;SOR=1.284;set=variant41	GT:AD:DP:GQ:PL:SB	1/2:0,12,20:32:99:1176,481,383,296,0,197:0,0,20,12
chr1	38174185	.	G	T	1987.39	PASS	AC=2;AF=0.648;AN=2;DP=4325;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4186,395,0:0,0,66,66
chr1	38174375	.	G	A	648.59	PASS	AC=2;AF=0.545;AN=2;DP=1001;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2972,273,0:0,0,41,50
chr1	38174665	.	G	A	1002.95	PASS	AC=2;AF=0.545;AN=2;DP=1165;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2588,272,0:0,0,46,47
chr1	38174987	.	T	C	619.88	PASS	AC=2;AF=0.846;AN=2;DP=2501;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1827,176,0:0,0,27,32
chr1	38182164	.	T	A	2494.04	PASS	AC=2;AF=0.55;AN=2;DP=2765;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4139,413,0:0,0,71,67
chr1	38182233	.	TG	T	2044.74	PASS	AC=2;AF=0.55;AN=2;DP=2536;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3548,334,0:0,0,54,57
chr1	38182333	.	G	T	2265.89	PASS	AC=2;AF=0.55;AN=2;DP=2710;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2939,278,0:0,0,45,48
chr1	38182960	.	C	T	1119.13	PASS	AC=2;AF=0.55;AN=2;DP=1179;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1397,139,0:0,0,26,21
chr1	38184316	.	T	C	1129.91	PASS	AC=2;AF=0.55;AN=2;DP=1427;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2144,182,0:0,0,22,39
chr1	38185647	.	G	A	1084.14	PASS	AC=2;AF=0.545;AN=2;DP=1293;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4072,405,0:0,0,59,76
chr1	38185723	.	C	T	487.44	PASS	AC=2;AF=0.545;AN=2;DP=586;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1803,174,0:0,0,20,38
chr1	38186206	.	C	G	1107.12	PASS	AC=2;AF=0.545;AN=2;DP=1620;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3640,377,0:0,0,65,61
chr1	38186310	.	G	A	855.83	PASS	AC=2;AF=0.545;AN=2;DP=731;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1835,172,0:0,0,27,31
chr1	38186844	.	C	G	242.02	PASS	AC=2;AF=0.545;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:412,36,0:0,0,4,8
chr1	38187099	.	CA	C	63.62	PASS	AC=2;AF=0.667;AN=2;DP=18;FS=0;MQ=60;set=variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:103,12,0:0,0,3,1
chr1	38187173	.	G	A	97.67	PASS	AC=2;AF=0.55;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:592,57,0:0,0,12,7
chr1	38187447	.	A	G	1328.34	PASS	AC=2;AF=0.55;AN=2;DP=2266;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:4498,307,0:0,0,60,39
chr1	38187453	.	G	A	1437.1	PASS	AC=2;AF=0.545;AN=2;DP=1251;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:4523,310,0:0,0,60,42
chr1	38187802	.	CA	C	954.03	PASS	AC=2;AF=0.545;AN=2;DP=1114;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,84:86:99:2349,201,0:1,1,53,31
chr1	38187879	.	C	T	1744.2	PASS	AC=2;AF=0.545;AN=2;DP=1836;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4436,434,0:0,0,73,72
chr1	38187989	.	T	C	1199.16	PASS	AC=2;AF=0.55;AN=2;DP=1748;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2780,254,0:0,0,27,58
chr1	38188029	.	A	G	630.79	PASS	AC=2;AF=0.545;AN=2;DP=582;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1950,159,0:0,0,13,40
chr1	38188195	.	A	G	43.49	PASS	AC=2;AF=0.6;AN=2;DP=90;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant11-variant14-variant16-variant19-variant20-variant21-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:299,27,0:0,0,2,7
chr1	38188253	.	T	G	199.35	PASS	AC=2;AF=0.625;AN=2;DP=111;FractionInformativeReads=1;MQ=60;set=variant6-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:506,45,0:0,0,7,8
chr1	38188604	.	C	T	1907.44	PASS	AC=2;AF=0.545;AN=2;DP=1918;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4108,422,0:0,0,77,65
chr1	38188697	.	T	C	1596.06	PASS	AC=2;AF=0.545;AN=2;DP=1519;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3808,347,0:0,0,49,67
chr1	38188740	.	C	T	1720.17	PASS	AC=2;AF=0.545;AN=2;DP=1504;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3907,362,0:0,0,52,69
chr1	38188768	.	C	T	2416.24	PASS	AC=2;AF=0.545;AN=2;DP=1539;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:5346,388,0:0,0,62,63
chr1	38188787	.	A	G	2331.26	PASS	AC=2;AF=0.545;AN=2;DP=1590;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:5016,352,0:0,0,58,59
chr1	38188880	.	C	T	2444.3	PASS	AC=2;AF=0.545;AN=2;DP=1950;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4289,444,0:0,0,75,74
chr1	38188934	.	T	C	2194.8	PASS	AC=2;AF=0.545;AN=2;DP=1985;MQ=60;set=variant10-variant12-variant16-variant19-variant20-variant25-variant26-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4784,460,0:0,0,72,82
chr1	38196841	.	T	C	339.25	PASS	AC=2;AF=0.574;AN=2;DP=957;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant29-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1266,114,0:0,0,26,12
chr1	38226761	.	T	A	611.98	PASS	AC=1;AF=0.622;AN=2;DP=1100;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,24:28:15:486,0,15:2,2,15,9
chr1	38226964	.	C	T	702	PASS	AC=1;AF=0.55;AN=2;DP=600;MQ=60;set=variant12-variant13-variant14-variant18-variant19-variant21-variant30-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:623,0,943:13,17,13,8
chr1	38228797	.	A	T	106.77	PASS	AC=2;AF=0.824;AN=2;DP=231;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,1,4
chr1	38230983	.	T	C	1041.23	PASS	AC=2;AF=0.875;AN=2;DP=1355;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1441,120,0:0,0,12,28
chr1	38260503	.	C	T	103.41	PASS	AC=1;AF=0.5;AN=2;DP=438;MQ=60;set=variant-variant3-variant5-variant9-variant16-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:279,0,317:2,8,1,8
chr1	38268918	.	T	C	484.69	PASS	AC=1;AF=0.629;AN=2;DP=1438;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:560,0,633:13,14,11,11
chr1	38275802	.	T	C	465.94	PASS	AC=1;AF=0.724;AN=2;DP=1312;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:471,0,498:11,11,11,10
chr1	38276381	.	C	T	4214.46	PASS	AC=2;AF=1;AN=2;DP=5765;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3403,338,0:0,0,63,50
chr1	38278579	.	C	T	225.77	PASS	AC=1;AF=0.5;AN=2;DP=571;MQ=60;set=variant-variant3-variant5-variant9-variant16-variant22-variant23-filterInvariant25-variant26-variant28-variant30-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:420,0,416:7,8,8,7
chr1	38278923	.	A	T	169.46	PASS	AC=1;AF=0.673;AN=2;DP=236;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant14-variant16-variant18-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:98:286,0,98:3,0,7,3
chr1	38279666	.	CTT	CT,C,CTTT	749.46	PASS	AC=0,0,1;AF=0.488,0.023,0.023;AN=2;DP=12266;set=variant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant8-variant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/3:206:99:42,79,29,56
chr1	38293992	.	C	T	1581.8	PASS	AC=2;AF=1;AN=2;DP=1652;FS=0;MQRankSum=0.933;ReadPosRankSum=-0.4;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1403,120,0:0,0,9,31
chr1	38301250	.	A	G	484.25	PASS	AC=1;AF=0.692;AN=2;DP=1903;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:317,0,551:15,7,9,7
chr1	38301476	.	G	A	607.48	PASS	AC=1;AF=0.697;AN=2;DP=1718;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,34:47:99:880,0,321:3,10,11,23
chr1	38323553	.	A	T	334.27	PASS	AC=1;AF=0.656;AN=2;DP=404;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:78:78,0,79:0,2,0,2
chr1	38325416	.	G	A,C	93.32	PASS	AC=0,1;AF=0.45,0.05;AN=2;DP=113;MQ=60;set=variant10-variant20-variant23-variant25-variant27-variant29-variant32-variant35-variant40-variant41	GT:DP:GQ:SB	0/2:12:59:1,2,4,5
chr1	38327982	.	G	T	1077.17	PASS	AC=1;AF=0.692;AN=2;DP=3423;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,38:93:99:889,0,1512:24,31,18,20
chr1	38332074	.	TCTCTCACA	T	404.07	PASS	AC=1;AF=0.545;AN=2;DP=1544;set=variant-variant6-variant7-variant10-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant24-variant28-variant29-variant30-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:370,0,814:14,9,13,5
chr1	38332078	.	T	A	1025.86	PASS	AC=1;AF=0.5;AN=2;DP=340;set=variant9-variant14-variant18-variant2-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,11:40:99:191,0,1221:21,8,10,1
chr1	38332109	.	G	C	706.63	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=0;FractionInformativeReads=0.958;MQ=59.75;MQRankSum=-2.416;QD=9.95;ReadPosRankSum=-1.151;SOR=0.563;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,20:68:99:735,0,1941:28,20,11,9
chr1	38332110	.	AG	A	730.55	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=0;FractionInformativeReads=0.958;MQ=59.75;MQRankSum=-2.549;QD=10.29;ReadPosRankSum=-1.606;SOR=0.752;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,21:68:99:768,0,2064:26,21,12,9
chr1	38332112	.	CTG	C	781.45	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=0;FractionInformativeReads=0.961;MQ=59.77;MQRankSum=-0.655;QD=10.28;ReadPosRankSum=-1.328;SOR=0.671;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,22:73:99:819,0,2070:28,23,12,10
chr1	38334317	.	T	A	955.29	PASS	AC=1;AF=0.5;AN=2;DP=805;MQ=60;set=variant-variant3-variant5-variant9-variant16-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:861,0,1452:10,18,6,17
chr1	38334318	.	C	A	955.29	PASS	AC=1;AF=0.5;AN=2;DP=790;MQ=60;set=variant-variant3-variant5-variant9-variant16-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:861,0,1452:10,17,5,17
chr1	38338795	.	A	G	1733.34	PASS	AC=1;AF=0.692;AN=2;DP=4592;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,45:112:99:1068,0,1780:27,40,19,26
chr1	38345896	.	A	C	331.48	PASS	AC=1;AF=0.697;AN=2;DP=859;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:212,0,382:4,8,2,6
chr1	38352849	.	G	C	619.92	PASS	AC=1;AF=0.697;AN=2;DP=1631;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:603,0,786:10,20,7,15
chr1	38397370	.	G	A	1431.75	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=2.348;FractionInformativeReads=1;MQ=60;MQRankSum=-0.576;QD=11.74;ReadPosRankSum=-0.792;SOR=0.969;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,55:122:99:1460,0,2036:36,31,33,22
chr1	38397821	.	C	T	263.4	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=3.274;FractionInformativeReads=1;MQ=60;MQRankSum=-1.01;QD=15.49;ReadPosRankSum=-0.241;SOR=0.148;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:292,0,348:0,9,1,7
chr1	38409635	.	G	A	666.11	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.29;QD=16.65;ReadPosRankSum=-1.091;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:694,0,441:5,11,7,17
chr1	38411444	.	C	T	1791.84	PASS	AC=1;AF=0.5;AN=2;DP=163;FS=2.743;FractionInformativeReads=1;MQ=60;MQRankSum=-0.085;QD=10.99;ReadPosRankSum=0.958;SOR=0.613;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:89,74:163:99:1820,0,2287:48,41,36,38
chr1	38412048	.	T	C	329.92	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.353;QD=9.16;ReadPosRankSum=-1.091;SOR=0.792;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:358,0,563:9,12,6,9
chr1	38422571	.	T	C	606.22	PASS	AC=2;AF=0.921;AN=2;DP=340;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:39:541,39,0:0,0,8,3
chr1	38422593	.	T	C	66.22	PASS	AC=2;AF=1;AN=2;DP=574;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:722,54,0:0,0,13,5
chr1	38423588	.	G	A	587.74	PASS	AC=2;AF=0.909;AN=2;DP=1296;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:736,66,0:0,0,8,14
chr1	38423853	.	G	C	459.74	PASS	AC=2;AF=0.909;AN=2;DP=863;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:750,60,0:0,0,17,3
chr1	38424014	.	C	T	531.77	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=0.934;FractionInformativeReads=1;MQ=60;MQRankSum=-1.593;QD=7.49;ReadPosRankSum=-2.214;SOR=0.811;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,26:71:99:560,0,1077:23,22,12,14
chr1	38425724	.	T	C	4173.76	PASS	AC=2;AF=0.909;AN=2;DP=5769;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:4167,381,0:0,0,80,47
chr1	38425895	.	T	C	2299.84	PASS	AC=2;AF=0.909;AN=2;DP=3945;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3251,299,0:0,0,32,68
chr1	38433762	.	G	A	548.84	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=1.026;FractionInformativeReads=1;MQ=60;MQRankSum=-0.486;QD=9.3;ReadPosRankSum=0.903;SOR=0.49;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,24:59:99:577,0,857:21,14,13,11
chr1	38442547	.	G	A	3662.97	PASS	AC=2;AF=0.909;AN=2;DP=3833;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2345,242,0:0,0,37,44
chr1	38444749	.	T	C	366.76	PASS	AC=1;AF=0.677;AN=2;DP=1188;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,20:49:99:552,0,747:12,17,7,13
chr1	38447615	.	G	T	766.07	PASS	AC=1;AF=0.886;AN=2;DP=854;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:228,0,316:1,8,2,7
chr1	38449910	.	T	C	1486.77	PASS	AC=1;AF=0.6;AN=2;DP=1924;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant28-variant29-variant30-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,45:85:99:1162,0,887:23,17,27,18
chr1	38450367	.	A	G	2078.22	PASS	AC=2;AF=0.909;AN=2;DP=3383;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2374,242,0:0,0,39,42
chr1	38453576	.	A	C	673.86	PASS	AC=1;AF=0.615;AN=2;DP=2917;MQ=60;set=variant-variant2-variant6-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,52:113:99:1226,0,1525:25,36,26,26
chr1	38455389	.	C	T	531.12	PASS	AC=1;AF=0.898;AN=2;DP=1311;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:299,0,474:7,11,5,7
chr1	38455497	.	A	G	190.38	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=5.237;FractionInformativeReads=1;MQ=60;MQRankSum=-1.247;QD=11.9;ReadPosRankSum=-1.247;SOR=0.105;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:219,0,392:8,2,3,3
chr1	38456081	.	C	T	372.87	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=3.18;FractionInformativeReads=1;MQ=60;MQRankSum=1.702;QD=9.81;ReadPosRankSum=3.166;SOR=0.269;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:401,0,855:6,17,6,9
chr1	38456106	.	G	A	334.35	PASS	AC=1;AF=0.677;AN=2;DP=1002;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:461,0,514:6,8,5,11
chr1	38456188	.	C	T	82.52	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=3.68;FractionInformativeReads=1;MQ=60;MQRankSum=0.55;QD=11.79;ReadPosRankSum=-0.55;SOR=2.833;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:78:111,0,78:2,2,0,3
chr1	38462898	.	T	A	1165.33	PASS	AC=2;AF=0.966;AN=2;DP=1648;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:1034,72,0:0,0,13,11
chr1	38462905	.	C	G	1088.54	PASS	AC=2;AF=0.966;AN=2;DP=1703;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1068,75,0:0,0,14,11
chr1	38463504	.	C	T	1385.34	PASS	AC=1;AF=0.667;AN=2;DP=5214;set=variant-variant2-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,101:188:99:2638,0,2198:42,45,54,47
chr1	38463944	.	C	T	358.34	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=1.288;FractionInformativeReads=1;MQ=60;MQRankSum=0.594;QD=9.68;ReadPosRankSum=-0.259;SOR=1.061;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:387,0,412:10,10,7,10
chr1	38464639	.	C	G	1488.91	PASS	AC=2;AF=1;AN=2;DP=5007;FS=0;MQ=60;MQRankSum=1.272;ReadPosRankSum=1.678;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3024,311,0:0,0,60,44
chr1	38464670	.	C	T	1089.7	PASS	AC=1;AF=0.5;AN=2;DP=123;FS=0.688;FractionInformativeReads=0.992;MQ=60;MQRankSum=1.433;QD=8.86;ReadPosRankSum=-1.744;SOR=0.585;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,51:122:99:1118,0,1819:41,30,28,23
chr1	38478925	.	TG	T	176.16	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.473;QD=11.01;ReadPosRankSum=-0.158;SOR=1.371;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:213,0,209:2,6,1,7
chr1	38485115	.	G	GT	100.22	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=3.31;FractionInformativeReads=0.577;MQ=60;MQRankSum=0.637;QD=3.85;ReadPosRankSum=0.637;SOR=0.141;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:137,0,132:0,8,1,6
chr1	38510267	.	GTT	GT,GTTT,G	58.56	PASS	AC=1,0,0;AF=0.44,0.04,0.06;AN=2;DP=534;set=variant-variant5-variant7-variant8-filterInvariant10-filterInvariant12-variant16-variant17-variant19-variant20-variant21-filterInvariant22-variant23-variant25-variant26-variant28-filterInvariant29-variant30-variant32-variant33-variant37-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:12:30:1,3,2,6
chr1	38554876	.	TG	T	995.12	PASS	AC=1;AF=0.5;AN=2;DP=193;MQ=60;set=variant26-variant30-variant34-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,23:36:99:945,0,933:13,0,18,5
chr1	38554879	.	G	T	1004.18	PASS	AC=1;AF=0.5;AN=2;DP=200;FractionInformativeReads=1;MQ=60;set=variant26-variant30-variant34-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,24:38:99:945,0,933:13,1,18,6
chr1	38555026	.	C	T	1914.99	PASS	AC=1;AF=0.5;AN=2;DP=800;MQ=60;set=variant26-variant30-variant34-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,63:125:99:1484,0,1592:28,34,28,35
chr1	38555083	.	T	C	1267.94	PASS	AC=1;AF=0.5;AN=2;DP=925;set=variant8-variant11-variant22-variant26-variant30-variant33-variant34-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,42:90:99:994,0,1236:18,30,15,27
chr1	39303995	.	C	T	1542.77	PASS	AC=2;AF=0.955;AN=2;DP=1989;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1843,153,0:0,0,32,19
chr1	39304247	.	A	G	5356.38	PASS	AC=2;AF=0.955;AN=2;DP=6253;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4168,406,0:0,0,55,81
chr1	39304728	.	A	G	3094.07	PASS	AC=2;AF=0.955;AN=2;DP=4556;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3847,336,0:0,0,79,33
chr1	39305002	.	AT	A,ATTT,ATT	624.88	PASS	AC=0,0,1;AF=0.464,0.012,0.036;AN=2;DP=6270;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:94:99:17,33,14,30
chr1	39311617	.	T	G	886.19	PASS	AC=1;AF=0.5;AN=2;DP=244;FractionInformativeReads=1;MQ=60;set=variant2-variant14-variant23-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,29:73:99:779,0,1184:30,14,21,8
chr1	39329700	.	G	T	228.55	PASS	AC=1;AF=0.531;AN=2;DP=780;MQ=60;set=variant2-variant4-variant10-variant15-variant16-variant18-variant19-variant24-variant27-variant32-variant34-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:735,0,685:10,14,12,17
chr1	39329857	.	A	G	398.22	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.535;QD=17.31;ReadPosRankSum=0.22;SOR=0.948;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:426,0,292:6,3,10,4
chr1	39339998	.	A	AT	99.87	PASS	AC=1;AF=0.667;AN=2;DP=86;MQ=60;set=variant15-variant16-variant24-variant32-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:82:82,0,157:4,0,4,0
chr1	39340001	.	T	TA	41.76	PASS	AC=1;AF=0.696;AN=2;DP=215;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant16-variant21-variant22-variant23-variant25-variant28-variant29-variant31-variant33-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:127,0,113:4,0,4,0
chr1	39340504	.	T	G	1106.34	PASS	AC=1;AF=0.5;AN=2;DP=709;MQ=60;set=variant2-variant12-variant14-variant23-variant28-variant30-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,41:98:99:969,0,1567:27,30,19,22
chr1	39351659	.	G	A	1504.89	PASS	AC=2;AF=0.955;AN=2;DP=2462;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1497,144,0:0,0,14,34
chr1	39385086	.	A	C	1198.23	PASS	AC=2;AF=0.932;AN=2;DP=2093;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1137,108,0:0,0,12,24
chr1	39391986	.	G	C	1187.37	PASS	AC=1;AF=0.769;AN=2;DP=3716;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,59:100:99:1717,0,994:24,17,40,19
chr1	39457006	.	C	T	268.86	PASS	AC=2;AF=0.625;AN=2;DP=1003;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:71:604,71,0:0,0,12,12
chr1	39466955	.	CTTT	CTT,C,CT,CTTTTT	73.48	PASS	AC=0,0,1,0;AF=0.326,0.043,0.261,0.022;AN=2;DP=401;set=variant-variant3-variant6-variant8-variant15-variant17-variant18-filterInvariant19-variant20-variant23-variant24-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/3:4:19:0,1,0,3
chr1	39470364	.	A	G	2982.29	PASS	AC=2;AF=0.625;AN=2;DP=4808;MQ=60;set=variant2-variant3-variant4-variant8-variant12-variant15-variant17-variant18-variant19-variant20-variant22-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5937,560,0:0,0,73,114
chr1	39491927	.	G	C	1370.53	PASS	AC=2;AF=0.884;AN=2;DP=1777;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1817,150,0:0,0,38,12
chr1	39492080	.	G	T	2869.37	PASS	AC=2;AF=0.884;AN=2;DP=5018;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3343,310,0:0,0,41,63
chr1	39494666	.	CT	CTT,C	447.36	PASS	AC=1,0;AF=0.489,0.023;AN=2;DP=3408;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:52:99:11,15,6,20
chr1	39494687	.	G	A	1495.35	PASS	AC=2;AF=0.895;AN=2;DP=1896;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1593,128,0:0,0,8,35
chr1	39494760	.	G	A	505.31	PASS	AC=2;AF=0.895;AN=2;DP=529;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:690,48,0:0,0,0,16
chr1	39550210	.	C	T	449.67	PASS	AC=1;AF=0.966;AN=2;DP=829;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,22:35:99:795,0,419:4,9,3,19
chr1	39568765	.	T	C	14504.3	PASS	AC=1;AF=0.692;AN=2;DP=14206;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:189,170:359:99:4066,0,4659:103,86,95,75
chr1	39569459	.	C	A	469.86	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=3.388;FractionInformativeReads=1;MQ=60;MQRankSum=-0.927;QD=19.58;ReadPosRankSum=-1.564;SOR=2.012;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:498,0,385:1,10,0,13
chr1	39571147	.	C	T	500.06	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=1.081;FractionInformativeReads=1;MQ=60;MQRankSum=2.569;QD=8.33;ReadPosRankSum=-1.572;SOR=0.497;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,22:60:99:528,0,988:26,12,14,8
chr1	39571211	.	T	C	1319.6	PASS	AC=1;AF=0.629;AN=2;DP=3407;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,30:91:99:675,0,1546:41,20,18,12
chr1	39717566	.	T	C	1582.63	PASS	AC=2;AF=0.989;AN=2;DP=2304;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2041,197,0:0,0,25,41
chr1	39748128	.	T	C	675.41	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.489;QD=10.55;ReadPosRankSum=0.313;SOR=0.804;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,27:64:99:704,0,918:12,25,8,19
chr1	39748921	.	G	A	746.2	PASS	AC=1;AF=0.744;AN=2;DP=3198;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,46:80:99:1154,0,752:18,16,28,18
chr1	39750198	.	A	G	202.38	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0;QD=13.49;ReadPosRankSum=0.209;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:231,0,229:1,6,2,6
chr1	39758993	.	C	G	85.48	PASS	AC=2;AF=0.778;AN=2;DP=300;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:638,54,0:0,0,13,5
chr1	39763242	.	G	A	2129.81	PASS	AC=1;AF=0.744;AN=2;DP=5544;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,63:128:99:1682,0,1691:38,27,41,22
chr1	39766055	.	C	T	796.96	PASS	AC=1;AF=0.744;AN=2;DP=2530;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,36:68:99:1077,0,901:8,24,10,26
chr1	39782993	.	G	A	810.92	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.059;QD=12.48;ReadPosRankSum=0.768;SOR=0.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:839,0,822:13,20,13,19
chr1	39783025	.	A	T	533.25	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.726;QD=11.59;ReadPosRankSum=-0.187;SOR=0.582;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:561,0,688:7,17,7,15
chr1	39783105	.	C	T	193.42	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.237;QD=12.89;ReadPosRankSum=-0.059;SOR=1.23;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:222,0,304:1,8,0,6
chr1	39788194	.	C	T	769.81	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=14.193;FractionInformativeReads=1;MQ=60;MQRankSum=0.273;QD=19.25;ReadPosRankSum=-0.03;SOR=0.023;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,29:40:99:798,0,353:11,0,19,10
chr1	39790505	.	C	T	1326.1	PASS	AC=1;AF=0.5;AN=2;DP=131;FS=0.646;FractionInformativeReads=1;MQ=60;MQRankSum=0.007;QD=10.12;ReadPosRankSum=-2.416;SOR=0.76;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:74,57:131:99:1354,0,1779:35,39,26,31
chr1	39796844	.	CTTTTTTTTTTTTTT	CT,CTTT,CTT,C,CTTTTTTTTTTTTT,CTTTT,CTTTTTTTTTTT	141.85	PASS	AC=0,1,0,0,0,0,0;AF=0.013,0.526,0.145,0.013,0.013,0.013,0.013;AN=2;DP=886;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:18:99:5,1,6,6
chr1	39797756	.	A	G	1223.06	PASS	AC=1;AF=0.5;AN=2;DP=88;FS=2.752;FractionInformativeReads=1;MQ=60;MQRankSum=-0.029;QD=13.9;ReadPosRankSum=-1.55;SOR=0.827;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,42:88:99:1251,0,1357:24,22,19,23
chr1	39798767	.	A	G	1440.89	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.688;QD=13.1;ReadPosRankSum=-0.939;SOR=0.706;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,53:110:99:1469,0,1482:31,26,29,24
chr1	39800299	.	C	T	1367.11	PASS	AC=1;AF=0.5;AN=2;DP=88;FS=0.814;FractionInformativeReads=1;MQ=60;MQRankSum=-0.434;QD=15.54;ReadPosRankSum=1.024;SOR=0.556;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,50:88:99:1395,0,1136:22,16,27,23
chr1	39806610	.	C	T	1177.16	PASS	AC=2;AF=0.989;AN=2;DP=1861;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1137,111,0:0,0,15,22
chr1	39812620	.	G	T	2437.41	PASS	AC=2;AF=0.989;AN=2;DP=3767;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2539,236,0:0,0,50,29
chr1	39812822	.	C	A	4165.75	PASS	AC=2;AF=0.989;AN=2;DP=5628;MQ=60;MQRankSum=-0.751;ReadPosRankSum=-1.057;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3893,367,0:0,0,52,71
chr1	39824718	.	C	G	106.42	PASS	AC=1;AF=0.6;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,248:5,1,3,0
chr1	39826419	.	T	C	550.31	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=15.167;FractionInformativeReads=1;MQ=60;MQRankSum=0.481;QD=15.29;ReadPosRankSum=-1.187;SOR=0.02;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:579,0,516:15,0,15,6
chr1	39843958	.	G	A	305.06	PASS	AC=1;AF=0.6;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:543,0,430:12,1,14,5
chr1	39878567	.	C	G	1512.68	PASS	AC=1;AF=0.5;AN=2;DP=120;FS=4.336;FractionInformativeReads=1;MQ=60;MQRankSum=-1.442;QD=12.61;ReadPosRankSum=1.415;SOR=0.821;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,58:120:99:1541,0,1538:33,29,26,32
chr1	39879366	.	T	C	408.98	PASS	AC=1;AF=0.609;AN=2;DP=996;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,32:51:99:1010,0,508:9,10,11,21
chr1	39880013	.	T	C	1290.71	PASS	AC=1;AF=0.5;AN=2;DP=121;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.563;QD=10.67;ReadPosRankSum=-0.238;SOR=0.74;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:69,52:121:99:1319,0,1863:34,35,25,27
chr1	39880818	.	G	A	5446.67	PASS	AC=1;AF=0.5;AN=2;DP=371;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.654;QD=14.68;ReadPosRankSum=1.709;SOR=0.698;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:169,202:371:99:5475,0,4234:78,91,93,109
chr1	39881040	.	G	C	1143.65	PASS	AC=1;AF=0.6;AN=2;DP=1350;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,32:55:99:1013,0,725:2,21,6,26
chr1	39889677	.	G	A	698.91	PASS	AC=1;AF=0.6;AN=2;DP=1051;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:720,0,649:16,12,18,11
chr1	39893223	.	T	G	1013.12	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=0.816;FractionInformativeReads=1;MQ=60;MQRankSum=1.61;QD=11.65;ReadPosRankSum=-1.996;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,37:87:99:1041,0,1279:25,25,20,17
chr1	39893584	.	T	C	507.39	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=3.333;FractionInformativeReads=1;MQ=60;MQRankSum=0.606;QD=13.01;ReadPosRankSum=0.042;SOR=1.402;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:536,0,575:15,6,15,3
chr1	39894839	.	A	G	329.56	PASS	AC=2;AF=0.779;AN=2;DP=681;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:627,48,0:0,0,14,2
chr1	39895460	.	G	A	631.1	PASS	AC=1;AF=0.6;AN=2;DP=1436;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant34-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:452,0,624:15,10,11,9
chr1	39898644	.	A	G	792.65	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1;QD=9.33;ReadPosRankSum=-0.379;SOR=0.711;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,31:85:99:821,0,1615:31,23,18,13
chr1	39900058	.	CT	C,CTT	102.62	PASS	AC=1,0;AF=0.469,0.031;AN=2;DP=1230;set=variant2-filterInvariant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-filterInvariant15-variant16-filterInvariant19-variant20-variant21-filterInvariant23-variant24-variant26-variant29-variant30-variant31-filterInvariant32-filterInvariant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:36:99:11,5,12,8
chr1	39900230	.	C	T	1261.89	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=0.755;FractionInformativeReads=1;MQ=60;MQRankSum=0.017;QD=12.49;ReadPosRankSum=-0.743;SOR=0.587;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,57:101:99:1290,0,1080:18,26,25,32
chr1	39903185	.	T	C	390.89	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=3.222;FractionInformativeReads=1;MQ=60;MQRankSum=-1.707;QD=17.77;ReadPosRankSum=1.379;SOR=2.636;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:419,0,355:9,2,11,0
chr1	39908035	.	C	G	1128.68	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=0.752;FractionInformativeReads=1;MQ=60;MQRankSum=-1.467;QD=11.4;ReadPosRankSum=-0.401;SOR=0.61;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,41:99:99:1157,0,1589:27,31,20,21
chr1	39908430	.	A	C	650.52	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=2.161;FractionInformativeReads=1;MQ=60;MQRankSum=0.036;QD=10.49;ReadPosRankSum=-2.565;SOR=0.998;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,24:62:99:679,0,931:21,17,15,9
chr1	39914363	.	G	C	1108.19	PASS	AC=1;AF=0.662;AN=2;DP=3940;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,52:120:99:1018,0,1530:32,36,24,28
chr1	39927491	.	T	A	293.77	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=2.246;FractionInformativeReads=0.96;MQ=59.7;MQRankSum=-2.086;QD=11.75;ReadPosRankSum=-2.897;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:322,0,308:10,3,10,1
chr1	39927507	.	G	A	1786.71	PASS	AC=2;AF=0.989;AN=2;DP=1503;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1330,107,0:0,0,29,7
chr1	39929240	.	T	C	767.23	PASS	AC=2;AF=0.756;AN=2;DP=3137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2731,267,0:0,0,55,34
chr1	39950377	.	C	T	1065.08	PASS	AC=1;AF=0.5;AN=2;DP=93;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.427;QD=11.45;ReadPosRankSum=-1.489;SOR=0.761;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,44:93:99:1093,0,1311:27,22,25,19
chr1	39952822	.	T	C	1517.75	PASS	AC=1;AF=0.909;AN=2;DP=3551;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,41:72:99:1176,0,857:8,23,11,30
chr1	39957301	.	G	A	755.74	PASS	AC=1;AF=0.73;AN=2;DP=3118;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,36:77:99:867,0,1080:27,14,23,13
chr1	39957913	.	A	G	7354.32	PASS	AC=1;AF=0.909;AN=2;DP=20590;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:201,205:406:99:4941,0,4640:106,95,107,98
chr1	39958080	.	C	G	3480.67	PASS	AC=1;AF=0.73;AN=2;DP=6636;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,68:160:99:1717,0,2524:35,57,24,44
chr1	39977348	.	C	A	136.66	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=1;MQ=28.12;MQRankSum=-1.067;QD=3.11;ReadPosRankSum=0.329;SOR=0.582;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:32,12:44:99:165,0,676:15,17,6,6
chr1	39980582	.	A	T	88.48	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=39;MQRankSum=-0.387;QD=8.04;ReadPosRankSum=1.031;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:117,0,161:4,2,4,1
chr1	39986904	.	A	T	236.97	DRAGENHardSNP	AC=1;AF=0.722;AN=2;DP=272;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:333,0,334:11,4,11,4
chr1	39988084	.	G	A	417.76	PASS	AC=1;AF=0.588;AN=2;DP=1881;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:719,0,972:21,11,20,7
chr1	39988318	.	T	TTTG	67.06	PASS	AC=1;AF=0.588;AN=2;DP=1124;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:312,0,320:2,6,2,7
chr1	40029679	.	C	T	672.86	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=1.059;FractionInformativeReads=1;MQ=60;MQRankSum=-0.19;QD=11.4;ReadPosRankSum=0.479;SOR=0.904;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:701,0,905:11,21,8,19
chr1	40089945	.	A	G	1432.26	PASS	AC=2;AF=0.652;AN=2;DP=2099;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1564,159,0:0,0,29,24
chr1	40090805	.	C	G	815.41	PASS	AC=1;AF=0.5;AN=2;DP=263;FractionInformativeReads=1;MQ=60;set=variant16-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,38:67:99:990,0,826:12,17,17,21
chr1	40091119	.	A	G	1616.55	PASS	AC=1;AF=0.556;AN=2;DP=1159;MQ=60;set=variant2-variant4-variant9-variant10-variant12-variant15-variant17-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,56:133:99:1354,0,2015:37,40,27,29
chr1	40091660	.	TC	T	1535.74	PASS	AC=1;AF=0.5;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant16-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,60:115:99:1784,0,1600:27,28,31,29
chr1	40092089	.	T	C	2863.67	PASS	AC=2;AF=0.989;AN=2;DP=4372;MQ=60;MQRankSum=-2.503;ReadPosRankSum=0.928;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3206,305,0:0,0,56,46
chr1	40096053	.	T	C	606.18	PASS	AC=2;AF=0.591;AN=2;DP=960;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant10-variant11-variant12-variant15-variant16-variant18-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1300,114,0:0,0,10,28
chr1	40098328	.	T	C	1444.18	PASS	AC=2;AF=0.989;AN=2;DP=2433;FractionInformativeReads=1;MQ=60;MQRankSum=0.56;ReadPosRankSum=0.56;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1553,150,0:0,0,26,24
chr1	40105644	.	G	GC	144.79	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.485;QD=10.34;ReadPosRankSum=-0.065;SOR=0.804;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:182,0,257:3,5,2,4
chr1	40128968	.	C	T	2574.08	PASS	AC=1;AF=0.5;AN=2;DP=241;FS=2.905;FractionInformativeReads=1;MQ=60;MQRankSum=-0.437;QD=10.68;ReadPosRankSum=-0.289;SOR=0.519;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:125,116:241:99:2602,0,3187:77,48,66,50
chr1	40137754	.	G	A	889.98	PASS	AC=1;AF=0.577;AN=2;DP=1089;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant16-variant21-variant32-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,51:74:99:2000,0,1449:1,22,11,40
chr1	40137759	.	G	C	1928.69	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=12.736;FractionInformativeReads=1;MQ=60;MQRankSum=-0.213;QD=30.61;ReadPosRankSum=0.403;SOR=0.04;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,47:63:99:1957,0,1277:0,16,10,37
chr1	40144301	.	G	C	229.53	PASS	AC=1;AF=0.531;AN=2;DP=509;MQ=60;set=variant3-variant5-variant11-variant12-variant15-variant18-variant20-variant24-variant25-variant26-variant27-variant29-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,23:30:99:657,0,185:4,3,16,7
chr1	40144486	.	A	C	2389.69	PASS	AC=1;AF=0.611;AN=2;DP=3398;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,26:83:99:564,0,1390:29,28,12,14
chr1	40144818	.	A	T	3252.9	PASS	AC=1;AF=0.558;AN=2;DP=4529;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,74:156:99:1807,0,2068:33,49,33,41
chr1	40144857	.	G	GCTTCTTCT	4158.03	PASS	AC=1;AF=0.611;AN=2;DP=4140;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,36:73:99:1521,0,1405:20,17,17,19
chr1	40145297	.	C	T	3525.94	PASS	AC=1;AF=0.611;AN=2;DP=3927;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,48:90:99:1511,0,1247:12,30,13,35
chr1	40146253	.	T	C	1639.83	PASS	AC=2;AF=0.869;AN=2;DP=2816;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2516,234,0:0,0,38,40
chr1	40146417	.	G	T	1700.31	PASS	AC=1;AF=0.611;AN=2;DP=1968;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,32:62:99:722,0,739:15,15,15,17
chr1	40147343	.	G	T	1236.54	PASS	AC=1;AF=0.614;AN=2;DP=1687;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,17:51:99:403,0,867:21,13,9,8
chr1	40147926	.	C	T	874.45	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.586;QD=17.85;ReadPosRankSum=-2.335;SOR=0.76;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,33:49:99:903,0,399:9,7,19,14
chr1	40149515	.	A	G	1113.36	PASS	AC=2;AF=0.869;AN=2;DP=1838;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2201,189,0:0,0,48,15
chr1	40149551	.	G	C	2772.71	PASS	AC=1;AF=0.607;AN=2;DP=2256;MQ=60;set=variant2-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,41:87:99:1237,0,1161:30,16,30,11
chr1	40149642	.	G	T	7388.87	PASS	AC=2;AF=0.869;AN=2;DP=10205;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,236:236:99:7285,705,0:0,0,135,101
chr1	40149870	.	C	G	1773.06	PASS	AC=2;AF=0.869;AN=2;DP=2625;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,61:63:99:2351,166,0:2,0,7,54
chr1	40149875	.	C	T	1505.94	PASS	AC=1;AF=0.558;AN=2;DP=1605;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,30:49:99:1002,0,616:0,19,2,28
chr1	40149926	.	C	CCCCGGGTGCCTCGCCTCCTCCCAT	328.6	PASS	AC=2;AF=0.897;AN=2;DP=748;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:37:539,37,0:0,0,0,11
chr1	40149971	.	G	A	174	PASS	AC=1;AF=0.688;AN=2;DP=219;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant31-variant33-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:64:64,0,78:0,3,1,1
chr1	40150156	.	G	A	1136.67	PASS	AC=1;AF=0.558;AN=2;DP=1732;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,27:53:99:644,0,723:11,15,16,11
chr1	40150370	.	C	T	1365.71	PASS	AC=2;AF=0.869;AN=2;DP=1720;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1267,125,0:0,0,16,26
chr1	40204424	.	A	T	962.65	PASS	AC=1;AF=0.658;AN=2;DP=348;MQ=60;set=variant3-variant12-variant16-variant18-variant20-variant21-variant24-variant25-variant27-variant29-variant31-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:178,0,440:11,0,4,2
chr1	40207169	.	T	G	973.03	PASS	AC=1;AF=0.786;AN=2;DP=2639;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,41:80:99:1024,0,1034:13,26,15,26
chr1	40214525	.	T	A	2356.85	PASS	AC=1;AF=0.65;AN=2;DP=1223;MQ=60;set=variant3-variant12-variant14-variant16-variant18-variant20-variant21-variant24-variant25-variant27-variant29-variant31-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,51:84:99:1398,0,751:22,11,33,18
chr1	40219065	.	C	T	4491.72	PASS	AC=1;AF=0.658;AN=2;DP=2222;MQ=60;set=variant3-variant12-variant14-variant16-variant18-variant20-variant21-variant24-variant25-variant27-variant29-variant31-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,57:116:99:1473,0,1468:27,32,24,33
chr1	40219280	.	T	C	2099.49	PASS	AC=1;AF=0.708;AN=2;DP=1178;MQ=60;set=variant3-variant5-variant9-variant12-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:808,0,556:7,13,12,14
chr1	40226046	.	G	A	8883.22	PASS	AC=1;AF=0.658;AN=2;DP=4696;MQ=60;set=variant3-variant12-variant14-variant16-variant18-variant20-variant21-variant24-variant25-variant27-variant29-variant31-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:105,110:215:99:2896,0,2554:53,52,55,55
chr1	40228654	.	CCT	C	2380.7	PASS	AC=1;AF=0.5;AN=2;DP=272;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:65,66:131:99:2541,0,2838:34,31,43,23
chr1	40229297	.	A	AC	961.21	PASS	AC=1;AF=0.818;AN=2;DP=1598;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,14:53:99:339,0,1230:26,13,10,4
chr1	40229319	.	G	A	966.62	PASS	AC=1;AF=0.783;AN=2;DP=1839;set=variant-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant29-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,18:61:99:369,0,1107:25,18,12,6
chr1	40229368	.	A	G	1853.31	PASS	AC=1;AF=0.763;AN=2;DP=988;set=variant3-variant12-variant14-variant16-variant18-variant20-variant21-variant24-variant25-variant27-variant29-variant31-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,24:76:99:541,0,1283:26,26,14,10
chr1	40230336	.	C	G	1746.8	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=12723;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:234,263:497:99:5297,0,4496:130,104,151,112
chr1	40236074	.	A	C	1147.41	PASS	AC=1;AF=0.577;AN=2;DP=5320;set=variant-variant5-variant7-variant9-filterInvariant10-variant11-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,74:202:99:1801,0,2907:68,60,50,24
chr1	40253726	.	C	T	1507.47	PASS	AC=2;AF=0.652;AN=2;DP=3654;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3963,323,0:0,0,91,17
chr1	40253768	.	C	CA	5320.45	PASS	AC=2;AF=0.712;AN=2;DP=7648;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,213:213:99:10017,671,0:0,0,139,74
chr1	40253770	.	C	T	5363.87	PASS	AC=2;AF=0.712;AN=2;DP=7909;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,223:223:99:10247,689,0:0,0,144,79
chr1	40253786	.	C	T	6004.05	PASS	AC=2;AF=0.712;AN=2;DP=9935;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,287:287:99:12572,875,0:0,0,176,111
chr1	40253810	.	GC	G	8459.3	PASS	AC=1;AF=0.5;AN=2;DP=3407;set=variant5-variant10-variant24-variant26-variant28-variant29-variant32-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:176,197:373:99:7776,0,6752:96,80,116,81
chr1	40253812	.	G	A	8468.32	PASS	AC=1;AF=0.5;AN=2;DP=3452;FractionInformativeReads=1;set=variant5-variant10-variant24-variant26-variant28-variant29-variant32-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:176,198:374:99:7776,0,6752:96,80,117,81
chr1	40254231	.	A	G	145.15	PASS	AC=2;AF=0.7;AN=2;DP=84;FractionInformativeReads=1;MQ=60;set=variant3-variant12-variant16-variant18-variant25-variant27-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:84,6,0:0,0,1,1
chr1	40254358	.	G	C	536.24	PASS	AC=1;AF=0.5;AN=2;DP=123;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,24:72:99:491,0,1231:32,16,16,8
chr1	40254522	.	G	A	417.84	PASS	AC=2;AF=0.814;AN=2;DP=2635;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2404,242,0:0,0,30,51
chr1	40306898	.	T	C	1511.91	PASS	AC=2;AF=0.66;AN=2;DP=1205;MQ=60;set=variant4-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1776,165,0:0,0,36,19
chr1	40315888	.	A	T	771.27	PASS	AC=2;AF=0.571;AN=2;DP=477;MQ=60;set=variant6-variant10-variant20-variant22-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1901,183,0:0,0,29,32
chr1	40319587	.	A	C	2902.21	PASS	AC=2;AF=0.667;AN=2;DP=2746;MQ=60;set=variant4-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2649,272,0:0,0,51,40
chr1	40349131	.	G	A	3786.57	PASS	AC=2;AF=0.66;AN=2;DP=2359;MQ=60;set=variant4-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2414,258,0:0,0,38,49
chr1	40349410	.	T	C	376.77	PASS	AC=2;AF=0.761;AN=2;DP=164;MQ=60;set=variant4-variant5-variant6-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant21-variant23-variant25-variant27-variant29-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:177,12,0:0,0,0,4
chr1	40361700	.	T	A	968.94	PASS	AC=1;AF=0.5;AN=2;DP=348;MQ=60;set=variant6-variant20-variant22-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,48:97:99:1299,0,1250:17,32,20,28
chr1	40363054	.	G	C	4297.35	PASS	AC=2;AF=0.909;AN=2;DP=5869;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4084,402,0:0,0,68,66
chr1	40363759	.	TTAGATATA	T	1034.82	PASS	AC=1;AF=0.667;AN=2;DP=57;FS=0;MQ=60;set=variant10-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:432,0,896:2,8,3,8
chr1	40365437	.	A	AT	2901.18	PASS	AC=1;AF=0.5;AN=2;DP=1306;MQ=60;set=variant6-variant20-variant22-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,86:232:99:1981,0,3866:70,76,42,44
chr1	40367592	.	A	G	4027.89	PASS	AC=2;AF=0.966;AN=2;DP=4593;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2625,276,0:0,0,51,42
chr1	40367598	.	G	GCCC,GC,GCC,GCCCC	1857.34	PASS	AC=0,1,0,0;AF=0.375,0.125,0.042,0.042;AN=2;DP=1144;MQ=60;set=variant4-variant10-variant14-variant15-variant16-variant25-variant26-variant27-variant30-variant34-variant36-variant41	GT:DP:GQ:SB	0/2:93:99:22,22,29,20
chr1	40367625	.	G	T	1468.67	PASS	AC=1;AF=0.5;AN=2;DP=329;MQ=60;set=variant10-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,52:104:99:990,0,1262:26,26,26,26
chr1	40431727	.	A	G	1024.59	PASS	AC=1;AF=0.5;AN=2;DP=274;FractionInformativeReads=1;MQ=60;set=variant10-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,51:98:99:1346,0,988:23,24,23,28
chr1	40432529	.	C	T	722.81	PASS	AC=1;AF=0.5;AN=2;DP=162;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,51:91:99:1337,0,1050:21,19,28,23
chr1	40435514	.	CT	C	4380.08	PASS	AC=2;AF=0.955;AN=2;DP=5373;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3595,361,0:0,0,69,51
chr1	40524866	.	T	C	1503.52	PASS	AC=2;AF=0.825;AN=2;DP=3308;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1878,179,0:0,0,35,25
chr1	40525993	.	G	C	309.1	PASS	AC=1;AF=0.5;AN=2;DP=316;MQ=60;set=variant2-variant6-variant9-variant10-variant11-variant18-variant20-variant22-variant30-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:366,0,383:5,10,2,10
chr1	40526003	.	T	C	329.95	PASS	AC=2;AF=0.857;AN=2;DP=875;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:78:988,78,0:0,0,5,20
chr1	40527120	.	C	T	49.73	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant9-variant10-variant11-variant18-variant20-variant30-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:157,0,404:10,1,5,0
chr1	40532028	.	C	T	1257.85	PASS	AC=1;AF=0.5;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,57:108:99:1286,0,1209:23,28,29,28
chr1	40533259	.	C	T	701.85	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=1.064;FractionInformativeReads=1;MQ=60;MQRankSum=0.029;QD=14.04;ReadPosRankSum=-0.417;SOR=0.54;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,26:50:99:730,0,664:14,10,14,12
chr1	40533266	.	T	G	786.22	PASS	AC=2;AF=1;AN=2;DP=2070;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2213,153,0:0,0,28,23
chr1	40533287	.	T	G	761.49	PASS	AC=2;AF=1;AN=2;DP=2037;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2346,165,0:0,0,27,27
chr1	40533315	.	T	G	816.01	PASS	AC=2;AF=1;AN=2;DP=1968;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1833,126,0:0,0,15,27
chr1	40533320	.	T	G	861.01	PASS	AC=2;AF=1;AN=2;DP=1996;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1966,132,0:0,0,14,28
chr1	40533326	.	T	G	1041.01	PASS	AC=2;AF=1;AN=2;DP=2034;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:2104,141,0:0,0,15,30
chr1	40533347	.	T	G	1134.85	PASS	AC=2;AF=1;AN=2;DP=2310;FS=0;MQRankSum=1.155;ReadPosRankSum=0.982;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2326,162,0:0,0,20,34
chr1	40535645	.	G	A	164.63	PASS	AC=1;AF=0.5;AN=2;DP=102;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant11-variant20-variant22-variant30-variant31-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:209,0,108:0,3,1,6
chr1	40536074	.	C	CT	7949.73	PASS	AC=2;AF=1;AN=2;DP=6552;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:6009,448,0:0,0,76,73
chr1	40538458	.	C	T	3493.68	PASS	AC=1;AF=0.5;AN=2;DP=532;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:119,138:257:99:3522,0,2868:54,65,63,75
chr1	40538790	.	C	A	338.64	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=1.833;FractionInformativeReads=1;MQ=60;MQRankSum=1.306;QD=16.13;ReadPosRankSum=0.112;SOR=0.346;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:367,0,173:2,5,6,8
chr1	40539076	.	C	T	45.01	PASS	AC=2;AF=0.825;AN=2;DP=1376;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1339,129,0:0,0,23,20
chr1	40539203	.	A	ATGAT	184.52	PASS	AC=1;AF=0.8;AN=2;DP=1119;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:414,0,630:9,7,5,6
chr1	40539228	.	G	C	147.06	PASS	AC=2;AF=0.825;AN=2;DP=1314;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1187,93,0:0,0,16,15
chr1	40539448	.	A	C	2128.31	PASS	AC=2;AF=0.825;AN=2;DP=5611;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4746,437,0:0,0,95,51
chr1	40539572	.	A	G	2569.77	PASS	AC=1;AF=0.5;AN=2;DP=3844;MQ=60;set=variant2-variant6-variant9-variant10-variant11-variant18-variant20-variant22-variant30-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:130,122:252:99:3132,0,3561:55,75,53,69
chr1	40539883	.	A	T	578.37	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.795;QD=9.97;ReadPosRankSum=-0.525;SOR=0.606;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,23:58:99:607,0,847:13,22,9,14
chr1	40544492	.	CT	C,CTT	625.26	PASS	AC=0,1;AF=0.25,0.5;AN=2;DP=61;FS=0;MQ=60;MQRankSum=0.342;ReadPosRankSum=0.439;set=variant10-variant41	GT:DP:GQ:SB	0/2:17:99:1,6,2,8
chr1	40545964	.	T	G	1052.58	PASS	AC=1;AF=0.846;AN=2;DP=3708;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,50:93:99:1250,0,1081:28,15,29,21
chr1	40547770	.	G	A	78.2	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:231,0,99:3,1,6,4
chr1	40548044	.	A	G	170.1	PASS	AC=1;AF=0.75;AN=2;DP=50;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:176,0,192:1,4,2,4
chr1	40554958	.	C	CAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAA,CAAAAAAAAAAAAA	74.2	PASS	AC=0,0,0,2,0,0;AF=0.328,0.224,0.017,0.224,0.017,0.069;AN=2;DP=217;set=variant-variant3-variant4-variant6-variant8-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	4/4:4:23:0,0,4,0
chr1	40555042	.	C	T	784.68	PASS	AC=1;AF=0.5;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,47:76:99:1098,0,718:18,11,29,18
chr1	40556922	.	T	C	3702.75	PASS	AC=2;AF=1;AN=2;DP=4384;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3006,280,0:0,0,58,36
chr1	40557656	.	G	A	641.43	PASS	AC=1;AF=0.803;AN=2;DP=1239;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:396,0,553:15,4,10,4
chr1	40558256	.	C	G	1211.59	PASS	AC=2;AF=1;AN=2;DP=1106;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.657;ReadPosRankSum=0.896;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:872,75,0:0,0,6,19
chr1	40559686	.	G	A	369.26	PASS	AC=1;AF=0.5;AN=2;DP=365;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant9-variant10-variant11-variant22-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:328,0,373:9,8,8,7
chr1	40562993	.	T	C	351.79	PASS	AC=2;AF=0.86;AN=2;DP=2432;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1932,159,0:0,0,24,29
chr1	40563019	.	G	T	713.13	PASS	AC=1;AF=0.5;AN=2;DP=486;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant9-variant10-variant11-variant22-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,33:51:99:967,0,457:10,8,19,14
chr1	40627389	.	G	T	510.2	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:662,0,566:7,14,8,17
chr1	40661480	.	C	A	275.77	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:247,0,429:5,10,3,7
chr1	40668059	.	CTG	C	382.51	PASS	AC=1;AF=0.5;AN=2;DP=43;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:306,0,414:8,2,7,1
chr1	40688132	.	C	T	284.13	PASS	AC=1;AF=0.7;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:94:309,0,94:4,0,8,1
chr1	40688179	.	C	A	84.98	PASS	AC=1;AF=0.5;AN=2;DP=57;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:434,0,641:16,3,12,5
chr1	40688661	.	TGTTA	T	131.62	PASS	AC=1;AF=0.5;AN=2;DP=29;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:105,0,406:2,5,1,2
chr1	40702570	.	C	T	1715.96	PASS	AC=1;AF=0.5;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,44:79:99:1196,0,994:21,14,19,25
chr1	40704793	.	T	C	2042.22	PASS	AC=1;AF=0.5;AN=2;DP=274;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,57:126:99:1393,0,1732:32,37,26,31
chr1	40705238	.	C	T	1137.18	PASS	AC=1;AF=0.5;AN=2;DP=146;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,22:58:99:693,0,1049:17,19,14,8
chr1	40705399	.	T	C	1235.86	PASS	AC=1;AF=0.5;AN=2;DP=127;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:929,0,588:11,15,15,17
chr1	40717362	.	G	T	1039.31	PASS	AC=1;AF=0.5;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,52:89:99:1284,0,1119:10,27,19,33
chr1	40717433	.	T	C	465.66	PASS	AC=1;AF=0.5;AN=2;DP=72;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:814,0,893:4,14,3,18
chr1	40717452	.	C	A	473.73	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:687,0,804:3,11,3,15
chr1	40737516	.	T	G	1086.67	PASS	AC=2;AF=1;AN=2;DP=1325;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1109,102,0:0,0,23,11
chr1	40766311	.	C	T	1046.25	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=0.861;FractionInformativeReads=1;MQ=60;MQRankSum=0.606;QD=13.08;ReadPosRankSum=0.375;SOR=0.576;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,41:80:99:1074,0,978:25,14,25,16
chr1	40766334	.	TG	T	1578.91	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=0.733;FractionInformativeReads=0.982;MQ=60;MQRankSum=1.14;QD=14.49;ReadPosRankSum=-0.459;SOR=0.605;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,57:107:99:1616,0,1355:31,19,34,23
chr1	40766542	.	A	T	775.87	PASS	AC=1;AF=0.5;AN=2;DP=204;FractionInformativeReads=1;MQ=60;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,70:126:99:1834,0,1339:26,30,36,34
chr1	40766618	.	C	T	1828.52	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=3.177;FractionInformativeReads=1;MQ=60;MQRankSum=1.583;QD=13.75;ReadPosRankSum=-1.012;SOR=0.54;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,78:133:99:1857,0,1388:24,31,40,38
chr1	40766732	.	A	G	1220.23	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=4.511;FractionInformativeReads=1;MQ=60;MQRankSum=0.534;QD=15.45;ReadPosRankSum=-1.743;SOR=0.322;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,47:79:99:1248,0,792:11,21,22,25
chr1	40767392	.	G	A	325.96	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.702;QD=8.58;ReadPosRankSum=0.09;SOR=0.724;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:354,0,697:15,8,10,5
chr1	40767426	.	A	G	518.75	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=1.141;FractionInformativeReads=1;MQ=60;MQRankSum=-2.057;QD=10.81;ReadPosRankSum=-1.309;SOR=0.513;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:547,0,689:18,9,13,8
chr1	40767578	.	A	G	712.29	PASS	AC=1;AF=0.5;AN=2;DP=161;FS=0;FractionInformativeReads=1;MQ=60;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,33:71:99:807,0,981:16,22,13,20
chr1	40768344	.	C	T	460.47	PASS	AC=1;AF=0.5;AN=2;DP=115;FractionInformativeReads=1;MQ=60;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:541,0,826:18,13,15,7
chr1	40768483	.	TGGAGGGAG	TGGAGGGAGGGAG,T	409.93	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=151;MQ=60;set=variant33-variant41	GT:DP:GQ:SB	0/2:79:99:18,14,25,22
chr1	40768625	.	C	T	651.8	PASS	AC=1;AF=0.5;AN=2;DP=142;FractionInformativeReads=1;MQ=60;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,66:82:99:1723,0,375:5,11,29,37
chr1	40769174	.	G	T	920.55	PASS	AC=1;AF=0.5;AN=2;DP=284;FractionInformativeReads=1;MQ=60;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:99,66:165:99:1476,0,2365:50,49,35,31
chr1	40769381	.	G	A	556.38	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=1.236;FractionInformativeReads=1;MQ=60;MQRankSum=1.11;QD=14.27;ReadPosRankSum=-0.66;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:585,0,636:9,10,11,9
chr1	40769409	.	G	T	493.58	PASS	AC=1;AF=0.5;AN=2;DP=84;MQ=60;set=variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:324,0,520:12,7,8,6
chr1	40769434	.	T	TGGGGCCGGGAGAAGGGAGG	800.31	PASS	AC=1;AF=0.5;AN=2;DP=100;MQ=60;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:841,0,804:14,7,10,6
chr1	40769584	.	T	C	1042.54	PASS	AC=1;AF=0.5;AN=2;DP=176;MQ=60;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,40:73:99:1006,0,791:18,15,25,15
chr1	40769783	.	G	A	825.16	PASS	AC=1;AF=0.5;AN=2;DP=404;FractionInformativeReads=1;MQ=60;set=variant13-variant19-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,37:105:99:957,0,1732:29,39,16,21
chr1	40770425	.	G	A	158.45	PASS	AC=2;AF=0.6;AN=2;DP=117;FractionInformativeReads=1;MQ=60;set=variant13-variant19-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:878,81,0:0,0,18,9
chr1	40770721	.	ATTTC	A	104.41	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=0.565;MQ=60;MQRankSum=1.2;QD=4.54;ReadPosRankSum=1.656;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:95:142,0,95:1,5,2,5
chr1	40770730	.	TTTC	T	161.08	PASS	AC=1;AF=0.5;AN=2;DP=76;set=variant13-variant19-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:95:95,0,142:2,5,1,5
chr1	40770748	.	T	C	181.99	PASS	AC=2;AF=0.6;AN=2;DP=60;FractionInformativeReads=1;set=variant13-variant19-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:42:587,42,0:0,0,3,10
chr1	40770780	.	C	T	49.73	PASS	AC=2;AF=0.75;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0;ReadPosRankSum=-1.026;set=variant27-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:191,18,0:0,0,1,5
chr1	40771994	.	G	C	387.66	PASS	AC=2;AF=0.6;AN=2;DP=217;FractionInformativeReads=1;MQ=60;set=variant13-variant19-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1566,135,0:0,0,13,32
chr1	40773149	.	T	C	1493.13	PASS	AC=2;AF=0.6;AN=2;DP=891;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant11-variant13-variant19-variant27-variant28-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2820,272,0:0,0,56,35
chr1	40773289	.	C	T	1862.02	PASS	AC=1;AF=0.5;AN=2;DP=656;MQ=60;set=variant13-variant19-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:87,97:184:99:2332,0,2063:46,41,51,46
chr1	40776513	.	C	T	2725.78	PASS	AC=2;AF=0.75;AN=2;DP=474;FractionInformativeReads=1;MQ=60;set=variant13-variant19-variant27-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3285,328,0:0,0,53,57
chr1	40777266	.	G	A	527.83	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=0.984;FractionInformativeReads=1;MQ=60;MQRankSum=-0.121;QD=8.51;ReadPosRankSum=-0.021;SOR=0.761;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:556,0,835:17,19,14,12
chr1	40777800	.	T	G	930.92	PASS	AC=2;AF=0.591;AN=2;DP=791;MQ=60;set=variant3-variant5-variant11-variant13-variant19-variant27-variant28-variant30-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2710,183,0:0,0,30,31
chr1	40777804	.	T	C	3654.66	PASS	AC=2;AF=0.75;AN=2;DP=295;FractionInformativeReads=1;MQ=60;set=variant13-variant19-variant27-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2737,184,0:0,0,31,30
chr1	40777842	.	A	G	1007.89	PASS	AC=2;AF=0.583;AN=2;DP=753;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant10-variant11-variant13-variant19-variant27-variant28-variant30-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1843,189,0:0,0,28,35
chr1	40777884	.	CTT	CT,CTTT,C	61.8	PASS	AC=0,1,0;AF=0.222,0.259,0.019;AN=2;DP=1398;MQ=60;set=filterInvariant-filterInvariant5-variant6-variant8-filterInvariant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-filterInvariant16-variant19-filterInvariant23-filterInvariant25-variant26-variant27-variant29-variant30-filterInvariant31-filterInvariant32-variant33-variant35-variant38-filterInvariant39-variant41-variant42	GT:DP:GQ:SB	0/2:39:5:2,3,16,18
chr1	40778377	.	C	T	2910.73	PASS	AC=2;AF=0.6;AN=2;DP=1054;set=variant3-variant5-variant11-variant13-variant19-variant27-variant30-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3547,341,0:0,0,51,63
chr1	40778567	.	C	T	915.76	PASS	AC=2;AF=0.667;AN=2;DP=224;MQ=60;set=variant13-variant19-variant27-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,37:38:99:1163,104,0:1,0,16,21
chr1	40779841	.	G	T	844.06	PASS	AC=2;AF=0.667;AN=2;DP=161;FractionInformativeReads=1;MQ=60;set=variant13-variant19-variant27-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:65:749,65,0:0,0,17,5
chr1	40781175	.	CG	C	2442.22	PASS	AC=2;AF=0.591;AN=2;DP=954;MQ=60;set=variant3-variant5-variant10-variant11-variant13-variant19-variant27-variant30-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:3177,217,0:0,0,39,33
chr1	40781177	.	A	C	2451.27	PASS	AC=2;AF=0.591;AN=2;DP=948;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant10-variant11-variant13-variant19-variant27-variant30-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:3177,217,0:0,0,39,33
chr1	40781185	.	A	C	669.7	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2316;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:45,25:70:99:413,0,1865:9,36,25,0
chr1	40781191	.	A	C	250.02	PASS	AC=1;AF=0.5;AN=2;DP=1545;MQ=60;set=filterInvariant2-filterInvariant5-filterInvariant8-filterInvariant14-filterInvariant16-filterInvariant17-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant28-filterInvariant32-variant34-filterInvariant35-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:49,25:74:99:398,0,2081:11,38,25,0
chr1	40781194	.	A	C	241.02	PASS	AC=1;AF=0.5;AN=2;DP=627;MQ=60;set=variant2-filterInvariant5-filterInvariant8-filterInvariant17-filterInvariant28-variant34-filterInvariant38-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:47,26:73:99:608,0,973:8,39,26,0
chr1	40781196	.	A	C	306.09	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=42.456;FractionInformativeReads=0.983;MQ=60;MQRankSum=0.343;QD=5.1;ReadPosRankSum=-3.509;SOR=4.396;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,8:59:99:334,0,2035:12,39,8,0
chr1	40840270	.	T	TGC	233.71	PASS	AC=2;AF=0.564;AN=2;DP=1686;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-filterInvariant12-variant13-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,19:21:16:496,16,0:2,0,11,8
chr1	40840294	.	T	A	107.43	PASS	AC=1;AF=0.5;AN=2;DP=537;set=variant11-variant12-variant13-variant15-variant27-variant29-variant30-filterInvariant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:192,0,749:12,8,7,3
chr1	40840296	.	T	A,TGA,TGTGA	973.38	PASS	AC=1,0,1;AF=0.317,0.329,0.061;AN=2;DP=2299;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant2-variant44	GT:DP:GQ:SB	1/3:31:99:1,1,18,11
chr1	40840353	.	A	G	1989.28	PASS	AC=1;AF=0.682;AN=2;DP=3193;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,39:73:99:1075,0,881:16,18,23,16
chr1	40859213	.	CTTT	CT,CTT,CTTTT,C	217.64	PASS	AC=0,0,0,1;AF=0.203,0.297,0.016,0.078;AN=2;DP=1158;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant13-filterInvariant15-filterInvariant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:16:99:5,6,1,4
chr1	40859235	.	T	C	499.23	PASS	AC=1;AF=0.5;AN=2;DP=92;MQ=60;set=variant11-variant12-variant13-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:113,0,285:2,5,1,4
chr1	40872623	.	C	T	1229.89	PASS	AC=1;AF=0.571;AN=2;DP=745;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant19-variant24-variant26-variant31-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:614,0,748:8,19,7,17
chr1	40879636	.	T	C	460.98	PASS	AC=2;AF=0.93;AN=2;DP=555;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:720,60,0:0,0,16,4
chr1	40879808	.	G	T,C	2011.23	PASS	AC=1,1;AF=0.898,0.068;AN=2;DP=3576;MQ=60;set=Intersection	GT:DP:GQ:SB	2/1:58:99:0,0,31,27
chr1	40879952	.	T	G	1746.26	PASS	AC=1;AF=0.571;AN=2;DP=1294;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant19-variant24-variant26-variant31-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,43:68:99:1022,0,558:12,13,18,25
chr1	40881041	.	C	G	4550.02	PASS	AC=2;AF=0.92;AN=2;DP=6688;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4307,417,0:0,0,60,79
chr1	40882900	.	CTT	CT,C,CTTT	594	PASS	AC=0,1,0;AF=0.41,0.077,0.026;AN=2;DP=4135;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-filterInvariant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43	GT:DP:GQ:SB	0/2:50:99:14,16,6,14
chr1	40916628	.	GC	G	297.42	PASS	AC=1;AF=0.5;AN=2;DP=67;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,13:37:99:374,0,786:15,9,12,1
chr1	40923019	.	G	A	1452.74	PASS	AC=1;AF=0.587;AN=2;DP=3132;MQ=60;set=variant4-variant5-variant6-variant9-variant15-variant17-variant18-variant19-variant20-variant24-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,64:119:99:1631,0,1355:28,27,35,29
chr1	40927863	.	A	G	679.88	PASS	AC=1;AF=0.563;AN=2;DP=298;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant10-variant24-variant30-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:834,0,478:14,3,20,8
chr1	40942849	.	G	A	292.77	PASS	AC=1;AF=0.5;AN=2;DP=234;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant16-variant19-variant24-variant26-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:525,0,1031:11,10,8,6
chr1	40942853	.	G	A	292.77	PASS	AC=1;AF=0.5;AN=2;DP=239;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant16-variant19-variant24-variant26-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:525,0,1031:11,10,8,6
chr1	40943156	.	A	G	2501.16	PASS	AC=2;AF=1;AN=2;DP=2781;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2115,204,0:0,0,35,33
chr1	40944704	.	G	C	288.64	PASS	AC=1;AF=0.5;AN=2;DP=211;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant16-variant19-variant24-variant26-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:99:155,0,443:11,5,4,2
chr1	40945022	.	A	G	1016.87	PASS	AC=1;AF=0.5;AN=2;DP=559;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant16-variant19-variant24-variant26-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,34:60:99:805,0,634:14,12,19,15
chr1	40945263	.	C	T	688.08	PASS	AC=1;AF=0.5;AN=2;DP=257;MQ=60;set=variant11-variant13-variant16-variant19-variant24-variant26-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:99:282,0,112:1,3,6,5
chr1	40945326	.	G	C	182.41	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=0;FractionInformativeReads=1;MQ=60;set=variant11-variant19-variant24-variant26-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:64:256,0,64:0,2,1,6
chr1	40954877	.	G	C	1761.07	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.602;QD=13.24;ReadPosRankSum=-0.976;SOR=0.712;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:63,70:133:99:1789,0,1480:33,30,37,33
chr1	40955156	.	A	T	345.04	PASS	AC=1;AF=0.62;AN=2;DP=1249;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant33-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,39:56:99:1043,0,424:7,10,24,15
chr1	40960619	.	G	A	575.89	PASS	AC=1;AF=0.5;AN=2;DP=662;MQ=60;set=variant11-variant13-variant16-variant19-variant24-variant26-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:876,0,554:13,11,22,11
chr1	40974428	.	G	C	286.14	PASS	AC=1;AF=0.5;AN=2;DP=384;MQ=60;set=variant11-variant13-variant16-variant19-variant24-variant26-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,16:44:99:423,0,738:17,11,12,4
chr1	40974799	.	T	C	555.96	PASS	AC=1;AF=0.694;AN=2;DP=2822;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,41:83:99:995,0,1082:18,24,17,24
chr1	40975104	.	C	T	729.86	PASS	AC=2;AF=1;AN=2;DP=2078;FS=0;MQ=60;MQRankSum=1.347;ReadPosRankSum=1.027;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1305,123,0:0,0,25,16
chr1	40975260	.	G	C	90.71	PASS	AC=1;AF=0.694;AN=2;DP=1498;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:625,0,638:10,14,12,11
chr1	40980731	.	G	T	1297.01	PASS	AC=1;AF=0.694;AN=2;DP=3085;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,50:95:99:1359,0,1221:24,21,26,24
chr1	40997453	.	G	T	284.26	PASS	AC=1;AF=0.5;AN=2;DP=183;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant16-variant19-variant24-variant26-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:198,0,145:2,3,4,5
chr1	41006154	.	A	G	545.53	PASS	AC=1;AF=0.5;AN=2;DP=577;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant16-variant19-variant24-variant26-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,32:55:99:1043,0,564:18,5,27,5
chr1	41010230	.	G	C	367.83	PASS	AC=1;AF=0.5;AN=2;DP=227;FractionInformativeReads=1;set=variant11-variant13-variant16-variant19-variant24-variant26-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:186,0,271:7,1,5,0
chr1	41010592	.	G	A	3427.44	PASS	AC=1;AF=0.5;AN=2;DP=3442;MQ=60;set=variant11-variant13-variant16-variant19-variant24-variant26-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:167,184:351:99:4870,0,4338:102,65,115,69
chr1	41012847	.	A	G	1262.71	PASS	AC=1;AF=0.5;AN=2;DP=1095;MQ=60;set=variant11-variant13-variant16-variant19-variant24-variant26-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,55:126:99:1517,0,1781:35,36,27,28
chr1	41013260	.	C	T	369.68	PASS	AC=1;AF=0.694;AN=2;DP=1344;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,29:51:99:743,0,477:12,10,16,13
chr1	41088427	.	T	C	641.87	PASS	AC=1;AF=0.5;AN=2;DP=180;MQ=60;set=variant7-variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:507,0,587:9,14,11,12
chr1	41091127	.	T	C	328.38	PASS	AC=1;AF=0.833;AN=2;DP=2308;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:641,0,751:15,14,11,14
chr1	41101572	.	A	G	523.55	PASS	AC=1;AF=0.833;AN=2;DP=2281;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,28:46:99:674,0,433:13,5,18,10
chr1	41107239	.	G	A	712.27	PASS	AC=1;AF=0.6;AN=2;DP=1117;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant13-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:883,0,928:24,5,23,6
chr1	41107360	.	T	C	2240.71	PASS	AC=1;AF=0.821;AN=2;DP=10531;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,134:248:99:3168,0,2543:56,58,68,66
chr1	41107706	.	C	T	495.41	PASS	AC=1;AF=0.6;AN=2;DP=935;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant13-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:596,0,731:9,18,9,13
chr1	41107769	.	CA	C	209.24	PASS	AC=1;AF=0.6;AN=2;DP=407;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant13-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:264,0,481:4,11,2,7
chr1	41131398	.	C	A	52.74	PASS	AC=1;AF=0.6;AN=2;DP=363;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant34-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:140,0,252:6,5,3,2
chr1	41177943	.	T	C	1025.65	PASS	AC=1;AF=0.814;AN=2;DP=2241;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,28:49:99:858,0,670:17,4,22,6
chr1	41178228	.	AT	A	540.14	PASS	AC=1;AF=0.814;AN=2;DP=2709;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,29:48:99:631,0,389:4,15,4,25
chr1	41188915	.	A	G	124.38	PASS	AC=1;AF=0.529;AN=2;DP=531;MQ=60;set=variant-variant2-variant7-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant31-variant32-variant33-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:301,0,507:9,9,6,7
chr1	41201257	.	C	G	435.11	PASS	AC=1;AF=0.529;AN=2;DP=920;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant31-variant32-variant33-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:512,0,697:13,12,10,13
chr1	41204569	.	C	T	1167.78	PASS	AC=1;AF=0.657;AN=2;DP=3153;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:813,0,1008:16,23,19,21
chr1	41215075	.	T	A	708.83	PASS	AC=1;AF=0.595;AN=2;DP=1417;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant13-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant32-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:713,0,731:18,9,19,8
chr1	41224008	.	C	T	103.93	PASS	AC=1;AF=0.529;AN=2;DP=703;MQ=60;set=variant-variant2-variant7-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant31-variant32-variant33-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,29:60:99:599,0,652:15,16,14,15
chr1	41229122	.	G	T	135.15	PASS	AC=1;AF=0.5;AN=2;DP=136;FractionInformativeReads=1;set=variant-variant2-variant14-variant15-variant18-variant19-variant24-variant31-variant32-variant33-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:162,0,101:1,3,4,4
chr1	41232194	.	T	C	135.18	PASS	AC=1;AF=0.531;AN=2;DP=259;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant31-variant32-variant33-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:415,0,298:7,2,11,0
chr1	41235177	.	G	C	629.75	PASS	AC=1;AF=0.617;AN=2;DP=1218;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,29:47:99:729,0,510:5,13,11,18
chr1	41235946	.	G	A	312.97	PASS	AC=1;AF=0.609;AN=2;DP=1312;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant13-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant32-variant36-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,20:56:99:475,0,1023:26,10,12,8
chr1	41236837	.	CT	C,CTT	1653.95	PASS	AC=1,0;AF=0.5,0.026;AN=2;DP=3299;MQ=60;set=variant-variant2-variant7-variant9-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant31-variant32-variant33-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:141:99:38,38,34,31
chr1	41237388	.	A	G	722.83	PASS	AC=1;AF=0.556;AN=2;DP=964;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant11-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:732,0,606:4,17,7,19
chr1	41284085	.	C	T	552.43	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=17.794;FractionInformativeReads=1;MQ=60;MQRankSum=0.481;QD=15.35;ReadPosRankSum=-0.16;SOR=1.686;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:581,0,389:4,11,15,6
chr1	41284366	.	G	C	980.79	PASS	AC=1;AF=0.738;AN=2;DP=3931;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,55:112:99:1398,0,1455:25,32,25,30
chr1	41284406	.	A	G	491.66	PASS	AC=1;AF=0.738;AN=2;DP=2540;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:1079,0,1061:18,24,16,24
chr1	41284509	.	C	G	175.7	PASS	AC=1;AF=0.75;AN=2;DP=513;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:367,0,964:4,6,3,7
chr1	41284520	.	A	G	220.7	PASS	AC=1;AF=0.75;AN=2;DP=463;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:408,0,918:4,5,3,6
chr1	41284527	.	T	G	136.72	PASS	AC=1;AF=0.756;AN=2;DP=424;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:264,0,887:4,5,2,5
chr1	41285087	.	T	C	2431.51	PASS	AC=1;AF=0.738;AN=2;DP=14026;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,182:340:99:4388,0,3701:84,74,88,94
chr1	41288105	.	G	C	265.73	PASS	AC=1;AF=0.5;AN=2;DP=170;MQ=60;set=variant5-variant6-variant21-variant22-variant32-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:196,0,130:3,2,7,2
chr1	41289579	.	C	T	75.41	PASS	AC=1;AF=0.577;AN=2;DP=418;MQ=60;set=variant2-variant3-variant4-variant6-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:88:88,0,242:6,3,3,0
chr1	41298652	.	T	C	540.87	PASS	AC=2;AF=0.75;AN=2;DP=5367;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3433,332,0:0,0,68,43
chr1	41298858	.	A	G	567.34	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.122;QD=14.18;ReadPosRankSum=1.961;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:596,0,598:4,16,4,16
chr1	41300952	.	C	A	359.92	PASS	AC=1;AF=0.531;AN=2;DP=398;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant10-variant12-variant13-variant14-variant25-variant26-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:99:378,0,133:1,4,2,11
chr1	41305217	.	A	T	1659.74	PASS	AC=2;AF=0.93;AN=2;DP=2866;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1708,169,0:0,0,25,32
chr1	41327873	.	G	C	3065.14	PASS	AC=1;AF=0.658;AN=2;DP=3416;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,41:91:99:917,0,1349:22,28,20,21
chr1	41453286	.	GT	G	1902.43	PASS	AC=2;AF=0.92;AN=2;DP=1757;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1873,150,0:0,0,10,40
chr1	41487404	.	G	T	621.88	PASS	AC=1;AF=0.688;AN=2;DP=481;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant11-variant14-variant23-variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,32:56:99:1097,0,720:9,15,14,18
chr1	41492932	.	G	A	687.82	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.546;QD=17.64;ReadPosRankSum=0.234;SOR=0.773;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,28:39:99:716,0,251:7,4,18,10
chr1	41493807	.	A	G	1394.33	PASS	AC=1;AF=0.5;AN=2;DP=100;FS=2.634;FractionInformativeReads=1;MQ=60;MQRankSum=0.128;QD=13.94;ReadPosRankSum=-1.705;SOR=0.45;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,56:100:99:1423,0,1050:26,18,29,27
chr1	41540853	.	A	T	4040.78	PASS	AC=2;AF=0.826;AN=2;DP=5169;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:5383,367,0:0,0,71,48
chr1	41540861	.	T	C	4235.78	PASS	AC=2;AF=0.826;AN=2;DP=5668;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:5510,382,0:0,0,76,51
chr1	41618442	.	A	T	1140.11	PASS	AC=2;AF=0.826;AN=2;DP=2184;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1338,117,0:0,0,15,24
chr1	41707766	.	T	C	376.08	PASS	AC=2;AF=1;AN=2;DP=633;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:360,30,0:0,0,2,8
chr1	41847872	.	G	GGCCCGCGCCGGGACGCCCGCCTACTTCGGCGGCTGCAAGGGCGGCGCCTACGGCGGGGGCGGGGGCTTCGGGCCGCCGGCGATGGGCGCTCTGCGCCGTCTGCCCATGCAGACCATCCAGGAGAACAAGCAGGCCAGCTTCGTGCCGGCCGCGGCGCCCTTCCGCCCTGGGGCGCTGCCCGCGCTGCTGCCGCCGCCGCC	1246.32	PASS	AC=2;AF=1;AN=2;DP=85;FractionInformativeReads=1;set=variant11-variant16-variant32-variant41	GT:AD:DP:GQ:PL:SB	1/1:4,17:21:63:1208,63,0:1,3,4,13
chr1	41848060	.	C	T	769.14	PASS	AC=1;AF=0.643;AN=2;DP=2183;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,42:70:99:984,0,647:16,12,24,18
chr1	41848296	.	G	A	1822.14	PASS	AC=1;AF=0.643;AN=2;DP=8765;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:143,102:245:99:2063,0,3337:69,74,48,54
chr1	41849018	.	G	C	1445.92	PASS	AC=2;AF=1;AN=2;DP=1277;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.116;ReadPosRankSum=1.502;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:628,51,0:0,0,5,12
chr1	41849340	.	A	C	34.68	PASS	AC=1;AF=0.676;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:98:244,0,98:0,3,1,6
chr1	41949595	.	G	A	1305.46	PASS	AC=2;AF=1;AN=2;DP=2782;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,79:80:99:2550,229,0:0,1,50,29
chr1	41949628	.	A	C	1569.72	PASS	AC=2;AF=0.86;AN=2;DP=3526;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2844,270,0:0,0,52,38
chr1	41950312	.	T	C	4189.37	PASS	AC=2;AF=0.943;AN=2;DP=5966;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4559,453,0:0,0,65,86
chr1	41950473	.	G	A	57.81	PASS	AC=1;AF=0.593;AN=2;DP=356;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:184,0,359:1,8,1,5
chr1	41973510	.	C	T	659.95	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=2.54;FractionInformativeReads=0.978;MQ=60;MQRankSum=-0.811;QD=14.35;ReadPosRankSum=-1.679;SOR=1.136;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:688,0,482:10,10,10,15
chr1	41975149	.	G	C	4372.78	PASS	AC=2;AF=1;AN=2;DP=6340;FS=0;MQ=60;MQRankSum=1.6;ReadPosRankSum=1.07;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:4783,500,0:0,0,88,79
chr1	41975176	.	C	T	1428.13	PASS	AC=1;AF=0.5;AN=2;DP=1238;MQ=60;set=variant2-variant12-variant14-variant17-variant29-variant32-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,97:169:99:2181,0,1532:37,35,48,49
chr1	41975890	.	G	GT	696.46	PASS	AC=2;AF=0.75;AN=2;DP=221;FS=0;MQ=60;MQRankSum=-0.909;ReadPosRankSum=-0.784;set=variant28-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3269,348,0:0,0,70,45
chr1	41976217	.	G	A	680.84	PASS	AC=1;AF=0.5;AN=2;DP=701;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant12-variant14-variant21-variant23-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,34:78:99:924,0,1256:20,24,11,23
chr1	41976328	.	T	C	2949.85	PASS	AC=1;AF=0.977;AN=2;DP=3125;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,23:66:99:510,0,1581:23,20,11,12
chr1	41976351	.	C	T	364.93	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=0;FractionInformativeReads=1;MQ=60;set=variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,40:66:99:1049,0,881:13,13,21,19
chr1	41978359	.	G	T	651.9	PASS	AC=1;AF=0.977;AN=2;DP=580;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:290,0,373:9,3,8,2
chr1	41978566	.	T	G	3282.22	PASS	AC=2;AF=1;AN=2;DP=4240;FS=0;MQRankSum=1.155;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2686,246,0:0,0,48,34
chr1	41978825	.	C	G	8438.49	PASS	AC=2;AF=1;AN=2;DP=12233;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,250:250:99:8086,749,0:0,0,150,100
chr1	41979156	.	A	G	3354.13	PASS	AC=1;AF=0.613;AN=2;DP=4047;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,59:107:99:1672,0,1370:18,30,24,35
chr1	41983912	.	C	A	2939.6	PASS	AC=1;AF=0.977;AN=2;DP=3551;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,48:95:99:1401,0,1255:26,21,35,13
chr1	42045302	.	G	A	1465.02	PASS	AC=1;AF=0.989;AN=2;DP=1363;FS=0;MQ=60;MQRankSum=-0.758;ReadPosRankSum=0.993;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:328,0,542:14,7,10,4
chr1	42046812	.	C	T	800.8	PASS	AC=1;AF=0.989;AN=2;DP=2337;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:570,0,586:12,10,11,11
chr1	42048745	.	T	C	3274.7	PASS	AC=1;AF=0.989;AN=2;DP=5723;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:72,66:138:99:1858,0,2181:35,37,27,39
chr1	42049032	.	G	A	2898.43	PASS	AC=1;AF=0.977;AN=2;DP=4313;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:68,65:133:99:1715,0,1964:40,28,36,29
chr1	42049140	.	C	G	6720.74	PASS	AC=1;AF=0.977;AN=2;DP=10044;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:122,115:237:99:2985,0,3080:69,53,73,42
chr1	42094498	.	A	G	457.09	PASS	AC=1;AF=0.611;AN=2;DP=2723;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,41:77:99:1045,0,822:16,20,21,20
chr1	42094659	.	T	C	37.65	PASS	AC=1;AF=0.614;AN=2;DP=762;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:221,0,401:5,9,4,6
chr1	42618874	.	G	A	111.22	PASS	AC=1;AF=0.625;AN=2;DP=115;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant9-variant13-variant15-variant18-variant19-variant22-variant26-variant27-variant28-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:141,0,160:4,1,4,0
chr1	42619152	.	C	A	5561.65	PASS	AC=1;AF=0.6;AN=2;DP=3343;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant26-variant27-variant28-variant30-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,55:143:99:1302,0,2327:41,47,29,26
chr1	42619377	.	G	A	1930.94	PASS	AC=1;AF=0.6;AN=2;DP=928;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant26-variant27-variant28-variant30-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:759,0,798:9,18,8,19
chr1	42620878	.	C	T	393.83	PASS	AC=1;AF=0.5;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant3-variant25-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:240,0,427:9,7,7,4
chr1	42629040	.	A	G	3155.44	PASS	AC=2;AF=1;AN=2;DP=5914;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4552,438,0:0,0,89,58
chr1	42643168	.	T	C	3100.13	PASS	AC=1;AF=0.5;AN=2;DP=253;FS=0.975;FractionInformativeReads=1;MQ=60;MQRankSum=2.562;QD=12.25;ReadPosRankSum=0.049;SOR=0.604;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:130,123:253:99:3128,0,3447:53,77,53,70
chr1	42644069	.	A	C	1780.39	PASS	AC=1;AF=0.5;AN=2;DP=180;FS=1.175;FractionInformativeReads=1;MQ=60;MQRankSum=0.088;QD=9.89;ReadPosRankSum=1.183;SOR=0.677;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:104,76:180:99:1809,0,2405:54,50,37,39
chr1	42644770	.	C	T	8087.2	PASS	AC=2;AF=0.886;AN=2;DP=10135;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,213:213:99:6861,638,0:0,0,92,121
chr1	42647564	.	ACTCACT	A	202.69	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=1.81;FractionInformativeReads=1;MQ=60;MQRankSum=-0.272;QD=8.11;ReadPosRankSum=1.664;SOR=1.302;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:240,0,710:10,8,5,2
chr1	42654364	.	G	A	463.41	PASS	AC=1;AF=0.574;AN=2;DP=1288;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,17:46:99:477,0,871:23,6,14,3
chr1	42654929	.	G	A	3452.97	PASS	AC=1;AF=0.5;AN=2;DP=273;FS=4.059;FractionInformativeReads=1;MQ=60;MQRankSum=1.582;QD=12.65;ReadPosRankSum=-0.451;SOR=0.945;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:147,126:273:99:3481,0,4069:69,78,52,74
chr1	42655125	.	T	C	2415.89	PASS	AC=1;AF=0.5;AN=2;DP=207;FS=9.099;FractionInformativeReads=0.995;MQ=60;MQRankSum=-2.462;QD=11.67;ReadPosRankSum=2.345;SOR=0.376;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:105,101:206:99:2444,0,2581:41,64,51,50
chr1	42656868	.	C	G	493.33	PASS	AC=1;AF=0.574;AN=2;DP=692;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:529,0,422:11,3,14,2
chr1	42693597	.	A	G	4990.59	PASS	AC=1;AF=0.738;AN=2;DP=6510;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,69:143:99:1758,0,1713:35,39,28,41
chr1	42730513	.	C	T	979.21	PASS	AC=1;AF=0.5;AN=2;DP=186;FractionInformativeReads=1;MQ=60;set=variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,50:97:99:1487,0,1332:34,13,34,16
chr1	42730525	.	T	C	4312.92	PASS	AC=2;AF=1;AN=2;DP=5950;FS=0;MQ=60;MQRankSum=1.642;ReadPosRankSum=1.102;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:4391,357,0:0,0,78,40
chr1	42801012	.	G	T	92.31	PASS	AC=1;AF=0.5;AN=2;DP=65;MQ=60;set=variant3-variant18-variant25-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:61:121,0,61:0,2,1,3
chr1	42801481	.	T	A	719.09	PASS	AC=1;AF=0.5;AN=2;DP=318;MQ=60;set=variant3-variant18-variant25-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:309,0,604:10,12,7,8
chr1	42846365	.	T	C	111.22	PASS	AC=1;AF=0.714;AN=2;DP=393;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:102,0,180:4,4,2,3
chr1	42846786	.	G	C	1058.07	PASS	AC=1;AF=0.689;AN=2;DP=3700;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,42:81:99:1059,0,997:16,23,16,26
chr1	42880442	.	G	A	1424.48	PASS	AC=1;AF=0.5;AN=2;DP=530;FractionInformativeReads=1;MQ=60;set=variant28-variant32-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,64:129:99:1766,0,1888:31,34,34,30
chr1	42880866	.	G	A	10470	PASS	AC=2;AF=1;AN=2;DP=13308;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,289:289:99:9384,865,0:0,0,117,172
chr1	42898843	.	A	G	3396.56	PASS	AC=2;AF=0.805;AN=2;DP=4210;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3358,332,0:0,0,65,46
chr1	42901160	.	G	A	345.25	PASS	AC=1;AF=0.5;AN=2;DP=48;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:235,0,530:7,13,3,7
chr1	42915727	.	C	G	1531.52	PASS	AC=1;AF=0.625;AN=2;DP=3136;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant10-variant14-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant32-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,68:160:99:1506,0,2373:45,47,35,33
chr1	42915753	.	T	C	1368.73	PASS	AC=1;AF=0.629;AN=2;DP=5324;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,63:153:99:1512,0,2270:40,50,27,36
chr1	42921211	.	C	G	294.08	PASS	AC=1;AF=0.636;AN=2;DP=468;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:153,0,113:3,1,4,0
chr1	42925688	.	T	G	6263.37	PASS	AC=1;AF=0.629;AN=2;DP=17770;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:277,260:537:99:6324,0,6958:145,132,132,128
chr1	42948585	.	C	A	258.86	PASS	AC=1;AF=0.643;AN=2;DP=571;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:163,0,368:1,10,0,5
chr1	43002744	.	G	A	797.68	PASS	AC=1;AF=0.629;AN=2;DP=2379;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,51:92:99:1363,0,991:26,15,33,18
chr1	43011030	.	A	G	203.25	PASS	AC=1;AF=0.639;AN=2;DP=166;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant10-variant20-variant21-variant22-variant23-variant26-variant28-variant32-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:273,0,226:6,0,7,0
chr1	43011389	.	A	G	88.71	PASS	AC=1;AF=0.667;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,8:9:5:286,0,5:0,1,2,6
chr1	43021810	.	C	T	427.43	PASS	AC=1;AF=0.629;AN=2;DP=1443;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,11:43:99:237,0,845:19,13,8,3
chr1	43023713	.	G	GA	630.78	PASS	AC=1;AF=0.625;AN=2;DP=693;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant10-variant14-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant32-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:332,0,462:12,7,10,5
chr1	43030158	.	G	A	58.54	PASS	AC=1;AF=0.69;AN=2;DP=267;FractionInformativeReads=1;set=variant4-variant7-variant10-variant12-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant28-variant30-variant33-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,4:17:88:88,0,376:8,5,3,1
chr1	43030190	.	A	ACCTCAGGTGATCCACCCACCTCGG	211.53	PASS	AC=1;AF=0.632;AN=2;DP=764;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:355,0,1101:9,9,6,1
chr1	43042703	.	C	T	952.46	PASS	AC=1;AF=0.625;AN=2;DP=2442;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant10-variant14-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant32-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,78:158:99:1867,0,1867:44,36,48,30
chr1	43047057	.	A	G	276.7	PASS	AC=1;AF=0.625;AN=2;DP=885;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant10-variant14-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant32-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,11:34:99:292,0,676:14,9,8,3
chr1	43054909	.	T	C	91.49	PASS	AC=1;AF=0.731;AN=2;DP=82;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant22-variant23-variant24-variant26-variant28-variant32-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:108,0,298:5,0,3,0
chr1	43055243	.	C	G	186.39	PASS	AC=1;AF=0.768;AN=2;DP=777;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:424,0,394:3,10,1,11
chr1	43102844	.	T	C	231.5	PASS	AC=1;AF=0.607;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant10-variant14-variant22-variant27-variant28-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:166,0,107:3,1,5,1
chr1	43108188	.	G	A	826.06	PASS	AC=1;AF=0.583;AN=2;DP=1154;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant10-variant22-variant28-variant32-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:960,0,965:22,19,22,19
chr1	43110276	.	G	A	264.05	PASS	AC=1;AF=0.705;AN=2;DP=886;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:515,0,332:9,3,14,3
chr1	43111741	.	G	A	168.43	PASS	AC=1;AF=0.583;AN=2;DP=296;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant10-variant22-variant28-variant32-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:452,0,335:8,4,12,4
chr1	43119855	.	A	C	4483.94	PASS	AC=1;AF=0.583;AN=2;DP=3747;MQ=60;set=variant-variant6-variant7-variant10-variant22-variant28-variant32-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:141,149:290:99:3812,0,3449:71,70,80,69
chr1	43124220	.	G	A	449.83	PASS	AC=1;AF=0.583;AN=2;DP=1285;MQ=60;set=variant-variant6-variant7-variant10-variant22-variant28-variant32-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,47:98:99:1178,0,1317:20,31,17,30
chr1	43124701	.	A	G	271.42	PASS	AC=1;AF=0.711;AN=2;DP=1328;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,20:37:99:612,0,469:5,12,7,13
chr1	43124859	.	C	T	1263.74	PASS	AC=1;AF=0.711;AN=2;DP=3140;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,39:89:99:1065,0,1278:31,19,24,15
chr1	43131653	.	G	A	1555.27	PASS	AC=1;AF=0.571;AN=2;DP=1725;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant10-variant22-variant28-variant32-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,47:103:99:1149,0,1396:28,28,25,22
chr1	43162182	.	GC	GCCC,G,GCC,GCCCC	258.4	PASS	AC=1,0,0,0;AF=0.143,0.054,0.375,0.054;AN=2;DP=542;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:19:99:4,6,1,8
chr1	43166409	.	GAGA	G	1932.47	PASS	AC=1;AF=0.571;AN=2;DP=1838;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant10-variant22-variant28-variant32-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,68:130:99:2669,0,2925:34,28,40,28
chr1	43200526	.	T	C	995.33	PASS	AC=1;AF=0.731;AN=2;DP=2773;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:776,0,750:17,10,14,14
chr1	43201216	.	A	C	1324.27	PASS	AC=1;AF=0.718;AN=2;DP=3684;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,60:104:99:1599,0,1024:24,20,35,25
chr1	43212111	.	C	T	517.94	PASS	AC=1;AF=0.756;AN=2;DP=2577;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,52:83:99:1318,0,681:18,13,33,19
chr1	43212431	.	A	G	2547.93	PASS	AC=2;AF=1;AN=2;DP=5967;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4245,396,0:0,0,56,76
chr1	43213499	.	C	T	856.87	PASS	AC=1;AF=0.724;AN=2;DP=3156;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,45:92:99:1129,0,1141:18,29,16,29
chr1	43228189	.	T	A	2151.23	PASS	AC=2;AF=0.989;AN=2;DP=3235;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,83:84:99:2430,241,0:0,1,30,53
chr1	43232807	.	C	G	393.51	PASS	AC=1;AF=0.73;AN=2;DP=1870;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,26:52:99:829,0,838:10,16,14,12
chr1	43232877	.	A	T	1008.75	PASS	AC=1;AF=0.614;AN=2;DP=1801;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant20-variant21-variant23-variant24-variant26-variant28-variant32-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:1026,0,1090:22,18,22,16
chr1	43239395	.	G	A	752.35	PASS	AC=1;AF=0.744;AN=2;DP=1964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:630,0,730:3,20,7,18
chr1	43282455	.	C	T	537.67	PASS	AC=1;AF=0.607;AN=2;DP=1433;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,23:55:99:505,0,781:15,17,10,13
chr1	43296118	.	G	A	598.37	PASS	AC=1;AF=0.579;AN=2;DP=2137;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant20-variant21-variant23-variant24-variant26-variant28-variant32-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,60:126:99:1611,0,1807:36,30,33,27
chr1	43296354	.	G	T	1702.23	PASS	AC=1;AF=0.6;AN=2;DP=2899;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant22-variant24-variant27-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,49:110:99:1271,0,1430:28,33,21,28
chr1	43300865	.	G	A	1850.31	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=3.137;FractionInformativeReads=1;MQ=60;MQRankSum=-0.524;QD=13.71;ReadPosRankSum=0.687;SOR=0.997;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,74:135:99:1879,0,1430:28,33,29,45
chr1	43300921	.	C	G	639.91	PASS	AC=1;AF=0.817;AN=2;DP=2865;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,48:84:99:1353,0,883:13,23,13,35
chr1	43305753	.	G	A	1826.56	PASS	AC=1;AF=0.567;AN=2;DP=1812;MQ=60;set=variant8-variant9-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant32-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,65:141:99:1631,0,2076:44,32,35,30
chr1	43309383	.	G	GT	1235.45	PASS	AC=1;AF=0.737;AN=2;DP=3574;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,43:88:99:1133,0,1206:28,17,28,15
chr1	43309548	.	G	A	7414.55	PASS	AC=1;AF=0.989;AN=2;DP=9516;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:120,94:214:99:2270,0,2933:52,68,41,53
chr1	43309842	.	G	C	1344.08	PASS	AC=2;AF=1;AN=2;DP=1462;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:886,75,0:0,0,12,13
chr1	43312157	.	T	C	879.73	PASS	AC=2;AF=1;AN=2;DP=1397;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1277,119,0:0,0,29,11
chr1	43312493	.	C	CG	2486.36	PASS	AC=2;AF=1;AN=2;DP=4920;FS=0;MQ=60;MQRankSum=1.338;ReadPosRankSum=1.627;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:4016,327,0:0,0,39,70
chr1	43315531	.	T	C	706.83	PASS	AC=1;AF=0.567;AN=2;DP=436;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant32-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:394,0,687:2,18,5,10
chr1	43393245	.	G	GGGTGAGAAAT	187.73	PASS	AC=1;AF=0.621;AN=2;DP=345;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant11-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:219,0,1245:8,3,6,0
chr1	43418026	.	C	T	656.13	PASS	AC=1;AF=0.852;AN=2;DP=2866;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:977,0,662:12,15,8,24
chr1	43424512	.	C	G	3976.56	PASS	AC=1;AF=0.5;AN=2;DP=199;FS=3.381;FractionInformativeReads=1;MQ=60;MQRankSum=-0.596;QD=19.98;ReadPosRankSum=0.26;SOR=0.966;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:93,106:199:99:4005,0,4674:36,57,35,71
chr1	43424519	.	T	G	2179	PASS	AC=1;AF=0.5;AN=2;DP=2639;MQ=60;set=variant-variant2-variant9-variant10-variant17-variant22-variant26-variant29-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,98:191:99:3785,0,4679:35,58,33,65
chr1	43610910	.	T	G	775.64	PASS	AC=1;AF=0.667;AN=2;DP=3497;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:68,72:140:99:1824,0,1621:35,33,34,38
chr1	43611230	.	G	T	88.71	PASS	AC=1;AF=0.694;AN=2;DP=98;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant10-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:30:123,0,30:0,1,1,2
chr1	43613808	.	A	G	630.99	PASS	AC=1;AF=0.5;AN=2;DP=326;FractionInformativeReads=1;MQ=60;set=variant17-variant27-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,36:68:99:1050,0,860:9,23,12,24
chr1	43618726	.	A	G	1744.19	PASS	AC=1;AF=0.5;AN=2;DP=1220;MQ=60;set=variant11-variant13-variant16-variant17-variant19-variant25-variant27-variant30-variant32-variant33-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,54:104:99:1411,0,1372:17,33,21,33
chr1	43621759	.	G	T	1503.32	PASS	AC=1;AF=0.5;AN=2;DP=1236;MQ=60;set=variant11-variant16-variant17-variant19-variant25-variant27-variant30-variant32-variant33-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,80:120:99:2249,0,916:28,12,51,29
chr1	43632536	.	C	T	2320.56	PASS	AC=1;AF=0.625;AN=2;DP=3990;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:99,87:186:99:1976,0,2348:47,52,40,47
chr1	43632815	.	T	G	2156.29	PASS	AC=1;AF=0.625;AN=2;DP=2432;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,67:138:99:2566,0,3597:34,37,35,32
chr1	43632816	.	T	C	2156.29	PASS	AC=1;AF=0.625;AN=2;DP=2425;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,66:137:99:2566,0,3597:35,36,34,32
chr1	43632997	.	A	G	544.48	PASS	AC=1;AF=0.625;AN=2;DP=674;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:410,0,572:4,15,2,12
chr1	43634867	.	C	T	302.59	PASS	AC=1;AF=0.625;AN=2;DP=545;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:579,0,407:3,11,4,15
chr1	43636484	.	C	G	981.43	PASS	AC=1;AF=0.625;AN=2;DP=2125;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,42:103:99:903,0,1528:27,34,18,24
chr1	43636974	.	C	T	550.3	PASS	AC=1;AF=0.625;AN=2;DP=806;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,9:37:99:269,0,841:18,10,8,1
chr1	43637549	.	A	G	464.44	PASS	AC=1;AF=0.625;AN=2;DP=796;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:697,0,998:23,7,17,6
chr1	43637932	.	T	C	4674.31	PASS	AC=1;AF=0.625;AN=2;DP=6893;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:179,186:365:99:4647,0,4154:80,99,92,94
chr1	43638185	.	A	G	220.22	PASS	AC=1;AF=0.625;AN=2;DP=412;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:360,0,146:4,3,2,9
chr1	43638251	.	A	AG	34.67	PASS	AC=1;AF=0.611;AN=2;DP=65;FS=0;set=variant4-variant7-variant22-variant26-variant27-variant29-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,133:4,0,3,0
chr1	43638255	.	A	AAAGGGGAGGGG	73.18	PASS	AC=1;AF=0.611;AN=2;DP=64;FS=0;set=variant4-variant7-variant22-variant26-variant27-variant29-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:195,0,127:4,0,4,0
chr1	43638334	.	A	T	609.33	PASS	AC=1;AF=0.625;AN=2;DP=627;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:538,0,508:14,2,17,1
chr1	43638410	.	G	C	1283.92	PASS	AC=1;AF=0.625;AN=2;DP=2194;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,57:134:99:1421,0,1803:44,33,33,24
chr1	43638457	.	T	A	1736.15	PASS	AC=1;AF=0.625;AN=2;DP=2864;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,77:157:99:1952,0,1734:42,38,41,36
chr1	43642988	.	G	T	676.14	PASS	AC=1;AF=0.625;AN=2;DP=896;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,14:50:99:315,0,1008:12,24,5,9
chr1	43649508	.	A	G	927.61	PASS	AC=1;AF=0.661;AN=2;DP=2472;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,62:116:99:1578,0,1496:27,27,33,29
chr1	43650741	.	T	C	778.13	PASS	AC=1;AF=0.646;AN=2;DP=1347;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant17-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,27:44:99:711,0,420:11,6,20,7
chr1	43652369	.	T	C	2902.15	PASS	AC=2;AF=1;AN=2;DP=5358;FS=0;MQ=60;MQRankSum=-0.485;ReadPosRankSum=0.596;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,124:125:99:3908,365,0:1,0,74,50
chr1	43663376	.	A	G	1740.15	PASS	AC=2;AF=0.955;AN=2;DP=2934;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1946,186,0:0,0,22,40
chr1	43664119	.	A	G	566.31	PASS	AC=1;AF=0.614;AN=2;DP=781;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:442,0,573:15,8,12,6
chr1	43664218	.	C	T	1256.01	PASS	AC=1;AF=0.614;AN=2;DP=1887;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,46:89:99:1143,0,973:21,22,22,24
chr1	43664319	.	TA	T,TAA	417.06	PASS	AC=1,0;AF=0.587,0.022;AN=2;DP=932;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41	GT:DP:GQ:SB	0/1:45:99:5,12,9,19
chr1	43665255	.	AAG	A	100.79	PASS	AC=1;AF=0.605;AN=2;DP=383;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,5:19:99:157,0,533:2,12,2,3
chr1	43672636	.	T	G	631.42	PASS	AC=1;AF=0.714;AN=2;DP=1362;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant28-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,29:47:99:802,0,500:5,13,10,19
chr1	43675467	.	G	A	2377.63	PASS	AC=2;AF=0.909;AN=2;DP=9610;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,210:210:99:6547,628,0:0,0,101,109
chr1	43676287	.	G	A	264.37	PASS	AC=2;AF=1;AN=2;DP=801;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:270,27,0:0,0,4,5
chr1	43676608	.	C	CA	63.08	PASS	AC=1;AF=0.57;AN=2;DP=954;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:60:201,0,60:2,2,5,5
chr1	43680839	.	T	TG	459.68	PASS	AC=1;AF=0.583;AN=2;DP=763;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:604,0,519:17,4,21,3
chr1	43680855	.	G	A	1849.01	PASS	AC=2;AF=1;AN=2;DP=2533;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2633,209,0:0,0,53,17
chr1	43681184	.	C	T	1066.72	PASS	AC=2;AF=0.909;AN=2;DP=2827;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1616,149,0:0,0,15,35
chr1	43688675	.	G	T	593.36	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0.952;FractionInformativeReads=1;MQ=60;MQRankSum=-0.674;QD=8.48;ReadPosRankSum=0.895;SOR=0.542;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,25:70:99:622,0,1292:18,27,11,14
chr1	43689895	.	C	T	298.97	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=14.075;FractionInformativeReads=1;MQ=60;MQRankSum=-1.333;QD=11.96;ReadPosRankSum=1.224;SOR=0.016;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:327,0,449:0,13,4,8
chr1	43697968	.	G	A	447.98	PASS	AC=1;AF=0.825;AN=2;DP=1827;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:567,0,540:9,13,8,11
chr1	43699813	.	A	G	268.79	PASS	AC=1;AF=0.872;AN=2;DP=788;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:285,0,463:12,2,7,3
chr1	43699935	.	C	T	2121.63	PASS	AC=2;AF=1;AN=2;DP=4775;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,119:120:99:3846,339,0:1,0,62,57
chr1	43700140	.	A	G	6913.96	PASS	AC=1;AF=0.872;AN=2;DP=10437;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:141,116:257:99:2668,0,3391:67,74,58,58
chr1	43738340	.	A	C	4930.89	PASS	AC=1;AF=0.645;AN=2;DP=4719;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,84:157:99:2048,0,1637:33,40,43,41
chr1	43738751	.	A	G	2693.2	PASS	AC=1;AF=0.5;AN=2;DP=164;FS=2.803;FractionInformativeReads=1;MQ=60;MQRankSum=-0.588;QD=16.42;ReadPosRankSum=2.198;SOR=0.724;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,98:164:99:2721,0,1787:35,31,46,52
chr1	43738903	.	G	A	2387.25	PASS	AC=1;AF=0.5;AN=2;DP=167;FS=3.565;FractionInformativeReads=1;MQ=60;MQRankSum=-1.002;QD=14.29;ReadPosRankSum=2.792;SOR=0.779;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:78,89:167:99:2415,0,2274:41,37,41,48
chr1	43747937	.	G	GA	121.49	PASS	AC=2;AF=0.829;AN=2;DP=615;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,8:9:1:182,1,0:1,0,7,1
chr1	43748051	.	A	G	1601.68	PASS	AC=1;AF=0.58;AN=2;DP=1091;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant16-variant17-variant19-variant21-variant24-variant25-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:511,0,377:11,5,13,11
chr1	43748132	.	A	G	1336.78	PASS	AC=2;AF=1;AN=2;DP=2124;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1359,117,0:0,0,25,14
chr1	43751396	.	A	C	92.89	PASS	AC=2;AF=0.682;AN=2;DP=211;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant13-variant15-variant16-variant19-variant28-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:796,60,0:0,0,4,16
chr1	43766587	.	A	C	85.64	PASS	AC=1;AF=0.5;AN=2;DP=501;set=variant4-variant5-variant7-variant9-filterInvariant10-variant17-variant22-variant26-variant28-variant32-variant39-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:18,6:24:99:130,0,1390:4,14,6,0
chr1	43766592	.	CTA	C	73.89	PASS	AC=1;AF=0.5;AN=2;DP=174;MQ=60;set=filterInvariant3-variant5-variant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:35,6:41:73:73,0,2667:16,19,6,0
chr1	43771016	.	TA	T	1065.18	PASS	AC=1;AF=0.718;AN=2;DP=4892;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,61:110:99:1845,0,1400:22,27,21,40
chr1	43771090	.	G	A	415.91	PASS	AC=1;AF=0.718;AN=2;DP=2077;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,29:54:99:772,0,668:10,15,8,21
chr1	43773033	.	A	G	1235.57	PASS	AC=1;AF=0.731;AN=2;DP=3759;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,51:104:99:1570,0,1486:18,35,20,31
chr1	43774292	.	C	T	119.26	PASS	AC=1;AF=0.737;AN=2;DP=345;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:99:99,0,334:8,1,3,0
chr1	43774437	.	G	A	673.66	PASS	AC=1;AF=0.731;AN=2;DP=1423;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:474,0,639:8,12,8,8
chr1	43774878	.	C	T	119.23	PASS	AC=1;AF=0.596;AN=2;DP=568;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:547,0,297:6,6,9,10
chr1	43777852	.	C	T	5504.3	PASS	AC=1;AF=0.875;AN=2;DP=6018;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:77,84:161:99:2672,0,2489:33,44,31,53
chr1	43779564	.	T	C	902.74	PASS	AC=1;AF=0.731;AN=2;DP=5616;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,94:185:99:2491,0,2223:50,41,53,41
chr1	43779869	.	T	G	1351.44	PASS	AC=1;AF=0.731;AN=2;DP=2916;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1144,0,993:22,17,22,24
chr1	43782846	.	G	A	102.87	PASS	AC=1;AF=0.731;AN=2;DP=921;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,21:33:99:552,0,254:5,7,14,7
chr1	43784956	.	A	G	913.72	PASS	AC=1;AF=0.596;AN=2;DP=2621;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,52:113:99:1444,0,1481:34,27,30,22
chr1	43788858	.	C	T	79.19	PASS	AC=1;AF=0.609;AN=2;DP=251;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant32-variant33-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:23:119,0,23:0,1,3,4
chr1	43812075	.	G	A	496.96	PASS	AC=1;AF=0.589;AN=2;DP=1459;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,31:64:99:766,0,899:22,11,21,10
chr1	43814864	.	T	C	633.54	PASS	AC=1;AF=0.596;AN=2;DP=1890;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,44:70:99:1087,0,608:17,9,24,20
chr1	43814992	.	C	CCTG	2718.53	PASS	AC=1;AF=0.5;AN=2;DP=151;FS=1.311;FractionInformativeReads=0.954;MQ=60;MQRankSum=0.284;QD=18;ReadPosRankSum=0.716;SOR=0.826;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:75,69:144:99:2756,0,3193:40,35,39,30
chr1	43825644	.	T	C	1509.01	PASS	AC=1;AF=0.589;AN=2;DP=3224;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,60:115:99:1622,0,1522:34,21,34,26
chr1	43826312	.	C	A	4485.83	PASS	AC=1;AF=0.738;AN=2;DP=17435;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:214,213:427:99:5185,0,5554:104,110,108,105
chr1	43850473	.	A	G	2907.89	PASS	AC=1;AF=0.596;AN=2;DP=4595;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,65:136:99:1658,0,1716:31,40,34,31
chr1	43855546	.	A	G	623.1	PASS	AC=1;AF=0.589;AN=2;DP=3464;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,55:110:99:1223,0,1254:24,31,29,26
chr1	43855578	.	G	C	760.42	PASS	AC=1;AF=0.75;AN=2;DP=4693;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,48:93:99:1128,0,1058:20,25,25,23
chr1	43855684	.	G	A	507.79	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.216;FractionInformativeReads=1;MQ=60;MQRankSum=0.3;QD=12.39;ReadPosRankSum=0.509;SOR=0.986;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:536,0,456:9,11,8,13
chr1	43869235	.	G	C	1270.33	PASS	AC=1;AF=0.583;AN=2;DP=3308;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,56:100:99:1538,0,1068:25,19,35,21
chr1	43872067	.	C	T	1162.82	PASS	AC=1;AF=0.574;AN=2;DP=3053;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,43:104:99:1031,0,1505:35,26,24,19
chr1	43888602	.	G	A	34.48	PASS	AC=1;AF=0.569;AN=2;DP=756;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:246,0,488:6,10,0,8
chr1	43892189	.	G	A	4568.38	PASS	AC=1;AF=0.574;AN=2;DP=12376;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:213,195:408:99:4632,0,5287:92,121,82,113
chr1	43903589	.	G	T	402.15	PASS	AC=1;AF=0.574;AN=2;DP=1165;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:625,0,673:3,19,3,17
chr1	43906896	.	A	G	1205.52	PASS	AC=1;AF=0.574;AN=2;DP=3455;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,51:126:99:1384,0,1883:40,35,29,22
chr1	43909265	.	T	C	857.76	PASS	AC=1;AF=0.574;AN=2;DP=4460;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,66:141:99:1709,0,1782:31,44,28,38
chr1	43912590	.	A	G	342.46	PASS	AC=1;AF=0.577;AN=2;DP=1715;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,34:54:99:887,0,539:11,9,21,13
chr1	43913508	.	C	T	3142.93	PASS	AC=1;AF=0.5;AN=2;DP=264;FS=0.451;FractionInformativeReads=0.992;MQ=60;MQRankSum=2.851;QD=11.91;ReadPosRankSum=-1.208;SOR=0.639;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:133,129:262:99:3171,0,3295:73,60,69,60
chr1	43916642	.	T	C	1210.98	PASS	AC=1;AF=0.725;AN=2;DP=7452;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,114:205:99:3001,0,2263:40,51,53,61
chr1	43917409	.	T	C	1701.96	PASS	AC=1;AF=0.556;AN=2;DP=4061;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,73:137:99:1898,0,1675:31,33,33,40
chr1	43917637	.	G	A	1531.6	PASS	AC=1;AF=0.574;AN=2;DP=5170;set=variant-variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,109:222:99:2628,0,2791:67,46,59,50
chr1	43919413	.	A	G	386.7	PASS	AC=1;AF=0.726;AN=2;DP=2405;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:347,0,457:8,13,8,10
chr1	43998397	.	GT	G	1531.62	PASS	AC=2;AF=1;AN=2;DP=2351;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:932,90,0:0,0,9,21
chr1	44010571	.	A	G	272.07	PASS	AC=1;AF=0.583;AN=2;DP=78;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant26-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:226,0,220:6,1,6,2
chr1	44019305	.	C	T	760.21	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=10.883;FractionInformativeReads=1;MQ=60;MQRankSum=0.057;QD=12.26;ReadPosRankSum=-1.59;SOR=1.145;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,27:62:99:788,0,1005:21,14,10,17
chr1	44019640	.	G	A	1615.89	PASS	AC=1;AF=0.5;AN=2;DP=145;FS=2.248;FractionInformativeReads=1;MQ=60;MQRankSum=-1.197;QD=11.14;ReadPosRankSum=0.006;SOR=0.939;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:79,66:145:99:1644,0,2063:28,51,20,46
chr1	44056462	.	T	C	864.66	PASS	AC=1;AF=0.542;AN=2;DP=878;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:571,0,780:20,3,16,3
chr1	44058265	.	C	A	196.61	PASS	AC=1;AF=0.611;AN=2;DP=1582;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:838,0,807:10,22,12,21
chr1	44058315	.	G	GAC	79.53	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=6.264;FractionInformativeReads=0.611;MQ=60;MQRankSum=0;QD=4.42;ReadPosRankSum=-0.278;SOR=2.833;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:117,0,218:3,4,0,4
chr1	44063250	.	T	C	156.22	PASS	AC=2;AF=0.943;AN=2;DP=653;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:750,63,0:0,0,16,5
chr1	44063404	.	A	C	99.61	PASS	AC=1;AF=0.5;AN=2;DP=1139;set=filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant16-variant18-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant31-filterInvariant33-filterInvariant35-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:49,16:65:99:107,0,1978:13,36,16,0
chr1	44063408	.	G	T	36.58	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=180;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:56,10:66:81:81,0,2088:17,39,10,0
chr1	44071221	.	G	A	4526.21	PASS	AC=1;AF=0.756;AN=2;DP=6626;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,93:156:99:2331,0,1527:24,39,41,52
chr1	44072420	.	A	G	1600.28	PASS	AC=1;AF=0.744;AN=2;DP=2729;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,38:62:99:954,0,568:13,11,22,16
chr1	44075227	.	T	C	275.08	PASS	AC=2;AF=0.977;AN=2;DP=1224;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:988,81,0:0,0,4,23
chr1	44078604	.	A	G	772.98	PASS	AC=1;AF=0.5;AN=2;DP=418;MQ=60;set=variant8-variant13-variant16-variant19-variant22-variant25-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,29:45:99:745,0,393:2,14,8,21
chr1	44083110	.	C	T	2081.98	PASS	AC=1;AF=0.732;AN=2;DP=4174;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,49:99:99:1330,0,1280:31,19,33,16
chr1	44083507	.	T	C	1283.04	PASS	AC=1;AF=0.732;AN=2;DP=4243;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,55:118:99:1438,0,1427:31,32,23,32
chr1	44083519	.	G	A	1109.6	PASS	AC=1;AF=0.732;AN=2;DP=3848;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,49:108:99:1155,0,1570:27,32,20,29
chr1	44084620	.	G	T	610.74	PASS	AC=1;AF=0.5;AN=2;DP=888;FractionInformativeReads=1;MQ=60;set=variant8-variant13-variant16-variant19-variant22-variant25-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,48:103:99:1249,0,1406:32,23,21,27
chr1	44084739	.	C	T	3105.79	PASS	AC=1;AF=0.732;AN=2;DP=6934;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,82:158:99:1936,0,1943:34,42,39,43
chr1	44086080	.	T	C	1701.12	PASS	AC=1;AF=0.732;AN=2;DP=4162;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,50:114:99:1229,0,1626:40,24,32,18
chr1	44087496	.	C	T	3521.7	PASS	AC=1;AF=0.756;AN=2;DP=6138;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,90:167:99:2270,0,2061:52,25,56,34
chr1	44089421	.	C	T	1862.8	PASS	AC=1;AF=0.5;AN=2;DP=127;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.809;QD=14.67;ReadPosRankSum=-0.244;SOR=0.695;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,67:127:99:1891,0,1616:17,43,19,48
chr1	44125962	.	CA	C	1026.11	PASS	AC=1;AF=0.589;AN=2;DP=1797;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,46:80:99:1226,0,851:25,9,32,14
chr1	44126143	.	C	T	1087.68	PASS	AC=1;AF=0.5;AN=2;DP=731;MQ=60;set=variant8-variant13-variant16-variant19-variant22-variant25-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,46:90:99:1184,0,1144:17,27,17,29
chr1	44132074	.	G	A	893.12	PASS	AC=1;AF=0.5;AN=2;DP=596;FractionInformativeReads=1;MQ=60;set=variant7-variant11-variant21-variant25-variant31-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,28:68:99:822,0,1068:25,15,20,8
chr1	44137257	.	C	A	2100.26	PASS	AC=1;AF=0.713;AN=2;DP=4403;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,56:106:99:1518,0,1113:24,26,34,22
chr1	44280381	.	A	T	1368.68	PASS	AC=2;AF=0.898;AN=2;DP=1415;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1244,114,0:0,0,27,11
chr1	44290530	.	A	G	1099.17	PASS	AC=1;AF=0.589;AN=2;DP=3303;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,55:132:99:1285,0,1869:38,39,30,25
chr1	44303786	.	CA	CAAAAAAAAAA,CAAAAAAAAAAAA,CAAAAAAAAA,CAAAAAAAAAAAAA,CAAAAAAAA,CAAAAAAAAAAA,C,CAAAAA,CAAAAAAA	1323.96	PASS	AC=0,0,0,2,0,0,0,0,0;AF=0.226,0.016,0.194,0.065,0.194,0.161,0.016,0.032,0.016;AN=2;DP=535;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	4/4:11:50:1,0,9,1
chr1	44323736	.	T	C	1480.17	PASS	AC=2;AF=0.92;AN=2;DP=2748;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1551,150,0:0,0,32,18
chr1	44344796	.	T	C	1309.12	PASS	AC=1;AF=0.563;AN=2;DP=1923;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11-variant13-variant25-variant27-variant30-variant34-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,57:110:99:1415,0,1415:19,34,23,34
chr1	44360321	.	T	C,G	212.03	PASS	AC=1,0;AF=0.417,0.083;AN=2;DP=140;MQ=60;set=variant7-variant10-variant11-variant25-variant41-variant44	GT:DP:GQ:SB	0/1:25:99:0,10,3,12
chr1	44365529	.	G	A	906.96	PASS	AC=1;AF=0.845;AN=2;DP=1767;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,12:34:99:311,0,665:6,16,3,9
chr1	44386305	.	C	T	377.45	PASS	AC=1;AF=0.881;AN=2;DP=885;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:311,0,174:1,4,3,6
chr1	44386615	.	A	G	1628.99	PASS	AC=1;AF=0.881;AN=2;DP=3669;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,40:94:99:1003,0,1308:20,34,19,21
chr1	44395786	.	C	T	3372.24	PASS	AC=1;AF=0.768;AN=2;DP=5202;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,69:139:99:1889,0,1775:34,36,25,44
chr1	44396646	.	C	G	1969.18	PASS	AC=1;AF=0.768;AN=2;DP=3066;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,40:78:99:1062,0,964:18,20,24,16
chr1	44399176	.	A	T	1801.2	PASS	AC=2;AF=0.989;AN=2;DP=4072;MQ=60;MQRankSum=-0.852;ReadPosRankSum=1.245;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3248,316,0:0,0,53,53
chr1	44399942	.	G	A	381.35	PASS	AC=1;AF=0.763;AN=2;DP=727;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:269,0,226:3,6,6,5
chr1	44401384	.	A	G	3186.67	PASS	AC=1;AF=0.881;AN=2;DP=5552;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,73:141:99:1902,0,1641:34,34,36,37
chr1	44415415	.	C	T	4281.95	PASS	AC=1;AF=0.768;AN=2;DP=9541;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,123:257:99:3009,0,3654:74,60,54,69
chr1	44426025	.	G	A	3003.28	PASS	AC=1;AF=0.78;AN=2;DP=5207;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,58:126:99:1271,0,1737:32,36,26,32
chr1	44426948	.	G	A	1849.08	PASS	AC=2;AF=0.929;AN=2;DP=4944;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3374,326,0:0,0,35,74
chr1	44430108	.	AG	A	267.46	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=0.95;MQ=60;MQRankSum=0.449;QD=13.37;ReadPosRankSum=0.367;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:305,0,344:3,7,2,7
chr1	44431715	.	T	C	1171.93	PASS	AC=1;AF=0.768;AN=2;DP=2208;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,36:56:99:933,0,525:5,15,16,20
chr1	44432500	.	C	G	1124.74	PASS	AC=1;AF=0.768;AN=2;DP=2837;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,20:49:99:567,0,904:12,17,9,11
chr1	44433361	.	C	A	1403.77	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=5.237;FractionInformativeReads=1;MQ=60;MQRankSum=-0.301;QD=10.55;ReadPosRankSum=-3.588;SOR=0.648;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,60:133:99:1432,0,1962:41,32,28,32
chr1	44438961	.	A	G	4086.59	PASS	AC=1;AF=0.5;AN=2;DP=5299;MQ=60;set=variant5-variant8-variant9-variant10-variant12-variant14-variant17-variant18-variant25-variant26-variant28-variant31-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:196,143:339:99:3062,0,4832:100,96,73,70
chr1	44440769	.	G	C	2602.04	PASS	AC=1;AF=0.5;AN=2;DP=1351;MQ=60;set=variant5-variant7-variant11-variant25-variant26-variant31-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,77:161:99:2019,0,2394:45,39,38,39
chr1	44441533	.	A	G	1283.77	PASS	AC=1;AF=0.5;AN=2;DP=1012;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant11-variant25-variant26-variant31-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,60:120:99:1566,0,1638:22,38,22,38
chr1	44442521	.	A	C	3212.21	PASS	AC=1;AF=0.798;AN=2;DP=3709;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,40:85:99:1086,0,1274:17,28,19,21
chr1	44442930	.	A	G	1426.12	PASS	AC=1;AF=0.5;AN=2;DP=1733;MQ=60;set=variant8-variant9-variant10-variant12-variant14-variant17-variant18-variant25-variant28-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,90:176:99:2427,0,2165:45,41,49,41
chr1	44443459	.	G	A	1109.24	PASS	AC=1;AF=0.5;AN=2;DP=1377;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant10-variant12-variant14-variant17-variant18-variant25-variant28-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,60:111:99:1567,0,1169:26,25,38,22
chr1	44443709	.	C	A	1533.36	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=4.125;FractionInformativeReads=1;MQ=60;MQRankSum=-0.32;QD=17.04;ReadPosRankSum=-0.016;SOR=1.145;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,53:90:99:1562,0,948:16,21,18,35
chr1	44443874	.	T	TGAC	2172.27	PASS	AC=1;AF=0.5;AN=2;DP=1077;MQ=60;set=variant7-variant11-variant19-variant25-variant31-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,66:114:99:2701,0,2205:23,25,36,30
chr1	44445008	.	CGCGGCGGCG	C,CGCGGCGGCGGCG	143.41	PASS	AC=0,2;AF=0.5,0.167;AN=2;DP=69;MQ=60;set=variant5-variant11-variant25-variant31-variant41-variant44	GT:DP:GQ:SB	2/2:5:15:0,0,2,3
chr1	44445667	.	T	C	3295.12	PASS	AC=1;AF=0.5;AN=2;DP=2438;MQ=60;set=variant5-variant7-variant11-variant25-variant26-variant31-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,150:272:99:3642,0,2898:73,49,87,63
chr1	44446634	.	A	G	578.52	PASS	AC=2;AF=0.919;AN=2;DP=874;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:771,69,0:0,0,17,6
chr1	44446651	.	T	C	76.44	PASS	AC=2;AF=0.583;AN=2;DP=461;MQ=60;set=variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant25-variant26-variant28-variant31-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:1085,95,0:0,0,25,7
chr1	44447413	.	G	C	2781.42	PASS	AC=1;AF=0.5;AN=2;DP=1857;MQ=60;set=variant5-variant7-variant11-variant25-variant26-variant31-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,94:217:99:2590,0,3622:85,38,66,28
chr1	44451113	.	GGA	G	601.17	PASS	AC=1;AF=0.6;AN=2;DP=55;FS=0;MQ=60;set=variant2-variant4-variant16-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:182,0,169:3,0,5,0
chr1	44451124	.	G	T	700.33	PASS	AC=1;AF=0.75;AN=2;DP=178;set=variant2-variant4-variant9-variant13-variant16-variant21-variant22-variant24-variant28-variant29-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:315,0,167:4,1,8,3
chr1	44455871	.	T	C	2038.43	PASS	AC=1;AF=0.588;AN=2;DP=624;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant10-variant11-variant13-variant18-variant25-variant26-variant30-variant31-variant35-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:562,0,792:21,6,16,6
chr1	44457739	.	T	TC	1271.11	PASS	AC=2;AF=1;AN=2;DP=1891;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1998,162,0:0,0,24,30
chr1	44457823	.	A	C	61.48	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=41;FS=14.728;FractionInformativeReads=0.951;MQ=60;MQRankSum=0.748;QD=1.5;ReadPosRankSum=0.783;SOR=4.047;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:31,8:39:90:90,0,1399:17,14,8,0
chr1	44457830	.	A	C	40.58	PASS	AC=1;AF=0.5;AN=2;DP=170;MQ=60;set=filterInvariant3-variant25-filterInvariant32-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:33,8:41:87:87,0,1431:17,16,8,0
chr1	44459318	.	CAA	CA,C	161.86	PASS	AC=1,0;AF=0.476,0.024;AN=2;DP=1769;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:39:99:15,10,11,3
chr1	44461034	.	G	C	272.91	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=1.922;FractionInformativeReads=1;MQ=60;MQRankSum=0.228;QD=13.65;ReadPosRankSum=2.431;SOR=1.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:301,0,286:4,7,2,7
chr1	44461437	.	A	G	1374.32	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.389;QD=12.27;ReadPosRankSum=-1.515;SOR=0.688;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,47:112:99:1403,0,1669:36,29,26,21
chr1	44462774	.	C	T	917.31	PASS	AC=1;AF=0.5;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant11-variant25-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,43:76:99:1092,0,664:18,15,24,19
chr1	44462997	.	C	T	1450.56	PASS	AC=1;AF=0.5;AN=2;DP=673;MQ=60;set=variant7-variant11-variant25-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,74:128:99:1879,0,1292:26,28,42,32
chr1	44463888	.	T	C	165.5	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:59:243,0,59:1,2,0,6
chr1	44466334	.	T	TC	235.51	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.766;QD=15.7;ReadPosRankSum=0.412;SOR=0.418;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:273,0,167:4,2,5,4
chr1	44466610	.	G	A	4017.39	PASS	AC=1;AF=0.5;AN=2;DP=1849;MQ=60;set=variant7-variant10-variant11-variant25-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:170,145:315:99:3370,0,4095:99,71,79,66
chr1	44467038	.	C	T	3064.1	PASS	AC=1;AF=0.5;AN=2;DP=242;FS=2.176;FractionInformativeReads=0.996;MQ=60;MQRankSum=-0.559;QD=12.66;ReadPosRankSum=3.491;SOR=0.563;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:112,129:241:99:3092,0,2949:49,63,61,68
chr1	44467382	.	T	A	685.45	PASS	AC=1;AF=0.5;AN=2;DP=338;MQ=60;set=variant7-variant10-variant11-variant25-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:709,0,896:9,22,7,19
chr1	44467895	.	G	A	1120.14	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=2.528;FractionInformativeReads=0.991;MQ=60;MQRankSum=-1.447;QD=10.37;ReadPosRankSum=-0.597;SOR=1.025;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,49:107:99:1148,0,1379:30,28,29,20
chr1	44468423	.	C	T	999.09	PASS	AC=1;AF=0.5;AN=2;DP=260;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant11-variant25-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,11:40:99:255,0,957:14,15,4,7
chr1	44468440	.	C	T	1002.35	PASS	AC=1;AF=0.5;AN=2;DP=287;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant11-variant25-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,10:40:99:269,0,902:17,13,5,5
chr1	44476352	.	G	T	796.76	PASS	AC=1;AF=0.5;AN=2;DP=347;MQ=60;set=variant7-variant10-variant11-variant25-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,29:70:99:784,0,1086:28,13,21,8
chr1	44483040	.	AACACACACAC	AACACACAC,AACAC,AAC,AACACAC,A	260.83	PASS	AC=0,0,1,1,0;AF=0.43,0.163,0.105,0.186,0.012;AN=2;DP=1523;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/4:23:99:0,0,3,20
chr1	44489786	.	A	G	1178.13	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.536;QD=19.97;ReadPosRankSum=-0.584;SOR=0.61;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,39:59:99:1206,0,666:17,3,32,7
chr1	44489956	.	G	A	2807.33	PASS	AC=1;AF=0.5;AN=2;DP=1159;MQ=60;set=variant7-variant11-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:136,115:251:99:2820,0,3532:68,68,54,61
chr1	44595183	.	G	T	3247.59	PASS	AC=1;AF=0.5;AN=2;DP=612;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,93:202:99:2428,0,3112:47,62,44,49
chr1	44595708	.	C	T	1966.62	PASS	AC=1;AF=0.5;AN=2;DP=415;MQ=60;set=variant8-variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,71:152:99:2103,0,2302:42,39,28,43
chr1	44600329	.	C	T	380.23	PASS	AC=1;AF=0.604;AN=2;DP=658;MQ=60;set=variant2-variant7-variant8-variant9-variant11-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:253,0,243:7,5,7,1
chr1	44679556	.	A	G	3320.31	PASS	AC=2;AF=0.776;AN=2;DP=4542;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4267,416,0:0,0,59,80
chr1	44681113	.	T	C	283.68	PASS	AC=1;AF=0.58;AN=2;DP=557;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:301,0,226:1,6,1,8
chr1	44684995	.	T	C	718.71	PASS	AC=1;AF=0.58;AN=2;DP=1450;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:645,0,677:14,10,14,10
chr1	44686322	.	T	C	1556.66	PASS	AC=1;AF=0.545;AN=2;DP=2573;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant11-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:79,68:147:99:1657,0,1876:40,39,35,33
chr1	44788398	.	A	T	1784.41	PASS	AC=2;AF=0.966;AN=2;DP=3252;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:2980,311,0:0,0,50,54
chr1	44805012	.	TAAAAAAA	TAAAAAA,T	81.5	PASS	AC=0,2;AF=0.167,0.5;AN=2;DP=38;FS=0;set=variant7-variant10-variant41	GT:DP:GQ:SB	2/2:7:22:0,0,2,5
chr1	44818337	.	G	T	221.11	PASS	AC=1;AF=0.708;AN=2;DP=336;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:49:205,0,49:2,0,5,1
chr1	44871049	.	A	ACTGCTG,ACTGCTGCTG,ACTG	3289.39	PASS	AC=0,1,0;AF=0.4,0.1,0.033;AN=2;DP=2396;set=variant3-variant5-variant7-variant12-variant13-variant19-variant22-variant26-variant28-variant29-variant31-variant33-variant34-variant38-variant41	GT:DP:GQ:SB	0/2:153:99:36,35,43,39
chr1	45088629	.	G	A	1224.31	PASS	AC=1;AF=0.589;AN=2;DP=997;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant18-variant20-variant22-variant23-variant24-variant25-variant28-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,19:45:99:530,0,677:10,16,6,13
chr1	45092025	.	C	A	1454.2	PASS	AC=1;AF=0.5;AN=2;DP=145;FS=0.617;FractionInformativeReads=1;MQ=60;MQRankSum=-1.189;QD=10.03;ReadPosRankSum=-4.955;SOR=0.733;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,64:145:99:1482,0,2052:41,40,31,33
chr1	45092137	.	C	T	612.02	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=2.641;FractionInformativeReads=1;MQ=60;MQRankSum=1.966;QD=11.55;ReadPosRankSum=-0.044;SOR=0.372;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:640,0,794:6,21,8,18
chr1	45097589	.	C	T	468.89	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.055;QD=11.72;ReadPosRankSum=-0.465;SOR=0.619;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:497,0,346:10,7,13,10
chr1	45097639	.	T	C	467.65	PASS	AC=1;AF=0.583;AN=2;DP=1173;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant18-variant20-variant22-variant23-variant24-variant25-variant28-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,29:46:99:644,0,418:8,9,15,14
chr1	45101478	.	T	C	1664	PASS	AC=1;AF=0.589;AN=2;DP=1763;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant18-variant20-variant22-variant23-variant24-variant25-variant28-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,35:63:99:922,0,665:10,18,17,18
chr1	45116883	.	C	T	814.96	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=0;FractionInformativeReads=0.982;MQ=60;MQRankSum=0.429;QD=14.55;ReadPosRankSum=1.548;SOR=0.573;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,35:55:99:843,0,618:9,11,17,18
chr1	45116985	.	C	T	2301.59	PASS	AC=1;AF=0.596;AN=2;DP=1993;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant18-variant22-variant23-variant24-variant28-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:1026,0,942:22,17,24,16
chr1	45117486	.	A	C	116	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=3.136;FractionInformativeReads=1;MQ=60;MQRankSum=-0.937;QD=16.57;ReadPosRankSum=-0.937;SOR=1.492;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:93:144,0,93:2,1,1,3
chr1	45140619	.	CTGGA	C,CTGGATGGA	300.01	PASS	AC=2,0;AF=0.607,0.036;AN=2;DP=753;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:21:64:0,0,2,19
chr1	45170012	.	A	G	1455.54	PASS	AC=1;AF=0.603;AN=2;DP=1636;MQ=60;set=variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,13:41:99:366,0,802:8,20,2,11
chr1	45205323	.	A	G	289	PASS	AC=1;AF=0.563;AN=2;DP=790;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant20-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,19:49:99:466,0,875:22,8,14,5
chr1	45205598	.	T	C	3647.59	PASS	AC=1;AF=0.5;AN=2;DP=4091;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:197,141:338:99:3423,0,5019:85,112,66,75
chr1	45216038	.	C	G	795.38	PASS	AC=1;AF=0.5;AN=2;DP=618;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:473,0,671:16,11,13,8
chr1	45218895	.	A	T	1136.48	PASS	AC=1;AF=0.5;AN=2;DP=1845;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,64:112:99:1674,0,1104:24,24,35,29
chr1	45223901	.	TATTAGCTG	T	1442.37	PASS	AC=1;AF=0.563;AN=2;DP=2007;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant20-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,38:74:99:1458,0,3252:14,22,12,26
chr1	45224007	.	G	T	485.81	PASS	AC=1;AF=0.5;AN=2;DP=479;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:507,0,579:7,15,6,13
chr1	45224998	.	A	C	1245.31	PASS	AC=1;AF=0.5;AN=2;DP=1720;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,57:109:99:1418,0,1313:27,25,29,28
chr1	45226084	.	G	A	1632.78	PASS	AC=1;AF=0.5;AN=2;DP=2361;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:100,90:190:99:2232,0,2380:51,49,40,50
chr1	45241113	.	T	C	976.73	PASS	AC=1;AF=0.563;AN=2;DP=2417;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant20-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,51:111:99:1170,0,1481:35,25,32,19
chr1	45241285	.	C	G	1510.49	PASS	AC=1;AF=0.5;AN=2;DP=1450;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,53:107:99:1231,0,1413:23,31,21,32
chr1	45241587	.	G	A	3184.49	PASS	AC=1;AF=0.5;AN=2;DP=1191;MQ=60;set=variant4-variant18-variant25-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:101,117:218:99:2900,0,2369:61,40,64,53
chr1	45244051	.	T	TG	508.5	PASS	AC=1;AF=0.5;AN=2;DP=929;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,43:76:99:1355,0,979:21,12,24,19
chr1	45266832	.	A	G	1273.5	PASS	AC=1;AF=0.5;AN=2;DP=1063;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,48:87:99:1439,0,1026:12,27,16,32
chr1	45266875	.	CTTT	CTT,CTTTT,CTTTTT,C	108.02	PASS	AC=1,0,0,0;AF=0.211,0.211,0.079,0.026;AN=2;DP=744;set=variant2-filterInvariant3-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant19-filterInvariant20-variant22-variant24-filterInvariant30-variant31-variant35-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:19:76:3,8,1,7
chr1	45269348	.	G	A	1618.69	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=1.804;FractionInformativeReads=1;MQ=60;MQRankSum=-1.339;QD=17.04;ReadPosRankSum=1.339;SOR=0.508;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,60:95:99:1647,0,894:11,24,22,38
chr1	45270024	.	G	C	3591.88	PASS	AC=1;AF=0.5;AN=2;DP=4988;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:211,173:384:99:3985,0,5256:110,101,90,83
chr1	45271097	.	G	A	2756.11	PASS	AC=1;AF=0.5;AN=2;DP=3368;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:98,106:204:99:2545,0,2563:52,46,54,52
chr1	45271912	.	G	A	1497.69	PASS	AC=1;AF=0.5;AN=2;DP=1463;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,46:109:99:1388,0,1779:31,32,15,31
chr1	45279716	.	G	C	251.77	PASS	AC=1;AF=0.568;AN=2;DP=370;MQ=60;set=variant2-variant3-variant6-variant9-variant10-variant11-variant13-variant14-variant17-variant20-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:87:87,0,261:2,6,0,3
chr1	45289376	.	T	C	121.82	PASS	AC=1;AF=0.568;AN=2;DP=275;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant17-variant20-variant21-variant26-variant29-variant30-variant31-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:207,0,272:1,7,2,6
chr1	45291908	.	G	A	2418.74	PASS	AC=1;AF=0.5;AN=2;DP=2456;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:85,82:167:99:2052,0,2452:50,35,45,37
chr1	45293518	.	A	G	1223.42	PASS	AC=1;AF=0.563;AN=2;DP=3196;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant20-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,54:105:99:1501,0,1342:31,20,32,22
chr1	45293752	.	T	C	2522.81	PASS	AC=1;AF=0.5;AN=2;DP=3399;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:160,119:279:99:2915,0,4143:72,88,59,60
chr1	45294156	.	T	C	2305.14	PASS	AC=1;AF=0.563;AN=2;DP=4163;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant20-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,88:156:99:2266,0,1650:31,37,41,47
chr1	45296752	.	C	T	84.66	PASS	AC=1;AF=0.5;AN=2;DP=142;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant14-variant31-variant32-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:182,0,344:2,9,2,5
chr1	45297753	.	A	G	919.79	PASS	AC=1;AF=0.5;AN=2;DP=1257;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant31-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,50:99:99:1216,0,1196:26,23,26,24
chr1	45307506	.	G	A	1898.12	PASS	AC=1;AF=0.542;AN=2;DP=4460;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant20-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:85,88:173:99:2160,0,2194:42,43,47,41
chr1	45308409	.	G	A	770.37	PASS	AC=1;AF=0.542;AN=2;DP=1778;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant20-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,53:77:99:1360,0,531:13,11,31,22
chr1	45323199	.	GA	G,GAA	48.68	PASS	AC=0,1;AF=0.375,0.125;AN=2;DP=102;MQ=60;set=filterInvariant11-variant19-variant27-variant41	GT:DP:GQ:SB	0/2:17:95:8,3,3,3
chr1	45340282	.	C	T	1948.15	PASS	AC=1;AF=0.542;AN=2;DP=3924;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant20-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,72:133:99:1910,0,1497:29,32,35,37
chr1	45362992	.	T	C	420.8	PASS	AC=1;AF=0.643;AN=2;DP=2435;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,19:52:99:387,0,849:18,15,11,8
chr1	45443894	.	T	C	235.33	PASS	AC=1;AF=0.567;AN=2;DP=342;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant19-variant31-variant32-variant33-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:408,0,303:9,3,10,5
chr1	45444038	.	G	A	1778.9	PASS	AC=1;AF=0.567;AN=2;DP=2249;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant19-variant31-variant32-variant33-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,50:131:99:1077,0,2004:45,36,26,24
chr1	45452227	.	G	C	573	PASS	AC=1;AF=0.577;AN=2;DP=2071;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant19-variant20-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,27:76:99:667,0,1304:26,23,12,15
chr1	45468606	.	A	G	1501.08	PASS	AC=1;AF=0.833;AN=2;DP=2145;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,21:50:99:537,0,709:13,16,9,12
chr1	45468631	.	A	T	1496.1	PASS	AC=2;AF=1;AN=2;DP=2081;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1455,138,0:0,0,21,25
chr1	45469176	.	A	T	1530.49	PASS	AC=1;AF=0.5;AN=2;DP=1819;MQ=60;set=variant2-variant3-variant9-variant14-variant19-variant31-variant32-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,94:160:99:2237,0,1564:34,32,52,42
chr1	45470130	.	T	C	365.24	PASS	AC=2;AF=0.942;AN=2;DP=1331;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:907,69,0:0,0,5,18
chr1	45472798	.	TTGTGTGTGTGTGTG	TTGTGTGTG,TTGTGTGTGTG,TTGTGTG,TTGTG,T,TTG	1780.35	PASS	AC=1,1,0,0,0,0;AF=0.352,0.216,0.398,0.011,0.011,0.011;AN=2;DP=2719;set=Intersection	GT:DP:GQ:SB	1/2:36:99:0,0,19,17
chr1	45474008	.	T	C	1604.46	PASS	AC=1;AF=0.563;AN=2;DP=2276;MQ=60;set=variant2-variant3-variant9-variant10-variant11-variant14-variant19-variant27-variant31-variant32-variant33-variant34-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,63:149:99:1496,0,2152:40,46,29,34
chr1	45474157	.	G	A	3229	PASS	AC=1;AF=0.788;AN=2;DP=4609;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,68:145:99:1588,0,1979:46,31,35,33
chr1	45474750	.	A	T	581.68	PASS	AC=1;AF=0.563;AN=2;DP=573;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant10-variant11-variant14-variant19-variant27-variant31-variant32-variant33-variant34-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:858,0,766:10,7,17,4
chr1	45474755	.	C	G	699.31	PASS	AC=1;AF=0.563;AN=2;DP=631;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant10-variant11-variant14-variant19-variant27-variant31-variant32-variant33-variant34-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:842,0,745:9,7,16,7
chr1	45475566	.	A	G	1116.24	PASS	AC=2;AF=1;AN=2;DP=2102;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1779,150,0:0,0,33,17
chr1	45476069	.	C	A	645.43	PASS	AC=2;AF=1;AN=2;DP=1665;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1037,87,0:0,0,18,11
chr1	45476489	.	A	G	1902.18	PASS	AC=1;AF=0.563;AN=2;DP=2255;MQ=60;set=variant2-variant3-variant9-variant10-variant11-variant14-variant19-variant27-variant31-variant32-variant33-variant34-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,50:138:99:1083,0,2154:47,41,25,25
chr1	45476663	.	G	A	1639.73	PASS	AC=1;AF=0.563;AN=2;DP=2062;MQ=60;set=variant2-variant3-variant9-variant10-variant11-variant14-variant19-variant27-variant31-variant32-variant33-variant34-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,59:115:99:1502,0,1483:30,26,31,28
chr1	45477675	.	T	A	82.71	PASS	AC=1;AF=0.607;AN=2;DP=105;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant10-variant11-variant19-variant27-variant32-variant33-variant34-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:64:64,0,81:2,2,1,1
chr1	45478560	.	A	C	42.34	PASS	AC=1;AF=0.5;AN=2;DP=850;MQ=60;set=filterInvariant2-filterInvariant5-filterInvariant9-filterInvariant10-filterInvariant23-filterInvariant24-filterInvariant30-variant32-filterInvariant36-variant37-filterInvariant38-filterInvariant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:59,17:76:83:83,0,980:16,43,16,1
chr1	45479772	.	G	T	1533.13	PASS	AC=1;AF=0.563;AN=2;DP=1804;MQ=60;set=variant2-variant3-variant9-variant10-variant11-variant14-variant19-variant27-variant31-variant32-variant33-variant34-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,43:98:99:1132,0,1493:28,27,22,21
chr1	45479874	.	G	T	1387	PASS	AC=2;AF=1;AN=2;DP=2468;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1889,167,0:0,0,17,39
chr1	45480733	.	C	T	1328.68	PASS	AC=2;AF=1;AN=2;DP=1917;FS=0;MQ=60;MQRankSum=1.209;ReadPosRankSum=0.49;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1285,128,0:0,0,20,23
chr1	45480829	.	T	C	309.37	PASS	AC=1;AF=0.567;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant10-variant11-variant14-variant19-variant27-variant31-variant32-variant33-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:320,0,370:5,7,6,6
chr1	45500294	.	A	G	851.22	PASS	AC=1;AF=0.795;AN=2;DP=976;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:249,0,306:4,7,1,7
chr1	45504858	.	G	T	296.14	PASS	AC=1;AF=0.556;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant11-variant15-variant18-variant25-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:353,0,389:3,11,5,10
chr1	45524213	.	C	T	998.6	PASS	AC=1;AF=0.869;AN=2;DP=4821;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,76:128:99:1995,0,1417:30,22,44,32
chr1	45671599	.	G	A	889.44	PASS	AC=1;AF=0.556;AN=2;DP=461;MQ=60;set=variant-variant4-variant11-variant15-variant18-variant25-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:577,0,670:13,7,11,8
chr1	45671966	.	A	G	2034.29	PASS	AC=2;AF=0.565;AN=2;DP=4185;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant15-variant18-variant19-variant21-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:2,161:163:99:5291,439,0:1,1,64,97
chr1	45796269	.	G	C	2426.22	PASS	AC=2;AF=0.909;AN=2;DP=4104;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3507,329,0:0,0,41,69
chr1	45796354	.	G	T	355.16	PASS	AC=1;AF=0.55;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant13-variant19-variant20-variant27-variant32-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:498,0,689:10,16,7,13
chr1	45797505	.	C	G	802.16	PASS	AC=1;AF=0.583;AN=2;DP=1640;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant17-variant18-variant19-variant20-variant25-variant27-variant30-variant32-variant34-variant35-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,47:88:99:1408,0,1435:4,37,14,33
chr1	45798555	.	T	C	2265.91	PASS	AC=2;AF=0.909;AN=2;DP=6469;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4524,413,0:0,0,68,70
chr1	45804050	.	C	T	1339.73	PASS	AC=1;AF=0.583;AN=2;DP=2021;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant17-variant18-variant19-variant20-variant25-variant27-variant30-variant32-variant34-variant35-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,64:125:99:1722,0,1715:24,37,30,34
chr1	45804416	.	G	GT	142.25	PASS	AC=1;AF=0.6;AN=2;DP=226;set=variant-variant2-variant8-variant11-variant13-variant17-variant19-variant20-variant27-variant30-variant32-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:76:76,0,324:1,7,0,4
chr1	45804422	.	T	TTG	321.45	PASS	AC=1;AF=0.721;AN=2;DP=537;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:324,0,144:0,4,1,7
chr1	45804428	.	TTTG	T	289.62	PASS	AC=1;AF=0.727;AN=2;DP=428;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:324,0,144:0,4,1,7
chr1	45805566	.	G	C	3549.32	PASS	AC=2;AF=1;AN=2;DP=7256;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:5292,498,0:0,0,87,79
chr1	45810091	.	A	G	592.71	PASS	AC=1;AF=0.583;AN=2;DP=1041;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant17-variant18-variant19-variant20-variant25-variant27-variant30-variant32-variant34-variant35-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:564,0,792:17,17,15,10
chr1	45813441	.	T	C	819.97	PASS	AC=1;AF=0.583;AN=2;DP=677;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant17-variant18-variant19-variant20-variant25-variant27-variant30-variant32-variant34-variant35-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:654,0,609:9,11,8,11
chr1	45813820	.	G	A	676.76	PASS	AC=1;AF=0.583;AN=2;DP=970;MQ=60;set=variant-variant2-variant8-variant11-variant13-variant17-variant18-variant19-variant20-variant25-variant27-variant30-variant32-variant34-variant35-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,27:49:99:882,0,640:4,18,5,22
chr1	45864695	.	C	A	164.12	PASS	AC=2;AF=0.656;AN=2;DP=109;FractionInformativeReads=1;set=variant-variant2-variant8-variant11-variant17-variant18-variant19-variant20-variant25-variant27-variant32-variant34-variant35-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,0,3
chr1	45956700	.	C	A	1928.41	PASS	AC=1;AF=0.756;AN=2;DP=7260;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,84:154:99:2052,0,1650:37,33,44,40
chr1	45961327	.	CTTTTTTTTTTTTTT	CTT,C,CT	200.49	PASS	AC=1,0,0;AF=0.204,0.056,0.537;AN=2;DP=267;FS=0;set=variant2-variant4-variant5-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant26-variant29-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:6:99:0,2,1,3
chr1	45961955	.	A	G	1044.75	PASS	AC=1;AF=0.756;AN=2;DP=4260;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,43:106:99:1038,0,1679:37,26,27,16
chr1	45965307	.	G	A	2090.19	PASS	AC=1;AF=0.667;AN=2;DP=6125;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,63:153:99:1555,0,2608:31,59,21,42
chr1	45965340	.	T	C	1055.79	PASS	AC=1;AF=0.756;AN=2;DP=5229;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,53:106:99:1515,0,1610:16,37,20,33
chr1	45965703	.	G	T	466.43	PASS	AC=1;AF=0.756;AN=2;DP=3039;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,48:83:99:1296,0,957:19,16,24,24
chr1	45973435	.	A	AT	197.25	PASS	AC=1;AF=0.768;AN=2;DP=684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:213,0,289:1,8,2,5
chr1	45973928	.	G	A	1429.46	PASS	AC=1;AF=0.667;AN=2;DP=5446;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,89:153:99:2156,0,1391:33,31,42,47
chr1	45975088	.	GT	GTTTTTT,GTTTTTTT,GTTTTT,G,GTTTTTTTT,GTTTTTTTTTTTTTTTTT	859.22	PASS	AC=0,1,0,0,0,0;AF=0.2,0.475,0.038,0.038,0.038,0.013;AN=2;DP=4011;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:66:99:16,24,9,17
chr1	45975739	.	ACT	A	208.69	PASS	AC=2;AF=0.833;AN=2;DP=227;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:486,33,0:0,0,9,2
chr1	45975856	.	C	G	190.38	PASS	AC=1;AF=0.667;AN=2;DP=1120;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,16:22:99:448,0,152:5,1,7,9
chr1	45976147	.	G	A	76.26	PASS	AC=1;AF=0.75;AN=2;DP=742;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:154,0,109:1,3,2,3
chr1	45976263	.	C	CT	334.67	PASS	AC=1;AF=0.744;AN=2;DP=1630;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:487,0,407:7,5,9,5
chr1	45976472	.	G	C	431.96	PASS	AC=1;AF=0.667;AN=2;DP=1677;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,21:57:99:507,0,925:16,20,8,13
chr1	45976587	.	A	G	1266.88	PASS	AC=1;AF=0.756;AN=2;DP=3002;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:514,0,745:12,14,13,8
chr1	45981512	.	T	C	1022.57	PASS	AC=1;AF=0.756;AN=2;DP=4559;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,45:90:99:981,0,1254:23,22,19,26
chr1	45984353	.	G	A	149.16	PASS	AC=1;AF=0.756;AN=2;DP=481;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:277,0,103:3,0,7,0
chr1	46016687	.	T	C	1732.98	PASS	AC=1;AF=0.671;AN=2;DP=4591;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,72:133:99:2144,0,1642:28,33,31,41
chr1	46027355	.	T	C	1728.02	PASS	AC=1;AF=0.643;AN=2;DP=4747;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,61:120:99:1447,0,1482:38,21,35,26
chr1	46035760	.	A	T	546.26	PASS	AC=1;AF=0.629;AN=2;DP=2558;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,41:70:99:1100,0,706:10,19,13,28
chr1	46050004	.	TTCGG	T	2295.87	PASS	AC=2;AF=0.795;AN=2;DP=4956;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:5791,392,0:0,0,42,88
chr1	46057144	.	A	G	128.26	PASS	AC=2;AF=0.923;AN=2;DP=140;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,1,3
chr1	46065998	.	T	C	3160.01	PASS	AC=2;AF=0.966;AN=2;DP=4088;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2890,288,0:0,0,56,40
chr1	46073489	.	G	A	1164.11	PASS	AC=1;AF=0.643;AN=2;DP=3490;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,62:117:99:1647,0,1374:25,30,32,30
chr1	46078630	.	A	G	84.37	PASS	AC=2;AF=0.803;AN=2;DP=567;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:733,63,0:0,0,17,4
chr1	46078854	.	A	G	759.56	PASS	AC=2;AF=0.795;AN=2;DP=2945;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,72:73:99:2052,172,0:1,0,30,42
chr1	46078884	.	C	T	613.07	PASS	AC=2;AF=0.795;AN=2;DP=2840;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2213,203,0:0,0,28,40
chr1	46080220	.	GT	G	478.74	PASS	AC=2;AF=0.795;AN=2;DP=1597;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1244,123,0:0,0,7,34
chr1	46080530	.	T	C	509.1	PASS	AC=1;AF=0.629;AN=2;DP=1611;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:413,0,624:17,7,11,7
chr1	46080947	.	A	C	1022.9	PASS	AC=2;AF=0.795;AN=2;DP=4512;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3193,309,0:0,0,53,50
chr1	46081940	.	T	A	3073.33	PASS	AC=2;AF=0.966;AN=2;DP=3685;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2586,240,0:0,0,45,35
chr1	46081960	.	C	T	552.55	PASS	AC=2;AF=0.795;AN=2;DP=3408;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,81:82:99:2553,234,0:0,1,44,37
chr1	46082431	.	C	A	1489.5	PASS	AC=2;AF=0.795;AN=2;DP=5530;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4823,464,0:0,0,68,87
chr1	46083706	.	C	G	2196.86	PASS	AC=1;AF=0.5;AN=2;DP=2117;MQ=60;set=variant3-variant5-variant9-variant12-variant15-variant16-variant18-variant20-variant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,61:118:99:1376,0,1399:29,28,26,35
chr1	46084383	.	G	T	1414.91	PASS	AC=1;AF=0.5;AN=2;DP=1134;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant12-variant15-variant16-variant18-variant20-variant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,22:64:99:615,0,1193:24,18,16,6
chr1	46084614	.	C	CTTT,CTTTT	2374.94	PASS	AC=1,1;AF=0.577,0.218;AN=2;DP=5531;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:116:99:0,0,40,76
chr1	46085852	.	C	T	606.34	PASS	AC=2;AF=0.795;AN=2;DP=2488;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1847,159,0:0,0,39,14
chr1	46085879	.	C	G	652.05	PASS	AC=2;AF=0.795;AN=2;DP=3031;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2485,237,0:0,0,46,33
chr1	46086077	.	C	T	803.36	PASS	AC=2;AF=0.795;AN=2;DP=3949;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3473,321,0:0,0,55,52
chr1	46086329	.	C	T	1287.62	PASS	AC=1;AF=0.5;AN=2;DP=1791;MQ=60;set=variant3-variant5-variant9-variant12-variant13-variant15-variant16-variant18-variant20-variant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,56:94:99:1494,0,990:23,15,32,24
chr1	46086913	.	C	T	501.96	PASS	AC=2;AF=0.795;AN=2;DP=1973;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2078,185,0:0,0,37,25
chr1	46087577	.	G	A	3681.26	PASS	AC=2;AF=0.795;AN=2;DP=10006;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,241:241:99:7639,717,0:0,0,77,164
chr1	46087879	.	A	G	431.1	PASS	AC=2;AF=0.795;AN=2;DP=2996;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2462,243,0:0,0,47,34
chr1	46089225	.	C	G	1696.73	PASS	AC=2;AF=0.795;AN=2;DP=7074;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5467,525,0:0,0,97,78
chr1	46089801	.	G	A	222.13	PASS	AC=2;AF=0.811;AN=2;DP=638;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:526,36,0:0,0,4,8
chr1	46093396	.	GA	G	415.6	PASS	AC=1;AF=0.5;AN=2;DP=528;set=variant3-variant5-variant9-variant12-variant13-variant15-variant16-variant18-variant20-filterInvariant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:123,0,237:3,7,3,3
chr1	46094236	.	A	G	318.53	PASS	AC=1;AF=0.673;AN=2;DP=165;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,109:0,3,0,2
chr1	46095989	.	T	C	457.08	PASS	AC=1;AF=0.5;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant12-variant15-variant16-variant18-variant20-variant23-variant24-variant28-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,22:28:99:760,0,148:5,1,18,4
chr1	46096442	.	CA	C	1303.92	PASS	AC=1;AF=0.989;AN=2;DP=1774;FS=0;MQ=60;MQRankSum=1.195;ReadPosRankSum=-0.46;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:472,0,650:7,16,5,13
chr1	46124663	.	A	G	3015.21	PASS	AC=1;AF=0.629;AN=2;DP=3298;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,47:92:99:1179,0,1022:29,16,28,19
chr1	46153203	.	G	A	1869.55	PASS	AC=1;AF=0.629;AN=2;DP=1689;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:645,0,507:9,9,9,12
chr1	46159108	.	A	C	2239.47	PASS	AC=1;AF=0.5;AN=2;DP=178;FS=4.326;FractionInformativeReads=1;MQ=59.88;MQRankSum=-1.464;QD=12.58;ReadPosRankSum=1.642;SOR=0.615;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,98:178:99:2268,0,1824:36,44,51,47
chr1	46216292	.	C	A	240.25	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=6.204;FractionInformativeReads=1;MQ=60;MQRankSum=-1.493;QD=10.01;ReadPosRankSum=-1.435;SOR=1.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:268,0,388:6,8,7,3
chr1	46269352	.	T	G	1410.59	PASS	AC=2;AF=1;AN=2;DP=2440;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1494,158,0:0,0,28,25
chr1	46290311	.	GTA	G	2563.69	PASS	AC=1;AF=0.625;AN=2;DP=1510;MQ=60;set=variant-variant2-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,30:70:99:1103,0,1556:13,27,6,24
chr1	46347879	.	T	A	151.77	PASS	AC=2;AF=0.926;AN=2;DP=167;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant32-variant34-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:239,21,0:0,0,5,2
chr1	46347910	.	G	A	639.53	PASS	AC=1;AF=0.81;AN=2;DP=680;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:300,0,249:6,3,8,2
chr1	46348229	.	C	G	736.34	PASS	AC=1;AF=0.625;AN=2;DP=530;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:489,0,590:9,14,5,14
chr1	46379518	.	A	G	3379.99	PASS	AC=1;AF=0.795;AN=2;DP=5965;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,63:125:99:1845,0,1582:32,30,29,34
chr1	46424924	.	G	C	970.45	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0.956;FractionInformativeReads=1;MQ=60;MQRankSum=1.565;QD=15.4;ReadPosRankSum=-2.903;SOR=0.755;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:999,0,583:15,14,16,18
chr1	46424964	.	G	A	2447.99	PASS	AC=2;AF=1;AN=2;DP=3191;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2306,221,0:0,0,45,29
chr1	46476587	.	T	G	2687.02	PASS	AC=1;AF=0.795;AN=2;DP=5290;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:60,42:102:99:983,0,1516:27,33,16,26
chr1	46485562	.	C	T	106.21	PASS	AC=1;AF=0.788;AN=2;DP=406;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:298,0,298:1,8,1,8
chr1	46487560	.	A	G	2695.1	PASS	AC=1;AF=0.763;AN=2;DP=4822;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,69:118:99:1755,0,1218:29,20,37,32
chr1	46491635	.	C	T	716.6	PASS	AC=1;AF=0.763;AN=2;DP=1712;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:748,0,726:5,18,6,21
chr1	46495024	.	G	A	1151.61	PASS	AC=1;AF=0.526;AN=2;DP=1529;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,36:80:99:751,0,1132:28,16,21,15
chr1	46495434	.	G	A	565.39	PASS	AC=2;AF=0.645;AN=2;DP=1951;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2500,240,0:0,0,45,35
chr1	46496709	.	A	G	666.3	PASS	AC=1;AF=0.776;AN=2;DP=2416;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,40:68:99:1043,0,735:14,14,20,20
chr1	46498375	.	A	G	807.79	PASS	AC=2;AF=0.789;AN=2;DP=3831;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3897,380,0:0,0,48,79
chr1	46500613	.	T	C	2081.54	PASS	AC=1;AF=0.5;AN=2;DP=2300;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant15-variant16-variant18-variant20-variant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,57:147:99:1376,0,2479:47,43,30,27
chr1	46507042	.	G	GA	315.77	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=1.412;FractionInformativeReads=0.969;MQ=60;MQRankSum=0.296;QD=9.87;ReadPosRankSum=0.968;SOR=1.082;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:353,0,326:8,7,10,6
chr1	46508769	.	A	G	1100.34	PASS	AC=1;AF=0.776;AN=2;DP=3889;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,55:104:99:1817,0,1442:17,32,13,42
chr1	46508785	.	G	GT	865.95	PASS	AC=1;AF=0.5;AN=2;DP=1524;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant15-variant16-variant18-variant20-variant23-variant24-variant28-variant30-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,38:73:99:869,0,825:11,24,8,30
chr1	46511487	.	G	C	197.35	PASS	AC=1;AF=0.8;AN=2;DP=472;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:225,0,377:10,0,6,2
chr1	46521517	.	G	A	928.46	PASS	AC=1;AF=0.776;AN=2;DP=3439;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,42:85:99:1193,0,1087:15,28,15,27
chr1	46521559	.	A	T	880.67	PASS	AC=2;AF=0.789;AN=2;DP=2766;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1911,182,0:0,0,21,40
chr1	46598253	.	G	A	4124.49	PASS	AC=1;AF=0.5;AN=2;DP=264;FS=3.576;FractionInformativeReads=0.996;MQ=60;MQRankSum=0.722;QD=15.62;ReadPosRankSum=2.892;SOR=0.758;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,171:263:99:4153,0,2211:44,48,91,80
chr1	46598273	.	A	C	6571.55	PASS	AC=1;AF=0.776;AN=2;DP=11664;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,106:296:99:2686,0,4423:101,89,55,51
chr1	46655100	.	T	C	537.12	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=2.212;FractionInformativeReads=1;MQ=60;MQRankSum=-0.486;QD=9.1;ReadPosRankSum=-1.628;SOR=0.734;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,24:59:99:565,0,924:19,16,11,13
chr1	46655158	.	T	C	1956.67	PASS	AC=2;AF=1;AN=2;DP=3580;FS=0;MQ=60;MQRankSum=1.504;ReadPosRankSum=0.524;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2069,207,0:0,0,34,35
chr1	46655495	.	G	T	245.33	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=1.289;FractionInformativeReads=1;MQ=60;MQRankSum=-0.279;QD=4.63;ReadPosRankSum=-2.119;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,13:53:99:274,0,1220:27,13,8,5
chr1	46658328	.	A	G	1173.55	PASS	AC=1;AF=0.556;AN=2;DP=2342;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,39:88:99:1426,0,3068:21,28,14,25
chr1	46658343	.	G	A	967.2	PASS	AC=1;AF=0.556;AN=2;DP=2141;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,39:86:99:1515,0,2995:21,26,14,25
chr1	46659104	.	T	C	445.22	PASS	AC=1;AF=0.556;AN=2;DP=1346;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:669,0,888:12,19,5,17
chr1	46659363	.	T	C	1559.37	PASS	AC=1;AF=0.556;AN=2;DP=3265;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,49:97:99:1312,0,1392:24,24,27,22
chr1	46659636	.	C	G	858.92	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=3.031;FractionInformativeReads=1;MQ=60;MQRankSum=-0.846;QD=10.74;ReadPosRankSum=-0.972;SOR=0.43;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,36:80:99:887,0,1270:15,29,15,21
chr1	46660295	.	T	C	1288.9	PASS	AC=1;AF=0.556;AN=2;DP=3409;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,57:106:99:1605,0,1094:20,29,19,38
chr1	46661776	.	G	A	232.46	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.882;QD=8.94;ReadPosRankSum=1.194;SOR=0.566;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:261,0,464:5,10,4,7
chr1	46662609	.	A	C	3077.45	PASS	AC=1;AF=0.5;AN=2;DP=217;FS=3.065;FractionInformativeReads=0.995;MQ=60;MQRankSum=-0.426;QD=14.18;ReadPosRankSum=2.743;SOR=0.929;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:106,110:216:99:3106,0,2818:50,56,46,64
chr1	46686631	.	C	T	1142.86	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.71;QD=16.1;ReadPosRankSum=0.736;SOR=0.749;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,40:71:99:1171,0,842:19,12,25,15
chr1	46713698	.	A	C	58.88	PASS	AC=1;AF=0.5;AN=2;DP=164;MQ=60;set=variant7-variant11-variant19-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:98:98,0,783:2,13,5,0
chr1	46715874	.	C	CA	261.41	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=2.114;FractionInformativeReads=0.962;MQ=60;MQRankSum=-1.692;QD=10.05;ReadPosRankSum=1.359;SOR=1.675;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:299,0,487:4,11,1,9
chr1	46747301	.	T	C	595.43	PASS	AC=1;AF=0.577;AN=2;DP=543;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant20-variant21-variant23-variant24-variant28-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:356,0,315:5,8,2,8
chr1	46782192	.	A	G	1262.03	PASS	AC=1;AF=0.5;AN=2;DP=97;FS=3.906;FractionInformativeReads=1;MQ=60;MQRankSum=-1.928;QD=13.01;ReadPosRankSum=-0.423;SOR=0.395;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,52:97:99:1290,0,1363:30,15,30,22
chr1	46806242	.	G	T	1323.47	PASS	AC=1;AF=0.565;AN=2;DP=2280;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1302,0,1251:17,27,20,29
chr1	46806274	.	CAG	C	1776.48	PASS	AC=1;AF=0.565;AN=2;DP=2013;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,38:75:99:1482,0,1449:15,22,15,23
chr1	46806393	.	T	C	664.8	PASS	AC=1;AF=0.565;AN=2;DP=2104;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,41:91:99:1029,0,1192:24,26,18,23
chr1	46806429	.	A	T	666.37	PASS	AC=1;AF=0.565;AN=2;DP=2108;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,42:79:99:1070,0,745:20,17,18,24
chr1	46806480	.	C	T	631.01	PASS	AC=1;AF=0.565;AN=2;DP=1996;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,39:69:99:1095,0,770:14,16,18,21
chr1	46806550	.	C	T	922.84	PASS	AC=1;AF=0.565;AN=2;DP=2097;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,42:69:99:1110,0,685:14,13,21,21
chr1	46806703	.	A	G	320.4	PASS	AC=1;AF=0.565;AN=2;DP=1597;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,34:54:99:853,0,434:10,10,15,19
chr1	46806959	.	C	T	283.44	PASS	AC=1;AF=0.6;AN=2;DP=307;MQ=60;set=variant2-variant4-variant9-variant10-variant14-variant17-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:258,0,194:2,5,1,6
chr1	46810405	.	TG	T	963.96	PASS	AC=1;AF=0.568;AN=2;DP=1575;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,34:70:99:900,0,961:23,13,22,12
chr1	46810530	.	A	G	1911.71	PASS	AC=1;AF=0.596;AN=2;DP=4184;MQ=60;set=variant2-variant4-variant9-variant10-variant14-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,82:156:99:2079,0,1720:45,29,42,40
chr1	46810670	.	T	C	1487.94	PASS	AC=1;AF=0.568;AN=2;DP=3298;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,82:144:99:2175,0,1481:29,33,39,43
chr1	46810842	.	C	T	159.12	PASS	AC=1;AF=0.568;AN=2;DP=558;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,26:49:99:772,0,616:6,17,6,20
chr1	46812339	.	C	T	250.65	PASS	AC=1;AF=0.575;AN=2;DP=269;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,240:6,0,3,1
chr1	46812360	.	C	T	562.79	PASS	AC=1;AF=0.571;AN=2;DP=437;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:351,0,351:8,0,7,2
chr1	46812374	.	T	C	644.8	PASS	AC=1;AF=0.571;AN=2;DP=546;FractionInformativeReads=1;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:391,0,444:11,1,7,3
chr1	46812444	.	A	G	1283.88	PASS	AC=1;AF=0.568;AN=2;DP=1652;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,37:79:99:920,0,1179:26,16,22,15
chr1	46812519	.	A	G	1595.9	PASS	AC=1;AF=0.568;AN=2;DP=2810;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,64:132:99:1467,0,1717:38,30,34,30
chr1	46812852	.	G	A	407.08	PASS	AC=1;AF=0.588;AN=2;DP=210;MQ=60;set=variant5-variant7-variant9-variant12-variant13-variant16-variant21-variant23-variant29-variant30-variant33-variant34-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:455,0,202:0,6,1,11
chr1	46812888	.	C	T	133.04	PASS	AC=1;AF=0.676;AN=2;DP=114;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant9-variant13-variant16-variant21-variant23-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:211,0,142:1,4,1,5
chr1	46818442	.	G	A	317.85	PASS	AC=1;AF=0.568;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:315,0,215:4,0,6,2
chr1	46818452	.	A	G	311.84	PASS	AC=1;AF=0.568;AN=2;DP=393;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:298,0,272:6,0,6,2
chr1	46818479	.	C	T	281.07	PASS	AC=1;AF=0.568;AN=2;DP=563;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:292,0,226:7,1,6,5
chr1	46818508	.	T	C	491.67	PASS	AC=1;AF=0.568;AN=2;DP=859;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:394,0,645:17,4,9,6
chr1	46818836	.	T	C	345.58	PASS	AC=1;AF=0.568;AN=2;DP=732;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:451,0,443:4,12,6,7
chr1	46818898	.	T	C	153.14	PASS	AC=1;AF=0.568;AN=2;DP=361;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:186,0,236:2,7,4,3
chr1	46818921	.	A	C	486	PASS	AC=1;AF=0.625;AN=2;DP=189;MQ=60;set=variant5-variant6-variant7-variant9-variant13-variant15-variant16-variant21-variant24-variant33-variant34-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:95:202,0,95:1,3,4,4
chr1	46826587	.	C	A	644.74	PASS	AC=1;AF=0.568;AN=2;DP=1076;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,33:51:99:967,0,438:6,12,8,25
chr1	46827214	.	A	C	1126.24	PASS	AC=2;AF=1;AN=2;DP=1449;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1286,105,0:0,0,27,8
chr1	46827485	.	C	T	1789.16	PASS	AC=1;AF=0.568;AN=2;DP=2692;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,38:95:99:942,0,1421:28,29,14,24
chr1	46827728	.	A	C	597.01	PASS	AC=1;AF=0.568;AN=2;DP=1114;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,30:55:99:847,0,584:11,14,10,20
chr1	46827769	.	C	T	501.22	PASS	AC=1;AF=0.568;AN=2;DP=942;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-filterInvariant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:552,0,603:11,13,6,15
chr1	46827871	.	G	A	129.03	PASS	AC=1;AF=0.568;AN=2;DP=270;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:115,0,204:3,5,0,4
chr1	46860237	.	G	A	1813.54	PASS	AC=1;AF=0.568;AN=2;DP=2611;set=variant-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,56:112:99:1274,0,1445:27,29,29,27
chr1	46860415	.	A	G	305.52	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=1.617;FractionInformativeReads=1;MQ=60;MQRankSum=0.205;QD=11.75;ReadPosRankSum=2.205;SOR=0.425;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:334,0,365:3,10,4,9
chr1	46871986	.	T	C	2373.43	PASS	AC=2;AF=0.875;AN=2;DP=10955;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,273:273:99:8132,817,0:0,0,153,120
chr1	46877180	.	G	A	520.48	PASS	AC=1;AF=0.565;AN=2;DP=2005;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,53:109:99:1216,0,1309:31,25,25,28
chr1	46878564	.	G	A	480.95	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=1.47;FractionInformativeReads=1;MQ=60;MQRankSum=-0.384;QD=15.03;ReadPosRankSum=1.573;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:509,0,397:9,4,11,8
chr1	46879562	.	T	G	959.27	PASS	AC=1;AF=0.779;AN=2;DP=2379;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,32:63:99:917,0,836:12,19,9,23
chr1	46978497	.	C	T	91.91	PASS	AC=2;AF=0.538;AN=2;DP=391;FractionInformativeReads=1;MQ=60;set=variant2-variant13-variant20-variant21-variant23-variant25-variant28-variant31-variant33-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:944,95,0:0,0,12,20
chr1	46978946	.	C	T	920.73	PASS	AC=2;AF=0.538;AN=2;DP=910;FractionInformativeReads=1;MQ=60;set=variant2-variant13-variant20-variant21-variant23-variant25-variant28-variant31-variant33-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1972,189,0:0,0,29,34
chr1	47013180	.	A	G	4737.81	PASS	AC=1;AF=0.814;AN=2;DP=8793;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,88:196:99:2115,0,2721:52,56,46,42
chr1	47013364	.	T	C	2855.38	PASS	AC=2;AF=0.989;AN=2;DP=4195;MQ=60;MQRankSum=-0.926;ReadPosRankSum=2.695;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2922,263,0:0,0,33,55
chr1	47015515	.	C	T	453.21	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=3.324;FractionInformativeReads=1;MQ=60;MQRankSum=-0.306;QD=6.47;ReadPosRankSum=-0.929;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,28:70:99:481,0,1001:21,21,17,11
chr1	47016512	.	G	A	34.2	PASS	AC=2;AF=0.607;AN=2;DP=103;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant13-variant20-variant21-variant23-variant25-variant31-variant32-variant33-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:221,18,0:0,0,5,1
chr1	47016917	.	C	T	1140.64	PASS	AC=1;AF=0.5;AN=2;DP=413;FractionInformativeReads=1;MQ=60;set=variant13-variant21-variant25-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,49:79:99:1261,0,776:11,19,21,28
chr1	47023531	.	C	A	3041.27	PASS	AC=1;AF=0.625;AN=2;DP=3701;MQ=60;set=variant3-variant4-variant5-variant6-variant10-variant13-variant14-variant15-variant21-variant24-variant26-variant28-variant31-variant32-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,73:186:99:1703,0,2755:66,47,44,29
chr1	47028728	.	G	C	305.06	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=1.641;FractionInformativeReads=1;MQ=60;MQRankSum=-1.357;QD=12.71;ReadPosRankSum=-0.202;SOR=1.075;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:333,0,319:4,8,3,9
chr1	47033934	.	C	T	209.34	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.733;QD=14.95;ReadPosRankSum=1.733;SOR=1.002;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:238,0,117:3,2,6,3
chr1	47040766	.	T	A	85.73	PASS	AC=1;AF=0.5;AN=2;DP=36;FractionInformativeReads=1;MQ=60;set=variant2-variant18-variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,2:9:63:63,0,189:2,5,0,2
chr1	47046035	.	T	G	2451.15	PASS	AC=1;AF=0.5;AN=2;DP=857;FractionInformativeReads=1;MQ=60;set=variant2-variant18-variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:122,108:230:99:2663,0,2908:73,49,62,46
chr1	47046465	.	AC	A	337	PASS	AC=1;AF=0.614;AN=2;DP=388;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant24-variant25-variant26-variant28-variant31-variant32-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:398,0,254:1,8,3,10
chr1	47049059	.	T	C	1315.57	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=3.269;FractionInformativeReads=1;MQ=60;MQRankSum=0.473;QD=16.65;ReadPosRankSum=0.788;SOR=0.352;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,50:79:99:1344,0,779:9,20,21,29
chr1	47059934	.	T	C	3858.4	PASS	AC=2;AF=1;AN=2;DP=4778;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3797,381,0:0,0,59,68
chr1	47060078	.	G	A	313.28	PASS	AC=1;AF=0.614;AN=2;DP=356;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant21-variant24-variant25-variant26-variant28-variant31-variant32-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:216,0,425:1,11,1,7
chr1	47069730	.	A	G	1018.05	PASS	AC=1;AF=0.662;AN=2;DP=1544;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:768,0,442:11,6,20,8
chr1	47069845	.	T	A	847.95	PASS	AC=1;AF=0.5;AN=2;DP=114;FS=0.726;FractionInformativeReads=1;MQ=60;MQRankSum=-0.905;QD=7.44;ReadPosRankSum=-1.101;SOR=0.772;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:74,40:114:99:876,0,1686:41,33,23,17
chr1	47074141	.	A	T	995.01	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=2.056;FractionInformativeReads=1;MQ=60;MQRankSum=-0.301;QD=15.31;ReadPosRankSum=-1.051;SOR=0.968;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,39:65:99:1023,0,599:13,13,22,17
chr1	47074621	.	G	C	1470.79	PASS	AC=2;AF=1;AN=2;DP=2021;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1509,144,0:0,0,25,23
chr1	47074774	.	T	A	1315.52	PASS	AC=2;AF=1;AN=2;DP=615;FS=0;MQ=60;MQRankSum=1.141;ReadPosRankSum=1.395;set=variant2-variant5-variant8-variant11-variant13-variant26-variant31-variant32-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1790,182,0:0,0,31,30
chr1	47075932	.	C	T	910.89	PASS	AC=2;AF=0.625;AN=2;DP=1406;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant21-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1279,113,0:0,0,8,30
chr1	47078637	.	T	C	9133.26	PASS	AC=2;AF=0.676;AN=2;DP=11730;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,296:296:99:9072,888,0:0,0,162,134
chr1	47080665	.	C	T	1945.08	PASS	AC=1;AF=0.609;AN=2;DP=2544;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant21-variant24-variant25-variant26-variant28-variant31-variant32-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,28:94:99:681,0,1726:34,32,11,17
chr1	47080679	.	G	A	3125.08	PASS	AC=2;AF=0.682;AN=2;DP=3418;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2915,276,0:0,0,42,50
chr1	47080741	.	C	T	1085.16	PASS	AC=2;AF=0.63;AN=2;DP=1728;MQ=60;set=variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant18-variant21-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2479,231,0:0,0,32,45
chr1	47081137	.	C	A	637.63	PASS	AC=1;AF=0.5;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,19:49:99:468,0,724:13,17,8,11
chr1	47082079	.	A	C	481.41	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=0;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:287,0,571:9,14,6,9
chr1	47099090	.	G	GA	3348.56	PASS	AC=1;AF=0.667;AN=2;DP=10531;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,121:235:99:2766,0,2671:66,48,66,55
chr1	47099346	.	C	A	5441.01	PASS	AC=2;AF=0.989;AN=2;DP=6364;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4992,426,0:0,0,58,84
chr1	47099721	.	T	C	189.81	PASS	AC=1;AF=0.667;AN=2;DP=856;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-filterInvariant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:450,0,421:9,7,6,10
chr1	47100049	.	C	T	287.99	PASS	AC=2;AF=0.989;AN=2;DP=590;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:356,27,0:0,0,1,8
chr1	47101015	.	C	A	1026.69	PASS	AC=2;AF=0.989;AN=2;DP=1657;FS=0;MQ=60;MQRankSum=1.588;ReadPosRankSum=-1.241;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1516,144,0:0,0,25,23
chr1	47108828	.	T	C	1396.8	PASS	AC=2;AF=0.989;AN=2;DP=1541;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1095,102,0:0,0,21,13
chr1	47109089	.	A	G	1076.33	PASS	AC=1;AF=0.667;AN=2;DP=2522;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:828,0,897:13,22,8,21
chr1	47110668	.	G	C	321.04	PASS	AC=1;AF=0.671;AN=2;DP=1074;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:364,0,216:7,4,9,7
chr1	47110712	.	C	T	472.38	PASS	AC=1;AF=0.667;AN=2;DP=1710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:497,0,653:17,8,12,11
chr1	47110766	.	G	GC	1757.53	PASS	AC=2;AF=0.989;AN=2;DP=2726;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2387,193,0:0,0,38,26
chr1	47118067	.	G	A	439.81	PASS	AC=1;AF=0.581;AN=2;DP=697;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:222,0,422:8,2,6,0
chr1	47118096	.	C	A	845.22	PASS	AC=1;AF=0.565;AN=2;DP=1268;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:556,0,780:17,4,15,3
chr1	47118168	.	C	T	1843.87	PASS	AC=1;AF=0.569;AN=2;DP=4048;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,72:147:99:2787,0,3080:44,31,42,30
chr1	47118189	.	G	T	2226.26	PASS	AC=1;AF=0.581;AN=2;DP=5312;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,85:176:99:3113,0,3514:53,38,48,37
chr1	47124204	.	C	CA	928.11	PASS	AC=1;AF=0.581;AN=2;DP=1837;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:530,0,788:17,10,13,7
chr1	47124479	.	A	G	538.18	PASS	AC=1;AF=0.581;AN=2;DP=1350;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:484,0,430:5,12,5,13
chr1	47130873	.	A	G	283.91	PASS	AC=2;AF=0.597;AN=2;DP=1536;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1731,162,0:0,0,31,23
chr1	47133811	.	T	C	1228.86	PASS	AC=1;AF=0.852;AN=2;DP=2236;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:433,0,497:13,12,10,10
chr1	47138444	.	C	T	1021.64	PASS	AC=2;AF=1;AN=2;DP=1265;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1010,81,0:0,0,25,2
chr1	47138819	.	T	G	1614.71	PASS	AC=1;AF=0.581;AN=2;DP=7047;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,126:234:99:3633,0,2731:52,56,53,73
chr1	47139103	.	C	T	2027.48	PASS	AC=1;AF=0.565;AN=2;DP=6688;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,97:194:99:2296,0,2491:38,59,43,54
chr1	47140785	.	T	C	530.82	PASS	AC=1;AF=0.581;AN=2;DP=1003;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:644,0,806:22,6,22,3
chr1	47141718	.	T	C	5377.31	PASS	AC=1;AF=0.852;AN=2;DP=6318;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:57,56:113:99:1514,0,1604:32,25,27,29
chr1	47142538	.	G	A	1859.8	PASS	AC=1;AF=0.565;AN=2;DP=4471;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,75:129:99:2063,0,1337:20,34,31,44
chr1	47142543	.	G	GA	1489.84	PASS	AC=1;AF=0.563;AN=2;DP=4353;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,55:104:99:1202,0,1093:15,34,22,33
chr1	47143480	.	C	T	1952.62	PASS	AC=1;AF=0.565;AN=2;DP=3596;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,69:137:99:1878,0,1790:44,24,50,19
chr1	47143547	.	A	G	3909.14	PASS	AC=1;AF=0.581;AN=2;DP=7460;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,125:255:99:3203,0,3370:74,56,69,56
chr1	47154272	.	C	T	366.64	PASS	AC=1;AF=0.565;AN=2;DP=511;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:466,0,321:3,7,2,13
chr1	47155462	.	G	A	471	PASS	AC=1;AF=0.581;AN=2;DP=686;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:430,0,345:1,9,1,11
chr1	47181920	.	CAAAAA	CAAAA,CAA,CAAA,CAAAAAAAA,C	188.17	PASS	AC=0,0,1,0,0;AF=0.232,0.125,0.179,0.018,0.018;AN=2;DP=589;set=variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:15:94:5,1,8,1
chr1	47182206	.	C	T	274.61	PASS	AC=1;AF=0.565;AN=2;DP=1365;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:507,0,739:6,18,5,13
chr1	47184181	.	C	T	544.43	PASS	AC=1;AF=0.581;AN=2;DP=1336;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:753,0,1305:11,10,9,11
chr1	47184196	.	A	G	531.65	PASS	AC=1;AF=0.581;AN=2;DP=1388;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:738,0,1430:14,13,9,11
chr1	47184569	.	G	C	1192.99	PASS	AC=1;AF=0.565;AN=2;DP=2426;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,30:65:99:732,0,805:17,18,15,15
chr1	47276728	.	G	C	702.49	PASS	AC=1;AF=0.614;AN=2;DP=1263;MQ=60;set=variant-variant3-variant6-variant9-variant10-variant12-variant15-variant17-variant18-variant21-variant24-variant25-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,34:58:99:1010,0,622:11,13,14,20
chr1	47279789	.	C	T	1214.37	PASS	AC=1;AF=0.577;AN=2;DP=1137;MQ=60;set=variant-variant3-variant6-variant9-variant10-variant12-variant17-variant24-variant25-variant33-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,60:102:99:1607,0,1026:22,20,30,30
chr1	47279898	.	C	T	1233.1	PASS	AC=1;AF=0.5;AN=2;DP=114;FS=1.507;FractionInformativeReads=0.991;MQ=60;MQRankSum=-0.52;QD=10.82;ReadPosRankSum=-0.296;SOR=0.545;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,55:113:99:1261,0,1558:24,34,25,30
chr1	47280085	.	C	CCT	1968.81	PASS	AC=1;AF=0.571;AN=2;DP=928;MQ=60;set=variant-variant3-variant6-variant9-variant10-variant12-variant15-variant17-variant18-variant21-variant24-variant25-variant27-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,14:37:99:509,0,919:8,15,6,8
chr1	47280746	.	GAT	G	4887.31	PASS	AC=1;AF=0.55;AN=2;DP=1393;MQ=60;set=variant-variant3-variant9-variant10-variant17-variant24-variant33-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:89,69:158:99:2630,0,3741:47,42,35,34
chr1	47280859	.	G	A	3123.46	PASS	AC=1;AF=0.536;AN=2;DP=1857;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant9-variant10-variant17-variant24-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,56:129:99:1382,0,1864:34,39,25,31
chr1	47280884	.	C	T	2427.49	PASS	AC=1;AF=0.55;AN=2;DP=1195;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant9-variant10-variant17-variant24-variant33-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,56:109:99:1377,0,1483:21,32,24,32
chr1	47282772	.	C	T	2983.71	PASS	AC=1;AF=0.55;AN=2;DP=1615;MQ=60;set=variant-variant3-variant9-variant10-variant17-variant24-variant33-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:106,93:199:99:2353,0,2452:49,57,45,48
chr1	47282888	.	C	T	969.47	PASS	AC=1;AF=0.55;AN=2;DP=572;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant9-variant10-variant17-variant24-variant33-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,35:57:99:983,0,630:5,17,8,27
chr1	47285150	.	G	A	719.27	PASS	AC=1;AF=0.55;AN=2;DP=290;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant9-variant10-variant17-variant24-variant33-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,5:28:99:141,0,701:6,17,0,5
chr1	47348573	.	C	G	151.77	PASS	AC=1;AF=0.778;AN=2;DP=35;FS=0;FractionInformativeReads=1;set=filterInvariant-filterInvariant3-filterInvariant9-filterInvariant11-filterInvariant25-filterInvariant39-variant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:69:69,0,237:3,0,2,0
chr1	47348578	.	T	C	151.77	PASS	AC=1;AF=0.786;AN=2;DP=28;FS=0;FractionInformativeReads=1;set=filterInvariant-filterInvariant3-filterInvariant9-filterInvariant39-variant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,237:5,0,2,0
chr1	47351052	.	A	T	209.47	PASS	AC=1;AF=0.852;AN=2;DP=268;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant16-variant18-variant19-variant20-variant21-variant22-filterInvariant26-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:162,0,233:6,2,5,2
chr1	47395973	.	G	A	2211.59	PASS	AC=2;AF=0.798;AN=2;DP=3073;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2805,257,0:0,0,25,61
chr1	47398743	.	G	C	4057.04	PASS	AC=2;AF=0.798;AN=2;DP=5698;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3404,332,0:0,0,52,59
chr1	47399810	.	A	G	1631.62	PASS	AC=1;AF=0.5;AN=2;DP=338;set=variant10-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,81:147:99:1943,0,1510:34,32,43,38
chr1	47400059	.	A	G	1652.67	PASS	AC=2;AF=1;AN=2;DP=3182;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1990,188,0:0,0,39,24
chr1	47400270	.	G	A	573.64	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=38.84;MQRankSum=0.836;QD=20.49;ReadPosRankSum=-1.181;SOR=0.638;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,19:28:99:602,0,238:1,8,3,16
chr1	47401424	.	A	T	2219.21	PASS	AC=2;AF=0.798;AN=2;DP=4350;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3412,353,0:0,0,46,71
chr1	47401466	.	T	C	1742.99	PASS	AC=2;AF=0.798;AN=2;DP=2931;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,79:80:99:2712,208,0:1,0,16,63
chr1	47402487	.	TTGTGTG	TTGTG,TTG,T	3457.34	PASS	AC=0,1,1;AF=0.128,0.663,0.116;AN=2;DP=6990;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/2:133:99:0,0,54,79
chr1	47407002	.	A	G	1806.65	PASS	AC=1;AF=0.5;AN=2;DP=139;FS=1.36;FractionInformativeReads=0.993;MQ=59.45;MQRankSum=-2.646;QD=13;ReadPosRankSum=3.463;SOR=0.862;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,71:138:99:1835,0,1898:30,37,29,42
chr1	47550180	.	T	G	233.9	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=2.251;FractionInformativeReads=1;MQ=60;MQRankSum=0.272;QD=12.99;ReadPosRankSum=0.906;SOR=0.19;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:262,0,194:6,1,7,4
chr1	47571943	.	CTTT	C,CTT,CTTTT,CTTTTT	1895.97	PASS	AC=0,1,0,0;AF=0.369,0.155,0.06,0.012;AN=2;DP=2950;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:52:99:12,21,6,13
chr1	47582246	.	C	T	748.4	PASS	AC=1;AF=0.5;AN=2;DP=757;set=variant-variant3-variant9-variant13-variant14-variant21-variant23-variant24-variant26-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,21:49:99:425,0,718:16,12,10,11
chr1	47607851	.	A	T	4923.21	PASS	AC=1;AF=0.656;AN=2;DP=7259;set=variant-variant2-variant3-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,134:236:99:3712,0,2718:32,70,43,91
chr1	47609407	.	C	T	2440.66	PASS	AC=1;AF=0.577;AN=2;DP=2760;set=variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant25-variant27-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:91,104:195:99:2594,0,2172:51,40,63,41
chr1	47652870	.	CCTTG	C	1054.24	PASS	AC=1;AF=0.733;AN=2;DP=2110;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:924,0,3925:21,5,21,3
chr1	47652875	.	AGC	A	1091.89	PASS	AC=1;AF=0.733;AN=2;DP=2183;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,24:52:99:945,0,3922:23,5,21,3
chr1	47652879	.	T	A	1101.09	PASS	AC=1;AF=0.733;AN=2;DP=2281;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:945,0,3922:23,5,21,4
chr1	47655599	.	C	T	1075.94	PASS	AC=1;AF=0.5;AN=2;DP=901;MQ=60;set=variant10-variant18-variant22-variant25-variant26-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,53:125:99:1251,0,2051:42,30,31,22
chr1	47655816	.	A	G	901.09	PASS	AC=2;AF=0.826;AN=2;DP=1751;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1834,141,0:0,0,9,38
chr1	47656575	.	G	A	514.46	PASS	AC=1;AF=0.695;AN=2;DP=2439;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,38:66:99:981,0,613:16,12,19,19
chr1	47682017	.	T	G	245.55	PASS	AC=1;AF=0.724;AN=2;DP=960;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:379,0,257:6,4,7,8
chr1	47683528	.	C	T	590.43	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=6.884;FractionInformativeReads=1;MQ=60;MQRankSum=1.254;QD=15.14;ReadPosRankSum=-1.733;SOR=1.052;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:619,0,445:7,11,13,8
chr1	47684677	.	T	G	570.42	PASS	AC=1;AF=0.711;AN=2;DP=2705;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,35:67:99:1042,0,758:16,16,17,18
chr1	47685455	.	T	C	3917.62	PASS	AC=2;AF=1;AN=2;DP=6400;FS=0;MQ=60;MQRankSum=1.31;ReadPosRankSum=1.711;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3472,360,0:0,0,47,73
chr1	47689842	.	C	G	110.91	PASS	AC=1;AF=0.716;AN=2;DP=889;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:245,0,185:1,5,3,7
chr1	47691568	.	GCAGA	G	1709.59	PASS	AC=1;AF=0.667;AN=2;DP=5134;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,46:117:99:1710,0,3694:29,42,19,27
chr1	47695215	.	T	C	74.45	PASS	AC=1;AF=0.5;AN=2;DP=549;MQ=60;set=filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant9-filterInvariant25-variant27-filterInvariant31-variant36-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:45,13:58:99:127,0,1865:14,31,13,0
chr1	47695225	.	A	C	196.24	PASS	AC=1;AF=0.5;AN=2;DP=1342;set=filterInvariant3-variant4-variant5-filterInvariant7-filterInvariant9-filterInvariant16-variant17-filterInvariant21-variant23-filterInvariant24-filterInvariant25-filterInvariant27-variant31-variant32-variant34-filterInvariant35-variant36-filterInvariant37-filterInvariant39-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:41,17:58:99:243,0,895:10,31,17,0
chr1	47697420	.	C	T	922.83	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.489;QD=13.37;ReadPosRankSum=0.043;SOR=0.724;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,40:69:99:951,0,761:14,15,19,21
chr1	47716040	.	TAA	T	2129.64	PASS	AC=1;AF=0.667;AN=2;DP=4500;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,64:124:99:2506,0,2273:37,23,41,23
chr1	47716231	.	C	T	1505.76	PASS	AC=1;AF=0.5;AN=2;DP=111;FS=3.688;FractionInformativeReads=1;MQ=60;MQRankSum=-0.434;QD=13.57;ReadPosRankSum=0.581;SOR=1.108;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,55:111:99:1534,0,1294:22,34,17,38
chr1	47716492	.	A	G	1200.64	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.38;QD=13.34;ReadPosRankSum=-2.324;SOR=0.741;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,52:90:99:1229,0,960:23,15,32,20
chr1	47717189	.	A	G	2056.13	PASS	AC=1;AF=0.667;AN=2;DP=4726;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,62:117:99:1569,0,1530:28,27,33,29
chr1	47735280	.	T	C	482.78	PASS	AC=1;AF=0.667;AN=2;DP=1179;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:396,0,252:8,1,10,4
chr1	47746678	.	G	C	1317.1	PASS	AC=1;AF=0.5;AN=2;DP=771;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant10-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,47:107:99:1074,0,1462:29,31,25,22
chr1	47753405	.	G	A	606.04	PASS	AC=1;AF=0.625;AN=2;DP=1467;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:560,0,618:10,14,7,15
chr1	47753424	.	T	A	511.23	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.894;QD=14.2;ReadPosRankSum=0.08;SOR=0.612;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:539,0,351:6,10,8,12
chr1	47765490	.	T	C	79.49	PASS	AC=1;AF=0.621;AN=2;DP=397;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:195,0,148:4,1,4,1
chr1	47767141	.	C	A	345.54	PASS	AC=1;AF=0.621;AN=2;DP=520;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:370,0,340:8,2,10,1
chr1	47767914	.	G	A	1294.02	PASS	AC=1;AF=0.625;AN=2;DP=3589;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,63:118:99:1407,0,1362:36,19,34,29
chr1	47770441	.	A	C	43.71	PASS	AC=1;AF=0.629;AN=2;DP=313;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:134,0,107:3,0,4,0
chr1	47770786	.	T	A	851.96	PASS	AC=1;AF=0.625;AN=2;DP=2132;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:464,0,609:7,16,6,13
chr1	47778520	.	T	C	2625.86	PASS	AC=1;AF=0.625;AN=2;DP=4198;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,68:119:99:1885,0,1490:39,12,47,21
chr1	47779693	.	C	T	1456.13	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=3.578;FractionInformativeReads=1;MQ=60;MQRankSum=-0.798;QD=13.48;ReadPosRankSum=1.439;SOR=1.075;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,58:108:99:1484,0,1208:26,24,35,23
chr1	47779936	.	A	T	108.4	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.551;QD=7.23;ReadPosRankSum=1.041;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:137,0,268:3,7,1,4
chr1	47799639	.	G	C	271.11	PASS	AC=1;AF=0.606;AN=2;DP=1168;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:507,0,365:10,7,10,11
chr1	47824248	.	C	T	4295.11	PASS	AC=2;AF=1;AN=2;DP=5431;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3542,318,0:0,0,63,43
chr1	47824400	.	C	T	9343.73	PASS	AC=2;AF=1;AN=2;DP=10479;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,218:218:99:6864,653,0:0,0,110,108
chr1	47833918	.	G	A	211.63	PASS	AC=2;AF=0.6;AN=2;DP=66;FS=0;FractionInformativeReads=1;MQ=60;set=variant9-variant13-variant20-variant22-variant24-variant27-variant28-variant30-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:69,6,0:0,0,2,0
chr1	47834013	.	A	G	241.93	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=2.757;FractionInformativeReads=1;MQ=60;MQRankSum=1.62;QD=18.61;ReadPosRankSum=-2.237;SOR=2.093;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:270,0,102:2,2,7,2
chr1	47840592	.	A	G	840.59	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=3.257;FractionInformativeReads=1;MQ=60;MQRankSum=-1.279;QD=12.18;ReadPosRankSum=-0.523;SOR=0.39;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,33:69:99:869,0,856:22,14,17,16
chr1	47841038	.	G	GA	461.07	PASS	AC=1;AF=0.625;AN=2;DP=1452;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,10:36:99:196,0,686:8,18,2,8
chr1	47841109	.	T	C	241.77	PASS	AC=2;AF=0.989;AN=2;DP=465;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:443,33,0:0,0,1,10
chr1	47842431	.	G	A	7070.87	PASS	AC=2;AF=1;AN=2;DP=10429;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,220:221:99:7169,653,0:1,0,140,80
chr1	47842666	.	A	T	10404	PASS	AC=2;AF=1;AN=2;DP=13088;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,292:292:99:8789,875,0:0,0,121,171
chr1	47842777	.	C	T	3144.95	PASS	AC=1;AF=0.622;AN=2;DP=5854;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:61,70:131:99:1912,0,1823:24,37,30,40
chr1	47844464	.	G	A	2356.35	PASS	AC=1;AF=0.622;AN=2;DP=5968;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:79,51:130:99:1358,0,2230:28,51,17,34
chr1	47882003	.	G	A	215.74	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.341;QD=8.63;ReadPosRankSum=1.67;SOR=0.936;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:244,0,326:6,8,4,7
chr1	47883019	.	T	C	215.84	PASS	AC=2;AF=0.909;AN=2;DP=2112;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2087,147,0:0,0,24,25
chr1	47883024	.	A	G	899.13	PASS	AC=2;AF=1;AN=2;DP=2158;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:2121,147,0:0,0,23,25
chr1	47883414	.	G	C	918.95	PASS	AC=1;AF=0.5;AN=2;DP=350;MQ=60;set=variant13-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,49:105:99:1154,0,1581:24,32,22,27
chr1	47901687	.	T	A	112.67	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=1.987;FractionInformativeReads=1;MQ=60;MQRankSum=-1.247;QD=7.04;ReadPosRankSum=-0.922;SOR=1.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:141,0,241:5,5,4,2
chr1	47902286	.	G	A	1715.81	PASS	AC=2;AF=0.657;AN=2;DP=5907;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:5170,503,0:0,0,81,87
chr1	47903063	.	G	C	2634.41	PASS	AC=1;AF=0.643;AN=2;DP=7941;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,118:227:99:2668,0,2490:53,56,56,62
chr1	47904668	.	T	TCCGCAC	2466.02	PASS	AC=2;AF=1;AN=2;DP=2901;FS=0;MQ=60;MQRankSum=0.137;ReadPosRankSum=1.745;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1760,122,0:0,0,21,16
chr1	47904909	.	G	C	3349.55	PASS	AC=2;AF=1;AN=2;DP=3030;FS=0;MQ=60;MQRankSum=0.628;ReadPosRankSum=-0.075;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2276,180,0:0,0,38,22
chr1	47905555	.	AG	A	296.26	PASS	AC=2;AF=0.743;AN=2;DP=1498;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1178,111,0:0,0,10,27
chr1	47906338	.	G	A	484.8	PASS	AC=2;AF=1;AN=2;DP=1193;FS=0;MQ=60;MQRankSum=0.528;ReadPosRankSum=1.281;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,22:23:59:693,59,0:0,1,8,14
chr1	47906425	.	G	A	61.77	PASS	AC=2;AF=0.989;AN=2;DP=355;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.751;ReadPosRankSum=0.751;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:211,18,0:0,0,1,5
chr1	48244322	.	C	T	665.78	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.272;QD=9;ReadPosRankSum=1.371;SOR=0.633;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,30:74:99:694,0,1066:17,27,12,18
chr1	48260116	.	C	T	321.5	PASS	AC=1;AF=0.625;AN=2;DP=630;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant10-variant16-variant17-variant18-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,5:21:99:114,0,490:13,3,3,2
chr1	48260462	.	GTT	G,GT,GTTT,GTTTT	33.79	PASS	AC=1,0,0,0;AF=0.1,0.3,0.067,0.033;AN=2;DP=404;set=filterInvariant4-variant6-variant8-variant10-variant11-filterInvariant12-filterInvariant24-variant27-filterInvariant33-variant34-filterInvariant37-filterInvariant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:14:84:1,8,1,4
chr1	48695081	.	G	A	2236.42	PASS	AC=1;AF=0.6;AN=2;DP=1720;MQ=60;set=variant7-variant13-variant14-variant16-variant18-variant22-variant23-variant24-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,68:150:99:1668,0,2126:40,42,40,28
chr1	48697733	.	T	G	1912.91	PASS	AC=2;AF=1;AN=2;DP=5274;FS=0;MQ=60;MQRankSum=0.822;ReadPosRankSum=0.164;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4203,410,0:0,0,60,77
chr1	48697928	.	T	C	432.38	PASS	AC=1;AF=0.604;AN=2;DP=253;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant9-variant10-variant11-variant12-variant14-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:192,0,229:4,2,3,2
chr1	48707838	.	A	G	2326.55	PASS	AC=2;AF=0.955;AN=2;DP=2413;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2732,233,0:0,0,23,55
chr1	48708228	.	G	T	1212.68	PASS	AC=1;AF=0.6;AN=2;DP=1007;MQ=60;set=variant7-variant13-variant14-variant16-variant18-variant22-variant23-variant24-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,53:103:99:1408,0,1257:18,32,22,31
chr1	48713394	.	C	T	1634.16	PASS	AC=1;AF=0.845;AN=2;DP=2723;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,37:57:99:979,0,567:9,11,14,23
chr1	48761154	.	T	A	550.49	PASS	AC=1;AF=0.569;AN=2;DP=1547;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:481,0,649:11,14,7,13
chr1	48762675	.	TCACAATGAG	T	2752.55	PASS	AC=1;AF=0.559;AN=2;DP=3703;MQ=60;set=variant2-variant8-variant10-variant11-variant12-variant19-variant25-variant27-variant28-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,92:212:99:3495,0,11930:56,64,44,48
chr1	48762797	.	GGTGTGTGT	GGTGTGT,GGTGT,GGTGTGTGTGT,GGT,GGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGTGT,G,GGTGTGTGTGTGTGTGTGTGT,GGTGTGTGTGTGT	343.1	PASS	AC=1,0,1,0,0,0,0,0,0,0;AF=0.398,0.102,0.023,0.08,0.068,0.023,0.023,0.011,0.011,0.011;AN=2;DP=5936;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:106:99:7,3,57,39
chr1	48764668	.	C	A	152.35	PASS	AC=1;AF=0.5;AN=2;DP=52;FractionInformativeReads=1;MQ=60;set=variant25-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,12:16:99:485,0,115:0,4,1,11
chr1	48902977	.	G	C	835.33	PASS	AC=1;AF=0.977;AN=2;DP=697;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:27,8:35:99:214,0,654:12,15,4,4
chr1	48937946	.	A	G	599.07	PASS	AC=1;AF=0.529;AN=2;DP=389;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant10-variant11-variant12-variant19-variant25-variant27-variant28-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:262,0,174:5,3,3,6
chr1	48998707	.	CT	C,CCCAAT	277.16	PASS	AC=0,2;AF=0.192,0.538;AN=2;DP=83;FS=0;MQ=60;set=variant2-variant5-variant6-variant9-variant11-variant12-variant14-variant19-variant34-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	2/2:2:6:0,0,1,1
chr1	48998708	.	T	C,A	182.97	PASS	AC=0,2;AF=0.744,0.218;AN=2;DP=240;FS=0;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:2:6:0,0,1,1
chr1	48998748	.	T	G	469.22	PASS	AC=1;AF=0.63;AN=2;DP=238;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant27-variant29-variant31-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:115,0,114:3,0,2,2
chr1	48999555	.	T	C	2775.64	PASS	AC=1;AF=0.587;AN=2;DP=5420;MQ=60;set=variant2-variant5-variant7-variant9-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant27-variant29-variant30-variant31-variant33-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,108:218:99:2786,0,2767:45,65,42,66
chr1	49049675	.	C	T	348.81	PASS	AC=1;AF=0.591;AN=2;DP=709;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant9-variant10-variant18-variant19-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:716,0,799:16,15,16,15
chr1	49050925	.	A	G	302.66	PASS	AC=1;AF=0.583;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,17:50:99:431,0,911:20,13,10,7
chr1	49051568	.	T	C	1775.06	PASS	AC=1;AF=0.731;AN=2;DP=2375;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:654,0,744:12,16,13,13
chr1	49052423	.	T	C	529.64	PASS	AC=1;AF=0.65;AN=2;DP=607;set=variant2-variant5-variant7-variant8-variant10-variant18-variant19-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,32:62:99:795,0,685:15,15,17,15
chr1	49100332	.	C	T	1887.17	PASS	AC=1;AF=0.697;AN=2;DP=2225;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:889,0,596:8,16,12,18
chr1	49113319	.	T	C	2886.11	PASS	AC=1;AF=0.737;AN=2;DP=3563;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,42:86:99:982,0,997:23,21,17,25
chr1	49128720	.	C	T	1058.45	PASS	AC=1;AF=0.721;AN=2;DP=1473;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:478,0,576:15,0,12,7
chr1	49193394	.	G	T	2981.62	PASS	AC=2;AF=0.893;AN=2;DP=4911;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2406,234,0:0,0,49,29
chr1	49224584	.	G	T	1218.4	PASS	AC=1;AF=0.898;AN=2;DP=3088;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,30:61:99:712,0,820:17,14,12,18
chr1	49242748	.	G	A	89.64	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=0;FractionInformativeReads=1;set=variant2-variant5-variant8-variant23-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:79:102,0,79:2,2,2,3
chr1	49283412	.	C	T	1120.6	PASS	AC=2;AF=0.989;AN=2;DP=1807;MQ=60;MQRankSum=-1.397;ReadPosRankSum=1.678;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1144,110,0:0,0,20,17
chr1	50331725	.	T	C	414.3	PASS	AC=1;AF=0.953;AN=2;DP=942;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:268,0,372:3,8,5,7
chr1	50331749	.	AC	A	219.04	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.722;QD=12.88;ReadPosRankSum=-1.973;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:256,0,354:2,7,1,7
chr1	50569735	.	T	C	2337.93	PASS	AC=1;AF=0.5;AN=2;DP=345;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,87:156:99:2254,0,1794:33,36,36,51
chr1	50575675	.	CTG	C,CTGTG	106.19	PASS	AC=0,1;AF=0.441,0.059;AN=2;DP=1207;set=filterInvariant-filterInvariant6-variant7-filterInvariant10-filterInvariant11-filterInvariant14-variant17-filterInvariant19-filterInvariant23-filterInvariant25-variant26-filterInvariant31-filterInvariant34-filterInvariant37-variant39-variant41-variant44	GT:DP:GQ:SB	0/2:48:99:10,23,3,12
chr1	50661138	.	C	T	588.49	PASS	AC=1;AF=0.5;AN=2;DP=184;FS=0;FractionInformativeReads=1;MQ=60;set=variant12-variant24-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:616,0,747:17,14,16,12
chr1	50661411	.	C	T	2159.04	PASS	AC=1;AF=0.943;AN=2;DP=5411;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:58,49:107:99:1057,0,1572:24,34,23,26
chr1	50666906	.	C	T	1744.39	PASS	AC=1;AF=0.5;AN=2;DP=622;FractionInformativeReads=1;set=variant12-variant24-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,85:143:99:2281,0,1442:34,24,55,30
chr1	50667062	.	GA	G	2116.13	PASS	AC=1;AF=0.5;AN=2;DP=1008;MQ=60;set=variant12-variant24-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:113,90:203:99:1599,0,2358:60,53,41,49
chr1	50668958	.	T	C	3107.88	PASS	AC=1;AF=0.5;AN=2;DP=789;MQ=60;set=variant6-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:127,132:259:99:3290,0,3279:59,68,63,69
chr1	50669370	.	T	C	2410.44	PASS	AC=1;AF=0.5;AN=2;DP=564;MQ=60;set=variant6-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:110,97:207:99:2594,0,2893:39,71,31,66
chr1	50884230	.	G	C	1153.19	PASS	AC=2;AF=0.907;AN=2;DP=1920;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1455,126,0:0,0,18,24
chr1	50884778	.	G	A	2754.64	PASS	AC=2;AF=0.825;AN=2;DP=3524;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,59:62:49:1559,49,0:2,1,29,30
chr1	50906028	.	C	G	3123.09	PASS	AC=1;AF=0.5;AN=2;DP=242;FS=1.574;FractionInformativeReads=1;MQ=60;MQRankSum=-1.997;QD=12.91;ReadPosRankSum=3.301;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:115,127:242:99:3151,0,2863:45,70,53,74
chr1	50956163	.	AAAGG	A	337.34	PASS	AC=1;AF=0.661;AN=2;DP=819;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:537,0,630:14,3,12,2
chr1	50956212	.	C	CAAATACAGTGG	2796.52	PASS	AC=2;AF=1;AN=2;DP=2438;FS=0;MQ=60;MQRankSum=1.13;ReadPosRankSum=1.506;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:3501,234,0:0,0,47,26
chr1	50957509	.	A	T	1005.29	PASS	AC=2;AF=0.884;AN=2;DP=1225;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1079,90,0:0,0,8,22
chr1	51425293	.	CCA	C	85.48	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=491;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:53,9:62:99:136,0,1773:42,11,6,3
chr1	51433821	.	G	GC	4003.05	PASS	AC=2;AF=1;AN=2;DP=5111;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:4400,373,0:0,0,52,72
chr1	51433863	.	G	GC	2555.53	PASS	AC=2;AF=1;AN=2;DP=3260;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2845,241,0:0,0,29,51
chr1	51433888	.	A	AG	2310.98	PASS	AC=2;AF=1;AN=2;DP=2875;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2784,226,0:0,0,30,43
chr1	51568124	.	A	G	1926.45	PASS	AC=1;AF=0.5;AN=2;DP=956;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant16-variant17-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:79,72:151:99:1901,0,2021:29,50,24,48
chr1	51701956	.	C	A	483.64	PASS	AC=1;AF=0.5;AN=2;DP=78;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:512,0,506:10,10,13,8
chr1	51766490	.	G	A	1744.35	PASS	AC=1;AF=0.5;AN=2;DP=807;FractionInformativeReads=1;MQ=60;set=variant15-variant24-variant28-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,74:148:99:1941,0,2149:25,49,29,45
chr1	51796218	.	C	A	359.23	PASS	AC=1;AF=0.5;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant15-variant24-variant28-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:269,0,480:11,10,7,6
chr1	51822130	.	A	C	539.9	PASS	AC=1;AF=0.5;AN=2;DP=65;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:568,0,594:12,7,11,5
chr1	51871568	.	T	TA	1614.74	PASS	AC=1;AF=0.5;AN=2;DP=208;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,54:116:99:1652,0,1973:35,27,34,20
chr1	51873951	.	G	A	2727.23	PASS	AC=1;AF=0.789;AN=2;DP=3063;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,40:71:99:952,0,827:12,19,15,25
chr1	52248017	.	A	G	49.51	PASS	AC=1;AF=0.536;AN=2;DP=105;MQ=60;set=variant5-variant10-variant13-variant14-variant17-variant19-variant23-variant32-variant33-variant35-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:308,0,186:5,0,8,0
chr1	52253793	.	C	T	3160.79	PASS	AC=1;AF=0.531;AN=2;DP=3122;MQ=60;set=variant3-variant5-variant6-variant10-variant13-variant14-variant17-variant19-variant23-variant32-variant33-variant35-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:100,102:202:99:2270,0,2464:43,57,44,58
chr1	52253827	.	T	TAC	2772.78	PASS	AC=1;AF=0.556;AN=2;DP=1061;MQ=60;set=variant8-variant14-variant17-variant20-variant24-variant26-variant32-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,49:98:99:1040,0,1464:17,32,18,31
chr1	52253864	.	G	A	1595.63	PASS	AC=1;AF=0.531;AN=2;DP=1076;set=variant3-variant5-variant6-variant10-variant13-variant14-variant17-variant19-variant23-variant32-variant33-variant35-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,38:75:99:1043,0,1058:9,28,13,25
chr1	52264064	.	A	G	1084.39	PASS	AC=1;AF=0.632;AN=2;DP=1536;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant23-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,44:98:99:932,0,1295:25,29,20,24
chr1	52266242	.	G	A	1741.68	PASS	AC=1;AF=0.679;AN=2;DP=4629;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,95:148:99:2384,0,1260:19,34,42,53
chr1	52279650	.	T	G	1391.65	PASS	AC=2;AF=0.75;AN=2;DP=3859;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2719,276,0:0,0,46,46
chr1	52289220	.	TGTATTAAGGTCAA	T	584.75	PASS	AC=1;AF=0.655;AN=2;DP=948;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:589,0,2540:17,2,14,2
chr1	52290984	.	T	G	426.6	PASS	AC=1;AF=0.679;AN=2;DP=1103;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:304,0,341:6,6,6,5
chr1	52293570	.	G	A	643.62	PASS	AC=1;AF=0.691;AN=2;DP=1578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:484,0,615:8,16,7,13
chr1	52293638	.	G	A	324.76	PASS	AC=2;AF=1;AN=2;DP=540;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:597,51,0:0,0,3,14
chr1	52306063	.	ATCT	A	848.96	PASS	AC=1;AF=0.672;AN=2;DP=1549;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,27:42:99:1049,0,581:7,8,10,17
chr1	52344414	.	A	C	534	PASS	AC=1;AF=0.679;AN=2;DP=1946;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,30:77:99:734,0,1091:21,26,10,20
chr1	52374952	.	A	C	2628.45	PASS	AC=2;AF=0.735;AN=2;DP=6404;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,207:208:99:6609,614,0:0,1,130,77
chr1	52375424	.	T	C	1481.3	PASS	AC=2;AF=0.763;AN=2;DP=4926;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:3899,392,0:0,0,67,64
chr1	52375564	.	T	C	1107.37	PASS	AC=1;AF=0.5;AN=2;DP=581;MQ=60;set=variant7-variant15-variant17-variant24-variant28-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,26:64:99:748,0,968:18,20,11,15
chr1	52375612	.	T	G	745.46	PASS	AC=2;AF=0.798;AN=2;DP=2266;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2093,185,0:0,0,27,35
chr1	52375872	.	T	C	445.5	PASS	AC=2;AF=0.763;AN=2;DP=1572;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2120,174,0:0,0,28,30
chr1	52375881	.	G	T	636.55	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.984;QD=10.98;ReadPosRankSum=1.159;SOR=0.576;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,28:58:99:665,0,758:14,16,14,14
chr1	52377787	.	T	C	271.06	PASS	AC=2;AF=0.861;AN=2;DP=107;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant5-variant7-variant10-variant16-variant19-variant21-variant22-variant24-variant27-variant28-variant29-variant33-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:133,12,0:0,0,2,2
chr1	52378274	.	A	T	46.69	PASS	AC=2;AF=1;AN=2;DP=94;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:73,6,0:0,0,2,0
chr1	52379149	.	C	T	452.7	PASS	AC=2;AF=0.726;AN=2;DP=1404;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1094,99,0:0,0,7,26
chr1	52381363	.	GTTT	G	1997.31	PASS	AC=2;AF=0.729;AN=2;DP=3876;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3789,265,0:0,0,28,60
chr1	52381552	.	G	A	373.85	PASS	AC=2;AF=0.75;AN=2;DP=443;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:480,36,0:0,0,9,3
chr1	52383083	.	G	A	72.22	PASS	AC=2;AF=0.798;AN=2;DP=812;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:74:595,74,0:0,0,11,14
chr1	52383255	.	T	C	96.2	PASS	AC=2;AF=0.848;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:247,30,0:0,0,5,5
chr1	52384643	.	CTTTTTTTTTTTTT	C,CTTTTTTTTTTTT,CTTTTTTTTTT,CTTTTTTTTTTT,CTTTTTTTTT	937.68	PASS	AC=2,0,0,0,0;AF=0.571,0.095,0.012,0.036,0.012;AN=2;DP=2150;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:31:99:0,0,2,29
chr1	52402856	.	T	G	1465.15	PASS	AC=2;AF=0.932;AN=2;DP=1997;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1719,150,0:0,0,32,18
chr1	52402956	.	G	A	2926.21	PASS	AC=2;AF=0.932;AN=2;DP=4858;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3678,340,0:0,0,66,48
chr1	52489267	.	CAG	C	2758.99	PASS	AC=1;AF=0.5;AN=2;DP=758;MQ=60;set=variant4-variant8-variant20-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,62:142:99:2339,0,3168:33,47,25,37
chr1	52489321	.	C	A	958.4	PASS	AC=1;AF=0.5;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant20-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,34:77:99:1036,0,1279:9,34,11,23
chr1	52489322	.	G	A	3191.24	PASS	AC=2;AF=1;AN=2;DP=3943;FS=0;MQ=60;MQRankSum=-1.102;ReadPosRankSum=0.824;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:3037,232,0:0,0,20,57
chr1	52490129	.	ATT	A	2386.98	PASS	AC=1;AF=0.5;AN=2;DP=137;FS=0.652;FractionInformativeReads=0.993;MQ=60;MQRankSum=-0.986;QD=17.42;ReadPosRankSum=0.493;SOR=0.581;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,63:136:99:2424,0,2982:45,28,37,26
chr1	52490418	.	C	T	1241.39	PASS	AC=1;AF=0.886;AN=2;DP=1233;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:383,0,574:3,14,5,7
chr1	52494417	.	A	T	165.19	PASS	AC=1;AF=0.5;AN=2;DP=48;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:181,0,156:0,4,0,5
chr1	52498112	.	C	A	757.16	PASS	AC=1;AF=0.5;AN=2;DP=329;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant20-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,32:70:99:876,0,1144:16,22,10,22
chr1	52498137	.	T	TG	834.46	PASS	AC=1;AF=0.5;AN=2;DP=313;MQ=60;set=variant4-variant8-variant20-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:982,0,1178:18,19,8,23
chr1	52498370	.	C	T	766.49	PASS	AC=1;AF=0.5;AN=2;DP=697;MQ=60;set=variant2-variant4-variant8-variant9-variant11-variant20-variant24-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,25:60:99:651,0,948:17,18,15,10
chr1	52498861	.	A	T	1579.93	PASS	AC=1;AF=0.5;AN=2;DP=623;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant20-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,52:122:99:1281,0,1672:40,30,25,27
chr1	52499489	.	G	A	2871.79	PASS	AC=1;AF=0.5;AN=2;DP=1302;MQ=60;set=variant4-variant8-variant20-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:134,122:256:99:2868,0,3267:64,70,58,64
chr1	52507070	.	T	A	403.37	PASS	AC=1;AF=0.5;AN=2;DP=631;MQ=60;set=variant2-variant4-variant8-variant9-variant11-variant12-variant13-variant20-variant24-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,29:47:99:856,0,566:14,4,22,7
chr1	52517412	.	A	G	3673.1	PASS	AC=1;AF=0.886;AN=2;DP=6232;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:74,59:133:99:1362,0,1804:40,34,29,30
chr1	52521062	.	A	T	2350.32	PASS	AC=2;AF=1;AN=2;DP=4471;FS=0;MQ=60;MQRankSum=-0.485;ReadPosRankSum=1.704;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3730,353,0:0,0,44,75
chr1	52521776	.	C	T	1164	PASS	AC=2;AF=1;AN=2;DP=3057;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2098,201,0:0,0,36,31
chr1	52521798	.	G	T	1275.48	PASS	AC=2;AF=1;AN=2;DP=3045;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2256,224,0:0,0,40,35
chr1	52526341	.	A	T	516.76	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.639;QD=19.88;ReadPosRankSum=1.028;SOR=0.491;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,18:26:99:545,0,242:2,6,6,12
chr1	52555388	.	C	T	8798.47	PASS	AC=1;AF=0.943;AN=2;DP=9418;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:103,108:211:99:2616,0,2587:54,49,55,53
chr1	52555593	.	C	G	11249.3	PASS	AC=1;AF=0.943;AN=2;DP=11056;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:117,112:229:99:2890,0,3141:60,57,56,56
chr1	52556425	.	CTT	CT,CTTT,CTTTT,C	190.29	PASS	AC=1,0,0,0;AF=0.367,0.067,0.033,0.033;AN=2;DP=792;set=variant2-filterInvariant9-variant16-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant26-filterInvariant27-filterInvariant28-variant30-variant32-variant37-filterInvariant41-filterInvariant42	GT:DP:GQ:SB	0/1:25:86:2,14,1,8
chr1	52608109	.	G	C	2279.93	PASS	AC=2;AF=0.966;AN=2;DP=2912;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1805,162,0:0,0,20,34
chr1	52698828	.	G	A	488.35	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=1.147;FractionInformativeReads=1;MQ=60;MQRankSum=0.991;QD=9.21;ReadPosRankSum=-1.1;SOR=0.938;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,21:53:99:517,0,815:21,11,15,6
chr1	52705285	.	A	G	1220.04	PASS	AC=1;AF=0.5;AN=2;DP=679;MQ=60;set=variant2-variant9-variant11-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,55:108:99:1385,0,1303:22,31,23,32
chr1	52705427	.	T	C	213.14	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant11-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:229,0,213:1,5,1,6
chr1	52729425	.	TC	TCCC,TTCCCCCC,TTCCCCCCCC,T,TTCCCCCCC,TCC	133.9	PASS	AC=0,0,0,0,0,1;AF=0.188,0.063,0.063,0.125,0.063,0.063;AN=2;DP=573;MQ=60;set=filterInvariant2-filterInvariant7-variant8-variant9-variant11-variant15-variant39-variant41	GT:DP:GQ:SB	0/6:31:99:0,19,0,12
chr1	52729429	.	C	G	311.92	PASS	AC=1;AF=0.5;AN=2;DP=79;MQ=60;set=variant9-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:421,0,610:3,18,0,17
chr1	52769557	.	G	A	1158.83	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=1.603;FractionInformativeReads=1;MQ=60;MQRankSum=-0.447;QD=11.47;ReadPosRankSum=-1.974;SOR=0.733;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,55:101:99:1187,0,984:22,24,29,26
chr1	52818188	.	G	A	452.56	PASS	AC=2;AF=0.724;AN=2;DP=767;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:667,69,0:0,0,10,13
chr1	52819888	.	A	G	617.18	PASS	AC=2;AF=1;AN=2;DP=707;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:641,57,0:0,0,14,5
chr1	52820226	.	G	A	3563.65	PASS	AC=2;AF=1;AN=2;DP=5972;FS=0;MQ=60;MQRankSum=0.554;ReadPosRankSum=-0.091;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4344,398,0:0,0,66,67
chr1	52820805	.	G	A	374.75	PASS	AC=1;AF=0.5;AN=2;DP=275;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant11-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,26:43:99:791,0,473:11,6,17,9
chr1	52822350	.	C	G	277.86	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=5.237;FractionInformativeReads=1;MQ=60;MQRankSum=0.705;QD=17.37;ReadPosRankSum=0.705;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:306,0,143:3,3,2,8
chr1	52823788	.	G	A	539.85	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=1.075;FractionInformativeReads=1;MQ=60;MQRankSum=0.06;QD=9.82;ReadPosRankSum=0.35;SOR=0.936;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,23:55:99:568,0,733:19,13,15,8
chr1	52830321	.	C	T	1124.23	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=6.116;FractionInformativeReads=1;MQ=60;MQRankSum=-1.448;QD=10.51;ReadPosRankSum=-2.805;SOR=0.76;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,45:107:99:1152,0,1512:35,27,20,25
chr1	52838622	.	G	A	1587.33	PASS	AC=1;AF=0.5;AN=2;DP=128;FS=0.666;FractionInformativeReads=1;MQ=60;MQRankSum=-1.463;QD=12.4;ReadPosRankSum=0.086;SOR=0.619;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:63,65:128:99:1616,0,1538:24,39,26,39
chr1	52847471	.	C	T	861.72	PASS	AC=1;AF=0.5;AN=2;DP=544;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant11-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,36:69:99:909,0,773:13,20,12,24
chr1	52850446	.	T	C	317.58	PASS	AC=1;AF=0.5;AN=2;DP=166;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant11-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:373,0,470:2,12,1,10
chr1	52850781	.	A	G	530.93	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.192;QD=15.62;ReadPosRankSum=-0.962;SOR=0.826;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:559,0,405:11,3,16,4
chr1	52851719	.	G	C	403.94	PASS	AC=1;AF=0.5;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant11-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:600,0,852:9,14,10,12
chr1	52851729	.	G	A	363.32	PASS	AC=1;AF=0.69;AN=2;DP=769;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant23-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:423,0,802:9,12,9,11
chr1	52854859	.	G	A	1179.05	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=4.198;FractionInformativeReads=0.989;MQ=60;MQRankSum=-0.32;QD=12.96;ReadPosRankSum=0.287;SOR=0.349;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,53:90:99:1207,0,925:25,12,30,23
chr1	52861899	.	T	G	1748.62	PASS	AC=1;AF=0.5;AN=2;DP=137;FS=1.377;FractionInformativeReads=1;MQ=60;MQRankSum=-0.2;QD=12.76;ReadPosRankSum=0.398;SOR=0.845;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,69:137:99:1777,0,1635:28,40,26,43
chr1	52876825	.	C	T	662.48	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=3.418;QD=10.86;ReadPosRankSum=-2.753;SOR=0.801;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,24:61:99:691,0,936:19,18,13,11
chr1	52878300	.	T	A	745.01	PASS	AC=1;AF=0.5;AN=2;DP=1068;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant9-variant11-variant17-variant20-variant23-variant31-variant33-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,59:114:99:1337,0,1269:27,28,32,27
chr1	52882406	.	A	G	1172.09	PASS	AC=1;AF=0.5;AN=2;DP=1543;MQ=60;set=variant-variant2-variant9-variant11-variant17-variant20-variant23-variant31-variant33-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,51:97:99:1420,0,1148:25,21,28,23
chr1	52882523	.	G	T	2144.7	PASS	AC=1;AF=0.5;AN=2;DP=192;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.873;QD=11.17;ReadPosRankSum=2.648;SOR=0.663;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,93:192:99:2173,0,2217:54,45,50,43
chr1	52882811	.	T	A	2197.28	PASS	AC=1;AF=0.5;AN=2;DP=162;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.203;QD=13.56;ReadPosRankSum=3.209;SOR=0.68;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:74,88:162:99:2226,0,1775:44,30,52,36
chr1	52883366	.	A	G	2176.96	PASS	AC=1;AF=0.5;AN=2;DP=171;FS=2.66;FractionInformativeReads=1;MQ=60;MQRankSum=-0.969;QD=12.73;ReadPosRankSum=0.032;SOR=0.607;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:89,82:171:99:2205,0,2293:48,41,40,42
chr1	52883420	.	T	TATCA	4232.36	PASS	AC=1;AF=0.5;AN=2;DP=212;FS=0.505;FractionInformativeReads=0.991;MQ=60;MQRankSum=0.926;QD=19.96;ReadPosRankSum=-3.187;SOR=0.769;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:102,108:210:99:4270,0,5178:51,51,56,52
chr1	52888937	.	T	A	747.69	PASS	AC=2;AF=1;AN=2;DP=1142;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:567,54,0:0,0,12,6
chr1	52912124	.	A	T	628.91	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.057;QD=10.14;ReadPosRankSum=-1.093;SOR=0.689;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,27:62:99:657,0,880:13,22,10,17
chr1	52959485	.	G	GT	33.31	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=0.5;MQ=60;MQRankSum=0.358;QD=3.33;ReadPosRankSum=0.358;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:42:71,0,42:0,2,0,3
chr1	52991569	.	T	C	884.25	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=4.389;FractionInformativeReads=1;MQ=60;MQRankSum=0.61;QD=11.34;ReadPosRankSum=-0.22;SOR=0.631;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:912,0,1145:24,17,17,20
chr1	53067914	.	T	G	36.65	PASS	AC=2;AF=0.694;AN=2;DP=502;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:277,27,0:0,0,6,3
chr1	53072454	.	T	C	884.59	PASS	AC=2;AF=0.884;AN=2;DP=5198;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4750,428,0:0,0,67,76
chr1	53074412	.	A	G	1374.14	PASS	AC=1;AF=0.5;AN=2;DP=502;MQ=60;set=variant2-variant9-variant11-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,38:70:99:1253,0,1028:20,12,32,6
chr1	53074532	.	C	A	3801.54	PASS	AC=1;AF=0.667;AN=2;DP=12420;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:186,161:347:99:4216,0,4784:112,74,104,57
chr1	53153044	.	T	C	2116.39	PASS	AC=2;AF=0.672;AN=2;DP=6581;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant17-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,228:228:99:7392,684,0:0,0,128,100
chr1	53153432	.	T	C	2716.49	PASS	AC=1;AF=0.625;AN=2;DP=6391;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant17-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,134:247:99:3445,0,2719:64,49,79,55
chr1	53153916	.	AT	A,ATT	48.8	PASS	AC=1,0;AF=0.48,0.02;AN=2;DP=965;MQ=60;set=variant-filterInvariant2-variant3-variant4-filterInvariant6-variant7-filterInvariant12-variant13-filterInvariant15-variant16-variant19-variant20-filterInvariant21-filterInvariant24-variant27-variant29-variant30-filterInvariant32-variant33-variant34-filterInvariant35-variant37-variant39-variant41-filterInvariant43	GT:DP:GQ:SB	0/1:24:99:2,13,2,7
chr1	53164220	.	C	T	106.77	PASS	AC=2;AF=0.703;AN=2;DP=274;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:439,36,0:0,0,2,10
chr1	53192029	.	T	TGGCGG,TGGGG,TG,TGG	243.94	PASS	AC=0,0,0,2;AF=0.2,0.1,0.1,0.4;AN=2;DP=47;FS=0;MQ=60;set=variant11-variant34-variant39-variant41-variant42	GT:DP:GQ:SB	4/4:7:21:0,0,7,0
chr1	53192187	.	C	T	2618.59	PASS	AC=2;AF=0.989;AN=2;DP=3504;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1636,167,0:0,0,27,29
chr1	53237526	.	G	A	496.5	PASS	AC=1;AF=0.603;AN=2;DP=544;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant24-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:285,0,513:1,13,1,7
chr1	53245472	.	A	T	627.14	PASS	AC=1;AF=0.603;AN=2;DP=2663;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant24-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:66,26:92:99:693,0,1852:41,25,22,4
chr1	53250650	.	G	A	1392.28	PASS	AC=1;AF=0.603;AN=2;DP=3435;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant24-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:61,75:136:99:1727,0,1397:32,29,36,39
chr1	53262456	.	G	A	434.61	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=1.172;FractionInformativeReads=0.98;MQ=60;MQRankSum=0.197;QD=8.52;ReadPosRankSum=1.042;SOR=0.437;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,21:50:99:463,0,767:9,20,8,13
chr1	53267477	.	T	G	408.22	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=3.111;FractionInformativeReads=1;MQ=60;MQRankSum=-1.183;QD=11.66;ReadPosRankSum=1.483;SOR=1.325;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:436,0,523:12,8,11,4
chr1	53267962	.	A	G	392.53	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=7.52;FractionInformativeReads=1;MQ=60;MQRankSum=-1.357;QD=16.36;ReadPosRankSum=-0.029;SOR=2.494;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:421,0,295:4,8,1,11
chr1	53271225	.	T	C	573.28	PASS	AC=1;AF=0.611;AN=2;DP=1058;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant24-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:534,0,352:6,9,8,12
chr1	53279378	.	C	T	1447	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.938;QD=10.72;ReadPosRankSum=-1.102;SOR=0.73;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,62:135:99:1475,0,1775:36,37,30,32
chr1	53282255	.	T	C	923.29	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0.887;FractionInformativeReads=1;MQ=60;MQRankSum=-1.01;QD=13.19;ReadPosRankSum=-0.388;SOR=0.809;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,35:70:99:952,0,776:19,16,20,15
chr1	53287710	.	C	T	2950.16	PASS	AC=1;AF=0.5;AN=2;DP=208;FS=1.111;FractionInformativeReads=1;MQ=60;MQRankSum=-2.139;QD=14.18;ReadPosRankSum=5.534;SOR=0.604;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:95,113:208:99:2978,0,2401:34,61,43,70
chr1	53288032	.	C	T	1540.91	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.084;QD=14.96;ReadPosRankSum=-1.332;SOR=0.678;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,61:103:99:1569,0,1125:25,17,36,25
chr1	53289063	.	A	G	1341.05	PASS	AC=1;AF=0.5;AN=2;DP=96;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.946;QD=13.97;ReadPosRankSum=-0.1;SOR=0.686;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,54:96:99:1369,0,999:25,17,32,22
chr1	53289190	.	GTT	GTTT,GT,G	211.93	PASS	AC=0,0,1;AF=0.304,0.174,0.022;AN=2;DP=2693;set=filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant9-filterInvariant12-filterInvariant14-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant24-filterInvariant25-variant28-filterInvariant33-filterInvariant35-filterInvariant36-variant39-variant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/3:89:99:22,17,29,21
chr1	53289511	.	G	T	311.37	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.449;QD=16.39;ReadPosRankSum=2;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:340,0,354:1,9,0,9
chr1	53290078	.	C	T	105.69	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=3.332;FractionInformativeReads=1;MQ=60;MQRankSum=0.684;QD=13.21;ReadPosRankSum=1.221;SOR=0.105;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:134,0,113:0,3,2,3
chr1	53290310	.	C	CA	157.42	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=2.158;FractionInformativeReads=0.929;MQ=60;MQRankSum=1.62;QD=11.24;ReadPosRankSum=-0.386;SOR=0.307;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:66:195,0,66:3,1,5,4
chr1	53291325	.	TAAAA	TA,TAA,TAAA,T	2024.96	PASS	AC=1,0,0,0;AF=0.298,0.357,0.119,0.06;AN=2;DP=4946;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:63:99:12,7,19,25
chr1	53291550	.	A	G	2541.41	PASS	AC=1;AF=0.7;AN=2;DP=7920;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,105:205:99:2662,0,2487:57,43,62,43
chr1	53292607	.	T	A	6546.51	PASS	AC=2;AF=0.737;AN=2;DP=14592;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,389:389:99:12580,1166,0:0,0,195,194
chr1	53308091	.	ATGTGTGTGTG	ATG,ATGTGTG,A,ATGTGTGTGTGTGTG,ATGTGTGTGTGTG,ATGTG,ATGTGTGTGTGTGTGTG	337.74	PASS	AC=0,0,0,0,0,1,0;AF=0.476,0.024,0.048,0.19,0.024,0.071,0.048;AN=2;DP=90;FS=0;set=variant2-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant19-variant20-variant24-variant25-variant27-variant29-variant31-variant32-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/6:7:99:2,1,3,1
chr1	53308256	.	TCTGGGGAGG	T	830.12	PASS	AC=1;AF=0.667;AN=2;DP=877;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:720,0,941:8,4,11,7
chr1	53308665	.	C	G	2012.19	PASS	AC=1;AF=0.697;AN=2;DP=7467;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,80:179:99:1958,0,2493:35,64,25,55
chr1	53320274	.	G	T	1956.35	PASS	AC=2;AF=0.724;AN=2;DP=5908;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4772,464,0:0,0,69,86
chr1	53322784	.	G	A	1740.57	PASS	AC=1;AF=0.5;AN=2;DP=130;FS=2.201;FractionInformativeReads=1;MQ=60;MQRankSum=-0.983;QD=13.39;ReadPosRankSum=0.382;SOR=0.523;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:63,67:130:99:1769,0,1579:28,35,33,34
chr1	53323492	.	C	A	1400.66	PASS	AC=2;AF=0.915;AN=2;DP=1055;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1034,78,0:0,0,2,24
chr1	53333116	.	A	G	188.41	PASS	AC=1;AF=0.703;AN=2;DP=644;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:365,0,181:6,0,9,3
chr1	53352560	.	A	G	348.74	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=5.927;FractionInformativeReads=1;MQ=60;MQRankSum=2.65;QD=18.35;ReadPosRankSum=0.25;SOR=0.078;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,15:19:99:377,0,105:4,0,9,6
chr1	53361928	.	A	G	680.22	PASS	AC=1;AF=0.5;AN=2;DP=146;FractionInformativeReads=1;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,50:85:99:1194,0,847:19,16,31,19
chr1	53364976	.	A	G	943.52	PASS	AC=2;AF=0.724;AN=2;DP=3211;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2516,240,0:0,0,37,43
chr1	53365104	.	A	G	550.83	PASS	AC=1;AF=0.5;AN=2;DP=102;FractionInformativeReads=1;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,8:36:99:171,0,806:11,17,4,4
chr1	53365235	.	G	C	115.2	PASS	AC=2;AF=0.724;AN=2;DP=797;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:410,39,0:0,0,4,9
chr1	53387215	.	G	A	1949.35	PASS	AC=1;AF=0.5;AN=2;DP=394;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:105,87:192:99:1930,0,2645:54,51,44,43
chr1	53387379	.	G	C	983.98	PASS	AC=1;AF=0.703;AN=2;DP=3130;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,54:90:99:1479,0,983:17,19,20,34
chr1	53392908	.	A	G	302.38	PASS	AC=2;AF=0.743;AN=2;DP=721;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:565,48,0:0,0,6,10
chr1	53407406	.	CA	C,CAAA	92.46	PASS	AC=1,0;AF=0.417,0.083;AN=2;DP=182;set=variant4-filterInvariant9-filterInvariant19-filterInvariant27-variant39-variant41	GT:DP:GQ:SB	0/1:23:99:7,4,8,4
chr1	53453640	.	A	G	606.22	PASS	AC=1;AF=0.6;AN=2;DP=179;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant11-variant23-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:191,0,279:7,1,6,1
chr1	53453683	.	C	T	775.56	PASS	AC=1;AF=0.6;AN=2;DP=403;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant11-variant23-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,24:53:99:575,0,805:21,8,16,8
chr1	53453714	.	G	T	471.5	PASS	AC=1;AF=0.5;AN=2;DP=577;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,37:80:99:770,0,1003:26,17,21,16
chr1	53453930	.	A	T	78.72	PASS	AC=1;AF=0.5;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant11-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:143,0,202:0,5,0,4
chr1	53459690	.	C	T	7250.03	PASS	AC=1;AF=0.5;AN=2;DP=3643;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:248,245:493:99:6170,0,6156:133,115,134,111
chr1	53493832	.	T	C	213.35	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.882;QD=8.21;ReadPosRankSum=1.349;SOR=0.511;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:242,0,389:6,9,5,6
chr1	53504411	.	G	A	72.71	PASS	AC=2;AF=0.6;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:136,12,0:0,0,3,1
chr1	53513437	.	T	C	941.41	PASS	AC=1;AF=0.672;AN=2;DP=568;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:244,0,681:16,1,7,1
chr1	53513768	.	C	G	1432.66	PASS	AC=1;AF=0.5;AN=2;DP=888;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,48:100:99:1166,0,1407:21,31,16,32
chr1	53513837	.	G	C	868.24	PASS	AC=1;AF=0.5;AN=2;DP=568;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,25:66:99:692,0,1167:23,18,8,17
chr1	53513982	.	C	T	816.14	PASS	AC=1;AF=0.5;AN=2;DP=604;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,18:63:99:391,0,1307:21,24,10,8
chr1	53514066	.	C	G	986.72	PASS	AC=1;AF=0.5;AN=2;DP=682;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,29:66:99:907,0,945:20,17,21,8
chr1	53514350	.	C	T	2109.58	PASS	AC=1;AF=0.5;AN=2;DP=1529;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,73:162:99:1580,0,2207:38,51,34,39
chr1	53514497	.	C	G	1646.02	PASS	AC=1;AF=0.5;AN=2;DP=963;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,40:95:99:1124,0,1675:38,17,24,16
chr1	53514628	.	A	G	4450.11	PASS	AC=1;AF=0.5;AN=2;DP=3561;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:203,174:377:99:3943,0,4986:104,99,93,81
chr1	53514728	.	A	G	9902.35	PASS	AC=1;AF=0.6;AN=2;DP=3068;MQ=60;set=variant-variant5-variant9-variant11-variant23-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:178,135:313:99:3572,0,4586:75,103,62,73
chr1	53515101	.	C	A	670.86	PASS	AC=1;AF=0.5;AN=2;DP=275;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:427,0,450:8,5,10,4
chr1	53515305	.	G	A	2321.3	PASS	AC=1;AF=0.55;AN=2;DP=644;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant11-variant23-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:919,0,806:13,16,15,19
chr1	53515596	.	A	G	4518.17	PASS	AC=1;AF=0.5;AN=2;DP=2557;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,127:252:99:3138,0,2982:58,67,63,64
chr1	53516017	.	G	C	2895.61	PASS	AC=1;AF=0.5;AN=2;DP=1231;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,64:155:99:1903,0,2691:44,47,31,33
chr1	53517401	.	T	C	2256.08	PASS	AC=1;AF=0.5;AN=2;DP=1463;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,89:161:99:2219,0,1811:26,46,37,52
chr1	53527948	.	T	G	2683.12	PASS	AC=1;AF=0.6;AN=2;DP=978;MQ=60;set=variant-variant5-variant9-variant11-variant23-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,58:100:99:1216,0,826:21,21,30,28
chr1	53527996	.	A	G	1905.27	PASS	AC=1;AF=0.6;AN=2;DP=613;MQ=60;set=variant-variant5-variant9-variant11-variant23-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,36:65:99:795,0,517:12,17,15,21
chr1	53528955	.	G	A	77.13	PASS	AC=1;AF=0.5;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:143,0,112:3,2,3,3
chr1	53532609	.	T	C	340.32	PASS	AC=1;AF=0.5;AN=2;DP=224;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:362,0,542:6,13,4,11
chr1	53535478	.	G	A	1236.26	PASS	AC=1;AF=0.638;AN=2;DP=2641;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,54:110:99:1210,0,2191:30,26,29,25
chr1	53535499	.	C	T	1210.13	PASS	AC=1;AF=0.5;AN=2;DP=723;MQ=60;set=variant-variant5-variant9-variant11-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,61:121:99:1525,0,2137:32,28,32,29
chr1	53537266	.	G	A	4011.22	PASS	AC=1;AF=0.617;AN=2;DP=9718;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:160,158:318:99:3593,0,3977:67,93,71,87
chr1	53543112	.	C	G	1788.6	PASS	AC=2;AF=0.977;AN=2;DP=2399;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2088,156,0:0,0,5,47
chr1	53543312	.	C	T	106.65	PASS	AC=1;AF=0.524;AN=2;DP=841;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant26-variant32-variant33-variant34-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:573,0,671:17,8,13,6
chr1	53544439	.	G	A	10011	PASS	AC=1;AF=0.718;AN=2;DP=16669;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:185,191:376:99:4523,0,4700:87,98,90,101
chr1	53544578	.	T	C	1543.76	PASS	AC=1;AF=0.524;AN=2;DP=3361;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant26-variant32-variant33-variant34-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,67:141:99:1716,0,2048:25,49,23,44
chr1	53544597	.	T	C	1118.32	PASS	AC=2;AF=0.94;AN=2;DP=6001;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,121:122:99:4655,340,0:0,1,39,82
chr1	53550187	.	C	T	790.42	PASS	AC=2;AF=0.965;AN=2;DP=1887;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1151,105,0:0,0,26,9
chr1	53553485	.	A	G	1247.09	PASS	AC=1;AF=0.726;AN=2;DP=4466;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,82:132:99:2023,0,1143:25,25,41,41
chr1	53553522	.	G	A	584.24	PASS	AC=1;AF=0.524;AN=2;DP=2149;set=variant-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant26-variant32-variant33-variant34-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,42:118:99:1072,0,1854:37,39,18,24
chr1	53553702	.	A	G	2324.32	PASS	AC=2;AF=1;AN=2;DP=4683;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:3022,275,0:0,0,43,49
chr1	53553754	.	T	C	3027.88	PASS	AC=1;AF=0.718;AN=2;DP=4433;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,48:107:99:1372,0,1501:30,29,23,25
chr1	53554533	.	A	AT	471.06	PASS	AC=1;AF=0.524;AN=2;DP=1472;set=variant-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant26-variant32-variant33-variant34-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,36:88:99:1079,0,1682:30,22,21,15
chr1	53555783	.	A	C	781.59	PASS	AC=2;AF=0.929;AN=2;DP=3981;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3096,296,0:0,0,37,62
chr1	53558270	.	A	G	1270.01	PASS	AC=1;AF=0.767;AN=2;DP=5153;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,63:108:99:1696,0,1099:28,17,41,22
chr1	53559310	.	T	C	315.02	PASS	AC=1;AF=0.756;AN=2;DP=1659;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:671,0,765:4,19,2,18
chr1	53568980	.	G	A	242.44	PASS	AC=1;AF=0.542;AN=2;DP=549;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant23-variant26-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:232,0,200:6,1,6,3
chr1	53569399	.	A	G	90.18	PASS	AC=2;AF=0.786;AN=2;DP=497;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:321,27,0:0,0,3,6
chr1	53571288	.	C	G	1066.5	PASS	AC=2;AF=1;AN=2;DP=1280;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.315;ReadPosRankSum=-0.788;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1076,93,0:0,0,21,10
chr1	53574076	.	G	A	554.68	PASS	AC=1;AF=0.756;AN=2;DP=2621;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,45:66:99:1250,0,494:15,6,27,18
chr1	53574123	.	C	T	3255.45	PASS	AC=2;AF=1;AN=2;DP=3899;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3117,285,0:0,0,62,33
chr1	53608375	.	A	G	191.53	PASS	AC=2;AF=1;AN=2;DP=560;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:494,57,0:0,0,8,11
chr1	53608425	.	C	A	189.77	PASS	AC=1;AF=0.75;AN=2;DP=146;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant24-variant33-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:164,0,189:2,5,2,5
chr1	53684525	.	C	G	3093.41	PASS	AC=1;AF=0.805;AN=2;DP=3603;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,45:93:99:1137,0,1156:28,20,27,18
chr1	53686383	.	C	G	400.06	PASS	AC=1;AF=0.805;AN=2;DP=853;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:142,0,344:4,8,3,4
chr1	53712222	.	TG	T	92.64	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=63;FS=6.519;FractionInformativeReads=0.984;MQ=60;MQRankSum=-0.682;QD=1.47;ReadPosRankSum=1.069;SOR=1.195;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:48,14:62:99:130,0,1567:20,28,9,5
chr1	53712223	.	G	A	94.79	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=63;FS=2.441;FractionInformativeReads=0.984;MQ=60;MQRankSum=-1.085;QD=1.5;ReadPosRankSum=0;SOR=1.058;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:47,15:62:99:123,0,965:23,24,6,9
chr1	53712224	.	T	A	101.35	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=62;FS=6.498;FractionInformativeReads=0.984;MQ=60;MQRankSum=-0.918;QD=1.63;ReadPosRankSum=0.986;SOR=1.206;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:47,14:61:99:130,0,1596:20,27,9,5
chr1	53738419	.	C	T	544.9	PASS	AC=1;AF=0.5;AN=2;DP=484;MQ=60;set=variant6-variant12-variant14-variant18-variant20-variant32-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:665,0,564:7,15,7,17
chr1	53746473	.	T	C	952.24	PASS	AC=1;AF=0.5;AN=2;DP=743;FractionInformativeReads=1;MQ=60;set=variant6-variant12-variant14-variant18-variant32-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,46:80:99:1246,0,882:14,20,16,30
chr1	53755117	.	G	A	829.41	PASS	AC=1;AF=0.636;AN=2;DP=653;MQ=60;set=variant5-variant6-variant13-variant15-variant21-variant23-variant29-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,42:63:99:1036,0,502:12,9,28,14
chr1	53792456	.	G	C	1321.38	PASS	AC=1;AF=0.5;AN=2;DP=277;FractionInformativeReads=1;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,70:150:99:1892,0,2135:55,25,51,19
chr1	53792651	.	A	C	1511.81	PASS	AC=2;AF=0.609;AN=2;DP=5091;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5170,483,0:0,0,57,104
chr1	53792821	.	C	T	391.27	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:296,0,533:8,10,7,3
chr1	53792936	.	A	G	638.52	PASS	AC=1;AF=0.5;AN=2;DP=169;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,33:76:99:776,0,1080:23,20,19,14
chr1	53792961	.	T	G	919.44	PASS	AC=1;AF=0.5;AN=2;DP=198;FractionInformativeReads=1;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:977,0,1049:24,18,21,19
chr1	53793170	.	C	T	82.67	PASS	AC=1;AF=0.607;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,9:10:16:235,0,16:0,1,3,6
chr1	53793248	.	T	G	40.7	PASS	AC=2;AF=0.625;AN=2;DP=362;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant9-variant10-variant11-variant12-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:394,36,0:0,0,7,5
chr1	53793294	.	CG	C	238.94	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:149,0,212:5,3,4,2
chr1	53793452	.	T	C	890.31	PASS	AC=1;AF=0.5;AN=2;DP=126;FractionInformativeReads=1;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:778,0,519:11,13,17,16
chr1	53793511	.	T	C	682.58	PASS	AC=2;AF=0.532;AN=2;DP=1505;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,35:37:23:973,23,0:1,1,17,18
chr1	53932181	.	A	G	631.61	PASS	AC=1;AF=0.5;AN=2;DP=492;FractionInformativeReads=1;set=variant-variant6-variant11-variant20-variant21-variant32-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,33:49:99:995,0,384:13,3,25,8
chr1	53933225	.	T	C	48.22	PASS	AC=1;AF=0.625;AN=2;DP=81;FS=0;FractionInformativeReads=1;MQ=60;set=variant11-variant14-variant18-variant20-variant23-variant26-variant32-variant34-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:112,0,156:1,4,1,3
chr1	53972205	.	T	C	1189.48	PASS	AC=1;AF=0.611;AN=2;DP=1883;MQ=60;set=variant-variant5-variant6-variant7-variant11-variant18-variant20-variant21-variant23-variant28-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,40:99:99:1051,0,1776:33,26,26,14
chr1	53974987	.	G	T	805.06	PASS	AC=1;AF=0.829;AN=2;DP=3093;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,40:83:99:947,0,1154:15,28,18,22
chr1	53990321	.	C	T	2116.62	PASS	AC=1;AF=0.837;AN=2;DP=2565;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,38:67:99:1137,0,1006:24,5,29,9
chr1	53990379	.	T	G	1986.94	PASS	AC=1;AF=0.5;AN=2;DP=148;FS=1.348;FractionInformativeReads=1;MQ=60;MQRankSum=-1.139;QD=13.43;ReadPosRankSum=0.56;SOR=0.86;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,75:148:99:2015,0,1801:45,28,49,26
chr1	54060531	.	C	T	1472.23	PASS	AC=1;AF=0.5;AN=2;DP=118;FS=0.681;FractionInformativeReads=1;MQ=60;MQRankSum=-1.004;QD=12.48;ReadPosRankSum=-0.449;SOR=0.77;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,58:118:99:1500,0,1535:27,33,25,33
chr1	54065648	.	G	A	53.54	PASS	AC=1;AF=0.93;AN=2;DP=353;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:72:72,0,114:3,2,2,2
chr1	54065778	.	C	T	659.41	PASS	AC=1;AF=0.932;AN=2;DP=1635;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,24:38:99:648,0,394:9,5,17,7
chr1	54065831	.	G	T	1052.99	PASS	AC=1;AF=0.932;AN=2;DP=2295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,30:47:99:673,0,396:11,6,19,11
chr1	54065924	.	G	A	1481.64	PASS	AC=1;AF=0.932;AN=2;DP=2916;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:29,26:55:99:653,0,703:13,16,10,16
chr1	54065997	.	A	T	1146.95	PASS	AC=1;AF=0.932;AN=2;DP=1846;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:747,0,874:10,14,7,13
chr1	54066012	.	A	G	1003.04	PASS	AC=1;AF=0.932;AN=2;DP=1521;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:708,0,674:6,10,6,12
chr1	54066038	.	C	T	582.66	PASS	AC=1;AF=0.932;AN=2;DP=1004;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:241,0,312:4,8,3,6
chr1	54199734	.	CT	C	58.71	PASS	AC=1;AF=0.5;AN=2;DP=208;MQ=60;set=variant5-variant18-filterInvariant37-filterInvariant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,8:38:93:93,0,603:14,16,3,5
chr1	54231850	.	T	TA	6159.85	PASS	AC=1;AF=0.575;AN=2;DP=6291;set=variant3-variant5-variant6-variant8-variant12-variant13-variant18-variant20-variant21-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,139:281:99:4054,0,4222:65,77,71,68
chr1	54266678	.	C	G	52.74	PASS	AC=1;AF=0.667;AN=2;DP=26;FractionInformativeReads=1;MQ=60;set=variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:156,0,308:0,8,1,4
chr1	54272063	.	A	T	292.29	PASS	AC=1;AF=0.583;AN=2;DP=214;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant28-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,26:42:99:620,0,396:11,5,16,10
chr1	54275333	.	CAG	C	1607.69	PASS	AC=1;AF=0.667;AN=2;DP=241;FractionInformativeReads=1;MQ=60;set=variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,43:89:99:1666,0,1778:29,17,30,13
chr1	54284814	.	C	T	849.56	PASS	AC=1;AF=0.575;AN=2;DP=1160;MQ=60;set=variant3-variant5-variant6-variant8-variant12-variant13-variant18-variant20-variant21-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,26:71:99:581,0,1124:18,27,9,17
chr1	54303780	.	C	T	284.82	PASS	AC=1;AF=0.583;AN=2;DP=133;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant28-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:294,0,501:12,4,8,5
chr1	54317697	.	T	C	1266.61	PASS	AC=2;AF=1;AN=2;DP=2397;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1959,177,0:0,0,23,36
chr1	54318058	.	G	A	242.99	PASS	AC=2;AF=1;AN=2;DP=76;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant10-variant13-variant16-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,2,1
chr1	54337272	.	T	C	118.68	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.597;QD=10.79;ReadPosRankSum=0.597;SOR=1.112;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:147,0,241:1,6,0,4
chr1	54356113	.	C	T	1363.01	PASS	AC=1;AF=0.63;AN=2;DP=2201;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant12-variant14-variant15-variant19-variant20-variant22-variant23-variant24-variant25-variant29-variant31-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,38:104:99:1105,0,1775:42,24,25,13
chr1	54370235	.	A	AG	1018.81	PASS	AC=1;AF=0.545;AN=2;DP=645;MQ=60;set=variant3-variant9-variant10-variant11-variant25-variant27-variant29-variant30-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:423,0,561:15,7,12,5
chr1	54370264	.	A	T	1048.42	PASS	AC=1;AF=0.596;AN=2;DP=2504;set=variant-variant2-variant3-variant6-variant7-variant13-variant14-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,35:66:99:898,0,885:21,10,24,11
chr1	54375570	.	C	A	4527.08	PASS	AC=1;AF=0.672;AN=2;DP=4928;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant14-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,65:124:99:1653,0,1574:27,32,35,30
chr1	54375701	.	C	T	1180.88	PASS	AC=1;AF=0.6;AN=2;DP=2360;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant14-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,46:97:99:1247,0,1250:22,29,22,24
chr1	54375907	.	C	A	908.24	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.542;QD=17.81;ReadPosRankSum=1.056;SOR=0.743;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,29:51:99:936,0,764:15,7,20,9
chr1	54376034	.	C	T	1764.7	PASS	AC=1;AF=0.5;AN=2;DP=144;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.238;QD=12.25;ReadPosRankSum=-1.492;SOR=0.64;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,72:144:99:1793,0,1863:38,34,37,35
chr1	54389200	.	A	G	2860.51	PASS	AC=1;AF=0.526;AN=2;DP=3047;MQ=60;set=variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,66:134:99:1554,0,1780:46,22,41,25
chr1	54389658	.	T	G	427.24	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.729;QD=8.38;ReadPosRankSum=-0.21;SOR=0.662;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,17:51:99:455,0,872:12,22,6,11
chr1	54389774	.	TAG	T	266.18	PASS	AC=1;AF=0.69;AN=2;DP=250;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant14-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:70:204,0,70:0,2,0,5
chr1	54395673	.	CA	C	395.49	PASS	AC=1;AF=0.5;AN=2;DP=4259;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,35:73:99:506,0,494:22,16,21,14
chr1	54411541	.	CCTCCACCGAGTTCCCGGGCGCGCTCG	C	117.08	PASS	AC=1;AF=0.538;AN=2;DP=176;set=variant8-variant9-variant10-variant15-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:175,0,1887:4,5,2,3
chr1	54411872	.	G	A	1158.44	PASS	AC=1;AF=0.5;AN=2;DP=134;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.111;QD=8.65;ReadPosRankSum=-0.256;SOR=0.69;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,54:134:99:1187,0,1825:37,43,25,29
chr1	54412181	.	T	C	959.33	PASS	AC=1;AF=0.525;AN=2;DP=982;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,20:49:99:470,0,685:11,18,9,11
chr1	54413422	.	C	T	202.13	PASS	AC=1;AF=0.529;AN=2;DP=346;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant10-variant13-variant15-variant17-variant18-variant20-variant21-variant29-variant30-variant31-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:85:85,0,371:8,7,3,3
chr1	54432019	.	G	A	1434.44	PASS	AC=1;AF=0.525;AN=2;DP=1873;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant27-variant29-variant30-variant31-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,42:95:99:973,0,1277:25,28,21,21
chr1	54476147	.	G	A	491.96	PASS	AC=1;AF=0.5;AN=2;DP=303;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant17-variant20-variant29-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,13:37:99:290,0,639:8,16,6,7
chr1	54483636	.	C	T	316.57	PASS	AC=1;AF=0.5;AN=2;DP=175;FractionInformativeReads=1;set=variant5-variant10-variant12-variant20-variant29-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:483,0,363:5,2,10,2
chr1	54483641	.	C	G	350.13	PASS	AC=1;AF=0.5;AN=2;DP=188;FractionInformativeReads=1;set=variant5-variant10-variant12-variant20-variant29-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:483,0,363:5,2,10,2
chr1	54497983	.	A	C	601.74	PASS	AC=1;AF=0.5;AN=2;DP=133;FractionInformativeReads=1;MQ=60;set=variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,19:49:99:466,0,890:8,22,6,13
chr1	54502266	.	G	GTC	1320.84	PASS	AC=2;AF=0.563;AN=2;DP=785;MQ=60;set=variant9-variant12-variant18-variant29-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3960,265,0:0,0,51,36
chr1	54502268	.	A	AAGGGTT	1351.2	PASS	AC=2;AF=0.563;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant18-variant29-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:4076,279,0:0,0,52,36
chr1	54509594	.	T	C	3819.64	PASS	AC=1;AF=0.5;AN=2;DP=921;MQ=60;set=variant9-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:139,130:269:99:3329,0,3489:69,70,57,73
chr1	54509616	.	C	T	2932.48	PASS	AC=1;AF=0.5;AN=2;DP=794;FractionInformativeReads=1;MQ=60;set=variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:132,131:263:99:3095,0,3300:58,74,63,68
chr1	54509644	.	T	C	9275.9	PASS	AC=2;AF=1;AN=2;DP=12229;FS=0;MQ=60;MQRankSum=0.014;ReadPosRankSum=0.839;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,226:226:99:7023,676,0:0,0,101,125
chr1	54510012	.	C	CTCAAAA,CTCAAAAAAAA,CTCAAAAA,CTCAAAAAA,CTCAAAAAAAAA,CTCAAAAAAA	1560.06	PASS	AC=0,0,0,0,0,2;AF=0.125,0.167,0.208,0.208,0.125,0.083;AN=2;DP=174;set=variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant27-variant30-variant39-variant41-variant42	GT:DP:GQ:SB	6/6:14:78:0,0,11,3
chr1	54510014	.	C	CAAAAAA,A	2124.97	PASS	AC=0,2;AF=0.025,0.95;AN=2;DP=601;set=variant2-variant4-variant5-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant27-variant29-variant30-variant34-variant38-variant39-variant41-variant42	GT:DP:GQ:SB	2/2:27:80:0,0,19,8
chr1	54510181	.	GT	G,GTT	213.14	PASS	AC=1,0;AF=0.453,0.047;AN=2;DP=2622;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-variant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant31-filterInvariant32-variant33-variant34-filterInvariant35-filterInvariant37-filterInvariant38-variant40-filterInvariant41	GT:DP:GQ:SB	0/1:43:88:10,21,3,9
chr1	54510545	.	A	G	3844.48	PASS	AC=1;AF=0.5;AN=2;DP=269;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.809;QD=14.29;ReadPosRankSum=-0.682;SOR=0.682;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:117,152:269:99:3873,0,2596:65,52,84,68
chr1	54511200	.	A	G	1821.42	PASS	AC=1;AF=0.5;AN=2;DP=822;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant18-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,65:134:99:1780,0,1799:41,28,44,21
chr1	54513323	.	A	G	1228.64	PASS	AC=2;AF=0.563;AN=2;DP=1167;MQ=60;set=variant9-variant12-variant18-variant29-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,149:150:99:3919,441,0:1,0,70,79
chr1	54519107	.	G	A	555.74	PASS	AC=1;AF=0.5;AN=2;DP=378;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant15-variant18-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,16:52:99:354,0,1091:16,20,6,10
chr1	54519158	.	G	A	300.8	PASS	AC=1;AF=0.5;AN=2;DP=222;MQ=60;set=variant9-variant12-variant18-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:492,0,657:7,13,10,10
chr1	54519800	.	G	A	900.59	PASS	AC=1;AF=0.5;AN=2;DP=459;MQ=60;set=variant9-variant12-variant18-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,35:85:99:824,0,1262:29,21,18,17
chr1	54554163	.	G	T	449.02	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.913;QD=14.97;ReadPosRankSum=0;SOR=1.119;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:477,0,417:12,3,13,2
chr1	54561916	.	C	T	804.87	PASS	AC=2;AF=0.771;AN=2;DP=1168;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant27-variant29-variant30-variant34-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1748,165,0:0,0,37,18
chr1	54562444	.	A	G	919.16	PASS	AC=1;AF=0.5;AN=2;DP=556;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant16-variant18-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:831,0,945:21,17,16,20
chr1	54562950	.	G	GT	1252.24	PASS	AC=1;AF=0.5;AN=2;DP=370;MQ=60;set=variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:68,49:117:99:1122,0,2705:38,30,30,19
chr1	54562966	.	T	C	2149.64	PASS	AC=1;AF=0.5;AN=2;DP=841;MQ=60;set=variant9-variant12-variant18-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,75:127:99:2916,0,2063:33,19,44,31
chr1	54562980	.	C	CT	2324.94	PASS	AC=1;AF=0.5;AN=2;DP=993;MQ=60;set=variant9-variant12-variant18-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,81:144:99:3002,0,2207:41,22,47,34
chr1	54563039	.	G	A	6923.58	PASS	AC=2;AF=0.977;AN=2;DP=11128;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,214:214:99:6371,639,0:0,0,119,95
chr1	54563156	.	A	G	2263.2	PASS	AC=2;AF=0.771;AN=2;DP=3810;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant27-variant29-variant30-variant34-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:5029,441,0:0,0,69,78
chr1	54563522	.	G	A	3859.28	PASS	AC=1;AF=0.5;AN=2;DP=1797;MQ=60;set=variant9-variant12-variant18-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:166,149:315:99:3974,0,4206:92,74,79,70
chr1	54605062	.	A	AT	526.02	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=2.488;FractionInformativeReads=0.941;MQ=60;MQRankSum=-2.002;QD=10.31;ReadPosRankSum=0.124;SOR=0.815;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:563,0,616:11,14,13,10
chr1	54605318	.	T	TG,TGG	403.76	PASS	AC=0,1;AF=0.34,0.26;AN=2;DP=1407;MQ=60;set=variant-variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant25-variant27-variant29-variant30-variant33-variant34-variant35-filterInvariant36-variant37-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:58:99:18,16,15,9
chr1	54605319	.	G	GC	315.63	PASS	AC=1;AF=0.716;AN=2;DP=2227;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:1107,0,1003:17,11,17,16
chr1	54606804	.	C	T	3171.84	PASS	AC=2;AF=0.872;AN=2;DP=4859;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3290,308,0:0,0,66,37
chr1	54607051	.	A	G	4671.27	PASS	AC=2;AF=1;AN=2;DP=8469;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:5017,464,0:0,0,51,104
chr1	54607157	.	G	A	1506.45	PASS	AC=2;AF=0.872;AN=2;DP=2137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1386,117,0:0,0,12,27
chr1	54618435	.	A	T	1472.1	PASS	AC=2;AF=0.756;AN=2;DP=7763;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,160:162:99:4892,436,0:1,1,96,64
chr1	54619106	.	C	T	656.02	PASS	AC=1;AF=0.553;AN=2;DP=861;MQ=60;set=variant2-variant3-variant8-variant10-variant11-variant20-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:447,0,620:10,13,8,11
chr1	54619337	.	C	T	813.08	PASS	AC=2;AF=0.932;AN=2;DP=1418;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:792,78,0:0,0,14,12
chr1	54637167	.	T	C	86.95	PASS	AC=1;AF=0.775;AN=2;DP=605;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:386,0,393:3,10,3,10
chr1	54681920	.	G	C	4098.39	PASS	AC=1;AF=0.826;AN=2;DP=6892;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,66:161:99:1539,0,2306:45,50,30,36
chr1	54683856	.	C	G	1140.33	PASS	AC=1;AF=0.531;AN=2;DP=1900;MQ=60;set=variant2-variant3-variant6-variant9-variant10-variant12-variant17-variant18-variant19-variant27-variant28-variant29-variant31-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,45:101:99:1100,0,1352:31,25,22,23
chr1	54686374	.	T	C	738.23	PASS	AC=1;AF=0.671;AN=2;DP=3997;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,43:99:99:1242,0,1459:29,27,25,18
chr1	54686464	.	C	T	1941.25	PASS	AC=1;AF=0.523;AN=2;DP=3603;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant23-variant24-variant25-variant27-variant28-variant31-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,83:157:99:1964,0,1782:34,40,38,45
chr1	54703630	.	C	T	1555.13	PASS	AC=1;AF=0.75;AN=2;DP=117;FractionInformativeReads=1;MQ=60;MQRankSum=-0.939;ReadPosRankSum=0.132;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:801,0,1106:26,11,20,10
chr1	54703702	.	C	A	2545.84	PASS	AC=1;AF=0.75;AN=2;DP=193;FS=0;MQ=60;MQRankSum=1.346;ReadPosRankSum=-2.066;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,53:106:99:1307,0,1349:31,22,31,22
chr1	54704563	.	G	A	243.82	PASS	AC=1;AF=0.553;AN=2;DP=949;MQ=60;set=variant-variant5-variant6-variant15-variant16-variant17-variant19-variant21-variant22-variant25-variant28-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:620,0,659:11,12,11,13
chr1	54704567	.	A	G	1203.72	PASS	AC=2;AF=0.942;AN=2;DP=1881;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1897,144,0:0,0,23,25
chr1	54706733	.	A	G	629.55	PASS	AC=1;AF=0.712;AN=2;DP=2679;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,39:74:99:1068,0,906:12,23,14,25
chr1	54870614	.	G	C	650.36	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.119;QD=15.86;ReadPosRankSum=0.357;SOR=0.663;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:679,0,431:4,13,6,18
chr1	54872035	.	TGCCGCCGCC	TGCCGCC,T	4449.98	PASS	AC=2,0;AF=0.932,0.011;AN=2;DP=3387;set=Intersection	GT:DP:GQ:SB	1/1:87:99:0,0,47,40
chr1	55014099	.	C	T	1466.01	PASS	AC=2;AF=0.786;AN=2;DP=5274;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3782,350,0:0,0,45,72
chr1	55014160	.	C	T	888.54	PASS	AC=1;AF=0.786;AN=2;DP=3068;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,33:69:99:991,0,875:14,22,8,25
chr1	55070554	.	T	C	190.35	PASS	AC=1;AF=0.5;AN=2;DP=30;FractionInformativeReads=1;MQ=60;set=variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:255,0,230:7,4,6,1
chr1	55072856	.	G	A	3107.29	PASS	AC=1;AF=0.5;AN=2;DP=229;FS=2.961;FractionInformativeReads=1;MQ=60;MQRankSum=1.16;QD=13.57;ReadPosRankSum=2.659;SOR=0.916;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:108,121:229:99:3136,0,2680:57,51,70,51
chr1	55073719	.	G	A	1319.28	PASS	AC=1;AF=0.5;AN=2;DP=177;FractionInformativeReads=1;MQ=60;set=variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,45:85:99:1077,0,928:18,22,15,30
chr1	55074922	.	G	A	1130.34	PASS	AC=1;AF=0.583;AN=2;DP=2637;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant15-variant17-variant20-variant23-variant25-variant28-variant31-variant33-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,71:147:99:1954,0,1899:46,30,46,25
chr1	55076197	.	C	T	866.22	PASS	AC=1;AF=0.5;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,34:89:99:794,0,1381:21,34,13,21
chr1	55078046	.	T	C	772.11	PASS	AC=1;AF=0.907;AN=2;DP=1094;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:478,0,374:10,0,13,0
chr1	55080612	.	GGTGT	G,GGTGTGTGTGT,GGTGTGTGT	2367.76	PASS	AC=1,0,0;AF=0.273,0.477,0.011;AN=2;DP=4698;set=Intersection	GT:DP:GQ:SB	0/1:98:99:18,33,19,28
chr1	55080629	.	A	G	2467.89	PASS	AC=1;AF=0.739;AN=2;DP=3722;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,47:94:99:1788,0,2780:17,30,19,28
chr1	55080745	.	TAG	T	118.68	PASS	AC=1;AF=0.611;AN=2;DP=304;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant15-variant17-variant20-variant23-variant24-variant25-variant28-variant31-variant33-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:252,0,399:1,9,0,7
chr1	55080833	.	G	T	61.77	PASS	AC=2;AF=1;AN=2;DP=2;FS=0;FractionInformativeReads=1;MQ=60;QD=30.88;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,1,1
chr1	55080844	.	C	G	250.2	PASS	AC=2;AF=0.667;AN=2;DP=66;FS=0;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant15-variant17-variant23-variant24-variant25-variant31-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,1,1
chr1	55107607	.	G	A	315.93	PASS	AC=2;AF=1;AN=2;DP=1091;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:672,63,0:0,0,12,9
chr1	55117497	.	T	G	138.89	PASS	AC=2;AF=0.906;AN=2;DP=290;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:227,24,0:0,0,4,4
chr1	55118566	.	C	G	2343.41	PASS	AC=2;AF=1;AN=2;DP=5145;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3073,282,0:0,0,53,41
chr1	55119144	.	A	G	1695.21	PASS	AC=1;AF=0.645;AN=2;DP=4552;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,67:123:99:1712,0,1416:29,27,36,31
chr1	55119289	.	G	C	5352.67	PASS	AC=2;AF=0.705;AN=2;DP=6215;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4993,470,0:0,0,82,75
chr1	55119546	.	A	G	3176.3	PASS	AC=2;AF=1;AN=2;DP=8282;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:5429,534,0:0,0,89,90
chr1	55129358	.	TA	TAA,T	117.7	PASS	AC=0,1;AF=0.278,0.222;AN=2;DP=181;MQ=60;set=variant10-variant15-variant21-variant26-filterInvariant31-variant36-variant38-variant39-variant41	GT:DP:GQ:SB	0/2:16:97:7,3,5,1
chr1	55129372	.	A	C	295.54	PASS	AC=1;AF=0.615;AN=2;DP=668;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant30-variant32-variant35-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:483,0,476:9,4,10,4
chr1	55129374	.	AC	A	286.54	PASS	AC=1;AF=0.64;AN=2;DP=691;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant19-variant20-variant22-variant24-variant25-variant27-variant30-variant32-variant35-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:483,0,476:9,4,10,4
chr1	55129564	.	T	C	684.31	PASS	AC=1;AF=0.5;AN=2;DP=179;FractionInformativeReads=1;MQ=60;set=variant12-variant13-variant23-variant30-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:488,0,474:6,12,6,13
chr1	55130931	.	C	T	731.34	PASS	AC=1;AF=0.689;AN=2;DP=2695;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,44:78:99:1115,0,845:11,23,14,30
chr1	55130946	.	G	C	644.13	PASS	AC=2;AF=0.703;AN=2;DP=2158;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2024,180,0:0,0,18,42
chr1	55130972	.	C	T	259.9	PASS	AC=2;AF=0.884;AN=2;DP=1694;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1349,119,0:0,0,12,28
chr1	55134379	.	C	T	490.9	PASS	AC=2;AF=0.884;AN=2;DP=1085;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:758,60,0:0,0,17,3
chr1	55134603	.	A	G	739.68	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=1.072;FractionInformativeReads=1;MQ=60;MQRankSum=0.161;QD=14.5;ReadPosRankSum=0.445;SOR=0.769;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:768,0,709:12,11,13,15
chr1	55136067	.	T	G	285.14	PASS	AC=2;AF=0.895;AN=2;DP=1261;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:972,81,0:0,0,22,5
chr1	55136529	.	T	C	1047.48	PASS	AC=1;AF=0.619;AN=2;DP=2552;MQ=60;set=variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant23-variant24-variant25-variant26-variant28-variant31-variant34-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,62:121:99:1371,0,1419:28,31,33,29
chr1	55138673	.	C	T	157.76	PASS	AC=1;AF=0.611;AN=2;DP=236;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant9-variant12-variant13-variant17-variant23-variant24-variant25-variant26-variant28-variant31-variant34-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:349,0,177:5,0,9,2
chr1	55139741	.	A	G	1115.68	PASS	AC=2;AF=0.86;AN=2;DP=3946;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2052,200,0:0,0,33,34
chr1	55144986	.	C	T	1553.79	PASS	AC=1;AF=0.5;AN=2;DP=126;FS=3.247;FractionInformativeReads=1;MQ=60;MQRankSum=0.567;QD=12.33;ReadPosRankSum=-0.965;SOR=0.768;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,70:126:99:1582,0,1253:26,30,38,32
chr1	55166842	.	C	T	832.68	PASS	AC=1;AF=0.704;AN=2;DP=1029;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant28-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:593,0,509:12,9,14,7
chr1	55167773	.	T	A	2209.81	PASS	AC=1;AF=0.837;AN=2;DP=3909;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,37:82:99:889,0,1048:20,25,17,20
chr1	55175322	.	A	G	529	PASS	AC=1;AF=0.677;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:228,0,315:8,1,6,2
chr1	55246522	.	T	C	491.35	PASS	AC=1;AF=0.536;AN=2;DP=510;MQ=60;set=variant4-variant6-variant9-variant14-variant16-variant17-variant22-variant23-variant24-variant27-variant30-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:514,0,563:10,9,11,7
chr1	55247097	.	G	A	1327.88	PASS	AC=1;AF=0.529;AN=2;DP=1149;MQ=60;set=variant3-variant8-variant10-variant11-variant12-variant13-variant19-variant20-variant23-variant25-variant27-variant31-variant32-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,35:53:99:793,0,463:10,8,16,19
chr1	55248074	.	A	G	3803.92	PASS	AC=1;AF=0.5;AN=2;DP=3595;MQ=60;set=variant3-variant8-variant10-variant11-variant12-variant13-variant19-variant20-variant23-variant25-variant27-variant31-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:131,114:245:99:2793,0,3090:66,65,57,57
chr1	55250479	.	C	T	1835.03	PASS	AC=1;AF=0.5;AN=2;DP=2082;MQ=60;set=variant3-variant8-variant10-variant11-variant12-variant13-variant19-variant20-variant23-variant25-variant27-variant31-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,78:146:99:1923,0,1678:33,35,37,41
chr1	55251689	.	T	C	2837.61	PASS	AC=2;AF=1;AN=2;DP=4165;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3265,288,0:0,0,63,33
chr1	55252514	.	C	T	518.15	PASS	AC=1;AF=0.5;AN=2;DP=486;MQ=60;set=variant3-variant8-variant10-variant11-variant12-variant13-variant19-variant20-variant23-variant25-variant27-variant31-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,9:31:99:247,0,565:14,8,7,2
chr1	55253346	.	G	A	1767.77	PASS	AC=1;AF=0.545;AN=2;DP=2403;MQ=60;set=variant3-variant8-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,47:84:99:1268,0,995:25,12,28,19
chr1	55253575	.	T	C	2504.49	PASS	AC=2;AF=1;AN=2;DP=4136;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2808,225,0:0,0,35,40
chr1	55266191	.	G	T	1125.94	PASS	AC=1;AF=0.5;AN=2;DP=222;FractionInformativeReads=1;MQ=60;set=variant24-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,41:80:99:994,0,1018:24,15,24,17
chr1	55266845	.	C	T	2205.25	PASS	AC=1;AF=0.654;AN=2;DP=8213;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,106:224:99:2469,0,2922:42,76,44,62
chr1	55271774	.	A	G	1938.32	PASS	AC=1;AF=0.654;AN=2;DP=6845;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,99:170:99:2413,0,1758:40,31,55,44
chr1	55273386	.	T	G	308.4	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=0;MQ=60;set=variant24-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:303,0,393:6,11,3,7
chr1	55273580	.	G	T	663.66	PASS	AC=1;AF=0.667;AN=2;DP=3293;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1138,0,1203:29,25,29,21
chr1	55277430	.	T	A	355.84	PASS	AC=1;AF=0.684;AN=2;DP=1266;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:417,0,368:7,6,8,9
chr1	55277599	.	T	C	3047.53	PASS	AC=2;AF=1;AN=2;DP=6748;FS=0;MQ=60;MQRankSum=1.687;ReadPosRankSum=0.849;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3642,354,0:0,0,68,50
chr1	55279322	.	T	G	172.43	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.58;QD=17.24;ReadPosRankSum=-2.166;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:56:201,0,56:2,1,5,2
chr1	55279345	.	CCCGGCCT	C	367.95	PASS	AC=2;AF=1;AN=2;DP=420;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:630,42,0:0,0,9,5
chr1	55280690	.	G	A	1874.92	PASS	AC=1;AF=0.5;AN=2;DP=145;FS=0.616;FractionInformativeReads=1;MQ=60;MQRankSum=-0.801;QD=12.93;ReadPosRankSum=-2.491;SOR=0.791;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:75,70:145:99:1903,0,1882:40,35,39,31
chr1	55282556	.	A	G	148.16	PASS	AC=1;AF=0.711;AN=2;DP=1414;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:644,0,478:13,7,13,12
chr1	55282584	.	C	G	715.73	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=3.325;FractionInformativeReads=1;MQ=60;MQRankSum=0.302;QD=10.84;ReadPosRankSum=1.123;SOR=1.128;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,32:66:99:744,0,916:18,16,20,12
chr1	55307501	.	A	G	1349.49	PASS	AC=1;AF=0.523;AN=2;DP=2795;MQ=60;set=variant-variant2-variant4-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant27-variant29-variant30-variant32-variant33-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,53:115:99:1235,0,1597:34,28,24,29
chr1	55307640	.	C	T	736.83	PASS	AC=1;AF=0.523;AN=2;DP=1744;MQ=60;set=variant-variant2-variant4-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant27-variant29-variant30-variant32-variant33-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,26:65:99:720,0,1122:14,25,13,13
chr1	55307693	.	C	A	685.97	PASS	AC=1;AF=0.523;AN=2;DP=1574;MQ=60;set=variant-variant2-variant4-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant27-variant29-variant30-variant32-variant33-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,26:55:99:583,0,879:9,20,11,15
chr1	55315351	.	T	C	788.67	PASS	AC=2;AF=1;AN=2;DP=1277;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:574,48,0:0,0,12,4
chr1	55315611	.	C	G	434.54	PASS	AC=2;AF=0.607;AN=2;DP=1256;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1203,108,0:0,0,17,19
chr1	55316082	.	A	C	1014.64	PASS	AC=2;AF=1;AN=2;DP=2012;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,64:65:99:2127,154,0:1,0,29,35
chr1	55316322	.	A	G	315.05	PASS	AC=2;AF=0.607;AN=2;DP=1416;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1583,156,0:0,0,21,31
chr1	55317685	.	G	A	204.1	PASS	AC=1;AF=0.523;AN=2;DP=776;MQ=60;set=variant-variant2-variant4-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant27-variant29-variant30-variant32-variant33-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,17:40:99:452,0,778:11,12,5,12
chr1	55318108	.	C	T	403.82	PASS	AC=1;AF=0.593;AN=2;DP=1734;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:834,0,712:8,19,10,21
chr1	55319008	.	T	C	46.75	PASS	AC=2;AF=0.607;AN=2;DP=937;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:86:943,86,0:0,0,20,9
chr1	55319902	.	A	G	739.66	PASS	AC=1;AF=0.718;AN=2;DP=3432;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:894,0,1098:18,21,13,19
chr1	55330966	.	T	C	1271.51	PASS	AC=2;AF=1;AN=2;DP=1947;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.675;ReadPosRankSum=1.321;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1795,171,0:0,0,38,19
chr1	55336950	.	C	G	121.67	PASS	AC=1;AF=0.675;AN=2;DP=989;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:295,0,432:11,1,7,2
chr1	55446664	.	G	C	3707.51	PASS	AC=1;AF=0.821;AN=2;DP=4442;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,50:91:99:2041,0,2100:25,16,33,17
chr1	55446671	.	C	T	3850.44	PASS	AC=1;AF=0.821;AN=2;DP=4762;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,58:104:99:2190,0,2255:28,18,37,21
chr1	55446697	.	G	A	4037.04	PASS	AC=1;AF=0.821;AN=2;DP=6210;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,70:140:99:1853,0,1835:45,25,47,23
chr1	55457710	.	G	A	4007.12	PASS	AC=1;AF=0.854;AN=2;DP=5467;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,77:157:99:1937,0,2082:34,46,30,47
chr1	55457815	.	C	T	1776.9	PASS	AC=1;AF=0.854;AN=2;DP=3964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,36:88:99:937,0,2035:22,30,19,17
chr1	55457816	.	G	A	1295.95	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=3.972;FractionInformativeReads=1;MQ=60;MQRankSum=0.07;QD=14.56;ReadPosRankSum=0.781;SOR=1.018;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,50:89:99:1324,0,1426:20,19,21,29
chr1	55465047	.	G	A	757.42	PASS	AC=1;AF=0.5;AN=2;DP=244;FractionInformativeReads=1;MQ=60;set=variant11-variant18-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:971,0,648:4,18,3,27
chr1	55470822	.	T	G	926.76	PASS	AC=1;AF=0.5;AN=2;DP=288;FractionInformativeReads=1;MQ=60;set=variant11-variant18-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,25:55:99:704,0,830:7,23,7,18
chr1	55474866	.	G	A	609.24	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=0.918;FractionInformativeReads=1;MQ=60;MQRankSum=-1.647;QD=8.83;ReadPosRankSum=-0.76;SOR=0.675;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,29:69:99:637,0,1145:19,21,15,14
chr1	55505732	.	A	G	4357.89	PASS	AC=2;AF=0.955;AN=2;DP=5856;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4105,387,0:0,0,46,83
chr1	55516781	.	G	T	2367.12	PASS	AC=2;AF=1;AN=2;DP=4447;FS=0;MQ=60;MQRankSum=-0.17;ReadPosRankSum=0.374;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2591,267,0:0,0,54,35
chr1	55517861	.	C	G	729.13	PASS	AC=1;AF=0.647;AN=2;DP=1983;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:640,0,509:12,5,15,6
chr1	55518166	.	G	A	280.12	PASS	AC=1;AF=0.659;AN=2;DP=2342;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,43:64:99:1238,0,538:10,11,28,15
chr1	55518190	.	AC	A,ACC	1031.66	PASS	AC=1,0;AF=0.722,0.042;AN=2;DP=2375;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:65:99:12,9,26,18
chr1	55518316	.	C	T	1085.37	PASS	AC=1;AF=0.625;AN=2;DP=3557;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,65:137:99:1592,0,2102:34,38,39,26
chr1	55518467	.	A	G	842.49	PASS	AC=1;AF=0.567;AN=2;DP=3167;set=variant-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,36:108:99:961,0,1918:29,43,12,24
chr1	55518528	.	C	A	322.46	PASS	AC=1;AF=0.738;AN=2;DP=2619;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,43:62:99:1175,0,530:7,12,12,31
chr1	55523033	.	A	G	1968.13	PASS	AC=2;AF=1;AN=2;DP=4295;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2402,245,0:0,0,39,43
chr1	55523984	.	C	T	88.67	PASS	AC=2;AF=0.92;AN=2;DP=513;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:340,27,0:0,0,5,4
chr1	55524116	.	C	T	254.14	PASS	AC=2;AF=0.92;AN=2;DP=1316;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:924,90,0:0,0,17,13
chr1	55524197	.	A	G	258.28	PASS	AC=2;AF=0.92;AN=2;DP=1434;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:949,93,0:0,0,15,16
chr1	55524237	.	G	A	319.44	PASS	AC=2;AF=0.92;AN=2;DP=1228;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:882,84,0:0,0,12,16
chr1	55524387	.	T	C	262.01	PASS	AC=2;AF=0.911;AN=2;DP=184;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant16-variant17-variant18-variant20-variant22-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:214,15,0:0,0,0,5
chr1	55525400	.	G	A	707.07	PASS	AC=1;AF=0.805;AN=2;DP=1456;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:334,0,237:3,7,4,9
chr1	55527323	.	G	A	1814.01	PASS	AC=1;AF=0.805;AN=2;DP=2334;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,34:60:99:856,0,689:11,15,12,22
chr1	55527479	.	A	G	251.71	PASS	AC=2;AF=0.92;AN=2;DP=393;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:452,36,0:0,0,3,9
chr1	55529187	.	G	A	1395.39	PASS	AC=1;AF=0.932;AN=2;DP=5564;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,69:125:99:1791,0,1409:27,29,31,38
chr1	55529828	.	C	T	1961.29	PASS	AC=1;AF=0.845;AN=2;DP=3177;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,37:82:99:992,0,1330:23,22,19,18
chr1	55530627	.	T	G	4850.47	PASS	AC=2;AF=1;AN=2;DP=4441;FS=0;MQ=60;MQRankSum=0.369;ReadPosRankSum=0.54;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3353,318,0:0,0,36,70
chr1	55532742	.	G	C	1096.79	PASS	AC=2;AF=0.886;AN=2;DP=3270;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2450,213,0:0,0,31,40
chr1	55538385	.	T	C	644.36	PASS	AC=2;AF=0.932;AN=2;DP=1719;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1302,107,0:0,0,30,6
chr1	55541174	.	A	G	2345.44	PASS	AC=1;AF=0.857;AN=2;DP=3409;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,32:78:99:661,0,1150:19,27,15,17
chr1	55541335	.	ACAACACCACCAC	AAACACCACCAC,A	128.41	PASS	AC=1,0;AF=0.438,0.063;AN=2;DP=118;MQ=60;set=variant7-variant13-variant15-variant21-variant24-variant28-variant39-variant41	GT:DP:GQ:SB	0/1:8:99:2,2,0,4
chr1	55541337	.	AACACCACCACC	A	128.41	PASS	AC=1;AF=0.5;AN=2;DP=107;MQ=60;set=variant7-variant15-variant21-variant24-variant28-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:147,0,127:2,2,0,4
chr1	55541338	.	ACACCACCAC	AACCACCAC,A	536.79	PASS	AC=1,0;AF=0.775,0.088;AN=2;DP=553;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:7:99:0,4,1,2
chr1	55541340	.	ACCACCACC	A,AACCACC	121.03	PASS	AC=1,0;AF=0.721,0.081;AN=2;DP=600;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:7:99:0,4,1,2
chr1	55543079	.	T	C	1358.84	PASS	AC=1;AF=0.5;AN=2;DP=758;MQ=60;set=variant-variant3-variant8-variant17-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,54:125:99:1300,0,1817:31,40,26,28
chr1	55545515	.	C	G	452.25	PASS	AC=2;AF=0.886;AN=2;DP=1008;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:771,75,0:0,0,7,18
chr1	55546895	.	T	C	427.21	PASS	AC=1;AF=0.869;AN=2;DP=525;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,3:15:84:84,0,376:11,1,3,0
chr1	55555285	.	G	A	328.53	PASS	AC=1;AF=0.857;AN=2;DP=811;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:213,0,448:10,4,6,2
chr1	55557859	.	A	ATT	505.4	PASS	AC=2;AF=0.932;AN=2;DP=1239;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1205,81,0:0,0,4,23
chr1	55557864	.	C	T	1096.77	PASS	AC=1;AF=0.857;AN=2;DP=1002;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,17:24:99:557,0,167:0,7,3,14
chr1	55558661	.	A	G	370.74	PASS	AC=1;AF=0.875;AN=2;DP=390;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:91:357,0,91:1,3,1,9
chr1	55560796	.	T	C	227.17	PASS	AC=2;AF=0.886;AN=2;DP=665;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:424,30,0:0,0,10,0
chr1	55562125	.	G	T	108.93	PASS	AC=2;AF=0.951;AN=2;DP=330;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,5:6:8:172,8,0:1,0,4,1
chr1	55566411	.	TTAGTC	T	523.58	PASS	AC=2;AF=0.875;AN=2;DP=765;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:800,54,0:0,0,16,2
chr1	55567143	.	T	C	197.59	PASS	AC=2;AF=0.932;AN=2;DP=718;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:870,63,0:0,0,19,2
chr1	55567410	.	A	G	1208.71	PASS	AC=2;AF=0.932;AN=2;DP=4480;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3869,369,0:0,0,51,72
chr1	55572867	.	G	A	2615.81	PASS	AC=1;AF=0.857;AN=2;DP=3373;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,42:72:99:1137,0,875:19,11,27,15
chr1	55575670	.	A	C	362.08	PASS	AC=1;AF=0.882;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:102,0,273:7,0,3,0
chr1	55609728	.	CT	C	86.57	PASS	AC=1;AF=0.5;AN=2;DP=30;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:158,0,158:3,4,5,2
chr1	55614036	.	CAT	C	727.87	PASS	AC=2;AF=0.893;AN=2;DP=538;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:720,48,0:0,0,13,3
chr1	55619422	.	G	A	148.54	PASS	AC=2;AF=0.895;AN=2;DP=196;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,3,0
chr1	55619453	.	ATAC	A	95.8	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant17-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,243:6,0,2,1
chr1	55638075	.	G	A	923.77	PASS	AC=2;AF=0.932;AN=2;DP=3176;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2225,206,0:0,0,47,22
chr1	55643837	.	TA	T	202.72	PASS	AC=2;AF=0.932;AN=2;DP=1701;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1305,114,0:0,0,6,32
chr1	55691131	.	G	A	203.22	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant13-variant17-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:209,0,148:4,1,6,1
chr1	55691384	.	T	C	790.8	PASS	AC=1;AF=0.563;AN=2;DP=544;MQ=60;set=variant-variant3-variant8-variant13-variant17-variant24-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,13:46:99:282,0,798:15,18,4,9
chr1	55691431	.	G	A	592.85	PASS	AC=1;AF=0.5;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant17-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:322,0,599:9,12,5,9
chr1	56961051	.	G	A	1175.47	PASS	AC=2;AF=1;AN=2;DP=2790;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2355,207,0:0,0,37,32
chr1	56961354	.	T	C	1382.1	PASS	AC=2;AF=0.966;AN=2;DP=2715;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1683,164,0:0,0,24,31
chr1	56961584	.	C	T	436.31	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.638;QD=17.45;ReadPosRankSum=2.746;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:465,0,280:5,5,7,8
chr1	56961756	.	A	G	485.75	PASS	AC=1;AF=0.743;AN=2;DP=1111;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:400,0,139:4,2,8,6
chr1	57002613	.	G	A	1112.49	PASS	AC=1;AF=0.5;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,36:84:99:881,0,1304:28,20,23,13
chr1	57002627	.	C	T	1301.01	PASS	AC=1;AF=0.5;AN=2;DP=368;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,40:89:99:952,0,1342:29,20,24,16
chr1	57175158	.	A	C	4232.46	PASS	AC=2;AF=0.667;AN=2;DP=10443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,294:294:99:9226,881,0:0,0,140,154
chr1	57175965	.	A	T	2384.44	PASS	AC=1;AF=0.5;AN=2;DP=208;FS=0.519;FractionInformativeReads=0.995;MQ=60;MQRankSum=-2.052;QD=11.46;ReadPosRankSum=0.484;SOR=0.62;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:113,94:207:99:2413,0,3032:46,67,40,54
chr1	57177789	.	G	A	4262.62	PASS	AC=2;AF=0.652;AN=2;DP=10917;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,324:324:99:10432,969,0:0,0,140,184
chr1	57178926	.	T	G	1554.75	PASS	AC=1;AF=0.595;AN=2;DP=2564;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant21-variant28-variant29-variant33-variant34-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,63:124:99:1734,0,1639:28,33,32,31
chr1	57179521	.	TAA	TA,TAAA,T,TAAAA	254.71	PASS	AC=0,0,0,1;AF=0.235,0.235,0.044,0.029;AN=2;DP=2341;set=variant-variant2-filterInvariant3-variant6-variant8-variant10-filterInvariant11-variant13-variant14-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-filterInvariant31-filterInvariant32-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:35:99:10,5,14,6
chr1	57180072	.	T	G	3223.01	PASS	AC=1;AF=0.5;AN=2;DP=433;FractionInformativeReads=1;MQ=60;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:102,108:210:99:2908,0,2859:49,53,48,60
chr1	57180699	.	GA	G	1841.58	PASS	AC=1;AF=0.519;AN=2;DP=3193;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,62:108:99:1553,0,1005:26,20,37,25
chr1	57180867	.	A	G	6439.51	PASS	AC=1;AF=0.721;AN=2;DP=7202;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,103:223:99:2486,0,3227:64,56,54,49
chr1	57184465	.	T	G	1424.56	PASS	AC=2;AF=0.833;AN=2;DP=1989;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:995,102,0:0,0,20,14
chr1	57185818	.	A	G	3411.71	PASS	AC=2;AF=0.857;AN=2;DP=3747;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2746,270,0:0,0,48,42
chr1	57216949	.	T	C	835.37	PASS	AC=1;AF=0.5;AN=2;DP=566;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant14-variant15-variant17-variant21-variant24-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:614,0,512:6,14,6,16
chr1	57219377	.	C	G	1280.72	PASS	AC=1;AF=0.5;AN=2;DP=1335;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant14-variant15-variant17-variant21-variant24-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,26:63:99:749,0,1002:26,11,20,6
chr1	57219631	.	G	GA	355.57	PASS	AC=2;AF=0.7;AN=2;DP=613;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:365,36,0:0,0,3,9
chr1	57221553	.	G	T	3909.68	PASS	AC=2;AF=0.694;AN=2;DP=2646;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:3381,229,0:0,0,46,29
chr1	57221554	.	A	G	3909.68	PASS	AC=2;AF=0.694;AN=2;DP=2660;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3381,229,0:0,0,46,30
chr1	57224460	.	G	C	2933.88	PASS	AC=2;AF=0.681;AN=2;DP=3568;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:1987,213,0:0,0,37,34
chr1	57232805	.	T	C	148.54	PASS	AC=1;AF=0.615;AN=2;DP=66;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant8-variant11-variant16-variant20-variant23-variant27-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:79,0,34:1,0,2,1
chr1	57257817	.	T	C	1598.94	PASS	AC=2;AF=0.567;AN=2;DP=1328;MQ=60;set=variant3-variant11-variant13-variant16-variant18-variant21-variant24-variant27-variant29-variant30-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2311,225,0:0,0,44,31
chr1	57258111	.	G	C	1006.55	PASS	AC=1;AF=0.5;AN=2;DP=183;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,44:99:99:1117,0,1373:27,28,25,19
chr1	57258485	.	A	G	1640.62	PASS	AC=2;AF=0.563;AN=2;DP=1111;MQ=60;set=variant6-variant9-variant11-variant14-variant16-variant17-variant18-variant20-variant21-variant29-variant30-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2252,195,0:0,0,40,25
chr1	57284773	.	T	C	59.35	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:83:83,0,510:1,0,4,0
chr1	57340727	.	C	A	756.82	PASS	AC=1;AF=0.614;AN=2;DP=1992;MQ=60;set=variant-variant3-variant6-variant7-variant15-variant19-variant20-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,32:81:99:769,0,1265:20,29,13,19
chr1	57347030	.	A	G	939.78	PASS	AC=1;AF=0.5;AN=2;DP=164;FractionInformativeReads=1;MQ=60;set=variant10-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:824,0,745:20,7,21,6
chr1	57347323	.	G	T	709.43	PASS	AC=1;AF=0.5;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant10-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:649,0,615:7,16,6,17
chr1	57351488	.	G	C	195.15	PASS	AC=1;AF=0.5;AN=2;DP=35;FractionInformativeReads=1;MQ=60;set=variant10-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:64:64,0,239:6,1,2,1
chr1	57372541	.	AT	A	738.27	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0.891;FractionInformativeReads=0.935;MQ=60;MQRankSum=-2.183;QD=9.59;ReadPosRankSum=1.066;SOR=0.838;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,34:72:99:776,0,937:17,21,14,20
chr1	57372591	.	C	T	1290.88	PASS	AC=2;AF=0.792;AN=2;DP=1739;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1553,158,0:0,0,22,31
chr1	57373500	.	GAGA	G	620.64	PASS	AC=1;AF=0.591;AN=2;DP=555;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant27-variant29-variant30-variant32-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:332,0,648:11,3,8,1
chr1	57374000	.	A	G	280.05	PASS	AC=1;AF=0.5;AN=2;DP=133;FractionInformativeReads=1;MQ=60;set=variant14-variant21-variant24-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:428,0,366:5,10,2,12
chr1	57378149	.	G	T	1548.77	PASS	AC=1;AF=0.5;AN=2;DP=671;FractionInformativeReads=1;MQ=60;set=variant14-variant21-variant24-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,44:98:99:1674,0,2544:31,23,24,20
chr1	57378150	.	C	T	1548.77	PASS	AC=1;AF=0.5;AN=2;DP=673;FractionInformativeReads=1;MQ=60;set=variant14-variant21-variant24-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,44:98:99:1674,0,2544:31,23,24,20
chr1	57378198	.	T	C	785.96	PASS	AC=1;AF=0.5;AN=2;DP=633;MQ=60;set=variant14-variant21-variant24-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,39:88:99:917,0,1239:22,27,21,18
chr1	57378334	.	T	G	159.62	PASS	AC=1;AF=0.5;AN=2;DP=95;FractionInformativeReads=1;MQ=60;set=variant14-variant21-variant24-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,12:17:99:427,0,151:1,4,2,10
chr1	57383315	.	G	C	787.51	PASS	AC=1;AF=0.5;AN=2;DP=543;FractionInformativeReads=1;MQ=60;set=variant14-variant21-variant24-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,48:83:99:1295,0,938:18,17,25,23
chr1	57383683	.	C	T	3226.21	PASS	AC=1;AF=0.5;AN=2;DP=2221;MQ=60;set=variant14-variant21-variant24-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:160,147:307:99:3476,0,3947:87,73,87,60
chr1	57395251	.	T	C	3207.21	PASS	AC=2;AF=0.875;AN=2;DP=4262;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2514,243,0:0,0,41,40
chr1	57406392	.	T	C	467.92	PASS	AC=1;AF=0.671;AN=2;DP=1137;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:446,0,510:13,5,12,5
chr1	57417633	.	G	GGGATGTGTCCAAGGTCACACA	763.33	PASS	AC=1;AF=0.757;AN=2;DP=401;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:231,0,1354:5,2,4,0
chr1	57422484	.	C	T	6742.71	PASS	AC=2;AF=0.932;AN=2;DP=9498;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:5603,554,0:0,0,96,89
chr1	57422603	.	G	C	753.13	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=8.525;FractionInformativeReads=1;MQ=60;MQRankSum=1.179;QD=11.95;ReadPosRankSum=-2.144;SOR=0.162;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,29:63:99:781,0,1139:5,29,9,20
chr1	57425321	.	G	A	352.48	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=6.291;FractionInformativeReads=1;MQ=60;MQRankSum=0.665;QD=11.02;ReadPosRankSum=-1.349;SOR=2.235;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:381,0,509:7,11,2,12
chr1	57425879	.	C	T	1626.47	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=1.666;FractionInformativeReads=1;MQ=60;MQRankSum=-0.92;QD=14.92;ReadPosRankSum=1.899;SOR=0.542;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,64:109:99:1655,0,1163:13,32,21,43
chr1	57431375	.	A	G	929.61	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=2.517;FractionInformativeReads=1;MQ=60;MQRankSum=-0.68;QD=16.03;ReadPosRankSum=-1.715;SOR=0.404;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,37:58:99:958,0,564:16,5,25,12
chr1	57463326	.	C	T	2531.21	PASS	AC=2;AF=0.583;AN=2;DP=3268;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant21-variant23-variant24-variant30-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4876,462,0:0,0,71,83
chr1	57463605	.	G	C	933.2	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=0.819;FractionInformativeReads=1;MQ=60;MQRankSum=1.489;QD=10.73;ReadPosRankSum=-0.508;SOR=0.532;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,39:87:99:961,0,1353:20,28,18,21
chr1	57477034	.	G	C	188.44	PASS	AC=2;AF=0.571;AN=2;DP=236;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant13-variant16-variant18-variant21-variant24-variant30-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:724,57,0:0,0,5,14
chr1	57480424	.	C	G	181.07	PASS	AC=2;AF=0.591;AN=2;DP=109;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant21-variant24-variant30-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:316,24,0:0,0,7,1
chr1	57489137	.	T	C	1449.64	PASS	AC=1;AF=0.5;AN=2;DP=833;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant18-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,39:111:99:1070,0,1877:37,35,26,13
chr1	57489506	.	G	A	210.92	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,9:37:99:206,0,785:13,15,2,7
chr1	57489529	.	A	C	401.48	PASS	AC=1;AF=0.5;AN=2;DP=199;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant18-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,26:31:99:663,0,129:0,5,13,13
chr1	57498844	.	T	TAC,TACAC,TACACAC	539.35	PASS	AC=0,1,0;AF=0.029,0.618,0.029;AN=2;DP=460;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:7:99:3,0,4,0
chr1	57528772	.	A	G	309.11	PASS	AC=2;AF=0.898;AN=2;DP=1352;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1246,116,0:0,0,10,29
chr1	57535198	.	C	A	1408.5	PASS	AC=1;AF=0.615;AN=2;DP=465;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant10-variant21-variant23-variant26-variant33-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:475,0,411:4,11,5,11
chr1	57536941	.	A	G	283.54	PASS	AC=1;AF=0.625;AN=2;DP=118;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant8-variant10-variant21-variant23-variant26-variant33-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:237,0,154:1,4,3,3
chr1	57602383	.	T	C	2013.42	PASS	AC=1;AF=0.531;AN=2;DP=1463;MQ=60;set=variant-variant2-variant4-variant8-variant13-variant16-variant19-variant24-variant25-variant27-variant28-variant33-variant35-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,27:79:99:610,0,1234:23,29,11,16
chr1	57889896	.	C	T	52.74	PASS	AC=1;AF=0.583;AN=2;DP=263;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant11-variant13-variant19-variant28-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:376,0,330:9,5,10,3
chr1	58939335	.	C	T	354.65	PASS	AC=2;AF=1;AN=2;DP=424;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:325,33,0:0,0,8,3
chr1	58939502	.	C	A	4969.28	PASS	AC=2;AF=0.643;AN=2;DP=1771;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant14-variant22-variant25-variant26-variant31-variant32-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4306,399,0:0,0,81,52
chr1	58946539	.	C	CT	1064.26	PASS	AC=1;AF=0.536;AN=2;DP=935;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant14-variant22-variant25-variant26-variant31-variant32-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,41:47:23:1002,0,23:4,2,25,16
chr1	58946861	.	T	G	580.9	PASS	AC=2;AF=0.654;AN=2;DP=225;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant22-variant25-variant26-variant31-variant32-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:829,78,0:0,0,7,19
chr1	58971831	.	G	A	3893.12	PASS	AC=2;AF=0.658;AN=2;DP=2295;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant13-variant14-variant22-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2709,291,0:0,0,43,54
chr1	58971940	.	C	A	829.72	PASS	AC=2;AF=0.658;AN=2;DP=533;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant13-variant14-variant22-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1096,93,0:0,0,7,24
chr1	59004979	.	C	T	3756.04	PASS	AC=2;AF=1;AN=2;DP=5386;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3651,343,0:0,0,44,71
chr1	59041577	.	A	G	466.12	PASS	AC=2;AF=0.682;AN=2;DP=649;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant13-variant14-variant17-variant19-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:907,69,0:0,0,12,11
chr1	59041655	.	T	C	551.11	PASS	AC=2;AF=0.643;AN=2;DP=508;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant14-variant22-variant25-variant26-variant31-variant32-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1014,90,0:0,0,19,11
chr1	59124630	.	AACAC	A,AACACACACACACAC,AACACACACACACACAC,AACACACACACAC,AACACACACAC,AACACACACACACACACAC,AACACACACACACACACACAC,AAC	3716.07	PASS	AC=0,0,0,0,0,0,0,1;AF=0.125,0.295,0.352,0.114,0.023,0.057,0.011,0.011;AN=2;DP=3883;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/8:87:99:43,29,9,6
chr1	59134607	.	C	CAG,CA	5443.28	PASS	AC=2,0;AF=0.989,0.011;AN=2;DP=4688;FS=0;MQ=60;MQRankSum=-0.485;ReadPosRankSum=1.538;set=Intersection	GT:DP:GQ:SB	1/1:99:99:0,0,48,51
chr1	59160735	.	A	G	845.15	PASS	AC=2;AF=0.655;AN=2;DP=640;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant18-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1260,84,0:0,0,22,6
chr1	59160742	.	A	C	874.12	PASS	AC=2;AF=0.636;AN=2;DP=316;MQ=60;set=variant-variant4-variant7-variant8-variant14-variant16-variant25-variant26-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1285,87,0:0,0,22,7
chr1	59160885	.	A	G	1024.45	PASS	AC=2;AF=0.655;AN=2;DP=1733;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant18-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1654,165,0:0,0,22,33
chr1	59160982	.	ATACT	A	400.6	PASS	AC=2;AF=0.655;AN=2;DP=640;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant18-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:810,54,0:0,0,4,14
chr1	59247993	.	C	T	3309.25	PASS	AC=2;AF=0.6;AN=2;DP=1329;MQ=60;set=variant5-variant7-variant13-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,227:227:99:7188,678,0:0,0,121,106
chr1	59248221	.	G	A	2069.25	PASS	AC=2;AF=0.75;AN=2;DP=358;FractionInformativeReads=1;MQ=60;MQRankSum=-0.99;ReadPosRankSum=0.064;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:5290,497,0:0,0,79,87
chr1	59248813	.	G	C	4705.36	PASS	AC=2;AF=1;AN=2;DP=6786;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:5261,458,0:0,0,51,102
chr1	59249031	.	T	G	2145.5	PASS	AC=2;AF=1;AN=2;DP=3077;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1821,177,0:0,0,28,31
chr1	59249347	.	G	C	2252.33	PASS	AC=2;AF=1;AN=2;DP=4282;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2297,213,0:0,0,40,31
chr1	59249359	.	C	CTG	2008.24	PASS	AC=2;AF=0.6;AN=2;DP=436;MQ=60;set=variant5-variant7-variant13-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3094,208,0:0,0,40,29
chr1	59251097	.	T	G	540.12	PASS	AC=2;AF=0.563;AN=2;DP=314;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant11-variant13-variant16-variant23-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1200,81,0:0,0,0,27
chr1	59365079	.	G	T	449.33	PASS	AC=2;AF=0.571;AN=2;DP=882;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant13-variant18-variant21-variant25-variant26-variant28-variant31-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1831,177,0:0,0,21,38
chr1	59844471	.	G	A	1291.4	PASS	AC=1;AF=0.577;AN=2;DP=2625;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant11-variant12-variant19-variant23-variant24-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,52:102:99:1112,0,1157:26,24,29,23
chr1	59978048	.	C	G	894.83	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=3.687;FractionInformativeReads=1;MQ=60;MQRankSum=-2.566;QD=8.36;ReadPosRankSum=-1.503;SOR=0.869;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,41:107:99:923,0,1842:31,35,23,18
chr1	60073698	.	G	T	418.67	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=2.735;FractionInformativeReads=1;MQ=60;MQRankSum=1.965;QD=23.26;ReadPosRankSum=0.903;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,14:18:87:447,0,87:2,2,3,11
chr1	60125857	.	C	A	1021.83	PASS	AC=1;AF=0.625;AN=2;DP=420;FractionInformativeReads=1;MQ=60;set=variant12-variant24-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,59:110:99:1516,0,1310:27,24,34,25
chr1	60126009	.	A	G	724.94	PASS	AC=1;AF=0.625;AN=2;DP=308;MQ=60;set=variant12-variant24-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,49:94:99:1323,0,1003:19,26,20,29
chr1	60139597	.	G	A	167.95	PASS	AC=1;AF=0.625;AN=2;DP=50;FractionInformativeReads=1;MQ=60;set=variant12-variant24-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:231,0,220:5,3,6,2
chr1	60199133	.	G	GTTTT	291.73	PASS	AC=1;AF=0.62;AN=2;DP=393;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:247,0,462:3,8,2,6
chr1	60223460	.	A	G	548.8	PASS	AC=2;AF=0.55;AN=2;DP=652;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant9-variant10-variant13-variant15-variant18-variant20-variant24-variant25-variant26-variant28-variant30-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1068,78,0:0,0,24,2
chr1	60228310	.	T	TTC	1947.29	PASS	AC=1;AF=0.795;AN=2;DP=6509;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:74,90:164:99:3508,0,2927:43,31,52,38
chr1	60228548	.	CT	CTT,C,CTTT,CTTTT	61.5	PASS	AC=0,0,0,1;AF=0.08,0.18,0.26,0.02;AN=2;DP=1559;set=filterInvariant-variant5-variant6-filterInvariant7-variant9-filterInvariant10-filterInvariant14-filterInvariant16-filterInvariant18-variant19-variant20-filterInvariant21-variant25-variant26-variant28-filterInvariant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/4:34:34:0,7,5,22
chr1	60280451	.	C	T	151.77	PASS	AC=1;AF=0.625;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant17-variant19-variant20-variant22-variant26-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:37:81,0,37:1,0,2,0
chr1	60280749	.	GT	G	12087.5	PASS	AC=2;AF=1;AN=2;DP=15049;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,302:302:99:12100,909,0:0,0,157,145
chr1	60280962	.	A	G	226.6	PASS	AC=1;AF=0.6;AN=2;DP=871;MQ=60;set=variant-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant17-variant19-variant20-variant22-variant25-variant26-variant29-variant31-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,24:61:99:684,0,1020:8,29,4,20
chr1	60299820	.	C	G,A	2042.14	PASS	AC=2,0;AF=0.898,0.023;AN=2;DP=3655;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:86:99:0,0,45,41
chr1	60302747	.	C	T	352.15	PASS	AC=1;AF=0.5;AN=2;DP=186;FractionInformativeReads=1;MQ=60;set=variant4-variant19-variant22-variant25-variant26-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:356,0,215:1,6,3,10
chr1	60314703	.	T	C	295.83	PASS	AC=1;AF=0.5;AN=2;DP=328;MQ=60;set=variant4-variant19-variant22-variant25-variant26-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:328,0,387:10,8,9,5
chr1	60328613	.	T	C	391.32	PASS	AC=1;AF=0.5;AN=2;DP=193;FractionInformativeReads=1;MQ=60;set=variant4-variant14-variant16-variant19-variant22-variant25-variant26-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:236,0,196:0,6,1,6
chr1	60340174	.	T	A	3162.01	PASS	AC=1;AF=0.571;AN=2;DP=3247;MQ=60;set=variant4-variant7-variant9-variant10-variant14-variant16-variant19-variant22-variant25-variant26-variant29-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:84,113:197:99:3090,0,2425:42,42,51,62
chr1	60340274	.	A	G	4162.93	PASS	AC=1;AF=0.5;AN=2;DP=2369;MQ=60;set=variant4-variant19-variant22-variant25-variant26-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:134,121:255:99:3103,0,3634:72,62,66,55
chr1	60340527	.	G	A	3583.52	PASS	AC=1;AF=0.5;AN=2;DP=3257;MQ=60;set=variant4-variant7-variant10-variant14-variant16-variant19-variant22-variant25-variant26-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:112,113:225:99:3089,0,3230:51,61,53,60
chr1	60358982	.	T	C	2768.01	PASS	AC=1;AF=0.5;AN=2;DP=2319;MQ=60;set=variant4-variant14-variant16-variant19-variant22-variant25-variant26-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,85:194:99:2012,0,2727:59,50,48,37
chr1	60359077	.	A	T	2860.18	PASS	AC=1;AF=0.5;AN=2;DP=2699;MQ=60;set=variant4-variant14-variant16-variant19-variant22-variant25-variant26-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:107,103:210:99:2595,0,2759:51,56,50,53
chr1	60359156	.	G	A	2863.82	PASS	AC=1;AF=0.5;AN=2;DP=1931;FractionInformativeReads=1;MQ=60;set=variant4-variant19-variant22-variant25-variant26-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:92,102:194:99:2453,0,2359:45,47,47,55
chr1	60373666	.	A	C	902.06	PASS	AC=1;AF=0.567;AN=2;DP=859;MQ=60;set=variant4-variant7-variant9-variant10-variant14-variant16-variant19-variant22-variant25-variant26-variant28-variant29-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,32:49:99:980,0,480:3,14,10,22
chr1	60373775	.	T	C	511.77	PASS	AC=2;AF=0.657;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:510,45,0:0,0,3,12
chr1	60381584	.	C	T	1307.49	PASS	AC=1;AF=0.5;AN=2;DP=980;FractionInformativeReads=1;MQ=60;set=variant4-variant19-variant22-variant25-variant26-variant28-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,51:97:99:1226,0,1199:28,18,28,23
chr1	60391946	.	G	A	117.06	PASS	AC=1;AF=0.556;AN=2;DP=360;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant8-variant10-variant14-variant16-variant17-variant19-variant22-variant25-variant26-variant30-variant31-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:334,0,188:4,3,8,1
chr1	60392494	.	C	A	470.51	PASS	AC=1;AF=0.5;AN=2;DP=327;MQ=60;set=variant4-variant22-variant25-variant26-variant28-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,21:30:99:634,0,266:1,8,6,15
chr1	60466814	.	T	C	791.79	PASS	AC=1;AF=0.707;AN=2;DP=1753;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,35:60:99:931,0,599:13,12,19,16
chr1	60466911	.	ACAG	A	925.35	PASS	AC=2;AF=0.726;AN=2;DP=3845;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,55:59:10:2231,10,0:2,2,28,27
chr1	60475930	.	C	G	363.78	PASS	AC=2;AF=0.779;AN=2;DP=2666;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2489,240,0:0,0,47,33
chr1	60505578	.	A	G	480.75	PASS	AC=2;AF=0.909;AN=2;DP=992;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:821,66,0:0,0,17,5
chr1	61542892	.	A	G	254.14	PASS	AC=2;AF=1;AN=2;DP=1193;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:801,69,0:0,0,18,5
chr1	61548344	.	TTCTC	TTCTCTC,TTC,T	684.58	PASS	AC=1,0,0;AF=0.167,0.25,0.083;AN=2;DP=356;MQ=60;set=variant20-filterInvariant35-filterInvariant36-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:27:99:4,9,7,7
chr1	61553801	.	C	G	503.16	PASS	AC=1;AF=0.5;AN=2;DP=476;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant11-variant22-variant23-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:866,0,916:23,14,20,10
chr1	61743160	.	G	A	3298.98	PASS	AC=1;AF=0.576;AN=2;DP=4028;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,59:124:99:1401,0,1531:33,32,34,25
chr1	61743337	.	G	T	394.73	PASS	AC=1;AF=0.55;AN=2;DP=280;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant18-variant22-variant25-variant27-variant31-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:605,0,557:4,15,5,16
chr1	61818381	.	C	T	600.33	PASS	AC=1;AF=0.5;AN=2;DP=625;MQ=60;set=variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant17-variant19-variant21-variant24-variant27-variant28-variant31-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:494,0,546:5,12,4,13
chr1	61818422	.	A	G	384.2	PASS	AC=1;AF=0.878;AN=2;DP=510;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:451,0,252:3,4,1,11
chr1	61818428	.	TACACACAC	T,TACACACACACAC,TACACAC,TACACACACAC,TACACACACACACAC,TACAC	375.77	PASS	AC=0,0,1,0,0,0;AF=0.056,0.236,0.306,0.292,0.014,0.014;AN=2;DP=398;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:15:99:3,4,1,7
chr1	61869783	.	G	A	2951.53	PASS	AC=1;AF=0.583;AN=2;DP=5134;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant21-variant23-variant26-variant27-variant34-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,96:194:99:2220,0,2335:61,37,56,40
chr1	61872230	.	A	C	131.37	PASS	AC=1;AF=0.5;AN=2;DP=366;MQ=60;set=variant2-variant4-variant9-filterInvariant17-filterInvariant27-filterInvariant29-filterInvariant32-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:223,0,1195:6,9,9,0
chr1	61872232	.	A	C	110.38	PASS	AC=1;AF=0.5;AN=2;DP=413;MQ=60;set=variant2-variant4-variant9-variant17-variant22-filterInvariant27-filterInvariant29-variant32-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:220,0,1229:8,10,7,0
chr1	61872233	.	G	C,A	110.33	PASS	AC=1,0;AF=0.462,0.038;AN=2;DP=508;MQ=60;set=variant2-variant9-variant12-filterInvariant14-variant17-variant22-variant24-variant27-filterInvariant29-variant32-variant38-variant41-variant44	GT:DP:GQ:SB	0/1:23:99:9,10,4,0
chr1	61892301	.	T	TG	3478.93	PASS	AC=2;AF=1;AN=2;DP=4530;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:4141,337,0:0,0,40,72
chr1	61921185	.	AT	ATT,A	3119.62	PASS	AC=1,0;AF=0.5,0.012;AN=2;DP=7615;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:150:99:36,35,46,33
chr1	61921403	.	G	A	1030.05	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.995;QD=13.92;ReadPosRankSum=-1.141;SOR=0.798;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,38:74:99:1058,0,1148:18,18,18,20
chr1	61922046	.	T	TA,TAA	1569.72	PASS	AC=1,0;AF=0.7,0.038;AN=2;DP=2977;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:64:99:18,16,17,13
chr1	61922424	.	GA	G	309.12	PASS	AC=1;AF=0.5;AN=2;DP=436;MQ=60;set=variant11-variant13-variant17-variant18-variant20-variant30-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,27:51:99:574,0,490:16,8,20,7
chr1	61922467	.	G	GAAA,GAA	777.27	PASS	AC=0,1;AF=0.143,0.357;AN=2;DP=378;set=variant11-variant13-variant18-variant36-variant37-variant39-variant41	GT:DP:GQ:SB	0/2:56:99:18,16,13,9
chr1	61922491	.	CA	C	372.99	PASS	AC=1;AF=0.5;AN=2;DP=490;MQ=60;set=variant11-variant13-variant17-variant18-variant20-variant30-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,20:54:99:397,0,751:18,16,11,9
chr1	61923506	.	TA	T	3876.56	PASS	AC=1;AF=0.5;AN=2;DP=2115;MQ=60;set=variant11-variant13-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:174,153:327:99:3147,0,3595:84,90,77,76
chr1	61923883	.	GA	G	1322.8	PASS	AC=1;AF=0.5;AN=2;DP=952;set=variant-variant11-variant13-variant32-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,58:106:99:1285,0,988:24,24,26,32
chr1	61924359	.	CTTT	CTT,CTTTT,CT,C	509.74	PASS	AC=1,0,0,1;AF=0.273,0.152,0.03,0.076;AN=2;DP=4041;set=variant-filterInvariant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant11-variant13-variant14-variant18-variant19-variant20-variant21-variant22-filterInvariant23-filterInvariant24-variant25-filterInvariant28-filterInvariant29-filterInvariant32-filterInvariant33-filterInvariant34-variant35-variant36-variant37-filterInvariant38-variant39-filterInvariant40-variant41-variant43-filterInvariant44	GT:DP:GQ:SB	4/1:60:99:0,1,24,35
chr1	61924937	.	T	TTTTG	3745.05	PASS	AC=1;AF=0.5;AN=2;DP=1252;MQ=60;set=variant13-variant18-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:90,60:150:99:2192,0,4439:48,42,28,32
chr1	61925186	.	G	A	1570	PASS	AC=1;AF=0.5;AN=2;DP=688;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant18-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,44:106:99:958,0,1723:33,29,19,25
chr1	61927876	.	G	A	545.49	PASS	AC=2;AF=0.821;AN=2;DP=2011;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1358,146,0:0,0,26,23
chr1	62149237	.	C	G	1338.7	PASS	AC=1;AF=0.529;AN=2;DP=1321;MQ=60;set=variant4-variant8-variant9-variant12-variant14-variant16-variant18-variant21-variant22-variant23-variant27-variant28-variant29-variant32-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,39:70:99:879,0,648:15,16,19,20
chr1	62160525	.	T	TTA,TTATA	150.99	PASS	AC=0,1;AF=0.458,0.083;AN=2;DP=198;MQ=60;set=variant4-variant8-variant12-variant16-variant18-variant22-variant23-variant28-variant29-variant32-variant36-variant41	GT:DP:GQ:SB	0/2:5:75:0,3,0,2
chr1	62160542	.	A	G	406.49	PASS	AC=2;AF=0.929;AN=2;DP=453;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:172,12,0:0,0,0,4
chr1	62189460	.	T	TA	1169.1	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=0.772;FractionInformativeReads=0.941;MQ=60;MQRankSum=-1.502;QD=11.58;ReadPosRankSum=1.832;SOR=0.647;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,53:95:99:1206,0,892:20,22,27,26
chr1	62208273	.	T	G	790.96	PASS	AC=2;AF=1;AN=2;DP=2126;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1228,123,0:0,0,16,25
chr1	62232031	.	C	T	2978.92	PASS	AC=1;AF=0.943;AN=2;DP=3967;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,27:60:99:652,0,893:20,13,16,11
chr1	62261168	.	A	G	1975.37	PASS	AC=2;AF=0.606;AN=2;DP=6071;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:4898,477,0:0,0,81,78
chr1	62261188	.	G	A	2361.92	PASS	AC=1;AF=0.5;AN=2;DP=377;FS=0;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,83:161:99:2170,0,1757:36,42,39,44
chr1	62263307	.	G	A	58.2	PASS	AC=1;AF=0.597;AN=2;DP=325;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:105,0,263:0,7,0,3
chr1	62321624	.	A	G	502.58	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.084;QD=27.92;ReadPosRankSum=-0.789;SOR=1.863;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:99:531,0,175:5,0,13,0
chr1	62330080	.	T	G	2878.81	PASS	AC=2;AF=1;AN=2;DP=4416;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3204,311,0:0,0,59,45
chr1	62340855	.	G	C	569.01	PASS	AC=1;AF=0.596;AN=2;DP=819;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:491,0,468:11,4,12,4
chr1	62341157	.	T	C	570.04	PASS	AC=1;AF=0.805;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:439,0,241:0,7,1,11
chr1	62350123	.	GTTTTTT	G,GT,GTTT,GTT,GTTTT	1230.72	PASS	AC=0,1,0,0,0;AF=0.256,0.436,0.077,0.051,0.051;AN=2;DP=2005;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:30:99:4,6,2,18
chr1	62365217	.	C	T	1300.29	PASS	AC=2;AF=0.711;AN=2;DP=1904;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1671,165,0:0,0,35,20
chr1	62365428	.	G	GA	532.82	PASS	AC=2;AF=0.632;AN=2;DP=924;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:891,75,0:0,0,4,21
chr1	62374267	.	T	C	361.25	PASS	AC=2;AF=0.769;AN=2;DP=411;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:447,30,0:0,0,0,10
chr1	62380124	.	A	G	631.18	PASS	AC=1;AF=0.692;AN=2;DP=1169;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,20:30:99:631,0,304:9,1,15,5
chr1	62380223	.	G	T	1971.18	PASS	AC=1;AF=0.583;AN=2;DP=2218;set=variant3-variant4-variant7-variant12-variant15-variant16-variant17-variant18-variant23-variant24-variant29-variant33-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,54:108:99:1243,0,1305:33,21,31,23
chr1	62380270	.	C	T	3038.52	PASS	AC=2;AF=0.78;AN=2;DP=5107;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3105,305,0:0,0,45,57
chr1	62380298	.	G	A	2452.33	PASS	AC=1;AF=0.667;AN=2;DP=4112;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,48:90:99:1256,0,997:14,28,18,30
chr1	62393394	.	A	G	4608.49	PASS	AC=2;AF=0.869;AN=2;DP=6478;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:4687,476,0:0,0,87,72
chr1	62417951	.	A	AG	508.43	PASS	AC=2;AF=0.857;AN=2;DP=1862;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,18:19:34:684,34,0:1,0,15,3
chr1	62417952	.	A	AGAGAGAG,AG,AGAGAGAGAG,AGAGAGAGAGAGAG,AGAGAGAGAGAGAGAGAGAG,AGAGAG,AGAGAGAGAGAGAGAGAG,AGAGAGAGAGAG	476.85	PASS	AC=1,0,1,0,0,0,0,0;AF=0.155,0.226,0.333,0.071,0.012,0.012,0.036,0.024;AN=2;DP=1865;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:14:90:1,0,11,2
chr1	62456014	.	G	A	1779.64	PASS	AC=1;AF=0.64;AN=2;DP=3977;MQ=60;set=variant-variant6-variant7-variant8-variant12-variant13-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant29-variant30-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,81:160:99:2052,0,1909:32,47,37,44
chr1	62456048	.	G	A	1438.78	PASS	AC=1;AF=0.594;AN=2;DP=1995;MQ=60;set=variant-variant7-variant13-variant17-variant21-variant22-variant23-variant25-variant30-variant32-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,56:116:99:1505,0,1578:21,39,22,34
chr1	62483415	.	A	G	235.36	PASS	AC=1;AF=0.654;AN=2;DP=138;FS=0;set=variant7-variant8-variant12-variant13-variant22-variant23-variant26-variant29-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:144,0,288:8,0,5,0
chr1	62483599	.	G	A	1740.22	PASS	AC=1;AF=0.625;AN=2;DP=2446;MQ=60;set=variant6-variant7-variant8-variant12-variant13-variant20-variant22-variant23-variant25-variant26-variant29-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,82:158:99:1954,0,1869:39,37,42,40
chr1	62516683	.	G	C	2314.36	PASS	AC=1;AF=0.7;AN=2;DP=7336;set=variant-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,68:179:99:1561,0,2871:46,65,29,39
chr1	62545085	.	C	T	524.71	PASS	AC=1;AF=0.646;AN=2;DP=810;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant17-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:543,0,415:10,3,15,3
chr1	62579523	.	C	T	250.68	PASS	AC=2;AF=0.811;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:307,30,0:0,0,7,3
chr1	62579672	.	A	C	1003.74	PASS	AC=2;AF=0.829;AN=2;DP=1746;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1189,114,0:0,0,21,17
chr1	62579823	.	G	A	930.69	PASS	AC=2;AF=0.795;AN=2;DP=3625;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2514,257,0:0,0,43,43
chr1	62579907	.	C	T	388.59	PASS	AC=1;AF=0.571;AN=2;DP=553;MQ=60;set=variant-variant21-variant29-variant30-variant31-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,40:89:99:824,0,1138:26,23,18,22
chr1	62587014	.	T	TA,TAAA,TAAAA,TAA	1025.01	PASS	AC=1,1,0,0;AF=0.659,0.098,0.049,0.024;AN=2;DP=2811;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:46:99:1,0,16,29
chr1	62593893	.	T	C	118.67	PASS	AC=1;AF=0.73;AN=2;DP=547;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,13:19:99:462,0,171:1,5,2,11
chr1	62594593	.	C	T	1330.63	PASS	AC=1;AF=0.703;AN=2;DP=4126;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,50:111:99:1180,0,1469:32,29,26,24
chr1	62594677	.	T	C	1040.71	PASS	AC=1;AF=0.673;AN=2;DP=2038;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,23:70:99:564,0,1131:18,29,7,16
chr1	62627204	.	C	T	34.49	PASS	AC=2;AF=0.625;AN=2;DP=20;FractionInformativeReads=1;MQ=60;set=variant29-variant30-variant31-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr1	62627241	.	C	T	77.82	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant29-variant30-variant31-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:33:81,0,33:1,0,2,0
chr1	62627675	.	G	A	4985.31	PASS	AC=1;AF=0.718;AN=2;DP=14032;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:145,169:314:99:4660,0,3838:71,74,88,81
chr1	62628500	.	TCC	T	397.61	PASS	AC=1;AF=0.5;AN=2;DP=113;MQ=60;set=variant-variant29-variant30-variant31-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:444,0,233:4,2,6,5
chr1	62629670	.	GA	G,GAAAA,GAAAAA	354.54	PASS	AC=0,0,1;AF=0.346,0.077,0.077;AN=2;DP=511;MQ=60;set=variant4-filterInvariant7-filterInvariant10-variant16-variant18-filterInvariant21-filterInvariant22-variant23-variant27-variant29-variant30-variant36-variant41	GT:DP:GQ:SB	0/3:24:99:1,11,3,9
chr1	62644118	.	A	G	604.98	PASS	AC=2;AF=0.744;AN=2;DP=1602;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1182,99,0:0,0,6,27
chr1	62660669	.	G	C	352.26	PASS	AC=2;AF=0.757;AN=2;DP=1051;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:829,69,0:0,0,5,18
chr1	62672041	.	A	ATTT	67.58	PASS	AC=1;AF=0.726;AN=2;DP=340;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:265,0,372:6,2,4,1
chr1	62672546	.	G	A	2617.26	PASS	AC=2;AF=0.886;AN=2;DP=2267;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1491,149,0:0,0,27,23
chr1	62673037	.	T	C	810.32	PASS	AC=1;AF=0.722;AN=2;DP=2497;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:392,0,775:10,16,9,7
chr1	62673225	.	G	A	806.13	PASS	AC=1;AF=0.722;AN=2;DP=2339;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,16:46:99:379,0,872:15,15,9,7
chr1	62675287	.	G	C	234.58	PASS	AC=1;AF=0.545;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant11-variant17-variant18-variant19-variant21-variant23-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:460,0,562:12,14,12,8
chr1	62675385	.	A	G	410.99	PASS	AC=1;AF=0.545;AN=2;DP=489;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant11-variant17-variant18-variant19-variant21-variant23-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:649,0,518:10,13,13,11
chr1	62675709	.	T	C	599.89	PASS	AC=1;AF=0.545;AN=2;DP=541;MQ=60;set=variant7-variant8-variant11-variant17-variant18-variant19-variant21-variant23-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,29:49:99:818,0,493:13,7,14,15
chr1	62675892	.	A	G	420.98	PASS	AC=1;AF=0.729;AN=2;DP=2797;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,45:81:99:1201,0,885:17,19,23,22
chr1	62676091	.	C	A	952.99	PASS	AC=1;AF=0.577;AN=2;DP=816;MQ=60;set=variant7-variant8-variant11-variant17-variant18-variant19-variant21-variant23-variant27-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:718,0,528:10,11,17,9
chr1	62676441	.	T	C	937.74	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=2.899;FractionInformativeReads=1;MQ=60;MQRankSum=0.114;QD=11.3;ReadPosRankSum=0.36;SOR=0.702;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,41:83:99:966,0,1185:23,19,19,22
chr1	62677723	.	T	C	292.03	PASS	AC=1;AF=0.545;AN=2;DP=198;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant11-variant17-variant18-variant19-variant21-variant23-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:273,0,183:4,4,5,6
chr1	62702637	.	C	T	111.22	PASS	AC=2;AF=0.988;AN=2;DP=368;FractionInformativeReads=1;MQ=60;MQRankSum=-1.733;ReadPosRankSum=-0.533;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:477,48,0:0,0,9,7
chr1	62713224	.	C	G	1518.47	PASS	AC=2;AF=0.989;AN=2;DP=3844;MQ=60;MQRankSum=0.136;ReadPosRankSum=0.716;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2007,195,0:0,0,34,31
chr1	62728596	.	T	C	106.77	PASS	AC=2;AF=0.8;AN=2;DP=236;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:222,15,0:0,0,5,0
chr1	62728628	.	C	T	454.7	PASS	AC=1;AF=0.583;AN=2;DP=274;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant20-variant21-variant22-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:285,0,141:4,0,7,2
chr1	62728784	.	A	G	1536.89	PASS	AC=2;AF=0.756;AN=2;DP=3133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2697,261,0:0,0,50,37
chr1	62728838	.	T	C	2129.46	PASS	AC=2;AF=0.756;AN=2;DP=3674;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:4415,322,0:0,0,59,45
chr1	62728861	.	T	C	2214.23	PASS	AC=2;AF=0.756;AN=2;DP=3938;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:4498,324,0:0,0,56,51
chr1	62728918	.	G	A	1859.59	PASS	AC=2;AF=0.756;AN=2;DP=4721;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3485,341,0:0,0,59,55
chr1	62729015	.	G	A	1826.1	PASS	AC=2;AF=0.756;AN=2;DP=4455;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2936,292,0:0,0,44,54
chr1	62733939	.	G	A	905.48	PASS	AC=2;AF=0.607;AN=2;DP=1232;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant33-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1524,129,0:0,0,29,14
chr1	62737372	.	A	C	1836.27	PASS	AC=2;AF=0.65;AN=2;DP=2090;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2837,269,0:0,0,47,43
chr1	62738077	.	C	T	1845.35	PASS	AC=2;AF=0.694;AN=2;DP=1504;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1517,143,0:0,0,25,23
chr1	62738904	.	T	C	1044.28	PASS	AC=2;AF=0.75;AN=2;DP=3347;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2325,216,0:0,0,36,36
chr1	62739198	.	G	A	3031	PASS	AC=2;AF=0.64;AN=2;DP=2592;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2854,281,0:0,0,46,48
chr1	62739919	.	G	A	1736.24	PASS	AC=1;AF=0.5;AN=2;DP=134;FS=6.342;FractionInformativeReads=1;MQ=60;MQRankSum=-0.421;QD=12.96;ReadPosRankSum=0.946;SOR=0.957;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,66:134:99:1764,0,1741:36,32,28,38
chr1	62740065	.	A	G	4746.64	PASS	AC=2;AF=0.694;AN=2;DP=5129;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:5170,486,0:0,0,87,75
chr1	62740446	.	T	C	1797.73	PASS	AC=2;AF=0.75;AN=2;DP=5429;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:6441,439,0:0,0,79,65
chr1	62740449	.	T	C	1796.75	PASS	AC=2;AF=0.75;AN=2;DP=5496;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:6441,439,0:0,0,78,64
chr1	62902874	.	A	G	2218.79	PASS	AC=2;AF=0.806;AN=2;DP=5222;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3514,333,0:0,0,60,52
chr1	62911191	.	T	C	67.42	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=0;FractionInformativeReads=1;MQ=60;set=variant12-variant31-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:99:326,0,102:0,3,1,8
chr1	62916796	.	T	C	4053.99	PASS	AC=2;AF=0.636;AN=2;DP=5428;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant18-variant20-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,235:235:99:7591,704,0:0,0,135,100
chr1	62939466	.	G	C	109.92	PASS	AC=2;AF=0.667;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant18-variant20-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:226,21,0:0,0,4,3
chr1	62939634	.	C	T	1211.19	PASS	AC=2;AF=1;AN=2;DP=2085;FS=0;MQ=60;MQRankSum=1.256;ReadPosRankSum=0.173;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1522,155,0:0,0,28,24
chr1	62943264	.	C	T	2673.67	PASS	AC=2;AF=1;AN=2;DP=2721;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2127,192,0:0,0,46,18
chr1	62953183	.	C	T	568.13	PASS	AC=2;AF=1;AN=2;DP=885;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:591,51,0:0,0,4,13
chr1	62954372	.	G	GA,GAA	228.21	PASS	AC=2,0;AF=0.571,0.048;AN=2;DP=466;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant12-variant13-variant18-variant20-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant40-variant41-variant44	GT:DP:GQ:SB	1/1:14:44:0,0,13,1
chr1	62960101	.	A	G	869.47	PASS	AC=2;AF=0.636;AN=2;DP=1987;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant18-variant20-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:2982,300,0:0,0,41,59
chr1	62961928	.	T	C	409.95	PASS	AC=2;AF=1;AN=2;DP=457;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:522,36,0:0,0,11,1
chr1	62976472	.	T	G	490.19	PASS	AC=2;AF=1;AN=2;DP=730;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:901,63,0:0,0,0,21
chr1	63027411	.	AG	A	2179.42	PASS	AC=2;AF=1;AN=2;DP=1829;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1291,96,0:0,0,12,20
chr1	63049819	.	G	A	2711.75	PASS	AC=2;AF=0.636;AN=2;DP=4557;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant18-variant20-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6406,631,0:0,0,113,98
chr1	63050598	.	T	G	1291.91	PASS	AC=2;AF=0.636;AN=2;DP=1519;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant18-variant20-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2123,192,0:0,0,19,45
chr1	63070537	.	AGTTAATGTG	A	935.89	PASS	AC=2;AF=0.636;AN=2;DP=1229;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant18-variant20-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1733,121,0:0,0,22,18
chr1	63085483	.	T	TA	30.2	PASS	AC=2;AF=0.778;AN=2;DP=586;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:337,36,0:0,0,9,3
chr1	63090858	.	C	T	99.06	PASS	AC=2;AF=0.636;AN=2;DP=347;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant18-variant20-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:446,33,0:0,0,10,1
chr1	63099023	.	T	C	41.64	PASS	AC=2;AF=0.658;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant12-variant13-variant18-variant20-variant24-variant26-variant28-variant32-variant33-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:684,51,0:0,0,15,2
chr1	63113689	.	T	C	233.09	PASS	AC=2;AF=1;AN=2;DP=368;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:477,36,0:0,0,8,4
chr1	63153953	.	C	T	2460.77	PASS	AC=2;AF=0.636;AN=2;DP=4078;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant18-variant20-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,172:172:99:4664,510,0:0,0,78,94
chr1	63249975	.	A	G	314.9	PASS	AC=2;AF=0.756;AN=2;DP=1062;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:788,72,0:0,0,7,17
chr1	63269580	.	A	G	312.27	PASS	AC=1;AF=0.583;AN=2;DP=330;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant12-variant18-variant28-variant31-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:418,0,409:3,10,3,12
chr1	63270772	.	C	T	534.49	PASS	AC=2;AF=0.636;AN=2;DP=302;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant12-variant18-variant31-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:869,75,0:0,0,18,7
chr1	63270823	.	CT	C	417.23	PASS	AC=1;AF=0.5;AN=2;DP=178;MQ=60;set=variant18-filterInvariant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:568,0,521:14,13,14,14
chr1	63271010	.	T	C	220.18	PASS	AC=1;AF=0.591;AN=2;DP=164;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant18-variant28-variant31-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:91:280,0,91:0,3,1,7
chr1	63285033	.	T	C	278.16	PASS	AC=1;AF=0.583;AN=2;DP=400;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant12-variant18-variant28-variant31-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:488,0,346:3,10,3,13
chr1	63300855	.	TA	TAA,TAAA,T	85.79	PASS	AC=2,0,0;AF=0.5,0.05,0.05;AN=2;DP=169;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant15-variant31-variant33-variant41-variant44	GT:DP:GQ:SB	1/1:16:25:1,0,13,2
chr1	63301192	.	CTT	C	3996.72	PASS	AC=1;AF=0.5;AN=2;DP=178;FS=0.559;FractionInformativeReads=0.994;MQ=60;MQRankSum=0.708;QD=22.45;ReadPosRankSum=0.322;SOR=0.629;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:75,102:177:99:4034,0,3220:34,41,48,54
chr1	63788983	.	CGGCCGGAGCCGG	C	1766.58	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0;FractionInformativeReads=0.851;MQ=60;MQRankSum=1.59;QD=23.87;ReadPosRankSum=1.331;SOR=0.623;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,45:63:99:1804,0,2138:10,8,24,21
chr1	63836513	.	C	G	5087.35	PASS	AC=1;AF=0.525;AN=2;DP=7352;MQ=60;set=variant-variant2-variant7-variant9-variant16-variant17-variant18-variant19-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,141:301:99:3582,0,3854:86,74,73,68
chr1	63870295	.	TACTG	T	383.38	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=2.251;FractionInformativeReads=0.947;MQ=60;MQRankSum=0.272;QD=20.18;ReadPosRankSum=-1.087;SOR=0.19;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:421,0,395:1,6,4,7
chr1	63872871	.	A	G	1082.48	PASS	AC=1;AF=0.7;AN=2;DP=2108;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:582,0,1197:10,20,5,16
chr1	63872876	.	G	A	785.99	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=2.651;FractionInformativeReads=1;MQ=60;MQRankSum=-1.464;QD=15.41;ReadPosRankSum=-1.981;SOR=0.374;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,30:51:99:814,0,781:5,16,10,20
chr1	63876686	.	T	C	156.44	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.219;QD=17.38;ReadPosRankSum=0.361;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:185,0,136:4,0,5,0
chr1	63877000	.	G	T	539.56	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.697;QD=18.61;ReadPosRankSum=0.966;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:568,0,324:2,9,3,15
chr1	63881552	.	C	T	531.09	PASS	AC=1;AF=0.768;AN=2;DP=2300;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:697,0,674:17,9,17,14
chr1	63885222	.	T	G	37.42	PASS	AC=1;AF=0.591;AN=2;DP=62;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant16-variant17-variant19-variant24-variant29-variant31-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:193,0,113:0,3,0,5
chr1	63903452	.	T	C	617.54	PASS	AC=1;AF=0.7;AN=2;DP=1654;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,32:68:99:695,0,934:16,20,14,18
chr1	63903846	.	A	AT	5045.9	PASS	AC=1;AF=0.529;AN=2;DP=5330;MQ=60;set=variant-variant2-variant7-variant9-variant16-variant17-variant18-variant19-variant23-variant24-variant28-variant29-variant31-variant33-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:147,99:246:99:2937,0,4730:74,73,50,49
chr1	63904294	.	T	C	756.89	PASS	AC=1;AF=0.775;AN=2;DP=880;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:139,0,312:3,8,3,4
chr1	63906371	.	A	G	947.84	PASS	AC=1;AF=0.559;AN=2;DP=819;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant9-variant16-variant17-variant18-variant19-variant23-variant24-variant28-variant29-variant31-variant33-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:801,0,759:20,8,22,3
chr1	63920515	.	C	G	378.18	PASS	AC=1;AF=0.529;AN=2;DP=556;MQ=60;set=variant-variant3-variant4-variant8-variant15-variant20-variant25-variant26-variant29-variant30-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:339,0,432:6,6,9,4
chr1	63975830	.	T	C	112.45	PASS	AC=2;AF=1;AN=2;DP=196;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:144,15,0:0,0,2,3
chr1	63988904	.	G	A	708.41	PASS	AC=1;AF=0.568;AN=2;DP=1347;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant12-variant13-variant14-variant15-variant20-variant22-variant25-variant26-variant29-variant30-variant32-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,38:69:99:989,0,808:17,14,19,19
chr1	63991140	.	T	C	282.97	PASS	AC=2;AF=1;AN=2;DP=687;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:592,48,0:0,0,13,3
chr1	63991267	.	T	C	1252.17	PASS	AC=1;AF=0.667;AN=2;DP=2086;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant32-variant34-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,25:63:99:509,0,958:19,19,13,12
chr1	63999087	.	T	C	590.81	PASS	AC=1;AF=0.667;AN=2;DP=647;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant32-variant34-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:594,0,526:14,5,17,5
chr1	64014705	.	C	G	332.1	PASS	AC=1;AF=0.667;AN=2;DP=687;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant32-variant34-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:193,0,376:6,6,3,4
chr1	64015217	.	G	A	263.57	PASS	AC=1;AF=0.714;AN=2;DP=1114;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:99:435,0,166:0,5,4,9
chr1	64017262	.	GA	G	132.72	PASS	AC=1;AF=0.733;AN=2;DP=146;MQ=60;set=variant3-variant10-variant11-variant13-variant17-variant21-variant24-variant25-variant26-variant27-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:91:112,0,91:4,1,3,2
chr1	64095493	.	T	C	350.38	PASS	AC=1;AF=0.5;AN=2;DP=107;FractionInformativeReads=1;MQ=60;set=variant18-variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:290,0,764:16,5,8,1
chr1	64095836	.	G	C	455.96	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.019;QD=14.25;ReadPosRankSum=-0.773;SOR=1.034;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:484,0,453:4,12,3,13
chr1	64097432	.	C	T	1155.48	PASS	AC=1;AF=0.575;AN=2;DP=2387;MQ=60;set=variant2-variant3-variant7-variant8-variant10-variant13-variant15-variant18-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,48:114:99:1060,0,1652:36,30,27,21
chr1	64100478	.	A	T	845.11	PASS	AC=2;AF=0.625;AN=2;DP=2012;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant18-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1912,183,0:0,0,36,25
chr1	64102114	.	A	G	720.07	PASS	AC=2;AF=0.62;AN=2;DP=928;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant18-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1132,90,0:0,0,5,25
chr1	64104630	.	GA	G	311.06	PASS	AC=1;AF=0.5;AN=2;DP=52;MQ=60;set=variant21-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:167,0,252:4,5,3,4
chr1	64114301	.	T	C	1240.81	PASS	AC=1;AF=0.577;AN=2;DP=1041;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant9-variant11-variant15-variant24-variant29-variant33-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,48:77:99:1398,0,812:9,20,18,30
chr1	64117537	.	G	T	465.08	PASS	AC=1;AF=0.577;AN=2;DP=786;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant9-variant11-variant15-variant24-variant29-variant33-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,39:64:99:1114,0,611:11,14,12,27
chr1	64124979	.	G	T	55.72	PASS	AC=1;AF=0.577;AN=2;DP=134;MQ=60;set=variant6-variant7-variant9-variant11-variant13-variant19-variant24-variant26-variant29-variant33-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:319,0,145:3,2,3,6
chr1	64125072	.	T	C	283.46	PASS	AC=1;AF=0.563;AN=2;DP=532;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant9-variant11-variant13-variant14-variant18-variant19-variant24-variant26-variant29-variant33-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:433,0,251:8,2,8,6
chr1	64125234	.	G	T	1753.25	PASS	AC=1;AF=0.567;AN=2;DP=2326;MQ=60;set=variant2-variant6-variant7-variant9-variant11-variant13-variant18-variant19-variant24-variant26-variant29-variant33-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,84:161:99:2007,0,2037:49,28,48,36
chr1	64125368	.	C	T	1706.2	PASS	AC=1;AF=0.583;AN=2;DP=2083;MQ=60;set=variant2-variant6-variant7-variant9-variant11-variant24-variant26-variant29-variant33-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:96,85:181:99:2056,0,2597:45,51,38,47
chr1	64125439	.	A	C	1393.89	PASS	AC=1;AF=0.583;AN=2;DP=1756;MQ=60;set=variant2-variant6-variant7-variant9-variant11-variant24-variant26-variant29-variant33-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,64:142:99:1574,0,1969:31,47,24,40
chr1	64125544	.	C	T	726.74	PASS	AC=1;AF=0.55;AN=2;DP=706;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant16-variant28-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:807,0,781:14,15,12,20
chr1	64240065	.	G	A	674.88	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=1.378;FractionInformativeReads=1;MQ=60;MQRankSum=0.707;QD=17.76;ReadPosRankSum=0.298;SOR=0.437;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,26:38:99:703,0,237:4,8,11,15
chr1	64240240	.	C	T	39.43	PASS	AC=1;AF=0.611;AN=2;DP=58;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant25-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:83:249,0,83:1,3,3,6
chr1	64474804	.	C	T	223.35	PASS	AC=1;AF=0.795;AN=2;DP=1087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:342,0,283:8,6,9,6
chr1	64475068	.	AG	A	1223.15	PASS	AC=1;AF=0.5;AN=2;DP=97;FS=1.658;FractionInformativeReads=0.99;MQ=60;MQRankSum=-2.122;QD=12.61;ReadPosRankSum=0.83;SOR=0.573;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,45:96:99:1260,0,1950:23,28,23,22
chr1	64475076	.	C	T	1066.47	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=5.235;FractionInformativeReads=0.979;MQ=60;MQRankSum=2.409;QD=11.23;ReadPosRankSum=-1.256;SOR=1.251;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,47:93:99:1095,0,1753:23,23,18,29
chr1	64515379	.	C	T	1054.04	PASS	AC=2;AF=0.852;AN=2;DP=5028;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3801,351,0:0,0,68,49
chr1	64608329	.	G	T	4896.52	PASS	AC=2;AF=1;AN=2;DP=6544;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4161,421,0:0,0,72,69
chr1	64624612	.	G	A	1684.06	PASS	AC=2;AF=1;AN=2;DP=1797;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1448,123,0:0,0,33,8
chr1	64644707	.	GAAA	GA,GAA,G	556.75	PASS	AC=1,0,0;AF=0.195,0.402,0.024;AN=2;DP=3491;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:29:99:4,10,8,7
chr1	64671570	.	CA	C	150.32	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.466;QD=13.67;ReadPosRankSum=-0.143;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:188,0,164:0,5,1,5
chr1	64672526	.	G	A	318.78	PASS	AC=1;AF=0.5;AN=2;DP=118;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:545,0,818:19,15,12,12
chr1	64680682	.	C	G	1343.56	PASS	AC=2;AF=0.713;AN=2;DP=1142;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:678,63,0:0,0,6,15
chr1	64698411	.	T	C	873.2	PASS	AC=1;AF=0.596;AN=2;DP=1022;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:859,0,526:3,14,8,20
chr1	64707243	.	G	C	61.77	PASS	AC=2;AF=0.817;AN=2;DP=170;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:109,9,0:0,0,3,0
chr1	64709891	.	A	G	2375.31	PASS	AC=1;AF=0.56;AN=2;DP=8453;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant32-variant33-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:166,146:312:99:3344,0,3788:73,93,65,81
chr1	64726149	.	C	CTCAG	242.08	PASS	AC=1;AF=0.568;AN=2;DP=207;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant25-variant27-variant28-variant32-variant33-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:262,0,262:5,0,5,0
chr1	64726414	.	A	C	1725.72	PASS	AC=1;AF=0.713;AN=2;DP=2078;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,12:37:99:285,0,758:6,19,3,9
chr1	64732733	.	G	A	176.88	PASS	AC=1;AF=0.5;AN=2;DP=48;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:322,0,427:11,5,8,2
chr1	65016349	.	A	T	4099.04	PASS	AC=1;AF=0.909;AN=2;DP=6412;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:75,60:135:99:1380,0,1947:40,35,34,26
chr1	65016399	.	G	A	2554.2	PASS	AC=1;AF=0.583;AN=2;DP=905;MQ=60;set=variant3-variant6-variant11-variant21-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,56:126:99:1313,0,1838:32,38,25,31
chr1	65045602	.	TA	T	607.22	PASS	AC=2;AF=0.909;AN=2;DP=2978;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,72:74:99:1923,168,0:1,1,42,30
chr1	65068638	.	T	C	2624.45	PASS	AC=2;AF=0.989;AN=2;DP=3311;MQ=60;MQRankSum=0.347;ReadPosRankSum=0.962;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1712,168,0:0,0,19,37
chr1	65068669	.	AT	A	270.71	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=1.862;FractionInformativeReads=0.853;MQ=60;MQRankSum=0.196;QD=7.96;ReadPosRankSum=0.676;SOR=1.449;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:308,0,330:4,11,2,12
chr1	65095054	.	G	A	1710.53	PASS	AC=1;AF=0.5;AN=2;DP=771;MQ=60;set=variant6-variant13-variant21-variant25-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,50:112:99:1292,0,1603:29,33,30,20
chr1	65099699	.	TG	T	348.42	PASS	AC=1;AF=0.5;AN=2;DP=269;set=variant3-variant6-variant13-variant21-variant25-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,13:37:99:224,0,616:15,9,8,5
chr1	65099978	.	G	A	1577.56	PASS	AC=1;AF=0.977;AN=2;DP=2195;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,29:51:99:807,0,569:7,15,9,20
chr1	65100057	.	G	GTATT	142.73	PASS	AC=2;AF=0.963;AN=2;DP=277;FS=0;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant25-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:134,9,0:0,0,0,3
chr1	65100061	.	G	T	152.28	PASS	AC=2;AF=0.973;AN=2;DP=340;FS=0;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:134,9,0:0,0,0,3
chr1	65107372	.	C	T	722.84	PASS	AC=2;AF=1;AN=2;DP=1222;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:739,63,0:0,0,13,8
chr1	65107850	.	T	C	743.47	PASS	AC=2;AF=1;AN=2;DP=892;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.085;ReadPosRankSum=-0.217;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:714,66,0:0,0,6,16
chr1	65113351	.	T	C	498.48	PASS	AC=2;AF=1;AN=2;DP=767;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:726,57,0:0,0,16,3
chr1	65113568	.	T	C	3538.45	PASS	AC=2;AF=1;AN=2;DP=6428;FS=0;MQ=60;MQRankSum=1.35;ReadPosRankSum=1.183;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4509,438,0:0,0,76,70
chr1	65138787	.	G	GA	508.41	PASS	AC=1;AF=0.529;AN=2;DP=660;MQ=60;set=variant3-variant5-variant6-variant8-variant11-variant13-variant16-variant18-variant21-variant25-variant28-variant29-variant31-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:306,0,350:15,3,12,3
chr1	65141676	.	TTAATAATAATAATAATAATAA	T,TTAATAATAATAATAA,TTAATAA,TTAATAATAA	213.61	PASS	AC=1,0,0,0;AF=0.5,0.091,0.182,0.091;AN=2;DP=183;FS=0;MQ=60;set=variant6-variant12-variant13-variant19-variant22-variant28-variant29-variant31-variant34-variant37-variant41	GT:DP:GQ:SB	0/1:7:85:1,2,2,2
chr1	65144191	.	G	C	632.3	PASS	AC=2;AF=0.583;AN=2;DP=696;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant13-variant16-variant18-variant21-variant25-variant28-variant29-variant31-variant34-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1063,113,0:0,0,17,21
chr1	65147224	.	GTTTTTTTTTTT	GT,GTTTTTTTTT,GTTTTTTT,G,GTTTTTTTT,GGTTTTTTTTTTTTTTTTTT,GTTTTTTTTTT,GGTTTTTTTTTTTTT	209.9	PASS	AC=0,0,0,1,0,0,0,0;AF=0.217,0.196,0.043,0.043,0.022,0.022,0.043,0.022;AN=2;DP=312;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant20-variant21-variant24-variant25-filterInvariant26-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/4:6:73:0,4,0,2
chr1	65156862	.	T	C	1987.02	PASS	AC=1;AF=0.538;AN=2;DP=1091;MQ=60;set=variant7-variant9-variant10-variant12-variant19-variant24-variant26-variant33-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,39:81:99:947,0,1006:26,16,22,17
chr1	65158105	.	T	C	8695.96	PASS	AC=1;AF=0.538;AN=2;DP=3450;set=variant7-variant9-variant10-variant12-variant19-variant24-variant26-variant33-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:111,130:241:99:3505,0,2792:57,54,61,69
chr1	65158724	.	C	T	10864.3	PASS	AC=2;AF=0.905;AN=2;DP=13252;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,299:299:99:9097,896,0:0,0,133,166
chr1	65210770	.	C	T	219.86	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.366;QD=8.14;ReadPosRankSum=-0.122;SOR=0.627;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:248,0,353:6,9,5,7
chr1	65211158	.	C	A	293	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=1.377;FractionInformativeReads=1;MQ=60;MQRankSum=-1.183;QD=8.37;ReadPosRankSum=-0.65;SOR=1.204;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:321,0,483:9,11,5,10
chr1	65247394	.	T	C	54.27	PASS	AC=1;AF=0.6;AN=2;DP=72;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant10-variant14-variant26-variant33-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,9:11:58:325,0,58:0,2,1,8
chr1	65255018	.	G	A	1743.72	PASS	AC=1;AF=0.605;AN=2;DP=1037;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant26-variant28-variant29-variant33-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,29:66:99:914,0,1110:31,6,25,4
chr1	65278334	.	T	G	201.9	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.831;QD=16.82;ReadPosRankSum=0.38;SOR=0.293;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:230,0,180:5,0,6,1
chr1	65297240	.	A	G	2540.25	PASS	AC=1;AF=0.58;AN=2;DP=2021;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant19-variant24-variant26-variant27-variant28-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,44:82:99:1312,0,975:19,19,17,27
chr1	65297855	.	CTAT	C	20179.8	PASS	AC=1;AF=0.654;AN=2;DP=10868;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant24-variant26-variant28-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:213,196:409:99:7559,0,9783:99,114,96,100
chr1	65297983	.	A	T	12601.7	PASS	AC=1;AF=0.587;AN=2;DP=7662;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant19-variant24-variant26-variant28-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,162:310:99:4328,0,3569:71,77,79,83
chr1	65298044	.	G	GAA	5922.6	PASS	AC=1;AF=0.5;AN=2;DP=318;FS=6.689;FractionInformativeReads=0.984;MQ=60;MQRankSum=-0.795;QD=18.62;ReadPosRankSum=-0.941;SOR=0.65;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:159,154:313:99:5960,0,6195:87,72,73,81
chr1	65298623	.	AAGTC	A	2823.35	PASS	AC=1;AF=0.654;AN=2;DP=1756;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant24-variant26-variant28-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,43:71:99:1696,0,1216:10,18,23,20
chr1	65298791	.	A	T	6021.96	PASS	AC=1;AF=0.587;AN=2;DP=4771;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant19-variant24-variant26-variant28-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,96:193:99:2505,0,2124:52,45,51,45
chr1	65299551	.	G	GAATT	813.01	PASS	AC=1;AF=0.58;AN=2;DP=1040;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant19-variant24-variant26-variant27-variant28-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,21:50:99:774,0,1643:13,16,11,10
chr1	65299673	.	T	TTAAG	778.2	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=1.131;FractionInformativeReads=0.942;MQ=60;MQRankSum=0.295;QD=14.97;ReadPosRankSum=0.681;SOR=1.042;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,20:49:99:815,0,1598:15,14,12,8
chr1	65301669	.	C	A	419.74	PASS	AC=1;AF=0.587;AN=2;DP=510;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant19-variant24-variant26-variant28-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:249,0,481:12,2,7,0
chr1	65305194	.	G	A	667.19	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.785;QD=17.11;ReadPosRankSum=0.1;SOR=0.91;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:695,0,467:12,4,18,5
chr1	65310489	.	T	C	1508.24	PASS	AC=1;AF=0.531;AN=2;DP=2347;MQ=60;set=variant2-variant7-variant9-variant10-variant13-variant14-variant19-variant24-variant26-variant32-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,72:130:99:1701,0,1291:34,24,40,32
chr1	65311116	.	G	C	667.51	PASS	AC=1;AF=0.531;AN=2;DP=535;MQ=60;set=variant2-variant7-variant9-variant10-variant13-variant14-variant19-variant24-variant26-variant32-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:347,0,1265:14,7,7,2
chr1	65311117	.	C	T	667.51	PASS	AC=1;AF=0.531;AN=2;DP=543;MQ=60;set=variant2-variant7-variant9-variant10-variant13-variant14-variant19-variant24-variant26-variant32-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,10:31:99:347,0,1265:14,7,8,2
chr1	65316675	.	G	A	517.12	PASS	AC=1;AF=0.531;AN=2;DP=814;MQ=60;set=variant2-variant7-variant9-variant10-variant13-variant14-variant19-variant24-variant26-variant32-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:476,0,623:8,15,7,14
chr1	65321388	.	G	A	1812.12	PASS	AC=1;AF=0.6;AN=2;DP=2433;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant24-variant26-variant32-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,50:125:99:1075,0,1869:34,41,19,31
chr1	65325970	.	C	T	1758.63	PASS	AC=1;AF=0.6;AN=2;DP=2745;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant24-variant26-variant32-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,62:138:99:1440,0,1639:34,42,21,41
chr1	65326098	.	CATGCATTTATTT	CATTT,C	154.74	PASS	AC=0,1;AF=0.5,0.167;AN=2;DP=50;FS=0;MQ=60;set=variant11-variant15-variant41	GT:DP:GQ:SB	0/2:13:99:0,8,0,5
chr1	65330682	.	G	A	862.18	PASS	AC=1;AF=0.6;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant32-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:280,0,131:0,4,1,7
chr1	65523519	.	A	G	673.4	PASS	AC=1;AF=0.571;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant28-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,6:26:99:192,0,564:6,14,0,6
chr1	65614260	.	C	T	2355.36	PASS	AC=1;AF=0.5;AN=2;DP=2091;set=variant3-variant4-variant12-variant13-variant14-variant17-variant21-variant23-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,147:256:99:3110,0,2402:51,58,69,78
chr1	65656166	.	T	C	1663.63	PASS	AC=1;AF=0.5;AN=2;DP=176;FractionInformativeReads=1;MQ=60;set=variant10-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,35:60:99:1250,0,752:21,4,34,1
chr1	65690461	.	G	A	343.43	PASS	AC=1;AF=0.611;AN=2;DP=412;FractionInformativeReads=1;set=variant-variant3-variant6-variant7-variant8-variant9-variant11-variant12-variant18-variant19-variant22-variant24-variant26-variant33-variant34-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:296,0,303:8,2,8,1
chr1	65694404	.	GTT	GT,G	5488.65	PASS	AC=1,0;AF=0.643,0.054;AN=2;DP=12038;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:383:99:87,82,116,98
chr1	65694819	.	G	A	904.5	PASS	AC=1;AF=0.65;AN=2;DP=1706;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant17-variant19-variant24-variant26-variant33-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,35:85:99:847,0,1280:22,28,13,22
chr1	65695853	.	A	G	824.63	PASS	AC=1;AF=0.696;AN=2;DP=2427;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,49:87:99:1153,0,916:19,19,24,25
chr1	65695930	.	G	A	1229.97	PASS	AC=1;AF=0.696;AN=2;DP=2474;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,50:96:99:1464,0,1208:26,20,30,20
chr1	65696034	.	G	C	4104.74	PASS	AC=1;AF=0.643;AN=2;DP=5322;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant17-variant19-variant24-variant25-variant26-variant33-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:128,123:251:99:3220,0,3200:73,55,79,44
chr1	65775187	.	G	C	117.67	PASS	AC=2;AF=1;AN=2;DP=630;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:352,39,0:0,0,7,6
chr1	65830608	.	T	C	1135.18	PASS	AC=2;AF=0.738;AN=2;DP=1177;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1254,111,0:0,0,9,28
chr1	65844963	.	A	G	3118.07	PASS	AC=2;AF=0.695;AN=2;DP=3706;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2955,279,0:0,0,58,35
chr1	65852310	.	A	G	117.98	PASS	AC=2;AF=0.629;AN=2;DP=447;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:452,36,0:0,0,9,3
chr1	65852870	.	A	G	342.51	PASS	AC=2;AF=0.7;AN=2;DP=689;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:595,54,0:0,0,5,13
chr1	65858088	.	T	C	1238.8	PASS	AC=2;AF=0.683;AN=2;DP=2092;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1572,150,0:0,0,33,17
chr1	65858145	.	G	A	1536.71	PASS	AC=2;AF=0.659;AN=2;DP=2934;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,71:72:99:2170,206,0:1,0,40,31
chr1	65860513	.	G	A	107.46	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=5.842;FractionInformativeReads=1;MQ=60;MQRankSum=-1.634;QD=6.32;ReadPosRankSum=-0.369;SOR=2.494;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:99:136,0,317:8,4,5,0
chr1	65860687	.	A	C	3426.11	PASS	AC=2;AF=0.72;AN=2;DP=5235;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3367,363,0:0,0,60,62
chr1	65867391	.	C	G	1839.87	PASS	AC=2;AF=0.707;AN=2;DP=2812;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2355,219,0:0,0,43,30
chr1	65874626	.	A	AT	96.3	PASS	AC=1;AF=0.587;AN=2;DP=450;MQ=60;set=variant-variant4-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant19-variant20-variant22-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:108,0,138:1,5,0,5
chr1	65881132	.	AAC	AACACAC,AACACACAC,A,AACAC	1833.54	PASS	AC=0,0,0,1;AF=0.274,0.119,0.071,0.226;AN=2;DP=3478;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:58:99:14,21,10,13
chr1	65897869	.	G	A	2912.91	PASS	AC=1;AF=0.5;AN=2;DP=2724;MQ=60;set=variant6-variant8-variant13-variant14-variant19-variant24-variant25-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:116,112:228:99:2792,0,3132:46,70,42,70
chr1	65897981	.	G	A	1049.13	PASS	AC=1;AF=0.604;AN=2;DP=1826;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,39:62:99:1193,0,643:4,19,11,28
chr1	65898249	.	TAA	TAAA,T,TA	106.44	PASS	AC=0,1,0;AF=0.167,0.372,0.09;AN=2;DP=1901;set=variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/2:53:99:9,7,29,8
chr1	65898873	.	G	C	899.83	PASS	AC=1;AF=0.604;AN=2;DP=1023;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:496,0,629:6,15,3,13
chr1	65898972	.	G	A	2487.06	PASS	AC=2;AF=1;AN=2;DP=2593;FS=0;MQ=60;MQRankSum=-0.247;ReadPosRankSum=0.46;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2454,198,0:0,0,43,23
chr1	65899320	.	T	G	3767.54	PASS	AC=1;AF=0.5;AN=2;DP=3624;MQ=60;set=variant6-variant8-variant13-variant14-variant19-variant24-variant25-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:169,167:336:99:4207,0,4187:63,106,60,107
chr1	65900357	.	G	T	942.38	PASS	AC=1;AF=0.604;AN=2;DP=1806;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,36:81:99:859,0,1172:23,22,19,17
chr1	65900690	.	G	T	539.24	PASS	AC=1;AF=0.5;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant11-variant16-variant30-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:420,0,631:7,14,7,9
chr1	65901053	.	T	TC	225.13	PASS	AC=1;AF=0.5;AN=2;DP=2609;set=filterInvariant3-filterInvariant5-variant7-variant9-variant11-filterInvariant14-variant15-variant16-variant17-variant18-filterInvariant19-variant21-variant23-variant24-filterInvariant25-filterInvariant27-variant28-variant31-variant33-variant35-filterInvariant36-filterInvariant37-filterInvariant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,28:70:99:543,0,1109:18,24,10,18
chr1	65901119	.	T	C	620.05	PASS	AC=2;AF=0.805;AN=2;DP=761;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:933,69,0:0,0,3,20
chr1	66036501	.	G	T	1489.78	PASS	AC=2;AF=1;AN=2;DP=1607;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1051,84,0:0,0,6,22
chr1	66037984	.	T	G	277.55	PASS	AC=1;AF=0.5;AN=2;DP=747;set=variant4-variant7-variant9-variant12-variant17-variant19-variant20-variant23-variant25-variant26-variant28-variant32-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:317,0,437:4,13,6,12
chr1	66058513	.	A	G	3140.39	PASS	AC=2;AF=0.696;AN=2;DP=3659;MQ=60;set=variant-variant3-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant29-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2898,297,0:0,0,42,57
chr1	66064293	.	A	C	346.09	PASS	AC=2;AF=0.659;AN=2;DP=621;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant27-variant31-variant32-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:912,93,0:0,0,20,11
chr1	66067109	.	T	C	2723.92	PASS	AC=2;AF=0.647;AN=2;DP=946;MQ=60;set=variant3-variant6-variant10-variant11-variant15-variant17-variant18-variant19-variant21-variant24-variant27-variant31-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1906,183,0:0,0,35,26
chr1	66081664	.	A	G	1023.88	PASS	AC=1;AF=0.5;AN=2;DP=197;FractionInformativeReads=1;MQ=60;set=variant18-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,25:55:99:770,0,899:21,9,21,4
chr1	66085574	.	T	A	764.83	PASS	AC=2;AF=0.563;AN=2;DP=975;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1298,120,0:0,0,27,13
chr1	66087156	.	G	C	1099.82	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.447;QD=10.28;ReadPosRankSum=-0.141;SOR=0.701;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,49:107:99:1128,0,1371:25,33,21,28
chr1	66087301	.	G	C	572.17	PASS	AC=2;AF=0.563;AN=2;DP=326;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:418,36,0:0,0,3,9
chr1	66088701	.	C	A	686.16	PASS	AC=2;AF=0.563;AN=2;DP=1330;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1188,111,0:0,0,12,25
chr1	66092017	.	T	A	85.5	PASS	AC=2;AF=0.565;AN=2;DP=252;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:589,42,0:0,0,1,13
chr1	66092018	.	A	G	304.68	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=0;FractionInformativeReads=1;MQ=60;set=variant18-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:166,0,322:1,8,0,5
chr1	66096093	.	T	TA,TAA	147.06	PASS	AC=1,0;AF=0.333,0.2;AN=2;DP=311;set=variant2-variant4-variant9-filterInvariant11-variant12-variant17-variant20-variant22-filterInvariant24-variant25-variant28-variant31-variant32-variant35-variant41	GT:DP:GQ:SB	0/1:8:20:1,1,6,0
chr1	66096106	.	G	A	83.07	PASS	AC=1;AF=0.773;AN=2;DP=1505;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:0,16:16:3:578,0,3:0,0,9,7
chr1	66096110	.	G	GA	288.4	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;set=variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,17:19:0:604,0,0:1,1,10,7
chr1	66099438	.	C	G	5913.8	PASS	AC=2;AF=0.556;AN=2;DP=7076;MQ=60;set=variant4-variant6-variant7-variant9-variant12-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,396:396:99:11921,1183,0:0,0,172,224
chr1	66099831	.	C	T	2679.51	PASS	AC=2;AF=0.565;AN=2;DP=4587;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,170:172:99:5214,465,0:1,1,83,87
chr1	66100322	.	G	T	3550.91	PASS	AC=2;AF=0.667;AN=2;DP=1033;FS=0;MQ=60;set=variant18-variant24-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,247:248:99:7319,733,0:1,0,115,132
chr1	66100450	.	G	A	1649.82	PASS	AC=2;AF=0.565;AN=2;DP=2148;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2459,198,0:0,0,22,44
chr1	66102257	.	G	A	1256.14	PASS	AC=2;AF=0.565;AN=2;DP=1553;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1686,167,0:0,0,26,30
chr1	66102755	.	A	ATTACT	3129.24	PASS	AC=2;AF=0.556;AN=2;DP=3164;MQ=60;set=variant4-variant6-variant7-variant9-variant12-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:6680,452,0:0,0,85,58
chr1	66103042	.	AAC	A,AACAC	5397.55	PASS	AC=2,0;AF=0.438,0.175;AN=2;DP=15102;MQ=60;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-filterInvariant35-variant36-variant37-filterInvariant38-variant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:378:99:0,0,182,196
chr1	66105371	.	C	T	2055.93	PASS	AC=2;AF=0.667;AN=2;DP=784;FractionInformativeReads=1;MQ=60;set=variant18-variant24-variant41	GT:AD:DP:GQ:PL:SB	1/1:2,227:229:99:7373,638,0:1,1,116,111
chr1	66105512	.	A	G	5399.9	PASS	AC=2;AF=0.565;AN=2;DP=9267;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,318:318:99:9266,951,0:0,0,150,168
chr1	66105688	.	A	G	4071.94	PASS	AC=2;AF=0.556;AN=2;DP=2898;MQ=60;set=variant4-variant6-variant7-variant9-variant12-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4391,428,0:0,0,64,79
chr1	66105702	.	C	T	3875.1	PASS	AC=2;AF=0.556;AN=2;DP=2828;MQ=60;set=variant4-variant6-variant7-variant9-variant12-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4340,419,0:0,0,61,79
chr1	66105944	.	C	T	1749.4	PASS	AC=2;AF=0.563;AN=2;DP=3449;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4281,402,0:0,0,75,59
chr1	66106447	.	CT	C,CTT,CTTT	526.92	PASS	AC=0,0,1;AF=0.326,0.151,0.035;AN=2;DP=6329;set=variant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant29-variant30-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/3:55:61:0,9,13,33
chr1	66106469	.	A	G	1025.33	PASS	AC=2;AF=0.565;AN=2;DP=1530;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:2132,147,0:0,0,3,44
chr1	66618271	.	ATG	ATGTG,A	245.61	PASS	AC=1,0;AF=0.333,0.167;AN=2;DP=80;MQ=60;set=variant17-variant37-variant41	GT:DP:GQ:SB	0/1:18:99:2,10,1,5
chr1	66732529	.	A	T	1264.81	PASS	AC=1;AF=0.721;AN=2;DP=1389;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,20:37:99:566,0,367:6,11,5,15
chr1	66821160	.	A	G	353.24	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=1.27;FractionInformativeReads=1;MQ=60;MQRankSum=0.997;QD=8.41;ReadPosRankSum=-2.085;SOR=0.984;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:381,0,643:16,10,11,5
chr1	66829262	.	A	G	2454.52	PASS	AC=2;AF=0.802;AN=2;DP=3324;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2324,207,0:0,0,23,46
chr1	67091686	.	G	A	271.06	PASS	AC=1;AF=0.5;AN=2;DP=93;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:387,0,396:0,11,2,10
chr1	67098664	.	G	A	692.36	PASS	AC=1;AF=0.5;AN=2;DP=877;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant15-variant21-variant27-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:930,0,733:17,16,19,14
chr1	67101802	.	A	G	238.66	PASS	AC=1;AF=0.648;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant15-variant16-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:506,0,242:1,6,0,13
chr1	67109410	.	T	TTGTG	2654.94	PASS	AC=1;AF=0.5;AN=2;DP=1800;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant15-variant21-variant27-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:65,67:132:99:2576,0,2962:30,35,28,39
chr1	67109479	.	A	G	810.29	PASS	AC=1;AF=0.5;AN=2;DP=888;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant15-variant21-variant27-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,38:89:99:882,0,1429:15,36,12,26
chr1	67125899	.	A	G	455.91	PASS	AC=1;AF=0.545;AN=2;DP=226;set=variant2-variant3-variant4-variant6-variant15-variant21-variant27-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,9:11:54:394,0,54:2,0,9,0
chr1	67125932	.	G	A,GAGGA	1233.8	PASS	AC=1,1;AF=0.367,0.233;AN=2;DP=627;set=variant3-variant4-variant5-variant10-variant11-variant15-variant21-variant26-variant27-variant29-variant33-variant36-variant39-variant2-variant41	GT:DP:GQ:SB	1/2:19:99:0,0,19,0
chr1	67126114	.	A	G	2348.76	PASS	AC=1;AF=0.654;AN=2;DP=3447;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant22-variant23-variant24-variant25-variant26-variant28-variant32-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,58:117:99:1294,0,1572:24,35,28,30
chr1	67136610	.	G	T	507.33	PASS	AC=1;AF=0.5;AN=2;DP=699;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant15-variant21-variant27-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,26:71:99:630,0,1006:23,22,15,11
chr1	67142852	.	G	A	150.36	PASS	AC=1;AF=0.5;AN=2;DP=196;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant21-variant27-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:362,0,221:1,6,2,10
chr1	67145322	.	C	A	625.43	PASS	AC=2;AF=0.729;AN=2;DP=2471;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2161,206,0:0,0,44,25
chr1	67147691	.	A	G	1445.86	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=6.069;FractionInformativeReads=1;MQ=60;MQRankSum=0.983;QD=18.07;ReadPosRankSum=-1.458;SOR=0.582;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,52:80:99:1474,0,633:17,11,24,28
chr1	67149706	.	G	C	236.4	PASS	AC=1;AF=0.625;AN=2;DP=441;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant22-variant23-variant24-variant25-variant26-variant28-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:348,0,372:10,2,9,4
chr1	67155862	.	TCTC	T	2062.97	PASS	AC=1;AF=0.558;AN=2;DP=2668;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant29-variant32-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,55:112:99:2094,0,2814:29,28,33,22
chr1	67160336	.	A	G	2304.14	PASS	AC=1;AF=0.714;AN=2;DP=4608;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,73:129:99:2118,0,1438:31,25,37,36
chr1	67160548	.	T	C	2466.1	PASS	AC=1;AF=0.559;AN=2;DP=3266;MQ=60;set=variant-variant2-variant7-variant8-variant9-variant11-variant12-variant13-variant18-variant19-variant20-variant26-variant31-variant34-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:93,86:179:99:2249,0,2278:44,49,43,43
chr1	67160602	.	A	G	2478.75	PASS	AC=1;AF=0.625;AN=2;DP=5718;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,99:182:99:2771,0,2336:40,43,56,43
chr1	67160884	.	A	G	1607.12	PASS	AC=1;AF=0.593;AN=2;DP=2078;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,47:95:99:1413,0,1368:20,28,16,31
chr1	67160938	.	TA	TAAAA,TAAA,TAAAAAAAAAAAA,TAAAAAAAAAA,TAA,TAAAAAAAAA,T,TAAAAAAAAAAA,TAAAAAAAAAAAAAAAAA,TAAAAA,TAAAAAAAAAAAAA	502.94	PASS	AC=1,0,0,0,0,0,0,0,0,0,0;AF=0.135,0.162,0.014,0.041,0.054,0.014,0.068,0.081,0.014,0.041,0.014;AN=2;DP=2334;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-filterInvariant11-variant15-variant16-variant17-filterInvariant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:67:99:20,17,17,13
chr1	67160981	.	C	T	1023.44	PASS	AC=1;AF=0.593;AN=2;DP=2230;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,50:98:99:1370,0,1333:27,21,26,24
chr1	67194911	.	TTC	T	1643.61	PASS	AC=1;AF=0.556;AN=2;DP=2473;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant29-variant32-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,45:93:99:1552,0,1658:34,14,28,17
chr1	67195184	.	C	G	1874.2	PASS	AC=1;AF=0.638;AN=2;DP=2526;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:1553,0,2030:11,21,13,30
chr1	67195192	.	C	G	1772.24	PASS	AC=1;AF=0.638;AN=2;DP=2174;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,33:67:99:1378,0,2032:10,24,8,25
chr1	67209562	.	T	C	1954.14	PASS	AC=1;AF=0.643;AN=2;DP=5232;MQ=60;set=variant-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,78:177:99:1860,0,2361:50,49,39,39
chr1	67209818	.	A	G	1550.48	PASS	AC=2;AF=0.78;AN=2;DP=2141;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2021,159,0:0,0,42,11
chr1	67236097	.	A	T	3470.41	PASS	AC=1;AF=0.577;AN=2;DP=1722;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant14-variant15-variant17-variant18-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,59:120:99:1278,0,1354:33,28,30,29
chr1	67242087	.	G	A	2532.19	PASS	AC=1;AF=0.577;AN=2;DP=1226;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant14-variant15-variant17-variant18-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,40:71:99:1076,0,673:16,15,20,20
chr1	67242225	.	CAT	C	665.44	PASS	AC=1;AF=0.577;AN=2;DP=232;set=variant2-variant3-variant4-variant5-variant6-variant14-variant15-variant17-variant18-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:438,0,683:3,5,2,9
chr1	67242241	.	TGG	T	589.1	PASS	AC=1;AF=0.577;AN=2;DP=164;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant14-variant15-variant17-variant18-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:432,0,768:3,5,2,9
chr1	67242253	.	T	A	556.77	PASS	AC=1;AF=0.577;AN=2;DP=126;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant14-variant15-variant17-variant18-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:441,0,606:1,5,2,9
chr1	67242260	.	GTA	G	457.73	PASS	AC=1;AF=0.577;AN=2;DP=109;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant14-variant15-variant17-variant18-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:447,0,506:1,4,1,9
chr1	67244488	.	T	TA	595.21	PASS	AC=1;AF=0.633;AN=2;DP=1595;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant29-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:772,0,689:6,16,6,18
chr1	67266756	.	T	A	1175.39	PASS	AC=2;AF=0.919;AN=2;DP=3781;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2615,246,0:0,0,49,33
chr1	67288045	.	C	T	479.59	PASS	AC=1;AF=0.679;AN=2;DP=1965;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,36:60:99:913,0,537:12,12,23,13
chr1	67292473	.	A	AT	2212.73	PASS	AC=1;AF=0.735;AN=2;DP=1996;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,34:70:99:1312,0,2240:23,13,24,10
chr1	67292478	.	T	A	2246.46	PASS	AC=1;AF=0.735;AN=2;DP=2184;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,36:70:99:1359,0,2212:21,13,25,11
chr1	67303303	.	A	G	1207.32	PASS	AC=1;AF=0.613;AN=2;DP=2133;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,36:69:99:968,0,859:22,11,23,13
chr1	67359195	.	T	A	233.51	PASS	AC=1;AF=0.625;AN=2;DP=123;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant11-variant13-variant14-variant16-variant17-variant20-variant22-variant26-variant27-variant28-variant34-variant35-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:101,0,153:0,4,0,3
chr1	67370629	.	C	A	433.23	PASS	AC=1;AF=0.5;AN=2;DP=369;set=variant3-variant4-variant6-variant10-variant22-variant26-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:543,0,465:12,6,12,10
chr1	67372726	.	T	C	82.71	PASS	AC=1;AF=0.5;AN=2;DP=142;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant22-variant26-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:275,0,218:3,6,5,6
chr1	67390416	.	G	C	5783.18	PASS	AC=2;AF=0.833;AN=2;DP=10222;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,197:197:99:5730,589,0:0,0,94,103
chr1	67390468	.	C	G	5604.71	PASS	AC=2;AF=0.845;AN=2;DP=8734;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:5179,476,0:0,0,66,93
chr1	67390999	.	G	C	466.77	PASS	AC=2;AF=0.854;AN=2;DP=618;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:757,51,0:0,0,2,15
chr1	67391003	.	G	C	466.77	PASS	AC=2;AF=0.854;AN=2;DP=569;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:720,48,0:0,0,2,14
chr1	67394918	.	A	G	1785.8	PASS	AC=1;AF=0.5;AN=2;DP=523;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,40:88:99:907,0,1195:23,25,19,21
chr1	67396222	.	T	G	901.52	PASS	AC=2;AF=0.898;AN=2;DP=1047;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:883,60,0:0,0,0,20
chr1	67401623	.	ACT	A	1670.22	PASS	AC=1;AF=0.5;AN=2;DP=557;MQ=60;set=variant3-variant4-variant6-variant22-variant30-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,34:70:99:1299,0,3904:19,17,18,16
chr1	67401629	.	A	G	1673.19	PASS	AC=1;AF=0.5;AN=2;DP=553;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant22-variant30-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,33:70:99:1274,0,3953:19,18,17,16
chr1	67401630	.	A	C	1673.19	PASS	AC=1;AF=0.5;AN=2;DP=550;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant22-variant30-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:1274,0,3953:19,18,17,15
chr1	67412235	.	G	A	6702.24	PASS	AC=1;AF=0.5;AN=2;DP=3155;MQ=60;set=variant3-variant4-variant6-variant22-variant30-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:214,217:431:99:5893,0,5677:119,95,120,97
chr1	67412822	.	T	G	7497.27	PASS	AC=2;AF=0.845;AN=2;DP=8560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:5913,565,0:0,0,114,75
chr1	67412918	.	G	C	13448	PASS	AC=2;AF=0.845;AN=2;DP=14622;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,324:324:99:10345,971,0:0,0,172,152
chr1	67413478	.	A	G	1628.54	PASS	AC=2;AF=0.845;AN=2;DP=2778;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2176,204,0:0,0,34,34
chr1	67413721	.	A	G	1415.2	PASS	AC=1;AF=0.5;AN=2;DP=492;FractionInformativeReads=1;MQ=60;set=variant26-variant27-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,59:118:99:1444,0,1641:43,16,40,19
chr1	67423997	.	T	TTTCTC	52.73	PASS	AC=2;AF=0.894;AN=2;DP=213;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,0,4
chr1	67425311	.	T	G	768.38	PASS	AC=2;AF=0.845;AN=2;DP=1253;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1078,108,0:0,0,23,13
chr1	67425494	.	A	AT	279.83	PASS	AC=2;AF=0.878;AN=2;DP=495;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:397,45,0:0,0,4,11
chr1	67451518	.	TTTA	T	58.58	PASS	AC=1;AF=0.5;AN=2;DP=33;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:311,0,196:4,2,5,5
chr1	67452416	.	G	GT	4527.99	PASS	AC=1;AF=0.5;AN=2;DP=552;FS=0.556;FractionInformativeReads=0.98;MQ=60;MQRankSum=1.881;QD=8.2;ReadPosRankSum=0.243;SOR=0.632;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:366,175:541:99:4565,0,11434:172,194,85,90
chr1	67452723	.	C	A	6569.81	PASS	AC=1;AF=0.5;AN=2;DP=2417;FractionInformativeReads=1;set=variant-variant14-variant21-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:236,81:317:99:1734,0,6407:107,129,33,48
chr1	67453035	.	A	G	32552.5	PASS	AC=2;AF=0.966;AN=2;DP=22026;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,622:622:99:19188,1861,0:0,0,349,273
chr1	67453445	.	A	AAT	3524.68	PASS	AC=1;AF=0.5;AN=2;DP=1944;MQ=60;set=variant-variant3-variant4-variant6-variant22-variant30-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,71:164:99:2218,0,3048:55,38,40,31
chr1	67465988	.	A	T	107.51	PASS	AC=1;AF=0.545;AN=2;DP=175;set=variant4-variant15-variant22-variant23-variant24-variant26-variant31-variant33-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:17:112,0,17:3,0,6,2
chr1	67465989	.	A	T	183.29	PASS	AC=1;AF=0.5;AN=2;DP=60;set=variant4-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:72:225,0,72:3,2,8,3
chr1	67467486	.	G	A	862.42	PASS	AC=1;AF=0.5;AN=2;DP=304;FractionInformativeReads=1;set=variant3-variant4-variant6-variant22-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:566,0,589:9,12,10,9
chr1	67474880	.	T	C	330.5	PASS	AC=1;AF=0.5;AN=2;DP=167;MQ=60;set=variant-variant3-variant4-variant6-variant22-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:223,0,260:3,7,3,6
chr1	67487119	.	C	A	730.94	PASS	AC=1;AF=0.756;AN=2;DP=3589;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,40:84:99:985,0,1171:25,19,24,16
chr1	67487374	.	TCCAACACAGACACAGACACAGACA	TCAGACACAGACACAGACA,T	421.76	PASS	AC=1,0;AF=0.63,0.019;AN=2;DP=1401;set=variant2-filterInvariant3-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant26-variant27-variant28-filterInvariant31-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:51:99:8,14,11,18
chr1	67487393	.	CAGACACAGACACAG	CACACAGACACAG,C	85.98	PASS	AC=1,0;AF=0.591,0.023;AN=2;DP=1043;set=variant2-variant5-variant6-variant10-filterInvariant11-variant13-variant16-variant18-variant20-variant22-variant24-variant25-variant26-variant27-filterInvariant28-variant33-variant36-filterInvariant37-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:29:99:7,10,4,8
chr1	67487401	.	GACACAGAC	G,CACACAGAC	650.45	PASS	AC=1,0;AF=0.5,0.357;AN=2;DP=230;set=variant3-variant4-variant6-variant30-variant39-variant41-variant42	GT:DP:GQ:SB	0/1:31:99:8,14,2,7
chr1	67487407	.	G	C	531.73	PASS	AC=1;AF=0.8;AN=2;DP=1419;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:477,0,342:2,7,4,9
chr1	67512903	.	G	T	408.69	PASS	AC=1;AF=0.744;AN=2;DP=2484;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,22:54:99:581,0,804:20,12,15,7
chr1	67512920	.	A	C	537.22	PASS	AC=1;AF=0.744;AN=2;DP=2784;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,28:66:99:722,0,825:19,19,19,9
chr1	67516191	.	GA	G	344.76	PASS	AC=1;AF=0.5;AN=2;DP=320;MQ=60;set=variant3-variant4-variant6-variant10-variant22-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,22:34:99:528,0,241:3,9,11,11
chr1	67518420	.	T	A	385.01	PASS	AC=1;AF=0.5;AN=2;DP=271;MQ=60;set=variant3-variant4-variant6-variant22-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:319,0,650:16,5,9,3
chr1	67518534	.	C	T	805.09	PASS	AC=1;AF=0.5;AN=2;DP=815;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant22-variant23-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,39:75:99:948,0,900:16,20,23,16
chr1	67519435	.	C	A	496.99	PASS	AC=2;AF=0.6;AN=2;DP=615;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant22-variant23-variant30-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:783,66,0:0,0,15,7
chr1	67557966	.	G	T	569.92	PASS	AC=1;AF=0.793;AN=2;DP=2145;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:605,0,461:10,9,11,12
chr1	67558063	.	C	G	1515.86	PASS	AC=1;AF=0.744;AN=2;DP=1671;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,13:36:99:322,0,814:13,10,8,5
chr1	67558169	.	T	C	3586.91	PASS	AC=2;AF=0.86;AN=2;DP=4407;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2817,257,0:0,0,53,33
chr1	67558360	.	C	T	3143.35	PASS	AC=1;AF=0.5;AN=2;DP=2303;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant15-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:122,94:216:99:2331,0,3325:66,56,57,37
chr1	67558739	.	C	T	2802.81	PASS	AC=2;AF=0.86;AN=2;DP=3473;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2111,183,0:0,0,25,36
chr1	67560897	.	A	G	7471.05	PASS	AC=2;AF=0.86;AN=2;DP=7873;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:6164,549,0:0,0,86,97
chr1	67560956	.	C	T	7237.36	PASS	AC=2;AF=0.86;AN=2;DP=7745;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,180:180:99:5773,539,0:0,0,88,92
chr1	67561251	.	C	T	2219.97	PASS	AC=1;AF=0.571;AN=2;DP=1064;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant15-variant25-variant26-variant30-variant32-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,39:73:99:1054,0,892:11,23,12,27
chr1	67561311	.	T	A	529.28	PASS	AC=1;AF=0.5;AN=2;DP=522;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant15-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:873,0,712:9,19,13,17
chr1	67561540	.	T	C	679.14	PASS	AC=1;AF=0.5;AN=2;DP=577;FractionInformativeReads=1;set=variant2-variant5-variant7-variant8-variant10-variant23-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,39:67:99:1031,0,705:18,10,22,17
chr1	67561772	.	G	A	1970.67	PASS	AC=1;AF=0.5;AN=2;DP=1555;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant23-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:89,82:171:99:2005,0,2262:45,44,40,42
chr1	67562106	.	G	T	1111.7	PASS	AC=1;AF=0.744;AN=2;DP=891;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:94:94,0,332:3,8,1,3
chr1	67577367	.	A	T	647.1	PASS	AC=2;AF=0.798;AN=2;DP=3064;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2019,201,0:0,0,29,38
chr1	67579386	.	A	G	1248.24	PASS	AC=2;AF=0.86;AN=2;DP=2114;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1427,141,0:0,0,26,21
chr1	67591611	.	GAAA	GA,GAA,G	462.52	PASS	AC=0,1,0;AF=0.258,0.455,0.045;AN=2;DP=1226;set=variant-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:21:1:1,2,5,13
chr1	67591660	.	G	A	201.16	PASS	AC=2;AF=0.81;AN=2;DP=529;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:515,36,0:0,0,1,11
chr1	67600659	.	G	C	215.88	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1277;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:133,34:167:99:154,0,5457:23,110,34,0
chr1	67600665	.	A	C	355.42	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=5947;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:121,45:166:99:508,0,5213:13,108,45,0
chr1	67600669	.	T	C	415.78	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2101;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:130,25:155:99:118,0,5554:17,113,25,0
chr1	67600686	.	G	T	876.54	PASS	AC=1;AF=0.526;AN=2;DP=1949;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant32-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,57:111:99:2041,0,1968:4,50,0,57
chr1	67634991	.	AC	A	200.98	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;MQ=60;set=variant3-variant6-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:138,0,134:3,1,4,0
chr1	67648460	.	T	C	896.25	PASS	AC=2;AF=0.884;AN=2;DP=1113;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:510,45,0:0,0,10,5
chr1	67672567	.	CTTT	CTT,CT,CTTTT,C,CTTTTT	149.63	PASS	AC=0,0,1,0,0;AF=0.146,0.042,0.292,0.021,0.021;AN=2;DP=829;set=variant-variant2-filterInvariant4-variant6-variant9-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant19-filterInvariant20-variant23-filterInvariant24-variant25-variant26-variant28-filterInvariant31-variant33-variant39-variant41-variant42-filterInvariant44	GT:DP:GQ:SB	0/3:25:81:8,3,8,6
chr1	67685387	.	T	C	2488.87	PASS	AC=2;AF=0.875;AN=2;DP=2966;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1874,174,0:0,0,22,36
chr1	67685443	.	G	A	582.04	PASS	AC=2;AF=0.608;AN=2;DP=1402;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1049,90,0:0,0,10,20
chr1	67705726	.	A	G	2301.66	PASS	AC=2;AF=0.875;AN=2;DP=3236;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1703,162,0:0,0,28,26
chr1	67773649	.	T	C	805.42	PASS	AC=1;AF=0.661;AN=2;DP=546;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:140,0,214:3,5,3,4
chr1	67786088	.	A	G	859.08	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.631;QD=13.64;ReadPosRankSum=1.025;SOR=0.73;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:887,0,739:13,17,14,19
chr1	67787286	.	T	C	579.65	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.795;QD=9.99;ReadPosRankSum=-0.27;SOR=0.775;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,23:58:99:608,0,1037:22,13,15,8
chr1	67795319	.	T	C	4593.16	PASS	AC=2;AF=0.977;AN=2;DP=5714;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4191,426,0:0,0,67,75
chr1	67796641	.	ATTAAC	A	163.75	PASS	AC=1;AF=0.5;AN=2;DP=99;MQ=60;set=variant3-variant13-variant14-variant15-variant16-variant22-variant23-variant26-variant28-variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:69:69,0,134:0,2,0,2
chr1	67804336	.	A	T	651.76	PASS	AC=1;AF=0.5;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:951,0,866:19,17,23,13
chr1	67833501	.	G	A	721.05	PASS	AC=1;AF=0.5;AN=2;DP=187;MQ=60;set=variant13-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:776,0,930:23,14,19,16
chr1	67852141	.	A	G	1471.34	PASS	AC=1;AF=0.692;AN=2;DP=1216;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:406,0,610:16,1,11,1
chr1	67861090	.	C	T	191.42	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:367,0,372:10,3,10,3
chr1	67862248	.	T	C	285.1	PASS	AC=1;AF=0.5;AN=2;DP=72;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:471,0,588:10,12,7,11
chr1	67874252	.	CA	CAA,C	692.39	PASS	AC=0,1;AF=0.346,0.154;AN=2;DP=6373;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:110:99:27,28,32,23
chr1	67875102	.	ACCCC	ACC,A	37.95	PASS	AC=1,0;AF=0.517,0.017;AN=2;DP=1041;set=filterInvariant-filterInvariant2-variant3-variant4-filterInvariant5-variant6-variant8-variant9-variant10-variant11-filterInvariant12-variant13-filterInvariant15-variant17-variant18-variant19-variant20-variant24-variant26-variant28-variant29-variant30-variant31-filterInvariant35-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:18:99:7,0,7,4
chr1	67875104	.	C	A,CACACACA,CA	287.13	PASS	AC=1,0,0;AF=0.447,0.053,0.053;AN=2;DP=677;set=variant16-variant21-variant2-variant23-variant25-variant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-filterInvariant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:18:99:7,4,7,0
chr1	68151646	.	G	A	1074.17	PASS	AC=1;AF=0.5;AN=2;DP=92;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.047;QD=11.68;ReadPosRankSum=-0.914;SOR=0.633;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,45:92:99:1102,0,1420:32,15,30,15
chr1	68151980	.	T	G	1608.69	PASS	AC=1;AF=0.878;AN=2;DP=3000;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:891,0,792:22,7,22,6
chr1	68152363	.	G	A	349.91	PASS	AC=1;AF=0.767;AN=2;DP=621;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,8:28:99:221,0,748:1,19,0,8
chr1	68152388	.	T	C	385.6	PASS	AC=1;AF=0.814;AN=2;DP=483;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:185,0,266:0,8,0,6
chr1	68153553	.	G	T	568.53	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=3.734;FractionInformativeReads=0.983;MQ=60;MQRankSum=-0.458;QD=9.48;ReadPosRankSum=-2.494;SOR=0.336;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,23:59:99:597,0,971:23,13,12,11
chr1	68154086	.	G	C	731.07	PASS	AC=2;AF=0.819;AN=2;DP=1115;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:622,51,0:0,0,3,14
chr1	68167491	.	C	T	1702.85	PASS	AC=1;AF=0.734;AN=2;DP=3013;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,37:96:99:888,0,1736:24,35,14,23
chr1	68168543	.	T	C	3107.31	PASS	AC=1;AF=0.5;AN=2;DP=233;FS=0.48;FractionInformativeReads=1;MQ=60;MQRankSum=1.811;QD=13.34;ReadPosRankSum=-1.938;SOR=0.756;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:120,113:233:99:3136,0,3159:64,56,62,51
chr1	68169595	.	C	G	3923.77	PASS	AC=1;AF=0.5;AN=2;DP=328;FS=7.329;FractionInformativeReads=1;MQ=60;MQRankSum=3.774;QD=11.96;ReadPosRankSum=-1.517;SOR=0.924;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:173,155:328:99:3952,0,4354:89,84,68,87
chr1	68170010	.	T	A	310.37	PASS	AC=1;AF=0.5;AN=2;DP=84;FractionInformativeReads=1;MQ=60;set=variant17-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:413,0,176:4,4,9,6
chr1	68170069	.	T	C	421.3	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=4.593;FractionInformativeReads=1;MQ=60;MQRankSum=-1.135;QD=21.06;ReadPosRankSum=0.349;SOR=1.367;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,15:20:99:450,0,125:3,2,5,10
chr1	68170255	.	C	A	290.66	PASS	AC=1;AF=0.734;AN=2;DP=1178;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:497,0,818:20,3,13,5
chr1	68173264	.	C	T	2770.85	PASS	AC=1;AF=0.734;AN=2;DP=5722;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,77:155:99:1846,0,1905:36,42,38,39
chr1	68243104	.	TCAAA	T	3006.72	PASS	AC=1;AF=0.5;AN=2;DP=927;MQ=60;set=variant-variant10-variant12-variant17-variant30-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,62:128:99:2397,0,3882:38,28,36,26
chr1	68516183	.	A	G	204.91	PASS	AC=1;AF=0.5;AN=2;DP=35;FractionInformativeReads=1;MQ=60;set=variant-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:383,0,210:6,2,9,7
chr1	68516435	.	T	C	425.07	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:639,0,467:9,12,12,15
chr1	68517066	.	C	T	411.42	PASS	AC=2;AF=0.886;AN=2;DP=849;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:709,63,0:0,0,15,6
chr1	68517231	.	A	C	831.6	PASS	AC=1;AF=0.5;AN=2;DP=123;FractionInformativeReads=1;MQ=60;set=variant-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,26:60:99:621,0,844:16,18,11,15
chr1	68517283	.	G	A	738.15	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=2.182;FractionInformativeReads=0.983;MQ=60;MQRankSum=-1.621;QD=12.51;ReadPosRankSum=0.53;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:766,0,659:11,16,15,16
chr1	68591104	.	A	G	3804.97	PASS	AC=1;AF=0.779;AN=2;DP=10173;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,124:224:99:3047,0,2625:60,40,70,54
chr1	68591173	.	A	G	5592.93	PASS	AC=1;AF=0.767;AN=2;DP=14556;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,161:313:99:4039,0,3890:86,66,88,73
chr1	68591253	.	C	T	4090.83	PASS	AC=1;AF=0.578;AN=2;DP=13131;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:180,174:354:99:4237,0,4637:96,84,90,84
chr1	68591405	.	G	A	4623.36	PASS	AC=1;AF=0.791;AN=2;DP=12565;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,128:286:99:2959,0,3840:61,97,54,74
chr1	68593131	.	C	G	280.3	PASS	AC=1;AF=0.652;AN=2;DP=375;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:99:520,0,134:1,5,3,12
chr1	68603731	.	A	G	341.22	PASS	AC=1;AF=0.798;AN=2;DP=1292;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:551,0,540:4,13,4,15
chr1	68614013	.	A	G	1757.67	PASS	AC=2;AF=1;AN=2;DP=2127;FS=0;MQ=60;MQRankSum=1.354;ReadPosRankSum=1.669;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,54:55:99:1573,129,0:1,0,26,28
chr1	68614320	.	G	A	1210.75	PASS	AC=1;AF=0.5;AN=2;DP=621;FractionInformativeReads=1;MQ=60;set=variant6-variant11-variant12-variant20-variant30-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,35:73:99:987,0,1113:15,23,14,21
chr1	68620762	.	G	A	1024.13	PASS	AC=1;AF=0.63;AN=2;DP=2391;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:638,0,945:19,15,16,11
chr1	68652184	.	T	TA	335.75	PASS	AC=1;AF=0.5;AN=2;DP=537;MQ=60;set=variant-variant4-variant15-variant16-variant24-variant32-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:254,0,401:15,5,12,4
chr1	68697540	.	CGGGG	CGGG,C,CG	333.05	PASS	AC=0,0,1;AF=0.091,0.091,0.318;AN=2;DP=221;MQ=60;set=variant4-variant7-variant11-variant13-variant17-variant19-variant22-variant23-variant25-variant39-variant41	GT:DP:GQ:SB	0/3:7:81:3,1,3,0
chr1	68697553	.	G	C	116.61	PASS	AC=1;AF=0.583;AN=2;DP=157;MQ=60;set=variant3-variant4-variant13-variant16-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:61:61,0,223:6,4,0,5
chr1	68894544	.	G	C	565.66	PASS	AC=1;AF=0.614;AN=2;DP=526;MQ=60;set=variant-variant2-variant7-variant8-variant11-variant12-variant14-variant15-variant18-variant19-variant22-variant24-variant25-variant27-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:213,0,280:7,2,6,1
chr1	68894730	.	G	GCT	2029.26	PASS	AC=1;AF=0.636;AN=2;DP=1283;MQ=60;set=variant-variant2-variant7-variant8-variant11-variant12-variant14-variant15-variant18-variant19-variant22-variant24-variant25-variant27-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:465,0,966:11,13,7,7
chr1	68894779	.	C	T	431.92	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=6.036;FractionInformativeReads=1;MQ=60;MQRankSum=-0.691;QD=13.5;ReadPosRankSum=-1.305;SOR=1.954;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:460,0,565:12,7,11,2
chr1	68894848	.	C	T	2627.39	PASS	AC=1;AF=0.636;AN=2;DP=2083;MQ=60;set=variant-variant2-variant7-variant8-variant11-variant12-variant14-variant15-variant18-variant19-variant22-variant24-variant25-variant27-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:972,0,1115:25,15,22,17
chr1	68895118	.	A	G	3919.07	PASS	AC=1;AF=0.5;AN=2;DP=279;FS=0.435;FractionInformativeReads=1;MQ=60;MQRankSum=-0.278;QD=14.05;ReadPosRankSum=0.992;SOR=0.662;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:124,155:279:99:3947,0,3260:59,65,75,80
chr1	68896644	.	G	A	752.07	PASS	AC=1;AF=0.636;AN=2;DP=513;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant8-variant11-variant12-variant14-variant15-variant18-variant19-variant22-variant24-variant25-variant27-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:273,0,236:6,1,7,0
chr1	68897001	.	C	T	1231.58	PASS	AC=1;AF=0.5;AN=2;DP=139;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.122;QD=8.86;ReadPosRankSum=2.516;SOR=0.653;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:82,57:139:99:1260,0,2257:38,44,27,30
chr1	68903942	.	C	T	568.4	PASS	AC=1;AF=0.556;AN=2;DP=394;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant15-variant18-variant19-variant25-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:568,0,450:6,10,4,14
chr1	68904513	.	A	G	254.6	PASS	AC=1;AF=0.563;AN=2;DP=156;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant18-variant19-variant25-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:382,0,309:7,3,7,3
chr1	68905358	.	G	C	1100.97	PASS	AC=1;AF=0.62;AN=2;DP=1177;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,25:40:99:601,0,363:4,11,8,17
chr1	68914464	.	G	A	558.36	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=3.375;FractionInformativeReads=1;MQ=60;MQRankSum=0.777;QD=15.09;ReadPosRankSum=0.899;SOR=1.596;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,20:37:99:587,0,417:6,11,4,16
chr1	68939744	.	A	G	759.61	PASS	AC=2;AF=0.609;AN=2;DP=1415;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1492,114,0:0,0,33,5
chr1	68939908	.	A	G	11214	PASS	AC=2;AF=0.977;AN=2;DP=13453;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,244:244:99:7531,732,0:0,0,132,112
chr1	68940883	.	T	TTA	3497.65	PASS	AC=2;AF=0.763;AN=2;DP=8525;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:9715,653,0:0,0,102,113
chr1	68943436	.	G	A	498.72	PASS	AC=2;AF=0.75;AN=2;DP=989;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:565,39,0:0,0,8,5
chr1	68943442	.	A	G	501.72	PASS	AC=2;AF=0.743;AN=2;DP=1024;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:39:565,39,0:0,0,7,5
chr1	68943665	.	T	G	335.59	PASS	AC=2;AF=0.606;AN=2;DP=1974;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1307,132,0:0,0,20,24
chr1	68947318	.	C	CA	354.35	PASS	AC=2;AF=0.852;AN=2;DP=3103;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2059,195,0:0,0,30,35
chr1	68952564	.	AACACACACAC	AACACAC,AACACACAC,AACAC,A	93.24	PASS	AC=0,2,0,0;AF=0.125,0.528,0.125,0.014;AN=2;DP=478;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:19:57:0,0,14,5
chr1	68960476	.	T	G	622.24	PASS	AC=2;AF=0.765;AN=2;DP=519;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:366,30,0:0,0,3,7
chr1	70034370	.	C	CCAGCCGCGTG	2219.88	PASS	AC=2;AF=0.943;AN=2;DP=8469;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:6461,449,0:0,0,50,100
chr1	70144056	.	T	C	927.37	PASS	AC=1;AF=0.5;AN=2;DP=324;FractionInformativeReads=1;MQ=60;set=variant23-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,51:98:99:1271,0,1072:30,17,32,19
chr1	70225832	.	G	A	735.01	PASS	AC=1;AF=0.5;AN=2;DP=712;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant12-variant17-variant20-variant22-variant23-variant26-variant28-variant31-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:502,0,428:10,5,13,5
chr1	70304758	.	A	G	952.03	PASS	AC=1;AF=0.688;AN=2;DP=2386;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant10-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:730,0,756:18,10,17,16
chr1	70340629	.	G	A	2594.96	PASS	AC=2;AF=0.722;AN=2;DP=7785;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5349,522,0:0,0,62,112
chr1	70397087	.	T	C	3168.89	PASS	AC=2;AF=0.722;AN=2;DP=6777;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5558,525,0:0,0,103,72
chr1	70397147	.	T	G	2732.04	PASS	AC=1;AF=0.5;AN=2;DP=166;FS=2.005;FractionInformativeReads=1;MQ=60;MQRankSum=2.073;QD=16.46;ReadPosRankSum=2.542;SOR=0.568;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,105:166:99:2760,0,1559:28,33,53,52
chr1	70446182	.	G	A	232.53	PASS	AC=1;AF=0.5;AN=2;DP=86;FractionInformativeReads=1;MQ=60;set=variant7-variant17-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:339,0,271:3,6,1,8
chr1	70460129	.	T	G	1680.23	PASS	AC=1;AF=0.5;AN=2;DP=437;MQ=60;set=variant7-variant17-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,51:125:99:1207,0,1911:42,32,26,25
chr1	70460238	.	C	T	1396.95	PASS	AC=1;AF=0.5;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant7-variant17-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,37:94:99:869,0,1612:24,33,13,24
chr1	70486660	.	A	G	759.36	PASS	AC=1;AF=0.5;AN=2;DP=220;FractionInformativeReads=1;MQ=60;set=variant7-variant17-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:608,0,597:14,7,16,11
chr1	70587360	.	C	T	1755.48	PASS	AC=2;AF=0.774;AN=2;DP=2499;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1918,177,0:0,0,40,19
chr1	70611347	.	A	G	5810.49	PASS	AC=2;AF=0.966;AN=2;DP=7695;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4459,426,0:0,0,77,65
chr1	70654981	.	GAAA	GAA,GA,G,GAAAA	142.08	PASS	AC=0,1,0,0;AF=0.265,0.176,0.118,0.015;AN=2;DP=3233;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:36:99:4,9,11,12
chr1	70718273	.	A	ATT	8320.52	PASS	AC=2;AF=1;AN=2;DP=7006;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:6497,442,0:0,0,85,61
chr1	70727120	.	A	C	1028.57	PASS	AC=1;AF=0.5;AN=2;DP=105;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.069;QD=9.8;ReadPosRankSum=-1.586;SOR=0.661;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,46:105:99:1057,0,1460:29,30,23,23
chr1	70766399	.	CT	C	76.94	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=0.857;MQ=60;MQRankSum=-0.529;QD=5.5;ReadPosRankSum=1.309;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:114,0,167:5,2,4,1
chr1	70779359	.	G	A	561.13	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.119;QD=13.69;ReadPosRankSum=0.198;SOR=0.856;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:589,0,316:10,7,15,9
chr1	70820313	.	G	A	1350.95	PASS	AC=1;AF=0.5;AN=2;DP=213;FractionInformativeReads=1;MQ=60;set=variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,47:97:99:1204,0,1409:29,21,24,23
chr1	70831841	.	C	T	1017.49	PASS	AC=1;AF=0.583;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant30-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:560,0,415:12,4,15,7
chr1	70887183	.	A	C	413.34	PASS	AC=1;AF=0.667;AN=2;DP=193;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant11-variant20-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:297,0,378:10,3,7,3
chr1	70896165	.	G	A	272.38	PASS	AC=1;AF=0.5;AN=2;DP=122;FractionInformativeReads=1;MQ=60;set=variant7-variant16-variant22-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:179,0,281:2,8,1,5
chr1	70904523	.	T	TTGTG,TTGTGTG,TTGTGTGTG,TTG	645.31	PASS	AC=1,0,0,0;AF=0.488,0.321,0.024,0.012;AN=2;DP=2516;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:33:99:4,9,3,17
chr1	71327936	.	T	TA	418.23	PASS	AC=1;AF=0.684;AN=2;DP=896;MQ=60;set=variant-variant4-variant6-variant11-variant12-variant13-variant15-variant18-variant21-variant22-variant23-variant25-variant26-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,24:53:99:528,0,665:17,12,17,7
chr1	71328234	.	A	G	160.65	PASS	AC=1;AF=0.711;AN=2;DP=289;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant11-variant12-variant13-variant15-variant18-variant21-variant22-variant23-variant25-variant26-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:225,0,203:1,5,0,6
chr1	71331220	.	G	A	757.32	PASS	AC=1;AF=0.545;AN=2;DP=199;MQ=60;set=variant4-variant6-variant13-variant15-variant21-variant22-variant23-variant25-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:534,0,373:10,2,14,0
chr1	71331498	.	A	G	3027.21	PASS	AC=1;AF=0.955;AN=2;DP=5342;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:51,65:116:99:1611,0,1230:20,31,29,36
chr1	71334756	.	A	T	462.06	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:359,0,598:15,6,11,2
chr1	71351785	.	C	T	135.82	PASS	AC=1;AF=0.5;AN=2;DP=45;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:279,0,485:13,2,7,1
chr1	71419499	.	C	T	1045.7	PASS	AC=1;AF=0.86;AN=2;DP=1554;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:390,0,567:5,15,4,12
chr1	71436747	.	C	A	3689.55	PASS	AC=1;AF=0.529;AN=2;DP=4183;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant13-variant18-variant21-variant22-variant24-variant29-variant31-variant32-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:118,103:221:99:2617,0,3344:60,58,62,41
chr1	71437471	.	T	A	1004.05	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=0;FractionInformativeReads=0.961;MQ=60;MQRankSum=-0.754;QD=9.84;ReadPosRankSum=2.219;SOR=0.678;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,51:98:99:1032,0,1091:21,26,23,28
chr1	71475063	.	T	C	2686.61	PASS	AC=1;AF=0.5;AN=2;DP=1698;MQ=60;set=variant3-variant7-variant10-variant17-variant21-variant27-variant28-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,71:153:99:1895,0,2364:38,44,30,41
chr1	71476872	.	G	A	1641.41	PASS	AC=1;AF=0.633;AN=2;DP=3930;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant26-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,57:119:99:1538,0,1920:18,44,24,33
chr1	71477398	.	A	T	4000.1	PASS	AC=1;AF=0.5;AN=2;DP=1946;MQ=60;set=variant3-variant7-variant10-variant17-variant21-variant27-variant28-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,95:161:99:2678,0,1941:39,27,53,42
chr1	71477841	.	A	T	6766.42	PASS	AC=1;AF=0.5;AN=2;DP=4256;MQ=60;set=variant3-variant7-variant10-variant17-variant21-variant27-variant28-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:186,174:360:99:4475,0,4795:79,107,78,96
chr1	71512643	.	C	A	5407.29	PASS	AC=1;AF=0.5;AN=2;DP=3662;MQ=60;set=variant3-variant7-variant10-variant12-variant17-variant21-variant27-variant28-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:160,144:304:99:3527,0,4170:81,79,71,73
chr1	71513530	.	C	T	438.24	PASS	AC=1;AF=0.5;AN=2;DP=333;MQ=60;set=variant3-variant7-variant10-variant12-variant17-variant21-variant27-variant28-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:321,0,267:7,5,5,7
chr1	71529401	.	C	T	2108.47	PASS	AC=2;AF=0.69;AN=2;DP=3281;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,103:104:99:3801,302,0:1,0,47,56
chr1	71533287	.	A	T	242.68	PASS	AC=1;AF=0.607;AN=2;DP=163;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant9-variant11-variant15-variant16-variant19-variant22-variant24-variant32-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:60:60,0,78:2,2,2,1
chr1	71537943	.	A	G	726.16	PASS	AC=1;AF=0.536;AN=2;DP=809;MQ=60;set=variant-variant5-variant7-variant9-variant11-variant15-variant16-variant19-variant22-variant32-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,31:54:99:796,0,542:8,15,10,21
chr1	71537980	.	C	T	411.77	PASS	AC=1;AF=0.5;AN=2;DP=429;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant10-variant12-variant17-variant21-variant27-variant28-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:341,0,535:7,13,3,10
chr1	71538191	.	A	G	1015.91	PASS	AC=1;AF=0.5;AN=2;DP=669;MQ=60;set=variant3-variant7-variant10-variant12-variant17-variant21-variant27-variant28-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:520,0,820:20,10,14,7
chr1	71544069	.	G	A	610.15	PASS	AC=1;AF=0.5;AN=2;DP=295;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant10-variant12-variant17-variant21-variant27-variant28-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:312,0,416:11,2,9,1
chr1	71544385	.	T	A	277.92	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.321;QD=10.29;ReadPosRankSum=-2.393;SOR=0.711;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:306,0,395:6,10,4,7
chr1	71870127	.	G	A	7671.11	PASS	AC=2;AF=1;AN=2;DP=10283;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,193:193:99:6359,579,0:0,0,84,109
chr1	71870272	.	C	CT	1494.3	PASS	AC=2;AF=1;AN=2;DP=2492;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1630,159,0:0,0,17,36
chr1	72058367	.	C	T	823.56	PASS	AC=2;AF=0.989;AN=2;DP=918;MQ=60;MQRankSum=1.256;ReadPosRankSum=-2.927;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:589,45,0:0,0,14,1
chr1	72058405	.	T	C	1230.37	PASS	AC=2;AF=0.989;AN=2;DP=1599;MQ=60;MQRankSum=0.456;ReadPosRankSum=-0.76;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:990,93,0:0,0,22,9
chr1	72058552	.	G	A	2583.01	PASS	AC=2;AF=0.989;AN=2;DP=4517;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2322,230,0:0,0,41,36
chr1	72058775	.	G	A	145.31	PASS	AC=2;AF=0.988;AN=2;DP=345;FS=0;MQ=60;MQRankSum=0.198;ReadPosRankSum=1.495;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:345,24,0:0,0,0,8
chr1	72242039	.	G	A	356.44	PASS	AC=1;AF=0.951;AN=2;DP=574;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:229,0,233:2,6,1,6
chr1	74491800	.	T	A	4303.35	PASS	AC=1;AF=0.953;AN=2;DP=5238;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,49:103:99:1103,0,1491:30,24,26,23
chr1	74507711	.	T	G	535.76	PASS	AC=1;AF=0.964;AN=2;DP=464;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,80:1,2,1,1
chr1	74550023	.	A	T	161.28	PASS	AC=1;AF=0.75;AN=2;DP=24;FractionInformativeReads=1;MQ=60;set=variant7-variant13-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:37:81,0,37:0,1,0,2
chr1	74575182	.	C	T	1488.2	PASS	AC=1;AF=0.953;AN=2;DP=2300;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:454,0,654:15,9,10,8
chr1	74610233	.	TAA	TA,TAAA,T	196.97	PASS	AC=0,0,1;AF=0.283,0.133,0.1;AN=2;DP=887;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant22-variant23-variant24-filterInvariant25-variant27-variant28-variant31-variant33-variant34-variant35-variant36-filterInvariant37-filterInvariant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/3:12:99:2,5,4,1
chr1	74645641	.	A	G	3363.68	PASS	AC=1;AF=0.953;AN=2;DP=3463;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,41:71:99:1256,0,839:23,7,30,11
chr1	74646514	.	C	T	1605.52	PASS	AC=2;AF=1;AN=2;DP=2047;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1487,126,0:0,0,11,31
chr1	74663709	.	G	A	374.6	PASS	AC=1;AF=0.712;AN=2;DP=1665;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:659,0,588:16,6,17,8
chr1	74663814	.	C	G	1136.42	PASS	AC=1;AF=0.712;AN=2;DP=3691;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,55:89:99:1327,0,805:20,14,28,27
chr1	74664149	.	T	C	919.85	PASS	AC=1;AF=0.712;AN=2;DP=3458;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,48:110:99:1119,0,1571:25,37,18,30
chr1	74665493	.	G	A	1513.15	PASS	AC=1;AF=0.712;AN=2;DP=5057;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,57:136:99:1365,0,1861:38,41,23,34
chr1	74669973	.	T	G	399.7	PASS	AC=1;AF=0.964;AN=2;DP=377;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:31:165,0,31:1,0,4,0
chr1	74671519	.	A	G	4618.95	PASS	AC=1;AF=0.712;AN=2;DP=8828;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,132:252:99:3398,0,2798:65,55,67,65
chr1	74672323	.	C	A	4620.89	PASS	AC=1;AF=0.712;AN=2;DP=12005;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,177:340:99:4746,0,4331:81,82,93,84
chr1	74672474	.	G	A	3804.42	PASS	AC=1;AF=0.712;AN=2;DP=13061;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:174,195:369:99:5014,0,4140:75,99,88,107
chr1	74672640	.	T	A	4971.62	PASS	AC=1;AF=0.712;AN=2;DP=13530;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,145:308:99:3622,0,4329:92,71,71,74
chr1	74699331	.	C	G	1073.11	PASS	AC=1;AF=0.71;AN=2;DP=3197;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,49:97:99:1268,0,1174:25,23,22,27
chr1	74701295	.	T	A	236.09	PASS	AC=2;AF=1;AN=2;DP=231;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	74701950	.	T	A	354.72	PASS	AC=1;AF=0.655;AN=2;DP=1113;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:415,0,427:6,12,6,10
chr1	74716515	.	CT	CTT,C	472.78	PASS	AC=0,1;AF=0.329,0.195;AN=2;DP=4467;set=variant-variant2-filterInvariant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:76:99:16,39,4,17
chr1	74801864	.	A	G	182.04	PASS	AC=1;AF=0.5;AN=2;DP=149;FractionInformativeReads=1;MQ=60;set=variant-variant15-variant21-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:485,0,595:6,15,5,12
chr1	74819077	.	T	G	2467.88	PASS	AC=2;AF=0.932;AN=2;DP=4018;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2542,255,0:0,0,42,43
chr1	74836228	.	T	A	1323.2	PASS	AC=1;AF=0.5;AN=2;DP=511;MQ=60;set=variant-variant15-variant21-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,51:99:99:1308,0,1276:27,21,26,25
chr1	74836916	.	A	G	2895.57	PASS	AC=1;AF=0.756;AN=2;DP=8992;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,101:264:99:2409,0,4132:97,66,62,39
chr1	74836977	.	A	T	3743.5	PASS	AC=1;AF=0.756;AN=2;DP=12687;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:205,149:354:99:3190,0,4849:101,104,76,73
chr1	74837216	.	T	TAG	7050.36	PASS	AC=2;AF=1;AN=2;DP=7081;FS=0;MQ=60;MQRankSum=2.045;ReadPosRankSum=0.574;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,150:152:99:4526,407,0:1,1,71,79
chr1	74837776	.	GAAAAAAAAA	GA,G,GAAAAAAA,GAAAAAAAA	3323.8	PASS	AC=1,0,0,0;AF=0.795,0.057,0.011,0.057;AN=2;DP=5576;set=Intersection	GT:DP:GQ:SB	0/1:69:99:11,7,25,26
chr1	74838026	.	A	G	4433.92	PASS	AC=1;AF=0.69;AN=2;DP=3069;MQ=60;set=variant2-variant3-variant6-variant8-variant11-variant12-variant17-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,83:156:99:2166,0,2188:19,54,29,54
chr1	74841173	.	A	C	1553.67	PASS	AC=2;AF=1;AN=2;DP=2525;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1513,120,0:0,0,22,18
chr1	74901739	.	CTTT	CTT,CT,C	256.31	PASS	AC=1,0,0;AF=0.395,0.316,0.013;AN=2;DP=1553;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:39:83:8,2,17,12
chr1	74936165	.	G	A	1312.15	PASS	AC=1;AF=0.5;AN=2;DP=136;FS=0.645;FractionInformativeReads=1;MQ=60;MQRankSum=-1.731;QD=9.65;ReadPosRankSum=-0.736;SOR=0.6;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,56:136:99:1340,0,2220:42,38,28,28
chr1	74936374	.	A	G	3468.76	PASS	AC=2;AF=0.743;AN=2;DP=3977;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3398,290,0:0,0,43,54
chr1	74936454	.	G	C	3039.5	PASS	AC=2;AF=0.716;AN=2;DP=4099;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,106:107:99:3442,309,0:0,1,54,52
chr1	74937749	.	A	G	4541.5	PASS	AC=2;AF=0.716;AN=2;DP=6028;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3628,344,0:0,0,51,64
chr1	74941210	.	C	T	5433.34	PASS	AC=2;AF=0.716;AN=2;DP=6287;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4485,413,0:0,0,77,61
chr1	74941293	.	G	A	7972.53	PASS	AC=2;AF=0.743;AN=2;DP=9160;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,223:223:99:6765,665,0:0,0,116,107
chr1	74954856	.	C	CT	498.73	PASS	AC=1;AF=0.5;AN=2;DP=70;FractionInformativeReads=1;MQ=60;set=variant4-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:270,0,333:10,3,8,3
chr1	75006027	.	A	G	1731.91	PASS	AC=1;AF=0.671;AN=2;DP=2003;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,29:51:99:777,0,524:8,14,9,20
chr1	75006076	.	G	A	1109.78	PASS	AC=2;AF=0.966;AN=2;DP=1278;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:734,60,0:0,0,3,17
chr1	75010117	.	T	C	4196.43	PASS	AC=2;AF=0.966;AN=2;DP=5150;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3421,294,0:0,0,24,74
chr1	75010153	.	A	G	2191.27	PASS	AC=2;AF=0.966;AN=2;DP=2302;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1657,122,0:0,0,2,39
chr1	75035748	.	C	T	2638.01	PASS	AC=1;AF=0.5;AN=2;DP=230;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.348;QD=11.47;ReadPosRankSum=-0.601;SOR=0.663;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:117,113:230:99:2666,0,2620:55,62,54,59
chr1	75036783	.	T	C	3240.83	PASS	AC=2;AF=1;AN=2;DP=5005;FS=0;MQ=60;MQRankSum=0.214;ReadPosRankSum=-1.538;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3776,353,0:0,0,72,46
chr1	75036812	.	C	T	4009.56	PASS	AC=2;AF=1;AN=2;DP=6400;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4483,422,0:0,0,78,63
chr1	75037557	.	G	A	2952.21	PASS	AC=1;AF=0.5;AN=2;DP=221;FS=2.285;FractionInformativeReads=1;MQ=60;MQRankSum=-1.496;QD=13.36;ReadPosRankSum=-1.549;SOR=0.555;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:103,118:221:99:2980,0,2744:45,58,56,62
chr1	75072264	.	G	T	190.65	PASS	AC=1;AF=0.639;AN=2;DP=881;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,19:27:99:533,0,201:6,2,13,6
chr1	75097426	.	G	C	866.23	PASS	AC=1;AF=0.667;AN=2;DP=3500;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,50:101:99:1302,0,1351:31,20,29,21
chr1	75100640	.	A	G	94.66	PASS	AC=1;AF=0.662;AN=2;DP=706;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:354,0,165:2,6,4,9
chr1	75108863	.	A	C	1486.22	PASS	AC=2;AF=0.791;AN=2;DP=2175;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,56:57:99:1677,161,0:1,0,21,35
chr1	75112573	.	GACAC	GACACACACAC,GACACACAC,G	156.8	PASS	AC=1,0,0;AF=0.618,0.029,0.059;AN=2;DP=77;FS=0;set=variant2-variant6-variant7-variant9-variant10-variant12-variant17-variant24-variant27-variant28-variant31-variant32-variant35-variant38-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:9:99:2,2,2,3
chr1	75132462	.	TA	TAA,T	1057.46	PASS	AC=1,0;AF=0.5,0.083;AN=2;DP=1812;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant12-variant13-variant18-variant21-variant25-variant27-variant28-variant30-variant31-variant32-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:60:99:15,17,13,15
chr1	75171784	.	A	T	3285.07	PASS	AC=1;AF=0.5;AN=2;DP=293;FS=2.565;FractionInformativeReads=1;MQ=60;MQRankSum=2.14;QD=11.21;ReadPosRankSum=-0.003;SOR=0.858;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:161,132:293:99:3313,0,4063:72,89,54,78
chr1	75190452	.	C	T	2572.53	PASS	AC=2;AF=0.775;AN=2;DP=3741;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2534,265,0:0,0,47,42
chr1	75198763	.	A	C	698.8	PASS	AC=2;AF=1;AN=2;DP=1735;FS=0;MQ=60;MQRankSum=-0.433;ReadPosRankSum=1.589;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1323,129,0:0,0,26,17
chr1	75199152	.	C	T	3618.33	PASS	AC=2;AF=1;AN=2;DP=5827;FS=0;MQ=60;MQRankSum=1.641;ReadPosRankSum=0.524;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3481,326,0:0,0,41,68
chr1	75594154	.	G	C	214.8	PASS	AC=1;AF=0.5;AN=2;DP=53;FractionInformativeReads=1;MQ=60;set=variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:246,0,438:10,7,7,4
chr1	75603055	.	A	G	2827.66	PASS	AC=2;AF=1;AN=2;DP=3764;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2386,192,0:0,0,17,47
chr1	75603080	.	C	T	1074.31	PASS	AC=1;AF=0.5;AN=2;DP=133;FractionInformativeReads=1;MQ=60;set=variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:811,0,854:8,20,10,18
chr1	75609415	.	G	A	283.39	PASS	AC=1;AF=0.5;AN=2;DP=43;FractionInformativeReads=1;MQ=60;set=variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:539,0,339:9,4,13,2
chr1	75614380	.	CT	C	750.98	PASS	AC=1;AF=0.763;AN=2;DP=2933;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:339,0,318:5,11,8,9
chr1	75626420	.	A	T	2176.96	PASS	AC=1;AF=0.943;AN=2;DP=1979;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:490,0,565:14,2,14,2
chr1	75627328	.	C	T	1962.09	PASS	AC=1;AF=0.943;AN=2;DP=1910;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:872,0,578:0,17,8,20
chr1	75668273	.	C	T	3042.05	PASS	AC=1;AF=0.5;AN=2;DP=1592;MQ=60;set=variant2-variant5-variant13-variant14-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:108,103:211:99:2848,0,3152:55,53,52,51
chr1	75668544	.	T	TA	862.14	PASS	AC=1;AF=0.5;AN=2;DP=901;MQ=60;set=variant2-variant5-variant13-variant14-variant22-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,45:88:99:942,0,928:25,18,21,24
chr1	75668610	.	A	G	2107.21	PASS	AC=1;AF=0.5;AN=2;DP=1172;MQ=60;set=variant2-variant5-variant13-variant14-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,77:150:99:2047,0,1831:40,33,44,33
chr1	75669163	.	T	A	1693.32	PASS	AC=1;AF=0.5;AN=2;DP=874;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant13-variant14-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,52:116:99:1266,0,1791:45,19,30,22
chr1	75670670	.	C	A	2618.44	PASS	AC=2;AF=0.567;AN=2;DP=3512;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant22-variant27-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5731,545,0:0,0,92,90
chr1	75670957	.	G	A	2385.39	PASS	AC=1;AF=0.556;AN=2;DP=1552;set=variant4-variant9-variant10-variant11-variant15-variant22-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,68:132:99:1681,0,1576:31,33,25,43
chr1	75670975	.	A	G	1872.85	PASS	AC=1;AF=0.5;AN=2;DP=943;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant13-variant14-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,58:122:99:1397,0,1706:24,40,25,33
chr1	75671091	.	C	T	977.96	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=1.028;FractionInformativeReads=1;MQ=60;MQRankSum=-0.886;QD=16.58;ReadPosRankSum=0.321;SOR=0.601;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,37:59:99:1006,0,601:10,12,19,18
chr1	75671257	.	T	C	1372.55	PASS	AC=1;AF=0.5;AN=2;DP=96;FS=4.017;FractionInformativeReads=1;MQ=60;MQRankSum=-1.967;QD=14.3;ReadPosRankSum=-0.927;SOR=1.214;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,48:96:99:1401,0,1205:28,20,33,15
chr1	75671687	.	T	C	5138.71	PASS	AC=2;AF=0.567;AN=2;DP=5882;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant22-variant27-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,314:314:99:10238,942,0:0,0,145,169
chr1	75672072	.	G	A	1166.95	PASS	AC=1;AF=0.5;AN=2;DP=867;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant13-variant14-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:66,48:114:99:1126,0,1824:35,31,23,25
chr1	75672134	.	T	C	1254.96	PASS	AC=2;AF=0.567;AN=2;DP=2128;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant22-variant27-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3902,357,0:0,0,69,50
chr1	75679569	.	C	CT,CTT	108.32	PASS	AC=1,1;AF=0.25,0.313;AN=2;DP=682;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant21-variant22-variant27-variant35-variant37-variant41-variant42	GT:DP:GQ:SB	1/2:23:99:0,0,9,14
chr1	75681511	.	T	C	4173.6	PASS	AC=1;AF=0.907;AN=2;DP=6078;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,57:150:99:1131,0,2114:41,52,25,32
chr1	75685643	.	T	C	281.6	PASS	AC=1;AF=0.645;AN=2;DP=683;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:446,0,426:2,11,4,10
chr1	75699646	.	T	C	479.53	PASS	AC=2;AF=0.583;AN=2;DP=1409;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant13-variant14-variant19-variant20-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1530,144,0:0,0,33,15
chr1	75699771	.	A	G	837.83	PASS	AC=2;AF=0.583;AN=2;DP=2783;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant13-variant14-variant19-variant20-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2560,258,0:0,0,38,48
chr1	75699831	.	G	A	527.6	PASS	AC=2;AF=0.583;AN=2;DP=1691;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant13-variant14-variant19-variant20-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1627,153,0:0,0,18,33
chr1	75699932	.	G	A	196.77	PASS	AC=2;AF=0.632;AN=2;DP=166;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant11-variant13-variant14-variant19-variant20-variant24-variant26-variant27-variant28-variant32-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,0,5
chr1	75702674	.	G	A	876.38	PASS	AC=1;AF=0.55;AN=2;DP=1044;MQ=60;set=variant-variant3-variant6-variant8-variant11-variant13-variant19-variant20-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,36:59:99:892,0,547:14,9,23,13
chr1	75702956	.	C	T	220.01	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=2.963;FractionInformativeReads=1;MQ=60;MQRankSum=-0.061;QD=14.67;ReadPosRankSum=0.796;SOR=0.105;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:248,0,184:0,5,3,7
chr1	75704070	.	CATATATATATATAT	CAT,C	143.09	PASS	AC=1,1;AF=0.714,0.214;AN=2;DP=137;FS=0;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant11-variant13-variant14-variant19-variant20-variant24-variant27-variant28-variant32-variant33-variant34-variant35-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	2/1:14:99:0,0,11,3
chr1	75707410	.	C	T	43.71	PASS	AC=1;AF=0.579;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant8-variant13-variant19-variant20-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:255,0,179:5,0,7,2
chr1	75707652	.	C	T	946.26	PASS	AC=2;AF=0.583;AN=2;DP=2768;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant13-variant14-variant19-variant20-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,117:118:99:3578,317,0:1,0,54,63
chr1	75708529	.	A	T	1261.13	PASS	AC=2;AF=0.583;AN=2;DP=2034;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant13-variant14-variant19-variant20-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2073,198,0:0,0,38,28
chr1	75766186	.	G	A	205.42	PASS	AC=1;AF=0.697;AN=2;DP=331;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:72:151,0,72:2,2,4,1
chr1	75823084	.	C	T	365.08	PASS	AC=1;AF=0.988;AN=2;DP=762;FractionInformativeReads=1;MQ=60;MQRankSum=-1.264;ReadPosRankSum=-1.92;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:185,0,323:6,6,0,6
chr1	75868236	.	G	T	170.81	PASS	AC=1;AF=0.575;AN=2;DP=284;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant8-variant11-variant13-variant16-variant19-variant20-variant24-variant26-variant27-variant28-variant33-variant34-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:137,0,243:2,6,2,3
chr1	76007098	.	C	T	460.48	PASS	AC=1;AF=0.5;AN=2;DP=147;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:618,0,520:12,7,16,10
chr1	76143403	.	A	G	577.81	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=1.227;FractionInformativeReads=1;MQ=60;MQRankSum=0.256;QD=13.76;ReadPosRankSum=0.282;SOR=0.864;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,25:42:99:606,0,312:9,8,11,14
chr1	76143415	.	C	A	569.17	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=1.26;FractionInformativeReads=1;MQ=60;MQRankSum=1.974;QD=14.23;ReadPosRankSum=-0.732;SOR=1.051;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:597,0,328:8,8,10,14
chr1	76143443	.	A	G	233.22	PASS	AC=1;AF=0.615;AN=2;DP=705;FractionInformativeReads=1;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:302,0,523:7,12,7,7
chr1	76143458	.	T	C	221.81	PASS	AC=1;AF=0.565;AN=2;DP=541;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:235,0,430:5,10,6,5
chr1	76143505	.	T	C	345.13	PASS	AC=2;AF=0.955;AN=2;DP=502;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:276,24,0:0,0,4,4
chr1	76143525	.	A	T	51.23	PASS	AC=1;AF=0.5;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.358;QD=10.25;ReadPosRankSum=0.358;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:34:79,0,34:1,1,1,2
chr1	76190111	.	T	C	340.57	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=2.824;FractionInformativeReads=0.976;MQ=60;MQRankSum=1.04;QD=8.31;ReadPosRankSum=0.219;SOR=0.33;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,17:40:99:369,0,530:15,8,9,8
chr1	76190157	.	G	A	1498.7	PASS	AC=1;AF=0.5;AN=2;DP=120;FS=3.351;FractionInformativeReads=1;MQ=60;MQRankSum=0.516;QD=12.49;ReadPosRankSum=-3.392;SOR=1.002;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,65:120:99:1527,0,1208:31,24,41,24
chr1	76190564	.	G	A	1354.39	PASS	AC=1;AF=0.5;AN=2;DP=96;FS=4.506;FractionInformativeReads=0.99;MQ=60;MQRankSum=-1.502;QD=14.11;ReadPosRankSum=-0.244;SOR=0.312;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,53:95:99:1383,0,1224:9,33,17,36
chr1	76190569	.	C	G	820.43	PASS	AC=2;AF=0.635;AN=2;DP=2733;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:3624,264,0:0,0,21,62
chr1	76194054	.	C	G	691.91	PASS	AC=1;AF=0.58;AN=2;DP=1419;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,16:48:99:354,0,815:20,12,10,6
chr1	76194229	.	GT	G	3235.25	PASS	AC=2;AF=1;AN=2;DP=3651;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2097,184,0:0,0,21,40
chr1	76194306	.	A	G	1137.78	PASS	AC=2;AF=0.943;AN=2;DP=781;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:564,39,0:0,0,0,13
chr1	76198436	.	T	C	894.23	PASS	AC=1;AF=0.615;AN=2;DP=1887;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,34:64:99:876,0,859:13,17,15,19
chr1	76198785	.	G	A	1387.49	PASS	AC=1;AF=0.615;AN=2;DP=3765;MQ=60;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,60:131:99:1302,0,1635:32,39,26,34
chr1	76199345	.	C	G	1383.3	PASS	AC=1;AF=0.615;AN=2;DP=2652;MQ=60;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,39:84:99:983,0,1121:17,28,16,23
chr1	76199384	.	G	A	763.9	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=1.209;FractionInformativeReads=1;MQ=60;MQRankSum=-0.19;QD=14.15;ReadPosRankSum=-1.384;SOR=1.099;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:792,0,725:8,19,6,21
chr1	76205643	.	C	A	589.48	PASS	AC=1;AF=0.58;AN=2;DP=1718;MQ=60;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,37:74:99:714,0,920:24,13,22,15
chr1	76216330	.	T	C	125.93	PASS	AC=1;AF=0.563;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:156,0,140:1,3,0,4
chr1	76227022	.	A	G	1253.93	PASS	AC=1;AF=0.563;AN=2;DP=2208;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,42:69:99:1089,0,748:6,21,17,25
chr1	76229326	.	T	C	400	PASS	AC=2;AF=0.744;AN=2;DP=717;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:632,48,0:0,0,2,14
chr1	76234886	.	A	G	1056.39	PASS	AC=2;AF=0.955;AN=2;DP=1855;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:761,81,0:0,0,13,14
chr1	76251746	.	T	C	597.25	PASS	AC=2;AF=0.724;AN=2;DP=1067;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1039,81,0:0,0,23,4
chr1	76252011	.	G	A	2043.55	PASS	AC=2;AF=0.718;AN=2;DP=8543;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,190:191:99:5830,546,0:0,1,75,115
chr1	76252687	.	T	C	778.03	PASS	AC=2;AF=0.718;AN=2;DP=1537;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1054,102,0:0,0,23,11
chr1	76253688	.	C	T	164.94	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=2.632;FractionInformativeReads=1;MQ=60;MQRankSum=-0.466;QD=14.99;ReadPosRankSum=-1.749;SOR=1.802;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:193,0,146:2,3,1,5
chr1	76255196	.	TA	T	672.61	PASS	AC=1;AF=0.5;AN=2;DP=179;MQ=60;set=variant21-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:427,0,640:5,16,3,12
chr1	76255228	.	G	A	405.76	PASS	AC=1;AF=0.563;AN=2;DP=678;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:250,0,453:2,12,1,7
chr1	76255812	.	G	T	1021.54	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.877;QD=15.96;ReadPosRankSum=-0.243;SOR=0.752;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,35:64:99:1050,0,827:12,17,14,21
chr1	76257892	.	A	T	2559.55	PASS	AC=2;AF=0.943;AN=2;DP=3603;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2136,203,0:0,0,42,26
chr1	76260837	.	C	T	1243.09	PASS	AC=1;AF=0.563;AN=2;DP=1710;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:807,0,987:10,21,5,21
chr1	76261078	.	G	C	524.6	PASS	AC=1;AF=0.5;AN=2;DP=109;FractionInformativeReads=1;MQ=60;set=variant21-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:598,0,346:2,9,3,15
chr1	76261116	.	GC	G	301.61	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.288;QD=16.76;ReadPosRankSum=-1.821;SOR=0.269;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:339,0,461:0,8,1,9
chr1	76269372	.	T	C	303.56	PASS	AC=1;AF=0.645;AN=2;DP=692;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:141,0,330:8,0,3,1
chr1	76276353	.	T	C	403.48	PASS	AC=1;AF=0.563;AN=2;DP=773;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:583,0,405:11,7,15,5
chr1	76280543	.	A	G	161.28	PASS	AC=1;AF=0.905;AN=2;DP=264;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:83:83,0,202:5,2,3,0
chr1	76313874	.	C	T	593.8	PASS	AC=1;AF=0.533;AN=2;DP=723;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant11-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:399,0,576:12,12,11,6
chr1	76333163	.	T	G	764.13	PASS	AC=1;AF=0.563;AN=2;DP=1504;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,32:51:99:760,0,408:11,8,17,15
chr1	76344011	.	C	A	2054.29	PASS	AC=1;AF=0.756;AN=2;DP=2784;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,20:51:99:603,0,864:10,21,3,17
chr1	76344711	.	A	T	3982.71	PASS	AC=1;AF=0.756;AN=2;DP=4172;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,63:118:99:1526,0,1254:31,24,33,30
chr1	76344826	.	G	A	780.98	PASS	AC=1;AF=0.5;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant21-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,41:76:99:1065,0,778:13,22,14,27
chr1	76344856	.	T	C	704.69	PASS	AC=1;AF=0.533;AN=2;DP=716;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant11-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,23:43:99:643,0,517:7,13,5,18
chr1	76344920	.	G	A	670.76	PASS	AC=2;AF=1;AN=2;DP=602;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:622,42,0:0,0,0,14
chr1	76346920	.	C	CAT	4262.9	PASS	AC=2;AF=1;AN=2;DP=3567;FS=0;MQ=60;MQRankSum=0.137;ReadPosRankSum=-2.254;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3465,234,0:0,0,50,26
chr1	76378345	.	GTA	G	173.83	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=57.9;MQRankSum=1.666;QD=19.31;ReadPosRankSum=-0.762;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:63:211,0,63:2,0,6,1
chr1	76378361	.	T	A	240.04	PASS	AC=1;AF=0.558;AN=2;DP=579;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant15-variant16-variant17-filterInvariant22-variant24-variant27-variant28-variant29-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:70:70,0,474:7,4,4,0
chr1	76378363	.	T	A	239.97	PASS	AC=1;AF=0.529;AN=2;DP=381;set=variant-variant2-variant3-variant5-variant6-variant9-variant15-variant22-variant24-variant28-variant29-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:70:70,0,474:8,4,4,0
chr1	76397517	.	C	T	321.1	PASS	AC=1;AF=0.5;AN=2;DP=63;FractionInformativeReads=1;MQ=60;set=variant21-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:369,0,180:5,2,10,2
chr1	76397972	.	C	T	2883.09	PASS	AC=1;AF=0.563;AN=2;DP=4408;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant15-variant18-variant21-variant24-variant27-variant28-variant29-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,76:159:99:1943,0,2169:47,36,44,32
chr1	76608777	.	C	T	417.52	PASS	AC=2;AF=0.708;AN=2;DP=503;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:668,54,0:0,0,4,14
chr1	76878097	.	G	A	1080.3	PASS	AC=1;AF=0.5;AN=2;DP=100;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.072;QD=10.8;ReadPosRankSum=-0.849;SOR=0.695;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,43:100:99:1109,0,1497:20,37,15,28
chr1	77042405	.	G	A	1039.95	PASS	AC=2;AF=0.65;AN=2;DP=705;MQ=60;set=variant2-variant8-variant9-variant10-variant11-variant13-variant14-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant30-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:872,69,0:0,0,21,2
chr1	77042631	.	G	C	2561.33	PASS	AC=2;AF=0.6;AN=2;DP=2259;MQ=60;set=variant2-variant8-variant9-variant10-variant11-variant13-variant14-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant30-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2250,221,0:0,0,24,51
chr1	77093010	.	C	T	1096.77	PASS	AC=1;AF=0.615;AN=2;DP=883;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,16:25:99:645,0,646:9,0,15,1
chr1	77093011	.	T	G	1096.77	PASS	AC=1;AF=0.615;AN=2;DP=900;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,16:25:99:645,0,646:9,0,15,1
chr1	77093180	.	C	A	4268.09	PASS	AC=1;AF=0.615;AN=2;DP=4192;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,87:148:99:2373,0,1426:28,33,45,42
chr1	77094826	.	A	G	2026.72	PASS	AC=1;AF=0.538;AN=2;DP=884;MQ=60;set=variant-variant4-variant10-variant11-variant13-variant20-variant22-variant23-variant31-variant32-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:853,0,1105:15,19,4,20
chr1	77094985	.	C	G	5440.92	PASS	AC=1;AF=0.615;AN=2;DP=3698;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,69:132:99:1918,0,1629:36,27,44,25
chr1	77096987	.	CAA	C,CA,CAAA	1869.49	PASS	AC=0,1,0;AF=0.483,0.117,0.017;AN=2;DP=2054;set=variant-variant3-variant4-variant5-filterInvariant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-filterInvariant21-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant34-variant38-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:43:99:10,8,18,7
chr1	77097381	.	T	G	4946.35	PASS	AC=1;AF=0.538;AN=2;DP=1376;MQ=60;set=variant-variant4-variant10-variant11-variant13-variant20-variant22-variant23-variant31-variant32-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,44:86:99:1455,0,1214:14,28,11,33
chr1	77097790	.	A	G	3066.33	PASS	AC=1;AF=0.615;AN=2;DP=2564;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,45:88:99:1202,0,1084:19,24,21,24
chr1	77098034	.	A	G	2695.89	PASS	AC=1;AF=0.5;AN=2;DP=691;MQ=60;set=variant13-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:121,143:264:99:4063,0,3180:66,55,87,56
chr1	77098562	.	A	G	12223.8	PASS	AC=2;AF=0.977;AN=2;DP=17186;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,361:361:99:10768,1079,0:0,0,182,179
chr1	77098729	.	G	T	3408.85	PASS	AC=1;AF=0.615;AN=2;DP=2809;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,47:106:99:1325,0,1666:18,41,13,34
chr1	77098761	.	G	T	918.62	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=11.353;FractionInformativeReads=1;MQ=60;MQRankSum=0.148;QD=12.09;ReadPosRankSum=2.325;SOR=2.015;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,31:76:99:947,0,1253:16,29,5,26
chr1	77099691	.	G	A	20631.3	PASS	AC=1;AF=0.615;AN=2;DP=13518;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant29-variant31-variant32-variant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:242,240:482:99:6289,0,6622:103,139,99,141
chr1	77530101	.	TAC	T	1192.19	PASS	AC=2;AF=0.706;AN=2;DP=1381;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1678,147,0:0,0,29,20
chr1	77530463	.	A	G	7637.25	PASS	AC=1;AF=0.591;AN=2;DP=3126;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant14-variant21-variant31-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:127,139:266:99:3479,0,3335:83,44,83,56
chr1	77554542	.	G	A	985.25	PASS	AC=2;AF=0.579;AN=2;DP=1001;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant14-variant20-variant21-variant22-variant25-variant27-variant35-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1959,165,0:0,0,43,12
chr1	77555481	.	C	T	1094.39	PASS	AC=2;AF=0.77;AN=2;DP=4190;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3239,297,0:0,0,47,52
chr1	77555737	.	C	T	2296.93	PASS	AC=1;AF=0.5;AN=2;DP=2209;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant21-variant22-variant25-variant27-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,72:141:99:2051,0,1979:49,20,53,19
chr1	77558057	.	G	C	144.97	PASS	AC=1;AF=0.5;AN=2;DP=917;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant14-variant21-variant22-variant25-variant27-variant28-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:425,0,300:7,5,9,6
chr1	77588131	.	T	C	44.17	PASS	AC=1;AF=0.577;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant12-variant21-variant22-variant25-variant27-variant28-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:31:162,0,31:1,0,0,4
chr1	77619318	.	T	TA	237.38	PASS	AC=1;AF=0.5;AN=2;DP=177;MQ=60;set=variant-variant14-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,13:39:99:254,0,628:18,8,12,1
chr1	77619537	.	C	A	2119.32	PASS	AC=1;AF=0.5;AN=2;DP=180;FS=0.549;FractionInformativeReads=1;MQ=60;MQRankSum=0.966;QD=11.77;ReadPosRankSum=2.431;SOR=0.615;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,88:180:99:2148,0,2201:42,50,42,46
chr1	77619762	.	A	G	760.84	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=4.872;FractionInformativeReads=1;MQ=60;MQRankSum=0.051;QD=11.53;ReadPosRankSum=-0.797;SOR=1.321;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,31:66:99:789,0,835:18,17,20,11
chr1	77620035	.	T	C	9960.51	PASS	AC=2;AF=1;AN=2;DP=13635;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,295:295:99:8825,884,0:0,0,141,154
chr1	77627096	.	G	A	1673.78	PASS	AC=2;AF=1;AN=2;DP=2297;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1726,138,0:0,0,15,31
chr1	77627111	.	A	G	607.1	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=2.881;FractionInformativeReads=1;MQ=60;MQRankSum=-0.651;QD=13.49;ReadPosRankSum=0.56;SOR=0.319;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:635,0,778:6,19,7,13
chr1	77634948	.	G	A	2024.33	PASS	AC=2;AF=1;AN=2;DP=3376;FS=0;MQ=60;MQRankSum=0.231;ReadPosRankSum=-0.52;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2467,237,0:0,0,47,32
chr1	77635148	.	A	G	121.66	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,15:18:83:531,0,83:0,3,2,13
chr1	77685042	.	T	C	1540.7	PASS	AC=1;AF=0.5;AN=2;DP=764;MQ=60;set=variant-variant14-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:87,66:153:99:1657,0,2311:51,36,32,34
chr1	77748664	.	C	T	2632.92	PASS	AC=2;AF=0.646;AN=2;DP=2824;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant12-variant13-variant17-variant18-variant20-variant22-variant23-variant27-variant28-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3559,345,0:0,0,64,51
chr1	77748786	.	A	G	2926.04	PASS	AC=2;AF=0.63;AN=2;DP=3110;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3129,296,0:0,0,49,50
chr1	77748979	.	G	T	645.39	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.494;QD=15.74;ReadPosRankSum=0.094;SOR=0.856;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,25:41:99:674,0,432:7,9,10,15
chr1	77759380	.	C	G	230.64	PASS	AC=1;AF=0.583;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant11-variant13-variant17-variant23-variant32-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:226,0,279:7,1,6,1
chr1	77759578	.	A	G	1126.99	PASS	AC=1;AF=0.583;AN=2;DP=1307;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant11-variant13-variant17-variant23-variant32-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,45:84:99:1081,0,1096:13,26,19,26
chr1	77763071	.	A	G	575.17	PASS	AC=1;AF=0.881;AN=2;DP=1502;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:383,0,392:11,4,10,5
chr1	77763542	.	G	A	2505.3	PASS	AC=2;AF=1;AN=2;DP=3408;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1821,162,0:0,0,22,32
chr1	77883412	.	C	T	380.4	PASS	AC=1;AF=0.563;AN=2;DP=931;MQ=60;set=variant2-variant8-variant9-variant10-variant13-variant15-variant19-variant21-variant24-variant25-variant28-variant29-variant33-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:683,0,798:7,20,8,18
chr1	78001881	.	T	C	672.23	PASS	AC=1;AF=0.989;AN=2;DP=922;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.52;ReadPosRankSum=-1.283;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:457,0,390:6,9,7,12
chr1	78149167	.	G	GGGCGGC,GGGCGGCGGCGGCGGC	961.31	PASS	AC=0,1;AF=0.333,0.167;AN=2;DP=147;MQ=60;set=variant37-variant39-variant41	GT:DP:GQ:SB	0/2:31:99:5,10,5,11
chr1	78177213	.	TACACAC	TACAC,TAC,TACACACAC,T	1561.22	PASS	AC=1,1,0,0;AF=0.795,0.08,0.034,0.023;AN=2;DP=2458;set=Intersection	GT:DP:GQ:SB	2/1:40:99:0,0,27,13
chr1	78178976	.	T	A	772.61	PASS	AC=2;AF=0.674;AN=2;DP=1529;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant19-variant20-variant21-variant24-variant25-variant26-variant29-variant32-variant33-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1583,159,0:0,0,17,36
chr1	78184325	.	A	G	376.08	PASS	AC=2;AF=0.7;AN=2;DP=706;MQ=60;set=variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant19-variant20-variant21-variant24-variant26-variant29-variant32-variant33-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1029,108,0:0,0,16,20
chr1	78200005	.	T	C	277.1	PASS	AC=2;AF=0.708;AN=2;DP=330;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:415,36,0:0,0,9,3
chr1	78201745	.	G	T	718.14	PASS	AC=2;AF=0.667;AN=2;DP=2337;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,55:57:99:1541,121,0:1,1,25,30
chr1	78206682	.	A	C	106.77	PASS	AC=1;AF=0.625;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant10-variant11-variant13-variant19-variant21-variant24-variant26-variant28-variant32-variant33-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:187,0,152:0,4,1,5
chr1	78342226	.	T	C	1415.55	PASS	AC=1;AF=0.5;AN=2;DP=125;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.057;QD=11.32;ReadPosRankSum=0.26;SOR=0.641;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,58:125:99:1444,0,1714:39,28,33,25
chr1	78343839	.	G	A	314.44	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=6.864;FractionInformativeReads=1;MQ=60;MQRankSum=-0.53;QD=17.47;ReadPosRankSum=1.236;SOR=3.516;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:343,0,227:3,6,0,9
chr1	78382018	.	T	C	561.95	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=3.463;FractionInformativeReads=1;MQ=60;MQRankSum=-0.25;QD=16.06;ReadPosRankSum=-1.65;SOR=1.491;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:590,0,371:5,10,4,16
chr1	78383467	.	G	A	198.37	PASS	AC=1;AF=0.869;AN=2;DP=745;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:59:285,0,59:1,2,2,7
chr1	78390046	.	C	CA,CAA	192.01	PASS	AC=1,0;AF=0.825,0.013;AN=2;DP=1737;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:53:99:10,12,15,16
chr1	78390161	.	G	A	245.91	PASS	AC=1;AF=0.5;AN=2;DP=61;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant21-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:257,0,136:1,4,0,7
chr1	78399212	.	T	C	541.31	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant21-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,18:24:99:446,0,104:2,4,7,11
chr1	78408055	.	TA	T	93.92	PASS	AC=1;AF=0.5;AN=2;DP=42;MQ=60;set=variant21-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:112,0,111:1,4,4,1
chr1	78408536	.	C	G	964.05	PASS	AC=1;AF=0.611;AN=2;DP=521;FractionInformativeReads=1;set=variant-variant5-variant11-variant13-variant21-variant25-variant32-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,28:48:99:849,0,590:10,10,19,9
chr1	78408931	.	A	AC	4507.32	PASS	AC=1;AF=0.5;AN=2;DP=293;FS=1.416;FractionInformativeReads=0.962;MQ=60;MQRankSum=-0.059;QD=15.38;ReadPosRankSum=-0.547;SOR=0.783;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:142,140:282:99:4545,0,4644:67,75,63,77
chr1	78409359	.	C	T	2262.42	PASS	AC=1;AF=0.5;AN=2;DP=175;FS=0.564;FractionInformativeReads=1;MQ=60;MQRankSum=0.803;QD=12.93;ReadPosRankSum=3.431;SOR=0.628;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:82,93:175:99:2291,0,1990:49,33,54,39
chr1	78414310	.	CA	C,CAA	383.11	PASS	AC=1,0;AF=0.352,0.148;AN=2;DP=9486;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:171:99:81,46,32,12
chr1	78422436	.	T	TCACA	338.1	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=3.528;FractionInformativeReads=0.792;MQ=59.64;MQRankSum=0.966;QD=7.04;ReadPosRankSum=0.193;SOR=1.639;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,11:38:99:375,0,1375:10,17,2,9
chr1	78426284	.	T	C	135.18	PASS	AC=2;AF=0.75;AN=2;DP=94;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant11-variant13-variant15-variant21-variant25-variant29-variant30-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:128,12,0:0,0,1,3
chr1	78430689	.	A	AG	2765.93	PASS	AC=2;AF=1;AN=2;DP=3589;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2421,201,0:0,0,38,29
chr1	78432503	.	G	C	1132.21	PASS	AC=2;AF=0.7;AN=2;DP=698;MQ=60;set=variant-variant3-variant5-variant11-variant13-variant15-variant21-variant25-variant29-variant30-variant32-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2070,181,0:0,0,31,28
chr1	78432506	.	TA	TAA,T	404.27	PASS	AC=1,0;AF=0.556,0.056;AN=2;DP=425;MQ=60;set=variant-variant5-variant11-variant13-variant21-variant25-variant32-variant33-variant41	GT:DP:GQ:SB	0/1:55:99:10,16,15,14
chr1	78433801	.	T	C	930.84	PASS	AC=1;AF=0.5;AN=2;DP=478;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant21-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,35:76:99:864,0,975:21,20,21,14
chr1	78470634	.	C	T	849.78	PASS	AC=1;AF=0.5;AN=2;DP=232;MQ=60;set=variant13-variant21-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:733,0,596:15,4,17,9
chr1	78482045	.	T	A	2880.78	PASS	AC=1;AF=0.5;AN=2;DP=305;FS=1.396;FractionInformativeReads=0.997;MQ=60;MQRankSum=2.138;QD=9.45;ReadPosRankSum=1.476;SOR=0.787;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:184,120:304:99:2909,0,4432:87,97,54,66
chr1	78482159	.	G	T	1541.79	PASS	AC=1;AF=0.5;AN=2;DP=151;FS=0.628;FractionInformativeReads=1;MQ=60;MQRankSum=0.986;QD=10.21;ReadPosRankSum=-0.063;SOR=0.786;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,59:151:99:1570,0,2428:38,54,23,36
chr1	78483452	.	C	CT,CTT	1096.43	PASS	AC=0,1;AF=0.464,0.036;AN=2;DP=7713;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:118:99:30,43,15,30
chr1	78512053	.	CCGCCGCGCCG	C	1379.61	PASS	AC=1;AF=0.5;AN=2;DP=404;MQ=60;set=variant3-variant13-variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,24:61:99:898,0,3971:13,24,9,15
chr1	78578177	.	T	C	2425.27	PASS	AC=2;AF=0.595;AN=2;DP=3557;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant15-variant16-variant19-variant21-variant27-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3968,369,0:0,0,61,62
chr1	78578266	.	C	T	1044.76	PASS	AC=2;AF=0.571;AN=2;DP=430;MQ=60;set=variant3-variant15-variant21-variant30-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2363,198,0:0,0,16,50
chr1	78602292	.	CTTTTT	CTTTT,CTTTTTTT,C,CT,CTTTTTT,CTTTTTTTT,CTTT,CTT	532.37	PASS	AC=0,0,0,0,0,0,0,1;AF=0.056,0.125,0.111,0.125,0.042,0.014,0.069,0.028;AN=2;DP=4313;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/8:86:99:18,34,11,23
chr1	78602461	.	A	T	5476.15	PASS	AC=2;AF=1;AN=2;DP=7850;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4956,447,0:0,0,93,56
chr1	78769675	.	A	T	237.93	PASS	AC=1;AF=0.5;AN=2;DP=96;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant13-variant14-variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:396,0,247:3,7,4,11
chr1	78864874	.	G	A	96.64	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.529;QD=8.05;ReadPosRankSum=0.244;SOR=0.412;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:125,0,254:1,6,1,4
chr1	79093818	.	A	G	1650.31	PASS	AC=1;AF=0.537;AN=2;DP=1854;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:836,0,847:13,16,17,16
chr1	79094081	.	T	A	580.19	PASS	AC=1;AF=0.537;AN=2;DP=406;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:195,0,232:2,4,2,5
chr1	79094593	.	A	G	1392.26	PASS	AC=2;AF=0.977;AN=2;DP=2705;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1639,168,0:0,0,26,30
chr1	79095339	.	A	C	1803.03	PASS	AC=1;AF=0.537;AN=2;DP=1627;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,21:56:99:585,0,1012:25,10,17,4
chr1	79095581	.	T	C	2448.66	PASS	AC=1;AF=0.525;AN=2;DP=1532;MQ=60;set=variant2-variant8-variant10-variant11-variant12-variant13-variant17-variant19-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,45:73:99:1336,0,862:10,18,18,27
chr1	79106899	.	T	C	2444.57	PASS	AC=1;AF=0.537;AN=2;DP=2227;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,24:72:99:521,0,1287:15,33,10,14
chr1	79121003	.	T	G	620.22	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=1.216;FractionInformativeReads=1;MQ=60;MQRankSum=0.201;QD=14.77;ReadPosRankSum=0.101;SOR=1.11;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:648,0,579:11,10,13,8
chr1	79128320	.	A	G	292.2	PASS	AC=2;AF=0.588;AN=2;DP=514;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:734,51,0:0,0,15,2
chr1	79128570	.	G	GT	1498.57	PASS	AC=2;AF=0.586;AN=2;DP=4270;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,105:107:99:4202,247,0:1,1,35,70
chr1	79355596	.	A	G	4165.27	PASS	AC=2;AF=0.786;AN=2;DP=5121;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3167,287,0:0,0,55,41
chr1	79355911	.	A	C	832.82	PASS	AC=2;AF=1;AN=2;DP=1524;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1202,111,0:0,0,21,16
chr1	79358743	.	CA	C,CAA,CAAA,CAAAA	531.01	PASS	AC=0,0,1,0;AF=0.129,0.226,0.145,0.065;AN=2;DP=784;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant27-variant30-variant31-variant32-filterInvariant33-variant35-variant36-variant37-variant39-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/3:16:75:2,2,10,2
chr1	79383300	.	CA	C	469.04	PASS	AC=1;AF=0.703;AN=2;DP=1114;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:667,0,441:11,4,10,11
chr1	79383458	.	A	T	1388.73	PASS	AC=1;AF=0.743;AN=2;DP=3347;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,51:92:99:1222,0,1024:23,18,31,20
chr1	79385807	.	T	C	421.62	PASS	AC=1;AF=0.5;AN=2;DP=66;FractionInformativeReads=1;MQ=60;set=variant7-variant22-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:211,0,282:7,1,6,0
chr1	79392756	.	C	A	849.37	PASS	AC=1;AF=0.743;AN=2;DP=2874;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,32:68:99:807,0,943:13,23,12,20
chr1	79401927	.	A	G	940.12	PASS	AC=1;AF=0.743;AN=2;DP=1790;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:477,0,327:9,6,13,8
chr1	79403751	.	T	G	1553.34	PASS	AC=1;AF=0.714;AN=2;DP=4303;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,48:96:99:1110,0,1180:21,27,21,27
chr1	79411888	.	T	C	867.81	PASS	AC=1;AF=0.726;AN=2;DP=593;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:255,0,271:7,0,6,2
chr1	79411918	.	A	G	519.34	PASS	AC=1;AF=0.5;AN=2;DP=178;FractionInformativeReads=1;MQ=60;set=variant7-variant22-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:408,0,339:9,1,10,4
chr1	79472141	.	C	A	570.93	PASS	AC=1;AF=0.788;AN=2;DP=2084;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:582,0,447:12,4,15,8
chr1	81910596	.	A	G	1852.49	PASS	AC=2;AF=0.571;AN=2;DP=772;MQ=60;set=variant3-variant5-variant6-variant13-variant15-variant19-variant20-variant26-variant28-variant33-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2438,166,0:0,0,43,11
chr1	81910606	.	T	G	2165.45	PASS	AC=2;AF=0.6;AN=2;DP=682;MQ=60;set=variant3-variant13-variant19-variant20-variant26-variant28-variant33-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2738,193,0:0,0,50,14
chr1	81967466	.	T	TCAG	666.26	PASS	AC=1;AF=0.545;AN=2;DP=653;set=variant7-variant10-variant13-variant18-variant20-variant32-variant33-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:663,0,863:15,8,8,10
chr1	81967558	.	A	C	976.92	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=0;FractionInformativeReads=1;MQ=58.51;MQRankSum=1.469;QD=10.28;ReadPosRankSum=-1.2;SOR=0.678;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,43:95:99:1005,0,1245:28,24,23,20
chr1	81970883	.	CCACACA	CCA,CCACACACA,CCACA,C	124.73	PASS	AC=1,0,0,0;AF=0.286,0.095,0.143,0.071;AN=2;DP=205;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant31-variant35-variant37-variant39-variant41	GT:DP:GQ:SB	0/1:8:99:1,2,4,1
chr1	82227391	.	T	TA	901.28	PASS	AC=1;AF=0.632;AN=2;DP=1457;MQ=60;set=variant-variant2-variant4-variant6-variant10-variant11-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:581,0,579:11,6,13,4
chr1	82302403	.	T	C	1204.34	PASS	AC=1;AF=0.583;AN=2;DP=737;MQ=60;set=variant2-variant13-variant14-variant16-variant20-variant21-variant27-variant31-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,39:70:99:1315,0,870:24,7,36,3
chr1	82402364	.	TAATC	T	502.54	PASS	AC=1;AF=0.556;AN=2;DP=916;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:501,0,819:10,5,10,3
chr1	82415814	.	T	C	1316.62	PASS	AC=2;AF=1;AN=2;DP=1907;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1725,150,0:0,0,36,14
chr1	82416220	.	G	A	265.16	PASS	AC=1;AF=0.707;AN=2;DP=1181;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:388,0,348:3,9,3,10
chr1	82417552	.	T	G	747.46	PASS	AC=1;AF=0.703;AN=2;DP=579;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:256,0,235:6,1,7,0
chr1	82421596	.	C	T	2985.77	PASS	AC=2;AF=1;AN=2;DP=4861;FS=0;MQ=60;MQRankSum=-0.763;ReadPosRankSum=-0.587;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3223,315,0:0,0,56,49
chr1	82437670	.	ATTTGT	A	442.16	PASS	AC=1;AF=0.563;AN=2;DP=556;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant30-variant33-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:231,0,708:1,6,1,5
chr1	82437682	.	G	A	454.14	PASS	AC=1;AF=0.563;AN=2;DP=469;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant30-variant33-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:234,0,640:1,5,1,5
chr1	82450194	.	C	A	1001.85	PASS	AC=1;AF=0.571;AN=2;DP=427;MQ=60;set=variant3-variant4-variant17-variant29-variant32-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:635,0,555:13,7,16,5
chr1	82450758	.	C	T	186.2	PASS	AC=1;AF=0.571;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant17-variant29-variant32-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:231,0,230:6,2,6,2
chr1	82450844	.	C	G	842.94	PASS	AC=1;AF=0.571;AN=2;DP=396;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant17-variant29-variant32-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,15:40:99:312,0,637:15,10,8,7
chr1	82457662	.	G	A	6658.85	PASS	AC=2;AF=1;AN=2;DP=8855;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4994,467,0:0,0,72,84
chr1	82458170	.	C	T	1709.43	PASS	AC=1;AF=0.571;AN=2;DP=634;MQ=60;set=variant3-variant4-variant17-variant29-variant32-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,44:87:99:1169,0,1292:11,32,12,32
chr1	84330635	.	CGTGT	CGTGTGTGT,CGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGT,CGTGTGT,C,CGTGTGTGTGTGT,CGT,CGTGTGTGTGTGTGTGT	157.51	PASS	AC=0,0,0,1,0,0,0,0,0;AF=0.163,0.063,0.013,0.113,0.138,0.038,0.163,0.05,0.05;AN=2;DP=890;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:29:99:17,2,10,0
chr1	84331981	.	A	G	575.49	PASS	AC=1;AF=0.649;AN=2;DP=2562;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,38:61:99:991,0,631:14,9,20,18
chr1	84332235	.	A	G	4149.43	PASS	AC=2;AF=0.829;AN=2;DP=13511;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,310:311:99:9651,904,0:1,0,168,142
chr1	84333213	.	T	TTG,TTGTG	2079.08	PASS	AC=1,0;AF=0.618,0.013;AN=2;DP=8077;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:167:99:40,49,32,46
chr1	84333301	.	G	A	2479.7	PASS	AC=1;AF=0.645;AN=2;DP=4601;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,68:145:99:2536,0,3153:36,41,31,37
chr1	84333310	.	C	T	2631.03	PASS	AC=1;AF=0.645;AN=2;DP=4668;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,67:145:99:2523,0,3111:37,41,30,37
chr1	84335412	.	C	T	735.28	PASS	AC=1;AF=0.559;AN=2;DP=1070;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant11-variant12-variant13-variant18-variant20-variant23-variant25-variant27-variant33-variant35-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:672,0,617:9,13,12,13
chr1	84355734	.	AAGAACTTCAAGGAT	A	670.65	PASS	AC=1;AF=0.645;AN=2;DP=1648;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,10:42:99:324,0,4834:13,19,2,8
chr1	84383079	.	G	A	811.73	PASS	AC=1;AF=0.65;AN=2;DP=1221;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,21:34:99:568,0,372:11,2,15,6
chr1	84399485	.	T	C	643.39	PASS	AC=1;AF=0.5;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:332,0,406:5,10,2,8
chr1	84464468	.	C	G	349.71	PASS	AC=1;AF=0.65;AN=2;DP=809;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:335,0,376:10,3,6,5
chr1	84640691	.	T	G	2281.91	PASS	AC=2;AF=0.989;AN=2;DP=2996;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1176,126,0:0,0,20,22
chr1	84640834	.	T	G	46.72	PASS	AC=1;AF=0.64;AN=2;DP=263;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:78:78,0,86:0,3,2,2
chr1	84670439	.	A	AC	102.02	PASS	AC=1;AF=0.657;AN=2;DP=593;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,18:26:99:675,0,485:4,4,8,10
chr1	84670457	.	A	G	76.67	PASS	AC=1;AF=0.662;AN=2;DP=607;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,16:25:99:636,0,523:5,4,8,8
chr1	84670584	.	T	A	373.02	PASS	AC=1;AF=0.657;AN=2;DP=1091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,20:28:99:523,0,197:5,3,12,8
chr1	84670816	.	A	C	4326.47	PASS	AC=1;AF=0.662;AN=2;DP=11253;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:150,142:292:99:3357,0,3728:80,70,77,65
chr1	84701251	.	T	C	14146.6	PASS	AC=2;AF=0.845;AN=2;DP=15778;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,385:386:99:12037,1146,0:1,0,221,164
chr1	84701449	.	G	C	2232.07	PASS	AC=1;AF=0.5;AN=2;DP=828;MQ=60;set=variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:168,137:305:99:3671,0,4510:66,102,47,90
chr1	84768465	.	C	A	128.04	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=6.154;FractionInformativeReads=1;MQ=60;MQRankSum=-0.278;QD=11.64;ReadPosRankSum=-1.398;SOR=1.447;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:156,0,146:3,1,2,5
chr1	84791239	.	T	C	147.98	PASS	AC=2;AF=0.939;AN=2;DP=341;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:229,18,0:0,0,4,2
chr1	84810396	.	A	C	621.51	PASS	AC=2;AF=0.886;AN=2;DP=658;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:558,48,0:0,0,11,5
chr1	84810815	.	A	G	4618.04	PASS	AC=2;AF=0.977;AN=2;DP=5495;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3236,297,0:0,0,45,54
chr1	84816123	.	C	T	1237.72	PASS	AC=2;AF=0.966;AN=2;DP=2037;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1224,102,0:0,0,26,8
chr1	84816587	.	A	C	106.77	PASS	AC=2;AF=0.956;AN=2;DP=152;FS=0;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:261,21,0:0,0,1,6
chr1	84853957	.	A	T	941.07	PASS	AC=2;AF=0.977;AN=2;DP=2295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1206,120,0:0,0,26,14
chr1	84873835	.	A	G	1517.6	PASS	AC=1;AF=0.686;AN=2;DP=2079;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,31:63:99:784,0,784:21,11,21,10
chr1	84874242	.	C	G	746.03	PASS	AC=1;AF=0.567;AN=2;DP=2593;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,40:98:99:942,0,1544:19,39,15,25
chr1	84876711	.	C	CA	2151.3	PASS	AC=1;AF=0.686;AN=2;DP=2162;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,35:70:99:1202,0,1168:11,24,11,24
chr1	84876731	.	T	G	1075.19	PASS	AC=1;AF=0.686;AN=2;DP=1551;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:728,0,752:9,19,10,19
chr1	84878380	.	A	G	1010.64	PASS	AC=2;AF=1;AN=2;DP=2168;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1189,120,0:0,0,19,21
chr1	84880380	.	T	C	1582.98	PASS	AC=1;AF=0.583;AN=2;DP=3358;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,44:92:99:1249,0,1413:27,21,28,16
chr1	84880775	.	T	C	1010.5	PASS	AC=2;AF=1;AN=2;DP=1678;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1578,111,0:0,0,1,36
chr1	84944907	.	A	AG	1418.06	PASS	AC=1;AF=0.5;AN=2;DP=157;MQ=60;set=variant2-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,29:70:99:710,0,1095:19,22,19,10
chr1	84944989	.	A	G	606.02	PASS	AC=1;AF=0.713;AN=2;DP=2255;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:730,0,920:20,11,12,15
chr1	84946619	.	C	CT	1781.62	PASS	AC=1;AF=0.6;AN=2;DP=304;MQ=60;set=variant2-variant5-variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:631,0,633:15,13,14,14
chr1	84946745	.	C	T	904.12	PASS	AC=2;AF=0.989;AN=2;DP=1124;MQ=60;MQRankSum=-0.488;ReadPosRankSum=-0.387;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:697,60,0:0,0,5,15
chr1	84948540	.	A	G	1268.63	PASS	AC=1;AF=0.6;AN=2;DP=191;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:522,0,451:12,7,14,7
chr1	84956161	.	C	CT	4187.41	PASS	AC=1;AF=0.688;AN=2;DP=1272;MQ=60;set=variant2-variant5-variant13-variant18-variant31-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,69:151:99:1390,0,1771:38,44,26,43
chr1	84961108	.	G	A	3909.72	PASS	AC=1;AF=0.6;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,47:98:99:1250,0,1440:17,34,18,29
chr1	84963000	.	A	G	858.28	PASS	AC=1;AF=0.58;AN=2;DP=1121;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant21-variant24-variant26-variant28-variant30-variant32-variant34-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:804,0,539:12,6,19,8
chr1	84971819	.	G	A	14498.3	PASS	AC=1;AF=0.6;AN=2;DP=1654;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:177,154:331:99:5612,0,8183:94,83,91,63
chr1	84971833	.	G	C	15286.9	PASS	AC=1;AF=0.688;AN=2;DP=2733;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant13-variant18-variant31-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:175,168:343:99:5991,0,8144:91,84,95,73
chr1	84971969	.	G	T	5559.79	PASS	AC=1;AF=0.688;AN=2;DP=1598;MQ=60;set=variant2-variant5-variant13-variant18-variant31-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,95:176:99:2484,0,1970:36,45,34,61
chr1	84972059	.	C	G	1764.8	PASS	AC=1;AF=0.688;AN=2;DP=530;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant13-variant18-variant31-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:885,0,1037:11,22,7,23
chr1	84972277	.	G	C	206.16	PASS	AC=1;AF=0.75;AN=2;DP=76;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant13-variant18-variant31-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:134,0,195:1,5,1,4
chr1	84982259	.	T	C	475.99	PASS	AC=1;AF=0.577;AN=2;DP=774;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant21-variant24-variant26-variant28-variant30-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:347,0,312:6,8,7,9
chr1	84986213	.	AT	A	222.41	PASS	AC=2;AF=0.955;AN=2;DP=1071;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:745,78,0:0,0,20,6
chr1	84986412	.	G	T	2051.21	PASS	AC=1;AF=0.6;AN=2;DP=318;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,34:60:99:927,0,636:9,17,11,23
chr1	84991669	.	G	C	2311.9	PASS	AC=1;AF=0.583;AN=2;DP=416;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant18-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,39:74:99:984,0,841:17,18,23,16
chr1	84998445	.	C	G	284.64	PASS	AC=1;AF=0.6;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant10-variant13-variant14-variant16-variant18-variant21-variant24-variant26-variant31-variant34-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:272,0,132:3,2,6,1
chr1	84999571	.	T	C	284.4	PASS	AC=1;AF=0.6;AN=2;DP=278;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant10-variant13-variant14-variant16-variant18-variant21-variant24-variant26-variant31-variant34-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:281,0,146:0,5,1,7
chr1	85011154	.	C	T	764.57	PASS	AC=1;AF=0.6;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:177,0,408:9,3,5,2
chr1	85016112	.	C	T	1562.13	PASS	AC=1;AF=0.667;AN=2;DP=360;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant18-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,18:48:99:425,0,716:19,11,9,9
chr1	85016177	.	A	G	808.73	PASS	AC=1;AF=0.6;AN=2;DP=1919;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant21-variant24-variant26-variant28-variant30-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,36:75:99:808,0,881:19,20,16,20
chr1	85018648	.	C	T	1326.71	PASS	AC=1;AF=0.667;AN=2;DP=261;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant18-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:540,0,443:10,8,14,6
chr1	85019924	.	T	TG	2572.61	PASS	AC=1;AF=0.667;AN=2;DP=351;MQ=60;set=variant2-variant10-variant18-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:577,0,804:16,9,13,6
chr1	85020637	.	G	T	5550.18	PASS	AC=1;AF=0.667;AN=2;DP=1104;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant18-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:105,86:191:99:2224,0,2837:58,47,49,37
chr1	85020649	.	C	T	5941.71	PASS	AC=1;AF=0.667;AN=2;DP=1196;MQ=60;set=variant2-variant10-variant18-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:108,92:200:99:2356,0,2695:61,47,54,38
chr1	85036239	.	C	G	1735.15	PASS	AC=1;AF=0.6;AN=2;DP=2467;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant10-variant13-variant14-variant16-variant18-variant21-variant24-variant26-variant31-variant34-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,49:109:99:1189,0,1342:32,28,28,21
chr1	85039998	.	CGCAGCGCCA	C	953.31	PASS	AC=1;AF=0.575;AN=2;DP=2950;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant10-variant13-variant16-variant18-variant21-variant24-variant26-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,48:105:99:1788,0,4975:19,38,16,32
chr1	85094292	.	TGC	T	328.42	PASS	AC=1;AF=0.674;AN=2;DP=1238;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,28:32:33:789,0,33:1,3,13,15
chr1	85095078	.	A	T	415.28	PASS	AC=1;AF=0.563;AN=2;DP=379;MQ=60;set=variant2-variant8-variant11-variant18-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:746,0,876:19,9,17,10
chr1	85095457	.	G	A	579.88	PASS	AC=1;AF=0.571;AN=2;DP=321;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant11-variant18-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:474,0,561:11,12,12,11
chr1	85096589	.	T	G	1089.07	PASS	AC=1;AF=0.563;AN=2;DP=702;MQ=60;set=variant2-variant8-variant11-variant18-variant35-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,34:71:99:940,0,1008:14,23,13,21
chr1	85110325	.	C	A	1867.36	PASS	AC=1;AF=0.93;AN=2;DP=2587;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:647,0,652:16,6,14,8
chr1	85113203	.	T	C	4118.59	PASS	AC=1;AF=0.881;AN=2;DP=5255;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,52:115:99:1391,0,1770:26,37,18,34
chr1	85113229	.	A	G	1543.68	PASS	AC=1;AF=0.688;AN=2;DP=4490;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,51:107:99:1321,0,1472:24,32,17,34
chr1	85115852	.	G	T	10433.3	PASS	AC=1;AF=0.881;AN=2;DP=12804;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:175,158:333:99:3966,0,4609:92,83,89,69
chr1	85121097	.	A	G	386.09	PASS	AC=1;AF=0.5;AN=2;DP=155;FractionInformativeReads=1;MQ=60;set=variant3-variant15-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,21:37:99:578,0,477:13,3,14,7
chr1	85121255	.	A	G	651.58	PASS	AC=1;AF=0.688;AN=2;DP=2523;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:740,0,910:11,23,12,19
chr1	85123819	.	A	G	66.22	PASS	AC=1;AF=0.946;AN=2;DP=126;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.937;set=variant2-variant3-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:156,0,107:3,0,4,0
chr1	85128262	.	A	G	1127.31	PASS	AC=1;AF=0.774;AN=2;DP=2735;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:750,0,796:7,20,9,20
chr1	85128280	.	T	C	1810.49	PASS	AC=1;AF=0.93;AN=2;DP=2175;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:560,0,584:5,15,2,15
chr1	85128305	.	G	C	582.67	PASS	AC=1;AF=0.688;AN=2;DP=1297;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:319,0,479:2,12,0,9
chr1	85131982	.	T	G	435.13	PASS	AC=1;AF=0.93;AN=2;DP=601;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:321,0,105:1,3,0,8
chr1	85277723	.	C	A	2066.31	PASS	AC=1;AF=0.5;AN=2;DP=237;FS=0;FractionInformativeReads=0.996;MQ=60;MQRankSum=-0.958;QD=8.72;ReadPosRankSum=3.368;SOR=0.725;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:137,99:236:99:2095,0,3415:62,75,44,55
chr1	85278081	.	CAT	C	364.57	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.705;QD=22.79;ReadPosRankSum=0.813;SOR=0.534;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:402,0,250:2,4,4,6
chr1	85278665	.	A	G	772.18	PASS	AC=1;AF=0.762;AN=2;DP=1336;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,30:42:99:874,0,213:5,7,12,18
chr1	85278809	.	AATATATATATATATATATAT	A	1384.95	PASS	AC=2;AF=1;AN=2;DP=35;FS=0;FractionInformativeReads=0.971;MQ=60;MQRankSum=0.612;QD=24.77;ReadPosRankSum=1.631;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:1,33:34:49:1422,49,0:1,0,24,9
chr1	85278843	.	GACAC	GAC,G	348.14	PASS	AC=1,0;AF=0.733,0.017;AN=2;DP=642;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:55:99:6,2,31,16
chr1	85278952	.	T	TTAAG	9889.36	PASS	AC=1;AF=0.762;AN=2;DP=7813;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,109:191:99:4489,0,4344:57,25,62,47
chr1	85279077	.	C	T	12731.2	PASS	AC=1;AF=0.833;AN=2;DP=15838;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:207,177:384:99:4086,0,4877:102,105,82,95
chr1	85331808	.	G	GAGA	2843.91	PASS	AC=2;AF=0.841;AN=2;DP=3291;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2954,198,0:0,0,19,45
chr1	85391899	.	A	G	1278.31	PASS	AC=2;AF=0.989;AN=2;DP=1706;FS=0;MQ=60;MQRankSum=-1.279;ReadPosRankSum=-3.767;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1387,113,0:0,0,32,6
chr1	85392161	.	A	G	2336.57	PASS	AC=1;AF=0.5;AN=2;DP=181;FS=1.841;FractionInformativeReads=0.994;MQ=60;MQRankSum=0.9;QD=12.91;ReadPosRankSum=-1.904;SOR=0.534;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:90,90:180:99:2365,0,2381:41,49,45,45
chr1	85395136	.	C	T	1161.55	PASS	AC=1;AF=0.5;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1190,0,1444:38,16,33,14
chr1	85397286	.	G	C	849.67	PASS	AC=2;AF=0.611;AN=2;DP=1335;MQ=60;set=variant-variant3-variant6-variant9-variant15-variant20-variant21-variant24-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,68:70:99:2063,161,0:1,1,23,45
chr1	85412941	.	C	G	569.83	PASS	AC=1;AF=0.5;AN=2;DP=70;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:598,0,613:11,12,6,16
chr1	85417779	.	G	A	158.16	PASS	AC=2;AF=0.719;AN=2;DP=394;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:469,36,0:0,0,11,1
chr1	85418307	.	C	G	340.83	PASS	AC=2;AF=0.719;AN=2;DP=1689;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1476,129,0:0,0,11,32
chr1	85422061	.	C	T	1894.6	PASS	AC=2;AF=0.688;AN=2;DP=4973;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,135:136:99:4171,371,0:1,0,74,61
chr1	85424182	.	A	G	1120.24	PASS	AC=2;AF=0.646;AN=2;DP=1323;MQ=60;set=variant-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1583,147,0:0,0,31,18
chr1	85424479	.	A	G	46.72	PASS	AC=2;AF=0.711;AN=2;DP=111;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant12-variant13-variant15-variant18-variant21-variant22-variant23-variant24-variant26-variant31-variant33-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:214,15,0:0,0,0,5
chr1	85462582	.	C	G	1039.52	PASS	AC=2;AF=0.707;AN=2;DP=3153;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2984,279,0:0,0,37,56
chr1	85462652	.	G	T	806.75	PASS	AC=2;AF=0.707;AN=2;DP=1621;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2336,162,0:0,0,21,32
chr1	85462665	.	T	G	776.79	PASS	AC=2;AF=0.707;AN=2;DP=1440;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2195,156,0:0,0,20,30
chr1	85462750	.	T	C	468.11	PASS	AC=2;AF=0.955;AN=2;DP=963;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:743,66,0:0,0,6,16
chr1	85464736	.	C	G	107.65	PASS	AC=2;AF=0.75;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant17-variant21-variant22-variant23-variant31-variant35-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:148,18,0:0,0,3,3
chr1	85464843	.	T	A	94.28	PASS	AC=2;AF=0.707;AN=2;DP=603;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:584,54,0:0,0,11,7
chr1	85465026	.	G	A	64.65	PASS	AC=2;AF=0.652;AN=2;DP=575;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant30-variant31-variant33-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:428,48,0:0,0,8,8
chr1	85484366	.	A	G	2332.16	PASS	AC=2;AF=0.83;AN=2;DP=3228;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2186,206,0:0,0,36,33
chr1	85484473	.	C	T	2514.43	PASS	AC=2;AF=0.756;AN=2;DP=4328;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2840,279,0:0,0,46,47
chr1	85488030	.	G	A	3432.72	PASS	AC=2;AF=0.83;AN=2;DP=4963;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3207,332,0:0,0,49,62
chr1	85488154	.	G	C	583.31	PASS	AC=2;AF=0.955;AN=2;DP=988;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:681,51,0:0,0,2,15
chr1	85490762	.	C	T	487.81	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=1.022;FractionInformativeReads=1;MQ=60;MQRankSum=0.071;QD=8.27;ReadPosRankSum=0.135;SOR=0.869;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,21:59:99:516,0,1138:18,20,9,12
chr1	85507074	.	G	T	196.77	PASS	AC=2;AF=1;AN=2;DP=430;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.666;ReadPosRankSum=1.179;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,7:9:7:200,7,0:0,2,2,5
chr1	85514282	.	T	C	87.14	PASS	AC=2;AF=0.656;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant12-variant15-variant17-variant21-variant22-variant23-variant24-variant31-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:397,33,0:0,0,3,8
chr1	85527974	.	G	A	619.4	PASS	AC=2;AF=0.886;AN=2;DP=1410;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:751,75,0:0,0,12,13
chr1	85528006	.	C	A	199.69	PASS	AC=1;AF=0.625;AN=2;DP=927;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant31-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:352,0,292:2,7,6,8
chr1	85537502	.	T	A	376.59	PASS	AC=2;AF=0.86;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:347,24,0:0,0,8,0
chr1	85537522	.	T	C	713.3	PASS	AC=2;AF=0.852;AN=2;DP=826;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:581,51,0:0,0,14,3
chr1	85538655	.	A	AAAG,AG,AAG	126.53	PASS	AC=2,0,0;AF=0.231,0.5,0.115;AN=2;DP=159;set=variant-variant2-variant3-variant7-variant17-variant22-variant24-variant25-variant29-variant35-variant36-variant38-variant41	GT:DP:GQ:SB	1/1:9:36:0,0,5,4
chr1	85538879	.	G	A	356.14	PASS	AC=1;AF=0.633;AN=2;DP=332;MQ=60;set=variant6-variant9-variant12-variant15-variant17-variant18-variant22-variant23-variant24-variant31-variant35-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:276,0,178:1,5,2,7
chr1	85547270	.	A	G	314.21	PASS	AC=1;AF=0.77;AN=2;DP=938;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:517,0,490:1,13,4,14
chr1	85547945	.	T	C	429.33	PASS	AC=1;AF=0.708;AN=2;DP=1219;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,28:41:99:738,0,300:9,4,19,9
chr1	85550156	.	AAT	AATAT,A	34.55	PASS	AC=0,1;AF=0.684,0.053;AN=2;DP=107;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant13-variant14-variant16-variant19-variant20-variant24-variant27-variant28-variant29-variant39-variant41-variant42	GT:DP:GQ:SB	0/2:4:7:2,0,1,1
chr1	85551468	.	A	ATCAGTTTTTCT	256.32	PASS	AC=1;AF=0.77;AN=2;DP=495;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:476,0,342:8,1,10,2
chr1	85555672	.	A	C	94.69	PASS	AC=1;AF=0.809;AN=2;DP=379;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:68:193,0,68:1,2,3,3
chr1	85559118	.	CT	C	1456.71	PASS	AC=1;AF=0.708;AN=2;DP=2270;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,31:63:99:775,0,804:24,8,20,11
chr1	85559452	.	A	G	3058.4	PASS	AC=1;AF=0.606;AN=2;DP=2848;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,42:95:99:1111,0,1471:26,27,18,24
chr1	85560264	.	G	A	1038.59	PASS	AC=1;AF=0.577;AN=2;DP=400;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant13-variant21-variant27-variant29-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:384,0,269:3,8,3,9
chr1	85560313	.	T	C	546.46	PASS	AC=1;AF=0.621;AN=2;DP=399;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:73:150,0,73:0,2,0,4
chr1	85561546	.	T	C	1568.45	PASS	AC=1;AF=0.621;AN=2;DP=1554;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,18:47:99:541,0,891:21,8,15,3
chr1	85563452	.	AAAAG	A	1087.73	PASS	AC=1;AF=0.577;AN=2;DP=379;MQ=60;set=variant-variant5-variant8-variant13-variant21-variant27-variant29-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,20:33:99:770,0,731:4,9,5,15
chr1	85564138	.	A	G	1552.49	PASS	AC=1;AF=0.621;AN=2;DP=1204;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,21:33:99:601,0,282:8,4,16,5
chr1	85573696	.	T	A	174.26	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=0.9;MQ=60;MQRankSum=1.683;QD=17.43;ReadPosRankSum=-1.422;SOR=0.804;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:202,0,186:2,1,4,2
chr1	85573705	.	A	AC,ACT	312.53	PASS	AC=1,0;AF=0.603,0.132;AN=2;DP=547;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:15:99:3,2,7,3
chr1	85574021	.	G	A	548.36	PASS	AC=1;AF=0.603;AN=2;DP=365;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:115,0,159:0,4,1,3
chr1	85583323	.	T	A	376.17	PASS	AC=1;AF=0.525;AN=2;DP=339;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant10-variant12-variant15-variant17-variant18-variant21-variant27-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:258,0,419:11,1,6,3
chr1	85589939	.	GT	G	1542.07	PASS	AC=1;AF=0.697;AN=2;DP=4780;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,63:118:99:1987,0,1696:23,32,19,44
chr1	85592126	.	G	T	640.93	PASS	AC=2;AF=0.977;AN=2;DP=664;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:406,33,0:0,0,9,2
chr1	85592280	.	C	T	578.57	PASS	AC=1;AF=0.5;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant10-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:723,0,879:18,19,18,13
chr1	85592334	.	A	G	1049.59	PASS	AC=1;AF=0.5;AN=2;DP=179;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,47:83:99:1130,0,797:20,16,23,24
chr1	85594466	.	G	A	2024.6	PASS	AC=1;AF=0.525;AN=2;DP=1192;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant10-variant12-variant13-variant17-variant18-variant21-variant27-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,34:61:99:818,0,668:9,18,17,17
chr1	85595645	.	C	T	1497.69	PASS	AC=1;AF=0.684;AN=2;DP=4973;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,67:135:99:1781,0,1772:42,26,46,21
chr1	85595911	.	G	T	1047.48	PASS	AC=1;AF=0.5;AN=2;DP=259;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:90,48:138:99:1266,0,2355:36,54,12,36
chr1	85598527	.	TC	T	1272.66	PASS	AC=2;AF=1;AN=2;DP=2159;FS=0;MQRankSum=-0.675;ReadPosRankSum=-0.206;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1345,132,0:0,0,31,13
chr1	85599563	.	A	C	2058.82	PASS	AC=1;AF=0.548;AN=2;DP=1620;MQ=60;set=variant-variant5-variant8-variant10-variant12-variant13-variant17-variant18-variant21-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:787,0,779:20,13,21,11
chr1	85622543	.	A	G	75.22	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.825;QD=6.27;ReadPosRankSum=1.468;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:103,0,200:5,3,3,1
chr1	85624304	.	A	C	704.76	PASS	AC=1;AF=0.5;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,29:50:99:733,0,559:9,12,12,17
chr1	85624549	.	C	T	5973.41	PASS	AC=2;AF=1;AN=2;DP=6915;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4118,397,0:0,0,71,62
chr1	85624864	.	G	A	2357.4	PASS	AC=2;AF=1;AN=2;DP=3254;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1701,171,0:0,0,24,33
chr1	85647713	.	T	C	1362.19	PASS	AC=2;AF=1;AN=2;DP=1243;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:760,66,0:0,0,17,5
chr1	85648620	.	C	T	4029.58	PASS	AC=2;AF=1;AN=2;DP=5395;FS=0;MQ=60;MQRankSum=0.243;ReadPosRankSum=0.043;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2704,252,0:0,0,42,42
chr1	85648873	.	G	C	466.48	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.693;QD=11.66;ReadPosRankSum=1.291;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:495,0,672:7,15,5,13
chr1	85666156	.	T	G	2526.72	PASS	AC=1;AF=0.563;AN=2;DP=3338;MQ=60;set=variant6-variant9-variant10-variant11-variant15-variant16-variant18-variant19-variant22-variant24-variant31-variant33-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:93,87:180:99:2129,0,2330:44,49,39,48
chr1	85725353	.	GCCGGAAA	G	621.21	PASS	AC=1;AF=0.617;AN=2;DP=2409;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:1180,0,1485:14,15,10,21
chr1	85732065	.	A	G	1361.64	PASS	AC=2;AF=0.662;AN=2;DP=3111;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1679,158,0:0,0,33,20
chr1	85732941	.	A	C	4325.88	PASS	AC=2;AF=0.662;AN=2;DP=10466;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,266:266:99:7665,796,0:0,0,123,143
chr1	85741684	.	T	C	162.18	PASS	AC=1;AF=0.537;AN=2;DP=563;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:231,0,136:5,1,7,1
chr1	85741734	.	A	T	746.13	PASS	AC=1;AF=0.5;AN=2;DP=425;FractionInformativeReads=1;MQ=60;set=variant7-variant16-variant17-variant26-variant30-variant32-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:382,0,563:15,7,11,4
chr1	85741921	.	G	C	3889.75	PASS	AC=2;AF=0.872;AN=2;DP=6147;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3440,341,0:0,0,60,54
chr1	85741968	.	G	C	2236.39	PASS	AC=1;AF=0.5;AN=2;DP=1537;MQ=60;set=variant7-variant16-variant26-variant30-variant32-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,61:137:99:1673,0,1953:37,39,28,33
chr1	85742012	.	G	C	2178.77	PASS	AC=1;AF=0.537;AN=2;DP=5124;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,78:144:99:2141,0,1754:33,33,40,38
chr1	85742157	.	G	C	1226.3	PASS	AC=1;AF=0.5;AN=2;DP=927;FractionInformativeReads=1;MQ=60;set=variant7-variant16-variant17-variant26-variant30-variant32-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,47:96:99:1304,0,1460:21,28,17,30
chr1	85742338	.	G	C	3403.36	PASS	AC=2;AF=0.872;AN=2;DP=5123;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3609,335,0:0,0,57,55
chr1	85742860	.	T	A	1934.6	PASS	AC=1;AF=0.5;AN=2;DP=1054;set=variant7-variant16-variant17-variant26-variant30-variant32-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,58:107:99:2223,0,2762:9,40,18,40
chr1	85742861	.	C	A	1934.6	PASS	AC=1;AF=0.5;AN=2;DP=1031;FractionInformativeReads=1;set=variant7-variant16-variant17-variant26-variant30-variant32-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,58:107:99:2223,0,2762:9,40,18,40
chr1	85784281	.	C	T	3106.85	PASS	AC=1;AF=0.5;AN=2;DP=276;FS=2.62;FractionInformativeReads=1;MQ=60;MQRankSum=1.804;QD=11.26;ReadPosRankSum=-2.311;SOR=0.85;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:150,126:276:99:3135,0,3922:79,71,71,55
chr1	85785550	.	C	CA	6742.14	PASS	AC=2;AF=0.886;AN=2;DP=15466;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,297:297:99:12039,900,0:0,0,152,145
chr1	85785655	.	T	C	3328.88	PASS	AC=2;AF=0.756;AN=2;DP=9419;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6688,632,0:0,0,92,119
chr1	85785751	.	T	C	1400.9	PASS	AC=1;AF=0.614;AN=2;DP=2054;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant28-variant31-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,41:105:99:1205,0,2028:26,38,11,30
chr1	85786201	.	GA	G,GAA	204.21	PASS	AC=0,1;AF=0.438,0.063;AN=2;DP=967;MQ=60;set=filterInvariant8-variant16-variant30-filterInvariant37-filterInvariant38-variant39-variant41-variant44	GT:DP:GQ:SB	0/2:121:99:32,37,24,28
chr1	85786299	.	T	A	1422.51	PASS	AC=1;AF=0.568;AN=2;DP=1941;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant28-variant31-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,35:76:99:851,0,1091:17,24,13,22
chr1	85786748	.	GAAA	GAA,G,GA,GAAAA	665.54	PASS	AC=1,0,0,0;AF=0.397,0.026,0.09,0.026;AN=2;DP=6469;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:123:99:32,27,48,16
chr1	85786957	.	T	G,C	554.47	PASS	AC=1,0;AF=0.543,0.022;AN=2;DP=898;set=variant-variant2-filterInvariant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant28-variant31-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:34:99:6,10,8,10
chr1	85786977	.	G	A	209.13	PASS	AC=1;AF=0.568;AN=2;DP=681;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant28-variant31-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:540,0,287:5,5,8,11
chr1	85787114	.	A	T	1901.62	PASS	AC=2;AF=1;AN=2;DP=2974;FS=0;MQ=60;MQRankSum=0.073;ReadPosRankSum=1.635;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1805,185,0:0,0,36,26
chr1	85930272	.	GACAC	G,GAC,GACACAC	821.22	PASS	AC=0,1,0;AF=0.011,0.75,0.08;AN=2;DP=2144;set=Intersection	GT:DP:GQ:SB	0/2:27:99:4,13,3,7
chr1	86043770	.	G	T	1082.2	PASS	AC=1;AF=0.5;AN=2;DP=93;FS=0.784;FractionInformativeReads=1;MQ=60;MQRankSum=-1.664;QD=11.64;ReadPosRankSum=-1.041;SOR=0.833;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,46:93:99:1110,0,1321:21,26,19,27
chr1	86047311	.	G	C	1989	PASS	AC=1;AF=0.563;AN=2;DP=3186;MQ=60;set=variant5-variant7-variant9-variant11-variant13-variant14-variant17-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,78:158:99:2059,0,1967:39,41,36,42
chr1	86118445	.	C	A	535.21	PASS	AC=1;AF=0.5;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant20-variant24-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,30:53:99:1175,0,1490:19,4,22,8
chr1	86118447	.	A	G	2691.81	PASS	AC=1;AF=0.955;AN=2;DP=2589;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:1175,0,1490:20,4,22,9
chr1	86118587	.	A	T	1956.83	PASS	AC=1;AF=0.563;AN=2;DP=1549;MQ=60;set=variant9-variant11-variant20-variant24-variant27-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:114,81:195:99:1938,0,2919:61,53,38,43
chr1	86119295	.	A	G	407.55	PASS	AC=1;AF=0.583;AN=2;DP=441;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant14-variant20-variant23-variant24-variant27-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:449,0,572:12,8,11,10
chr1	86146673	.	A	T	259.33	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.29;QD=9.97;ReadPosRankSum=-0.343;SOR=0.551;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:288,0,518:3,13,2,8
chr1	86167957	.	C	T	1270.42	PASS	AC=1;AF=0.849;AN=2;DP=1521;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:318,0,213:4,4,3,7
chr1	86173298	.	C	T	1180.39	PASS	AC=1;AF=0.603;AN=2;DP=4058;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,35:111:99:680,0,2024:44,32,21,14
chr1	86174232	.	G	T	82.71	PASS	AC=1;AF=0.611;AN=2;DP=260;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:68:154,0,68:1,2,2,4
chr1	86195047	.	T	C	2548.18	PASS	AC=1;AF=0.591;AN=2;DP=5084;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:85,59:144:99:1312,0,2129:43,42,31,28
chr1	86195106	.	CT	C	1420.63	PASS	AC=1;AF=0.591;AN=2;DP=3801;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,47:96:99:1052,0,1110:18,31,19,28
chr1	86202016	.	C	T	4884.14	PASS	AC=1;AF=0.955;AN=2;DP=6517;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:75,74:149:99:1743,0,1970:39,36,44,30
chr1	86210241	.	G	GT	386.51	PASS	AC=1;AF=0.955;AN=2;DP=520;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:188,0,157:4,2,5,1
chr1	86210546	.	G	A	668.72	PASS	AC=1;AF=0.943;AN=2;DP=898;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:6,22:28:99:649,0,113:1,5,4,18
chr1	86211325	.	G	A	625.13	PASS	AC=1;AF=0.955;AN=2;DP=1182;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:527,0,518:4,15,4,14
chr1	86246849	.	A	C	865	PASS	AC=1;AF=0.872;AN=2;DP=1515;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,24:38:99:557,0,274:7,7,14,10
chr1	86249063	.	C	T	1208.39	PASS	AC=2;AF=0.966;AN=2;DP=1127;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:927,87,0:0,0,18,11
chr1	86249735	.	A	C	116.93	PASS	AC=1;AF=0.545;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant14-variant20-variant21-variant24-variant27-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,13:15:46:418,0,46:2,0,10,3
chr1	86249911	.	A	G	2278.13	PASS	AC=2;AF=0.966;AN=2;DP=3494;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2299,222,0:0,0,38,36
chr1	86252025	.	A	G	564.83	PASS	AC=1;AF=0.656;AN=2;DP=1690;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:731,0,830:17,14,15,12
chr1	86304433	.	T	C	405.96	PASS	AC=1;AF=0.5;AN=2;DP=65;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:441,0,483:3,13,5,11
chr1	86313536	.	G	T	123.66	PASS	AC=1;AF=0.538;AN=2;DP=132;FractionInformativeReads=1;MQ=60;set=variant10-variant14-variant15-variant17-variant19-variant20-variant25-variant28-variant30-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:135,0,198:2,4,0,4
chr1	86340193	.	G	T	43.52	PASS	AC=1;AF=0.859;AN=2;DP=360;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:20:82,0,20:1,0,2,1
chr1	86340240	.	T	C	160.08	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.572;QD=20.01;ReadPosRankSum=-1.589;SOR=1.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:25:188,0,25:1,1,4,2
chr1	86340262	.	C	A	364.05	PASS	AC=1;AF=0.596;AN=2;DP=649;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:182,0,185:4,4,4,3
chr1	86340464	.	C	T	292.46	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=7.471;FractionInformativeReads=1;MQ=60;MQRankSum=-0.775;QD=12.72;ReadPosRankSum=1.581;SOR=2.494;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:321,0,325:5,8,1,9
chr1	86340523	.	T	C	82.7	PASS	AC=1;AF=0.863;AN=2;DP=358;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:219,0,242:1,4,0,5
chr1	86340524	.	G	A	82.7	PASS	AC=1;AF=0.63;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:219,0,242:1,4,0,6
chr1	86340794	.	T	C	669.63	PASS	AC=1;AF=0.863;AN=2;DP=478;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,8:9:19:276,0,19:1,0,7,1
chr1	86340880	.	A	G	478.7	PASS	AC=1;AF=0.593;AN=2;DP=1216;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,41:53:99:1032,0,192:8,4,24,17
chr1	86341153	.	G	A	163.66	PASS	AC=1;AF=0.574;AN=2;DP=447;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:366,0,433:3,10,2,11
chr1	86361384	.	C	T	175.08	PASS	AC=1;AF=0.886;AN=2;DP=520;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:55:194,0,55:1,1,5,1
chr1	86453409	.	C	T	529.33	PASS	AC=1;AF=0.526;AN=2;DP=573;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant14-variant16-variant18-variant19-variant20-variant24-variant28-variant30-variant35-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:436,0,464:4,12,6,10
chr1	86482922	.	A	T	442.22	PASS	AC=1;AF=0.548;AN=2;DP=782;MQ=60;set=variant2-variant3-variant4-variant6-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:359,0,422:6,10,4,10
chr1	86487981	.	G	A	1581.35	PASS	AC=2;AF=0.756;AN=2;DP=3059;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,76:77:99:2262,212,0:1,0,34,42
chr1	86487992	.	A	AACAG	2112.9	PASS	AC=2;AF=0.756;AN=2;DP=2761;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2869,195,0:0,0,26,39
chr1	86488232	.	G	A	853.07	PASS	AC=1;AF=0.55;AN=2;DP=1705;MQ=60;set=variant2-variant3-variant4-variant6-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,44:78:99:951,0,732:19,15,24,20
chr1	86497769	.	C	G	53.54	PASS	AC=2;AF=0.857;AN=2;DP=80;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant10-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	86512433	.	C	T	613.85	PASS	AC=1;AF=0.5;AN=2;DP=92;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:642,0,558:15,6,16,7
chr1	86515958	.	C	T	598.93	PASS	AC=1;AF=0.545;AN=2;DP=358;MQ=60;set=variant3-variant4-variant6-variant16-variant19-variant21-variant23-variant24-variant25-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:624,0,540:3,15,6,17
chr1	86524913	.	A	T	898.57	PASS	AC=1;AF=0.5;AN=2;DP=140;FractionInformativeReads=1;MQ=60;set=variant16-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:324,0,479:9,10,5,8
chr1	86554813	.	G	GA	250.86	PASS	AC=2;AF=0.604;AN=2;DP=460;set=variant-variant2-variant5-variant6-variant7-variant9-variant11-variant12-variant16-variant17-variant22-variant24-variant26-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:54:789,54,0:0,0,11,6
chr1	86554821	.	G	A	579.6	PASS	AC=2;AF=0.66;AN=2;DP=609;FractionInformativeReads=1;set=variant-variant2-variant5-variant6-variant7-variant9-variant11-variant12-variant16-variant17-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:78:1003,78,0:0,0,16,9
chr1	86578449	.	A	C	320.88	PASS	AC=1;AF=0.5;AN=2;DP=228;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant11-variant12-variant17-variant23-variant28-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:273,0,532:0,7,0,7
chr1	86578453	.	C	T	286.26	PASS	AC=1;AF=0.5;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant11-variant12-variant17-variant23-variant28-variant32-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:273,0,532:0,6,0,7
chr1	86590915	.	G	A	3873.43	PASS	AC=2;AF=0.989;AN=2;DP=4577;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3446,291,0:0,0,42,55
chr1	86591837	.	G	A	3808.89	PASS	AC=2;AF=0.726;AN=2;DP=5788;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4061,387,0:0,0,53,76
chr1	86621992	.	C	A	605.87	PASS	AC=1;AF=0.757;AN=2;DP=1696;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,27:41:99:849,0,265:8,6,19,8
chr1	86814688	.	C	T	958.65	PASS	AC=2;AF=0.6;AN=2;DP=1245;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:817,69,0:0,0,14,9
chr1	86814743	.	C	T	1900.13	PASS	AC=2;AF=0.603;AN=2;DP=2194;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1544,141,0:0,0,32,15
chr1	86814920	.	CA	C	1774.73	PASS	AC=2;AF=0.6;AN=2;DP=1658;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1755,154,0:0,0,23,28
chr1	86815022	.	C	G	1896.89	PASS	AC=2;AF=0.795;AN=2;DP=2221;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1952,180,0:0,0,36,24
chr1	86815319	.	A	G	3329.52	PASS	AC=2;AF=0.795;AN=2;DP=5147;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3198,308,0:0,0,56,47
chr1	86818572	.	T	C	3385.97	PASS	AC=2;AF=0.795;AN=2;DP=3794;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2525,257,0:0,0,44,42
chr1	86820267	.	C	T	3625.46	PASS	AC=2;AF=0.795;AN=2;DP=4010;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2722,269,0:0,0,44,46
chr1	86821194	.	A	ACT	358.01	PASS	AC=2;AF=0.824;AN=2;DP=331;FS=0;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:314,21,0:0,0,1,6
chr1	86821910	.	CTAAAA	C	312.98	PASS	AC=2;AF=0.63;AN=2;DP=151;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant27-variant29-variant30-variant33-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,0,4
chr1	86822231	.	A	G	1112.39	PASS	AC=1;AF=0.588;AN=2;DP=805;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant11-variant16-variant17-variant19-variant27-variant29-variant30-variant33-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,30:57:99:717,0,572:17,10,16,14
chr1	86823503	.	A	G	278.74	PASS	AC=2;AF=0.625;AN=2;DP=56;MQ=60;set=variant3-variant16-variant19-variant27-variant29-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:87,6,0:0,0,0,2
chr1	86838158	.	C	T	735.25	PASS	AC=2;AF=0.795;AN=2;DP=1496;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:368,30,0:0,0,8,2
chr1	86847955	.	G	A	906.07	PASS	AC=2;AF=0.617;AN=2;DP=1085;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1152,105,0:0,0,25,10
chr1	86848567	.	CAATATT	C	712.64	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=5.072;FractionInformativeReads=1;MQ=60;MQRankSum=-0.447;QD=20.36;ReadPosRankSum=0.017;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,19:35:99:750,0,1185:9,7,14,5
chr1	86861684	.	A	G	301.47	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.655;QD=11.17;ReadPosRankSum=-1.771;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:330,0,391:8,6,8,5
chr1	86896354	.	G	A	737.82	PASS	AC=2;AF=0.852;AN=2;DP=690;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:35:424,35,0:0,0,12,0
chr1	86897973	.	T	C	945.01	PASS	AC=2;AF=0.852;AN=2;DP=659;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:420,30,0:0,0,10,0
chr1	86906114	.	T	C	235.24	PASS	AC=1;AF=0.75;AN=2;DP=286;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:258,0,223:1,6,0,7
chr1	86907373	.	G	C	81.15	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=8.751;FractionInformativeReads=1;MQ=60;MQRankSum=1.447;QD=8.12;ReadPosRankSum=2.072;SOR=0.02;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:109,0,222:0,6,2,2
chr1	86909703	.	T	C	339.51	PASS	AC=1;AF=0.595;AN=2;DP=459;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant9-variant11-variant12-variant13-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:205,0,533:3,13,1,6
chr1	86911444	.	C	T	413.2	PASS	AC=1;AF=0.5;AN=2;DP=118;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,44:81:99:1043,0,987:11,26,19,25
chr1	86911543	.	C	T	591.98	PASS	AC=2;AF=0.872;AN=2;DP=501;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:501,39,0:0,0,3,10
chr1	86921659	.	T	C	3880.26	PASS	AC=1;AF=0.5;AN=2;DP=798;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:195,224:419:99:5462,0,4732:96,99,107,117
chr1	86934176	.	T	G	6450.4	PASS	AC=1;AF=0.703;AN=2;DP=6545;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,82:156:99:2066,0,1967:31,43,36,46
chr1	86934908	.	T	G	86.88	PASS	AC=1;AF=0.5;AN=2;DP=22;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:271,0,181:2,5,1,7
chr1	86939130	.	C	T	3048.82	PASS	AC=1;AF=0.955;AN=2;DP=3948;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,48:93:99:1274,0,1117:24,21,26,22
chr1	86939390	.	G	A	2203.56	PASS	AC=1;AF=0.966;AN=2;DP=3089;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:44,44:88:99:1090,0,1308:30,14,27,17
chr1	86951348	.	A	ATCT	319.44	PASS	AC=1;AF=0.583;AN=2;DP=88;MQ=60;set=variant12-variant20-variant25-variant26-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:519,0,442:2,7,1,12
chr1	86952324	.	A	G	694.29	PASS	AC=2;AF=0.814;AN=2;DP=3986;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2800,276,0:0,0,42,50
chr1	86954591	.	T	C	671.81	PASS	AC=1;AF=0.58;AN=2;DP=1483;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant16-variant19-variant21-variant22-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,28:66:99:713,0,1087:26,12,20,8
chr1	86956772	.	G	A	88.71	PASS	AC=1;AF=0.629;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,154:2,2,2,0
chr1	86956785	.	C	G	160.46	PASS	AC=2;AF=0.869;AN=2;DP=569;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:395,30,0:0,0,8,2
chr1	86959173	.	T	C	1102.52	PASS	AC=2;AF=0.826;AN=2;DP=4488;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2772,261,0:0,0,51,36
chr1	86959796	.	C	T	416.88	PASS	AC=2;AF=0.813;AN=2;DP=1839;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1845,168,0:0,0,39,17
chr1	86961226	.	T	C	1414.19	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.59;QD=12.86;ReadPosRankSum=-0.997;SOR=0.709;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,58:110:99:1442,0,1302:33,19,37,21
chr1	87025764	.	C	T	303.1	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=2.938;FractionInformativeReads=1;MQ=60;MQRankSum=1.177;QD=7.77;ReadPosRankSum=0.938;SOR=0.339;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,13:39:99:331,0,820:9,17,6,7
chr1	87025819	.	T	C	926.62	PASS	AC=1;AF=0.5;AN=2;DP=830;MQ=60;set=variant4-variant5-variant9-variant10-variant14-variant17-variant19-variant20-variant23-variant26-variant29-variant30-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:758,0,770:18,5,16,12
chr1	87036746	.	C	A	2167.4	PASS	AC=2;AF=0.813;AN=2;DP=7311;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:5744,570,0:0,0,109,82
chr1	87036946	.	C	T	1062.69	PASS	AC=1;AF=0.5;AN=2;DP=970;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant9-variant10-variant14-variant17-variant19-variant20-variant23-variant26-variant29-variant30-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,36:75:99:1093,0,1137:10,29,7,29
chr1	87038240	.	T	C	46.75	PASS	AC=2;AF=0.65;AN=2;DP=48;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant9-variant10-variant20-variant23-variant26-variant29-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr1	87043733	.	C	T	831.85	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.822;QD=12.23;ReadPosRankSum=-2.933;SOR=0.709;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:860,0,870:15,20,14,19
chr1	87045696	.	G	C	375.12	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=4.425;FractionInformativeReads=1;MQ=60;MQRankSum=-0.012;QD=8.72;ReadPosRankSum=-2.277;SOR=0.277;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:403,0,665:16,7,11,9
chr1	87045896	.	TCCTACA	T	3702.44	PASS	AC=1;AF=0.769;AN=2;DP=7723;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,82:163:99:2004,0,1898:43,38,43,39
chr1	87045902	.	ACCTACT	ACCTACTCCTACT,A	4076.42	PASS	AC=0,1;AF=0.333,0.167;AN=2;DP=613;MQ=60;set=variant16-variant35-variant41	GT:DP:GQ:SB	0/2:157:99:43,41,38,35
chr1	87046451	.	G	T	314.39	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=7.384;FractionInformativeReads=1;MQ=60;MQRankSum=0.106;QD=14.97;ReadPosRankSum=1.021;SOR=2.494;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:343,0,243:5,5,2,9
chr1	87101245	.	A	G	467.54	PASS	AC=2;AF=0.717;AN=2;DP=1367;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1480,147,0:0,0,31,18
chr1	87101375	.	C	G	893.64	PASS	AC=2;AF=0.717;AN=2;DP=3171;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2694,267,0:0,0,38,51
chr1	87101649	.	T	C	525.19	PASS	AC=1;AF=0.5;AN=2;DP=398;MQ=60;set=variant4-variant5-variant9-variant10-variant19-variant23-variant26-variant29-variant30-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,18:50:99:440,0,753:19,13,14,4
chr1	87108214	.	G	T	716.38	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.138;QD=15.92;ReadPosRankSum=-1.804;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:745,0,512:14,5,19,7
chr1	87170493	.	T	G	3239.62	PASS	AC=1;AF=0.545;AN=2;DP=1796;MQ=60;set=variant3-variant9-variant13-variant15-variant19-variant24-variant25-variant29-variant30-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,59:123:99:1397,0,1657:30,34,25,34
chr1	87185103	.	A	T	281.4	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.109;QD=20.1;ReadPosRankSum=-0.193;SOR=0.976;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:310,0,219:6,0,8,0
chr1	87185440	.	T	A	655.49	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.28;QD=24.28;ReadPosRankSum=-0.979;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:684,0,360:2,8,3,14
chr1	87185443	.	T	C	652.48	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.294;QD=25.1;ReadPosRankSum=-2.318;SOR=1.091;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,17:26:99:681,0,402:2,7,3,14
chr1	87185444	.	T	C	655.49	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=59.12;MQRankSum=1.782;QD=24.28;ReadPosRankSum=-1.531;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:684,0,369:2,8,3,14
chr1	87185445	.	G	A	655.49	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=59.12;MQRankSum=0.126;QD=24.28;ReadPosRankSum=-2.184;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:684,0,369:2,8,3,14
chr1	87185449	.	T	G,C	376.58	PASS	AC=1,1;AF=0.632,0.026;AN=2;DP=305;FractionInformativeReads=1;set=variant3-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant24-variant25-variant29-variant30-variant34-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	2/1:26:99:0,0,5,21
chr1	87190093	.	GTAAA	G	97.72	PASS	AC=1;AF=0.5;AN=2;DP=72;FractionInformativeReads=1;MQ=60;set=variant7-variant14-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:99:249,0,879:6,9,3,4
chr1	87200621	.	G	A	592.74	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=5.885;FractionInformativeReads=1;MQ=60;MQRankSum=0.421;QD=14.82;ReadPosRankSum=-0.15;SOR=0.169;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:621,0,549:16,2,16,6
chr1	87200729	.	C	G	4877.75	PASS	AC=1;AF=0.679;AN=2;DP=4195;MQ=60;set=variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:79,78:157:99:1712,0,1977:46,33,41,37
chr1	87207800	.	G	T	354.36	PASS	AC=2;AF=0.658;AN=2;DP=224;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant25-variant29-variant30-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:71:871,71,0:0,0,23,1
chr1	87207872	.	G	T	928.6	PASS	AC=1;AF=0.545;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant13-variant15-variant19-variant24-variant25-variant29-variant30-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,23:63:99:587,0,1247:30,10,18,5
chr1	87208953	.	T	A	3511.15	PASS	AC=2;AF=0.65;AN=2;DP=3410;MQ=60;set=variant3-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant25-variant29-variant30-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,144:145:99:4700,403,0:1,0,73,71
chr1	87209658	.	G	A	3028.05	PASS	AC=2;AF=0.65;AN=2;DP=2822;MQ=60;set=variant3-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant25-variant29-variant30-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4248,384,0:0,0,80,48
chr1	87212934	.	G	A	3906.83	PASS	AC=1;AF=0.5;AN=2;DP=2291;FractionInformativeReads=1;set=variant3-variant9-variant13-variant19-variant24-variant29-variant30-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:95,92:187:99:1922,0,2176:42,53,43,49
chr1	87212999	.	A	G	1766.74	PASS	AC=2;AF=0.667;AN=2;DP=2343;MQ=60;set=variant3-variant7-variant9-variant10-variant13-variant14-variant15-variant18-variant19-variant24-variant25-variant29-variant30-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,99:100:99:3207,293,0:1,0,36,63
chr1	87213181	.	TA	T	921.81	PASS	AC=2;AF=0.667;AN=2;DP=1042;MQ=60;set=variant3-variant7-variant9-variant10-variant13-variant14-variant15-variant18-variant19-variant24-variant25-variant29-variant30-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1834,147,0:0,0,27,22
chr1	87458695	.	G	A	1852.51	PASS	AC=2;AF=0.849;AN=2;DP=3220;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1690,165,0:0,0,33,22
chr1	87538182	.	TTG	T	4143.25	PASS	AC=2;AF=0.833;AN=2;DP=4193;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:3353,226,0:0,0,48,26
chr1	87538200	.	G	A	4467.46	PASS	AC=2;AF=0.869;AN=2;DP=4499;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3744,265,0:0,0,51,36
chr1	87549858	.	A	G	1652.72	PASS	AC=2;AF=0.977;AN=2;DP=1503;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1074,105,0:0,0,22,13
chr1	87558066	.	CCACATA	C	232.96	PASS	AC=2;AF=0.977;AN=2;DP=359;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:405,27,0:0,0,9,0
chr1	87563668	.	G	A	5792.32	PASS	AC=2;AF=0.977;AN=2;DP=6951;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4520,393,0:0,0,78,53
chr1	87563921	.	T	G	3950.02	PASS	AC=2;AF=0.93;AN=2;DP=4163;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,92:93:99:2853,265,0:0,1,70,22
chr1	87564110	.	G	A	2407.57	PASS	AC=2;AF=1;AN=2;DP=2687;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1695,153,0:0,0,14,37
chr1	87570398	.	G	A	3460.82	PASS	AC=2;AF=0.833;AN=2;DP=4279;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2421,222,0:0,0,30,44
chr1	87572817	.	C	T	6264.43	PASS	AC=2;AF=0.93;AN=2;DP=6954;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4710,426,0:0,0,91,51
chr1	87573336	.	ATATGTT	A	779.4	PASS	AC=2;AF=0.805;AN=2;DP=1124;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:70:1027,70,0:0,0,12,11
chr1	87573963	.	T	C	2039.8	PASS	AC=2;AF=0.833;AN=2;DP=3077;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2031,198,0:0,0,32,34
chr1	87573988	.	T	C	1688.89	PASS	AC=2;AF=0.93;AN=2;DP=2911;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2020,192,0:0,0,32,32
chr1	87574217	.	A	G	3812.87	PASS	AC=2;AF=0.833;AN=2;DP=4039;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3366,270,0:0,0,64,26
chr1	87598117	.	T	G	5674.04	PASS	AC=2;AF=0.8;AN=2;DP=4608;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3951,353,0:0,0,68,50
chr1	87599697	.	G	A	5011.79	PASS	AC=2;AF=0.9;AN=2;DP=4501;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3560,360,0:0,0,54,66
chr1	87633761	.	C	T	151.4	PASS	AC=2;AF=0.886;AN=2;DP=1099;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:59:659,59,0:0,0,15,5
chr1	87633929	.	A	G	1296.73	PASS	AC=1;AF=0.55;AN=2;DP=863;MQ=60;set=variant18-variant22-variant24-variant29-variant30-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,48:103:99:1089,0,1275:29,26,22,26
chr1	87709224	.	C	A	838.2	PASS	AC=1;AF=0.542;AN=2;DP=507;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant21-variant26-variant30-variant31-variant34-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:507,0,746:20,7,13,3
chr1	87709437	.	G	C	581.27	PASS	AC=1;AF=0.575;AN=2;DP=948;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant12-variant14-variant16-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:526,0,602:7,15,7,12
chr1	87716433	.	C	T	410	PASS	AC=1;AF=0.575;AN=2;DP=626;MQ=60;set=variant2-variant5-variant6-variant12-variant14-variant16-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,23:34:99:724,0,254:3,8,7,16
chr1	87716515	.	T	C	41.5	PASS	AC=1;AF=0.579;AN=2;DP=179;set=variant2-variant5-variant6-variant12-variant14-variant16-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:31:156,0,31:0,1,1,3
chr1	87794437	.	A	AAGCGAGCG	1711.86	PASS	AC=2;AF=0.583;AN=2;DP=399;MQ=60;set=variant19-variant21-variant24-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2668,186,0:0,0,31,28
chr1	87794519	.	C	G	2281.72	PASS	AC=2;AF=1;AN=2;DP=2488;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1888,171,0:0,0,34,23
chr1	87794596	.	C	T	1244.44	PASS	AC=2;AF=0.583;AN=2;DP=670;FractionInformativeReads=1;MQ=60;set=variant19-variant21-variant24-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3000,311,0:0,0,56,48
chr1	87794752	.	TAA	TAAA,T,TA	98.9	PASS	AC=0,2,0;AF=0.13,0.152,0.261;AN=2;DP=726;MQ=60;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant8-filterInvariant10-variant13-variant16-filterInvariant17-variant19-variant21-variant24-variant28-filterInvariant29-variant31-filterInvariant32-variant33-variant34-variant41-variant42-variant44	GT:DP:GQ:SB	2/2:22:66:0,0,7,15
chr1	87797957	.	G	C	1141.47	PASS	AC=2;AF=0.583;AN=2;DP=546;FractionInformativeReads=1;MQ=60;set=variant19-variant21-variant24-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2795,255,0:0,0,32,53
chr1	89225976	.	T	C	448.14	PASS	AC=1;AF=0.711;AN=2;DP=2074;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:738,0,551:14,12,16,15
chr1	89236029	.	T	A	494.97	PASS	AC=1;AF=0.671;AN=2;DP=1644;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:888,0,634:16,10,21,10
chr1	89236260	.	CT	CTT,C	42.03	PASS	AC=1,0;AF=0.45,0.05;AN=2;DP=362;set=filterInvariant4-variant5-variant10-variant13-variant15-filterInvariant24-variant30-variant34-variant37-variant41	GT:DP:GQ:SB	0/1:28:99:0,9,3,16
chr1	89271574	.	T	C	2228.04	PASS	AC=1;AF=0.671;AN=2;DP=3857;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,57:116:99:1730,0,1870:39,20,35,22
chr1	89280965	.	A	G	652.41	PASS	AC=1;AF=0.671;AN=2;DP=1532;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:623,0,540:14,7,15,10
chr1	89301123	.	C	T	3017.96	PASS	AC=1;AF=0.711;AN=2;DP=8158;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,111:236:99:2727,0,3152:48,77,39,72
chr1	89322982	.	G	A	4460.96	PASS	AC=2;AF=1;AN=2;DP=6386;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4149,417,0:0,0,71,69
chr1	89325983	.	T	C	876.56	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=1.054;FractionInformativeReads=1;MQ=60;MQRankSum=1.148;QD=14.14;ReadPosRankSum=-0.754;SOR=0.948;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,32:62:99:905,0,779:10,20,9,23
chr1	89418843	.	A	T	661.44	PASS	AC=1;AF=0.5;AN=2;DP=87;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:551,0,543:6,13,6,14
chr1	89446107	.	AT	A	175.2	PASS	AC=1;AF=0.5;AN=2;DP=169;MQ=60;set=variant10-filterInvariant16-variant25-filterInvariant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:175,0,329:11,5,9,2
chr1	89446508	.	C	G	4710.86	PASS	AC=1;AF=0.5;AN=2;DP=3348;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant10-variant13-variant20-variant22-variant23-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:127,158:285:99:6219,0,6950:80,47,89,69
chr1	89446523	.	T	A	6079.38	PASS	AC=1;AF=0.5;AN=2;DP=985;FractionInformativeReads=1;MQ=60;set=variant10-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:150,172:322:99:6444,0,7452:90,60,96,76
chr1	89449168	.	T	A	1400.19	PASS	AC=1;AF=0.5;AN=2;DP=202;FractionInformativeReads=1;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,48:106:99:1219,0,1556:26,32,22,26
chr1	89449278	.	C	T	104.07	PASS	AC=1;AF=0.5;AN=2;DP=1910;set=filterInvariant-variant2-variant3-variant4-variant5-variant9-filterInvariant11-variant15-variant16-variant18-variant20-filterInvariant21-variant22-variant23-variant26-variant28-variant29-filterInvariant32-variant34-variant37-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,19:81:99:250,0,1861:28,34,8,11
chr1	89449298	.	C	G	168	PASS	AC=1;AF=0.5;AN=2;DP=2538;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant7-filterInvariant8-variant9-variant11-filterInvariant12-variant15-variant16-variant18-filterInvariant19-variant20-variant21-variant22-variant23-filterInvariant24-variant26-variant28-variant29-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,23:87:99:409,0,1858:28,36,12,11
chr1	89449390	.	T	C	734.59	PASS	AC=1;AF=0.5;AN=2;DP=3980;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,43:127:99:1388,0,3297:43,41,22,21
chr1	89449399	.	T	C	746.58	PASS	AC=1;AF=0.5;AN=2;DP=3913;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,37:118:99:1293,0,3265:40,41,19,18
chr1	89449434	.	T	C	280.25	PASS	AC=1;AF=0.5;AN=2;DP=3278;set=variant-filterInvariant2-variant3-variant4-variant5-variant7-filterInvariant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-filterInvariant25-variant26-variant28-variant29-variant34-variant37-filterInvariant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,31:113:99:558,0,2173:46,36,18,13
chr1	89449483	.	C	G	150.45	PASS	AC=1;AF=0.5;AN=2;DP=2094;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant7-variant9-filterInvariant11-filterInvariant15-filterInvariant17-filterInvariant19-filterInvariant22-variant26-filterInvariant28-filterInvariant29-filterInvariant34-filterInvariant37-variant40-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:111,18:129:99:133,0,3176:65,46,8,10
chr1	89449508	.	A	ATTTTTTTTTTT	78.48	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=135;FS=8.596;FractionInformativeReads=0.896;MQ=58.95;MQRankSum=-3.872;QD=0.58;ReadPosRankSum=-2.779;SOR=1.34;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:109,12:121:99:116,0,4442:62,47,4,8
chr1	89472322	.	TA	TAA,TAAA,T	88.1	PASS	AC=1,0,0;AF=0.375,0.042,0.083;AN=2;DP=189;MQ=60;set=variant4-variant9-variant11-variant22-variant26-variant34-variant36-variant37-filterInvariant38-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:15:86:8,2,5,0
chr1	89473134	.	C	T	1350.97	PASS	AC=1;AF=0.5;AN=2;DP=912;MQ=60;set=variant4-variant7-variant9-variant10-variant11-variant22-variant26-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,46:96:99:1308,0,1503:30,20,28,18
chr1	89473175	.	T	C	1983.13	PASS	AC=1;AF=0.613;AN=2;DP=4032;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,63:131:99:1632,0,1890:43,25,38,25
chr1	89477830	.	T	C	32.24	PASS	AC=1;AF=0.591;AN=2;DP=127;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant9-variant10-variant11-variant22-variant26-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:271,0,135:0,4,2,7
chr1	89478854	.	C	G	1106.18	PASS	AC=1;AF=0.817;AN=2;DP=833;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:212,0,396:10,0,6,0
chr1	89478868	.	G	A	1045.19	PASS	AC=1;AF=0.542;AN=2;DP=295;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant15-variant22-variant30-variant31-variant33-variant34-variant35-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:242,0,514:13,1,7,0
chr1	89479063	.	G	A	1861.69	PASS	AC=1;AF=0.625;AN=2;DP=3331;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,52:122:99:1091,0,1882:27,43,23,29
chr1	89479074	.	C	T	1715.66	PASS	AC=1;AF=0.625;AN=2;DP=3036;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,51:115:99:1120,0,1737:23,41,22,29
chr1	89479758	.	T	C	3665.2	PASS	AC=1;AF=0.829;AN=2;DP=4213;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,43:88:99:1063,0,1092:27,18,27,16
chr1	89486037	.	C	T	2180.33	PASS	AC=1;AF=0.826;AN=2;DP=3851;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,45:94:99:1337,0,1233:30,19,34,11
chr1	89517918	.	C	T	269.73	PASS	AC=2;AF=0.837;AN=2;DP=535;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:327,27,0:0,0,8,1
chr1	89518065	.	C	G	1702.61	PASS	AC=2;AF=0.837;AN=2;DP=7166;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:4735,490,0:0,0,94,70
chr1	89518120	.	A	G	1893.05	PASS	AC=1;AF=0.607;AN=2;DP=4833;set=variant2-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,85:168:99:1999,0,1968:45,38,43,42
chr1	89518173	.	T	A	1232.25	PASS	AC=2;AF=0.837;AN=2;DP=5742;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:5226,385,0:0,0,55,69
chr1	89518195	.	G	A	1285.72	PASS	AC=2;AF=0.837;AN=2;DP=4864;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:4539,316,0:0,0,41,62
chr1	89520329	.	GAAAAAC	G	410.86	PASS	AC=1;AF=0.641;AN=2;DP=1316;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,14:39:99:504,0,1887:18,7,12,2
chr1	89520574	.	C	A	780.66	PASS	AC=1;AF=0.829;AN=2;DP=3219;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,28:77:99:728,0,1134:21,28,7,21
chr1	89520636	.	G	A	344.06	PASS	AC=1;AF=0.829;AN=2;DP=1406;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,12:41:99:404,0,1382:12,17,2,10
chr1	89520643	.	C	T	310.54	PASS	AC=1;AF=0.829;AN=2;DP=1278;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,10:37:99:336,0,1366:11,16,2,8
chr1	89522512	.	C	T	1958.88	PASS	AC=1;AF=0.609;AN=2;DP=5268;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,68:133:99:1822,0,1665:43,22,46,22
chr1	89522646	.	G	C	2129.28	PASS	AC=1;AF=0.829;AN=2;DP=8201;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,110:188:99:3044,0,1886:34,44,52,58
chr1	89574026	.	G	A	2249.91	PASS	AC=2;AF=0.743;AN=2;DP=3027;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3109,297,0:0,0,38,61
chr1	89575677	.	T	C	126.78	PASS	AC=2;AF=0.75;AN=2;DP=297;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:384,30,0:0,0,5,5
chr1	89579941	.	T	C	4046.9	PASS	AC=2;AF=0.73;AN=2;DP=6028;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4667,453,0:0,0,81,70
chr1	89582690	.	G	C	2703.63	PASS	AC=2;AF=0.73;AN=2;DP=3927;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2571,266,0:0,0,49,40
chr1	89583544	.	T	C	286.76	PASS	AC=2;AF=0.736;AN=2;DP=362;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:243,21,0:0,0,1,6
chr1	89597654	.	G	A	295.84	PASS	AC=1;AF=0.5;AN=2;DP=125;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,18:60:99:324,0,1080:18,24,9,9
chr1	89597755	.	T	C	2223.05	PASS	AC=2;AF=0.716;AN=2;DP=2356;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1461,138,0:0,0,25,21
chr1	89599070	.	T	C	49.16	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=61;FS=1.589;FractionInformativeReads=1;MQ=58.26;MQRankSum=-3.645;QD=0.81;ReadPosRankSum=1.223;SOR=0.425;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:55,6:61:77:77,0,3593:23,32,3,3
chr1	89599084	.	G	C	58.16	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=59;FS=1.744;FractionInformativeReads=1;MQ=58.2;MQRankSum=-3.724;QD=0.99;ReadPosRankSum=-0.063;SOR=0.323;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:53,6:59:86:86,0,3515:20,33,3,3
chr1	89599106	.	T	C	46.26	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=50;FS=0;FractionInformativeReads=1;MQ=58.4;MQRankSum=-2.328;QD=0.93;ReadPosRankSum=-1.682;SOR=0.681;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:45,5:50:74:74,0,2884:19,26,2,3
chr1	89599115	.	C	T	61.31	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=1;MQ=58.18;MQRankSum=-2.7;QD=1.39;ReadPosRankSum=-2.774;SOR=0.547;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:39,5:44:90:90,0,2504:15,24,2,3
chr1	89607479	.	G	T	2770.83	PASS	AC=2;AF=0.716;AN=2;DP=3015;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2625,184,0:0,0,22,39
chr1	89607486	.	T	C	2721.22	PASS	AC=2;AF=0.743;AN=2;DP=2704;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2389,163,0:0,0,18,33
chr1	89615979	.	C	T	1021.21	PASS	AC=2;AF=0.716;AN=2;DP=976;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1218,111,0:0,0,27,10
chr1	89618472	.	GA	G,GAA	553.25	PASS	AC=2,0;AF=0.56,0.036;AN=2;DP=2880;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	1/1:70:40:3,4,34,29
chr1	89637578	.	G	A	9008.28	PASS	AC=2;AF=0.743;AN=2;DP=13315;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,366:367:99:10778,1058,0:1,0,175,191
chr1	89647386	.	G	A	3838.67	PASS	AC=2;AF=0.744;AN=2;DP=4531;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3383,360,0:0,0,72,48
chr1	89647546	.	T	TC	912.44	PASS	AC=2;AF=0.744;AN=2;DP=1242;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1743,132,0:0,0,10,34
chr1	89650099	.	G	A	1039.56	PASS	AC=1;AF=0.571;AN=2;DP=1839;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant13-variant19-variant24-variant31-variant32-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,51:111:99:1486,0,1591:23,37,20,31
chr1	89650850	.	A	T	588.02	PASS	AC=1;AF=0.588;AN=2;DP=2526;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,41:62:99:1113,0,667:13,8,24,17
chr1	89652071	.	T	C	672.78	PASS	AC=1;AF=0.574;AN=2;DP=3065;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,27:91:99:927,0,14595:32,32,12,15
chr1	89652072	.	C	T	672.78	PASS	AC=1;AF=0.574;AN=2;DP=3054;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,27:92:99:924,0,14870:32,33,12,15
chr1	89652078	.	A	T	708.75	PASS	AC=1;AF=0.574;AN=2;DP=3065;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,26:89:99:889,0,15310:30,33,12,14
chr1	89652087	.	C	T	795.74	PASS	AC=1;AF=0.574;AN=2;DP=3040;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,24:89:99:932,0,15607:32,33,11,13
chr1	89652088	.	C	G	795.74	PASS	AC=1;AF=0.574;AN=2;DP=3012;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,25:91:99:932,0,15607:33,33,12,13
chr1	89652090	.	T	G	753.75	PASS	AC=1;AF=0.574;AN=2;DP=3002;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,26:90:99:893,0,15499:32,32,13,13
chr1	89652094	.	G	A	711.76	PASS	AC=1;AF=0.574;AN=2;DP=2965;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,26:88:99:896,0,15309:30,32,14,12
chr1	89652097	.	C	T	714.77	PASS	AC=1;AF=0.574;AN=2;DP=2971;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,25:86:99:879,0,14902:29,32,14,11
chr1	89652102	.	A	T	720.81	PASS	AC=1;AF=0.574;AN=2;DP=2974;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,26:88:99:882,0,14559:27,35,14,12
chr1	89652846	.	G	A	1472.49	PASS	AC=1;AF=0.571;AN=2;DP=1997;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant13-variant19-variant24-variant31-variant32-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,82:145:99:1795,0,1525:30,33,42,40
chr1	89661228	.	T	G	2628.11	PASS	AC=2;AF=0.731;AN=2;DP=5006;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3848,351,0:0,0,39,78
chr1	89664276	.	T	C	523.83	PASS	AC=2;AF=0.75;AN=2;DP=484;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:492,42,0:0,0,9,5
chr1	89726592	.	G	A	543.94	PASS	AC=1;AF=0.795;AN=2;DP=1135;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:452,0,507:2,13,2,12
chr1	89727870	.	A	T	501.16	PASS	AC=1;AF=0.607;AN=2;DP=545;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant13-variant15-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:446,0,359:8,5,10,6
chr1	89732237	.	G	A	901.73	PASS	AC=1;AF=0.607;AN=2;DP=1264;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant13-variant15-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,44:92:99:1153,0,1355:18,30,14,30
chr1	89735314	.	G	A	4552.23	PASS	AC=1;AF=0.65;AN=2;DP=1066;MQ=60;set=variant3-variant5-variant6-variant13-variant15-variant34-variant35-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,50:96:99:1279,0,1356:25,21,20,30
chr1	89737152	.	GA	G	15431.5	PASS	AC=1;AF=0.65;AN=2;DP=3045;MQ=60;set=variant3-variant5-variant6-variant13-variant15-variant34-variant35-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:121,139:260:99:4002,0,3262:69,52,79,60
chr1	89737161	.	CA	C	3772.57	PASS	AC=1;AF=0.767;AN=2;DP=13137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,138:268:99:3286,0,2942:70,60,79,59
chr1	89835220	.	C	A	1286.06	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=4.076;FractionInformativeReads=1;MQ=60;MQRankSum=1.725;QD=9.12;ReadPosRankSum=0.594;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:84,57:141:99:1314,0,2097:44,40,25,32
chr1	89835256	.	G	C	1297.04	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=1.388;FractionInformativeReads=1;MQ=60;MQRankSum=1.478;QD=9.2;ReadPosRankSum=-0.558;SOR=0.844;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:87,54:141:99:1325,0,2233:37,50,21,33
chr1	89845926	.	GT	G	1404.85	PASS	AC=2;AF=0.92;AN=2;DP=2639;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1646,165,0:0,0,31,24
chr1	89847372	.	G	T	1246.92	PASS	AC=1;AF=0.791;AN=2;DP=6303;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,75:154:99:1699,0,2073:40,39,43,32
chr1	89847411	.	C	T	1318.78	PASS	AC=1;AF=0.791;AN=2;DP=6406;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,76:156:99:1890,0,2164:41,39,41,35
chr1	89847444	.	A	G	1338.45	PASS	AC=1;AF=0.791;AN=2;DP=6234;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,75:153:99:2063,0,2056:39,39,40,35
chr1	89849201	.	C	G	3125.44	PASS	AC=2;AF=0.92;AN=2;DP=4350;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2364,234,0:0,0,42,36
chr1	89849256	.	G	A	972.65	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.284;QD=11.18;ReadPosRankSum=0.913;SOR=0.741;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,43:87:99:1001,0,1161:23,21,23,20
chr1	89849350	.	G	A	2628.18	PASS	AC=2;AF=0.92;AN=2;DP=3295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2501,246,0:0,0,44,38
chr1	89849441	.	T	G	2189.15	PASS	AC=2;AF=0.92;AN=2;DP=3720;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3198,315,0:0,0,51,54
chr1	89849574	.	G	A	1294.23	PASS	AC=2;AF=0.859;AN=2;DP=1854;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1520,134,0:0,0,17,28
chr1	89849742	.	A	T	840.11	PASS	AC=2;AF=0.92;AN=2;DP=2217;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1164,116,0:0,0,16,23
chr1	89851100	.	G	GT	46.7	PASS	AC=2;AF=0.907;AN=2;DP=276;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant35-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,10:11:7:221,7,0:0,1,0,10
chr1	89885854	.	G	A	883.42	PASS	AC=2;AF=0.92;AN=2;DP=2484;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1731,173,0:0,0,24,34
chr1	89888530	.	C	T	3329.3	PASS	AC=2;AF=0.92;AN=2;DP=5591;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3229,302,0:0,0,67,34
chr1	89888552	.	T	A	4753.13	PASS	AC=2;AF=0.92;AN=2;DP=7437;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4429,429,0:0,0,89,54
chr1	89888585	.	C	G	8758.22	PASS	AC=2;AF=0.92;AN=2;DP=9590;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:8660,587,0:0,0,116,78
chr1	89888588	.	G	T	8709.61	PASS	AC=2;AF=0.92;AN=2;DP=9715;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:8685,590,0:0,0,117,79
chr1	90048248	.	C	T	2333.56	PASS	AC=2;AF=0.55;AN=2;DP=3814;set=variant-variant2-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant21-variant23-variant24-variant27-variant30-variant31-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:6348,582,0:0,0,95,100
chr1	90058936	.	CAA	CA,C,CAAA	336.11	PASS	AC=1,0,0;AF=0.5,0.116,0.012;AN=2;DP=2533;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:46:99:18,7,16,5
chr1	90059965	.	G	A	1106.81	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=3.183;FractionInformativeReads=1;MQ=60;MQRankSum=-0.084;QD=13.5;ReadPosRankSum=-0.354;SOR=0.379;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,37:82:99:1135,0,1475:13,32,14,23
chr1	90060824	.	C	T	8606.3	PASS	AC=2;AF=0.966;AN=2;DP=9805;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,245:245:99:8250,735,0:0,0,91,154
chr1	90098715	.	G	C	473.69	PASS	AC=1;AF=0.657;AN=2;DP=2222;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:465,0,649:12,12,11,9
chr1	90152146	.	C	T	1576.91	PASS	AC=1;AF=0.5;AN=2;DP=280;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:67,62:129:99:1485,0,1735:28,39,27,35
chr1	90171835	.	C	T	3105.3	PASS	AC=2;AF=1;AN=2;DP=3488;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,52:53:99:1713,149,0:0,1,35,17
chr1	90178743	.	A	G	1919.41	PASS	AC=2;AF=1;AN=2;DP=4181;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3362,341,0:0,0,58,56
chr1	90180552	.	G	A	1778.93	PASS	AC=1;AF=0.5;AN=2;DP=300;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,99:153:99:2522,0,1201:20,34,49,50
chr1	90181372	.	A	T	582.04	PASS	AC=1;AF=0.5;AN=2;DP=86;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:477,0,531:12,7,10,8
chr1	90181938	.	A	G	974.53	PASS	AC=1;AF=0.5;AN=2;DP=146;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,40:70:99:1208,0,844:21,9,27,13
chr1	90182944	.	G	A	2680.28	PASS	AC=1;AF=0.5;AN=2;DP=473;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:122,116:238:99:3031,0,3174:57,65,60,56
chr1	90185106	.	C	G	816.84	PASS	AC=1;AF=0.603;AN=2;DP=1232;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:507,0,409:1,11,1,14
chr1	90286636	.	TGCTGCC	T	26183.2	PASS	AC=2;AF=0.977;AN=2;DP=25638;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,414:414:99:18233,1249,0:0,0,197,217
chr1	90287642	.	A	C	186.16	PASS	AC=1;AF=0.542;AN=2;DP=239;FractionInformativeReads=1;MQ=60;set=variant12-variant13-variant18-variant20-variant23-variant27-variant28-variant29-variant32-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:303,0,517:11,10,8,8
chr1	90459744	.	A	G	1629.27	PASS	AC=2;AF=0.966;AN=2;DP=2868;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1888,171,0:0,0,35,22
chr1	90470915	.	T	A	856.7	PASS	AC=2;AF=0.73;AN=2;DP=2870;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2305,212,0:0,0,33,38
chr1	90486412	.	T	G	1806.11	PASS	AC=2;AF=0.757;AN=2;DP=5789;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4162,420,0:0,0,78,62
chr1	90493026	.	G	A	665.68	PASS	AC=2;AF=0.73;AN=2;DP=3221;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2407,210,0:0,0,39,31
chr1	90493918	.	G	GA	556.2	PASS	AC=2;AF=0.757;AN=2;DP=1631;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:99:921,99,0:0,0,19,13
chr1	91177864	.	T	A	1326.49	PASS	AC=1;AF=0.5;AN=2;DP=118;FS=4.509;FractionInformativeReads=0.992;MQ=60;MQRankSum=-1.448;QD=11.24;ReadPosRankSum=-0.594;SOR=0.897;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,53:117:99:1355,0,1567:34,30,23,30
chr1	91182880	.	G	T	521.06	PASS	AC=1;AF=0.567;AN=2;DP=477;MQ=60;set=variant5-variant7-variant10-variant17-variant18-variant22-variant23-variant26-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:378,0,368:6,9,3,11
chr1	91447985	.	C	T	3650.43	PASS	AC=2;AF=0.932;AN=2;DP=4190;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2486,228,0:0,0,26,50
chr1	91727781	.	C	G	755.11	PASS	AC=1;AF=0.611;AN=2;DP=928;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant17-variant19-variant23-variant24-variant25-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:815,0,849:19,13,19,14
chr1	91728053	.	G	A	2749.48	PASS	AC=2;AF=1;AN=2;DP=4134;FS=0;MQ=60;MQRankSum=-0.942;ReadPosRankSum=1.428;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2593,252,0:0,0,36,48
chr1	91728202	.	T	C	431.9	PASS	AC=2;AF=1;AN=2;DP=550;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:589,51,0:0,0,4,13
chr1	91739208	.	C	T	1111.35	PASS	AC=2;AF=1;AN=2;DP=1414;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:758,66,0:0,0,17,5
chr1	91739414	.	G	A	1334.73	PASS	AC=2;AF=1;AN=2;DP=1151;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:810,66,0:0,0,5,17
chr1	91740105	.	T	G	2313.23	PASS	AC=2;AF=1;AN=2;DP=3132;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.253;ReadPosRankSum=-0.506;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1683,153,0:0,0,35,16
chr1	91781304	.	T	C	868.94	PASS	AC=2;AF=1;AN=2;DP=617;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:502,48,0:0,0,12,4
chr1	91781413	.	T	G	945.9	PASS	AC=2;AF=0.782;AN=2;DP=2365;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1886,180,0:0,0,35,25
chr1	91813184	.	C	T	793.44	PASS	AC=2;AF=1;AN=2;DP=1019;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:532,42,0:0,0,3,11
chr1	91841301	.	T	C	864.65	PASS	AC=2;AF=1;AN=2;DP=1520;FS=0;MQ=60;MQRankSum=-0.289;ReadPosRankSum=-0.144;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1399,125,0:0,0,11,31
chr1	91846374	.	C	A	2901.57	PASS	AC=2;AF=1;AN=2;DP=4109;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2353,231,0:0,0,37,40
chr1	91846595	.	T	TA	220.74	PASS	AC=2;AF=1;AN=2;DP=711;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:294,24,0:0,0,3,5
chr1	91846654	.	A	T	196.77	PASS	AC=2;AF=1;AN=2;DP=161;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:131,9,0:0,0,0,3
chr1	91851253	.	T	C	2751.93	PASS	AC=2;AF=1;AN=2;DP=3664;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2715,267,0:0,0,42,47
chr1	91859795	.	T	C	6540.7	PASS	AC=2;AF=1;AN=2;DP=6846;FS=0;MQ=60;MQRankSum=0.152;ReadPosRankSum=0.59;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:4085,354,0:0,0,62,55
chr1	91859801	.	A	G	1645.35	PASS	AC=1;AF=0.595;AN=2;DP=3142;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant17-variant19-variant22-variant23-variant24-variant25-variant31-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,48:118:99:1216,0,1649:35,35,24,24
chr1	91967142	.	G	GC	833.75	PASS	AC=1;AF=0.533;AN=2;DP=862;MQ=60;set=variant5-variant10-variant11-variant13-variant19-variant20-variant21-variant23-variant25-variant28-variant32-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,33:59:99:1026,0,749:18,8,24,9
chr1	91973557	.	T	G	1416.26	PASS	AC=2;AF=1;AN=2;DP=2427;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1607,173,0:0,0,24,34
chr1	91978963	.	T	TAA	61.16	PASS	AC=1;AF=0.614;AN=2;DP=165;MQ=60;set=variant3-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant17-variant19-variant21-variant22-variant24-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:143,0,103:0,3,0,4
chr1	91980447	.	A	G	3854.16	PASS	AC=2;AF=0.817;AN=2;DP=4743;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3057,300,0:0,0,58,42
chr1	91989572	.	T	G	1373.56	PASS	AC=2;AF=0.955;AN=2;DP=1530;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1317,108,0:0,0,29,7
chr1	91990487	.	T	C	9548.47	PASS	AC=1;AF=0.594;AN=2;DP=9977;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:129,139:268:99:3550,0,3070:68,61,70,69
chr1	91991268	.	T	A	2034.93	PASS	AC=2;AF=0.943;AN=2;DP=3088;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1460,167,0:0,0,13,43
chr1	92108274	.	T	TA,TAA	1057.41	PASS	AC=1,0;AF=0.524,0.024;AN=2;DP=1063;MQ=60;set=variant2-variant13-variant14-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:48:99:14,19,9,6
chr1	92108899	.	C	T	2668.59	PASS	AC=1;AF=0.81;AN=2;DP=9765;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,101:214:99:2535,0,2862:53,60,50,51
chr1	92109261	.	G	A	1697.16	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=3.076;FractionInformativeReads=1;MQ=60;MQRankSum=-0.79;QD=12.57;ReadPosRankSum=-3.094;SOR=0.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,65:135:99:1725,0,1862:37,33,30,35
chr1	92109409	.	G	A	1261.09	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=1.574;FractionInformativeReads=1;MQ=60;MQRankSum=-0.801;QD=12.36;ReadPosRankSum=1.15;SOR=0.866;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,48:102:99:1289,0,1562:27,27,22,26
chr1	92147961	.	CTT	CT,CTTT,CTTTTT,C,CTTTT	354.5	PASS	AC=0,0,1,0,0;AF=0.212,0.227,0.076,0.015,0.03;AN=2;DP=1913;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-filterInvariant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-filterInvariant35-filterInvariant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:34:99:13,4,11,6
chr1	92148013	.	C	T	1399.29	PASS	AC=1;AF=0.5;AN=2;DP=1492;MQ=60;set=variant2-variant5-variant6-variant7-variant17-variant21-variant22-variant23-variant25-variant26-variant31-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,47:88:99:1286,0,1131:22,19,24,23
chr1	92148227	.	C	G	5403.88	PASS	AC=1;AF=0.767;AN=2;DP=5251;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,50:110:99:1416,0,1703:32,28,25,25
chr1	92174260	.	A	G	6407.95	PASS	AC=1;AF=0.898;AN=2;DP=8474;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:86,78:164:99:1981,0,2235:37,49,39,39
chr1	92182292	.	T	C	981.79	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=0.853;FractionInformativeReads=1;MQ=60;MQRankSum=0.868;QD=12.43;ReadPosRankSum=1.055;SOR=0.823;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,41:79:99:1010,0,906:16,22,16,25
chr1	92185172	.	A	G	152.06	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;set=variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:63:180,0,63:1,1,2,4
chr1	92185657	.	C	T	2081.28	PASS	AC=1;AF=0.671;AN=2;DP=2448;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,44:81:99:1235,0,1033:19,18,15,29
chr1	92195310	.	G	A	703.64	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=4.71;FractionInformativeReads=1;MQ=60;MQRankSum=-0.908;QD=9.51;ReadPosRankSum=-2.558;SOR=0.331;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,29:74:99:732,0,1373:30,15,16,13
chr1	92195601	.	G	A	629.49	PASS	AC=1;AF=0.586;AN=2;DP=978;MQ=60;set=variant3-variant4-variant6-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:309,0,480:1,12,3,7
chr1	92200437	.	T	C	1488.73	PASS	AC=1;AF=0.5;AN=2;DP=138;FS=5.187;FractionInformativeReads=1;MQ=60;MQRankSum=-1.265;QD=10.79;ReadPosRankSum=-1.011;SOR=0.763;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:78,60:138:99:1517,0,1992:35,43,33,27
chr1	92200593	.	A	G	1232.4	PASS	AC=1;AF=0.724;AN=2;DP=1733;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:687,0,524:3,11,4,16
chr1	92200597	.	G	A	1163.5	PASS	AC=1;AF=0.611;AN=2;DP=1093;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:326,0,795:4,14,3,10
chr1	92200627	.	T	C	636.52	PASS	AC=1;AF=0.977;AN=2;DP=1082;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:563,0,237:0,7,2,12
chr1	92200634	.	C	T	242.86	PASS	AC=1;AF=0.525;AN=2;DP=405;MQ=60;set=variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant21-variant22-variant23-variant24-variant27-variant32-variant34-variant35-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:528,0,213:0,5,2,9
chr1	92224067	.	C	T	465.64	PASS	AC=1;AF=0.524;AN=2;DP=737;MQ=60;set=variant2-variant3-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant24-variant30-variant31-variant32-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:579,0,407:11,4,14,5
chr1	92224079	.	G	C	543.16	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.283;FractionInformativeReads=1;MQ=60;MQRankSum=-0.196;QD=13.25;ReadPosRankSum=0.587;SOR=0.995;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:571,0,483:13,7,15,6
chr1	92262874	.	T	C	205.52	PASS	AC=1;AF=0.676;AN=2;DP=1716;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,33:48:99:934,0,373:11,4,24,9
chr1	92414993	.	T	C	772.68	PASS	AC=1;AF=0.829;AN=2;DP=1335;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:404,0,464:12,6,9,5
chr1	92415049	.	G	C	1784.45	PASS	AC=1;AF=0.594;AN=2;DP=703;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant22-variant26-variant28-variant29-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:715,0,625:16,7,18,9
chr1	92415118	.	C	A	1727.51	PASS	AC=1;AF=0.829;AN=2;DP=2881;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,38:74:99:909,0,873:17,19,20,18
chr1	92428495	.	C	A	1249.44	PASS	AC=1;AF=0.895;AN=2;DP=1350;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:634,0,439:5,13,12,15
chr1	92433595	.	C	T	430.39	PASS	AC=1;AF=0.563;AN=2;DP=89;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant8-variant26-variant28-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:248,0,312:8,0,7,0
chr1	92442695	.	A	C	4465.22	PASS	AC=1;AF=0.563;AN=2;DP=875;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant8-variant26-variant28-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,69:113:99:1767,0,920:25,19,37,32
chr1	92445257	.	C	G	1386.25	PASS	AC=1;AF=0.579;AN=2;DP=1857;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant10-variant11-variant12-variant14-variant17-variant20-variant21-variant23-variant27-variant28-variant33-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,36:92:99:782,0,1454:25,31,19,17
chr1	92446112	.	T	C	436.35	PASS	AC=1;AF=0.826;AN=2;DP=554;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:154,0,133:4,0,3,2
chr1	92446398	.	T	A	3255.89	PASS	AC=1;AF=0.833;AN=2;DP=3401;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:794,0,762:15,16,15,16
chr1	92446961	.	T	TTGTA	586.36	PASS	AC=1;AF=0.575;AN=2;DP=643;MQ=60;set=variant-variant2-variant8-variant10-variant11-variant12-variant14-variant17-variant20-variant21-variant23-variant27-variant28-variant33-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:194,0,250:3,2,2,3
chr1	92447004	.	A	G	669.12	PASS	AC=1;AF=0.837;AN=2;DP=799;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,189:3,3,3,1
chr1	92457843	.	C	T	1518.79	PASS	AC=1;AF=0.837;AN=2;DP=1919;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:405,0,445:12,8,8,7
chr1	92457969	.	CAAA	CAA,CA,C	250.7	PASS	AC=1,0,0;AF=0.415,0.171,0.073;AN=2;DP=1726;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:27:78:5,4,8,10
chr1	92480009	.	C	T	2398.81	PASS	AC=1;AF=0.556;AN=2;DP=418;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant8-variant13-variant26-variant28-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,24:39:99:598,0,359:6,9,10,14
chr1	92568263	.	A	G	600.67	PASS	AC=1;AF=0.821;AN=2;DP=1478;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,24:39:99:585,0,379:5,10,8,16
chr1	92605215	.	CTT	C	331.52	PASS	AC=1;AF=0.821;AN=2;DP=1113;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,21:31:99:843,0,367:2,8,6,15
chr1	92605350	.	G	T	157.4	PASS	AC=1;AF=0.986;AN=2;DP=204;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.322;ReadPosRankSum=-1.517;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:67:67,0,159:2,3,1,2
chr1	92637073	.	CTTA	C	72.63	PASS	AC=1;AF=0.5;AN=2;DP=92;MQ=60;set=variant7-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:433,0,570:3,10,3,9
chr1	92646021	.	G	A	1277.57	PASS	AC=1;AF=0.821;AN=2;DP=3259;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,34:70:99:903,0,1023:18,18,16,18
chr1	92647223	.	A	G	770.78	PASS	AC=1;AF=0.859;AN=2;DP=1976;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,29:47:99:784,0,548:8,10,17,12
chr1	92647532	.	C	A	3328.25	PASS	AC=1;AF=0.977;AN=2;DP=4440;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,52:92:99:1325,0,1022:18,22,29,23
chr1	92649292	.	A	T	399.36	PASS	AC=1;AF=0.859;AN=2;DP=504;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:174,0,277:6,2,5,0
chr1	92649335	.	A	G	462.7	PASS	AC=1;AF=0.859;AN=2;DP=1202;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:249,0,510:12,2,5,2
chr1	92650349	.	C	T	1792.76	PASS	AC=1;AF=0.859;AN=2;DP=2924;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:930,0,1230:9,30,7,25
chr1	92711067	.	A	T	653.43	PASS	AC=1;AF=0.697;AN=2;DP=1535;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:508,0,318:8,4,13,6
chr1	92711972	.	C	G	197.8	PASS	AC=1;AF=0.692;AN=2;DP=299;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant27-variant28-variant29-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:96:96,0,330:6,3,3,0
chr1	92712266	.	C	T	2020.3	PASS	AC=2;AF=1;AN=2;DP=2533;FS=0;MQRankSum=-0.65;ReadPosRankSum=1.66;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2122,198,0:0,0,23,43
chr1	92712598	.	GAA	G	1128.69	PASS	AC=1;AF=0.682;AN=2;DP=2957;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,49:100:99:1869,0,1966:26,25,28,21
chr1	92735359	.	T	C	496.3	PASS	AC=1;AF=0.682;AN=2;DP=1985;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:577,0,832:14,20,11,14
chr1	92755943	.	G	A	181.76	PASS	AC=1;AF=0.721;AN=2;DP=414;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:196,0,192:1,4,1,5
chr1	92764828	.	T	A	576.54	PASS	AC=2;AF=1;AN=2;DP=1315;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1209,114,0:0,0,11,27
chr1	92765848	.	A	T	907.3	PASS	AC=1;AF=0.682;AN=2;DP=2473;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:752,0,851:16,21,12,20
chr1	92799151	.	C	T	892.82	PASS	AC=2;AF=0.866;AN=2;DP=626;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:477,33,0:0,0,0,11
chr1	92852504	.	A	G	1851.13	PASS	AC=2;AF=0.866;AN=2;DP=1923;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1479,138,0:0,0,29,17
chr1	92941357	.	A	G	1676.83	PASS	AC=1;AF=0.803;AN=2;DP=2073;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,32:54:99:892,0,571:13,9,17,15
chr1	92946479	.	G	A	2506.75	PASS	AC=1;AF=0.829;AN=2;DP=3915;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,36:90:99:895,0,1435:27,27,23,13
chr1	92952217	.	CA	C	740.54	PASS	AC=2;AF=1;AN=2;DP=1214;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1132,84,0:0,0,19,9
chr1	92974595	.	G	A	4722.73	PASS	AC=1;AF=0.829;AN=2;DP=5738;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,59:146:99:1341,0,2207:41,46,30,29
chr1	92975050	.	A	AT	496.42	PASS	AC=1;AF=0.586;AN=2;DP=1225;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:212,0,393:8,11,0,13
chr1	92975244	.	T	A	3311.87	PASS	AC=1;AF=0.784;AN=2;DP=3192;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,41:103:99:943,0,1717:32,30,22,19
chr1	92975262	.	C	A	3391.2	PASS	AC=1;AF=0.784;AN=2;DP=3355;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,43:101:99:1015,0,1549:30,28,21,22
chr1	92975493	.	A	G	5741.01	PASS	AC=1;AF=0.795;AN=2;DP=5927;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,84:165:99:2313,0,2128:47,34,55,29
chr1	92975938	.	T	C	12963.7	PASS	AC=1;AF=0.784;AN=2;DP=12412;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:151,144:295:99:3708,0,4067:79,72,67,77
chr1	92976023	.	T	G	13045.3	PASS	AC=1;AF=0.829;AN=2;DP=14186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,155:315:99:3881,0,4289:76,84,73,82
chr1	92976590	.	G	A	1497.69	PASS	AC=1;AF=0.829;AN=2;DP=2300;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,33:59:99:833,0,658:14,12,18,15
chr1	92977275	.	A	G	1616.84	PASS	AC=1;AF=0.829;AN=2;DP=1602;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:564,0,528:15,2,15,1
chr1	92978722	.	TA	T	3169.12	PASS	AC=1;AF=0.792;AN=2;DP=3418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,55:104:99:1247,0,1072:31,18,31,24
chr1	92979354	.	A	G	3584.46	PASS	AC=1;AF=0.829;AN=2;DP=6177;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,81:144:99:1917,0,1433:29,34,37,44
chr1	92979681	.	TTA	T	130.95	PASS	AC=1;AF=0.846;AN=2;DP=407;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:138,0,219:1,5,1,3
chr1	93029453	.	A	G	546.35	PASS	AC=1;AF=0.829;AN=2;DP=696;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:176,0,370:4,10,1,6
chr1	93071048	.	G	T	1391.68	PASS	AC=1;AF=0.884;AN=2;DP=1428;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:372,0,336:2,9,5,9
chr1	93089823	.	T	C	2648.6	PASS	AC=1;AF=0.884;AN=2;DP=2892;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,20:64:99:454,0,1104:19,25,7,13
chr1	93128514	.	TA	TAA,TAAA,T	248.87	PASS	AC=1,0,0;AF=0.605,0.013,0.013;AN=2;DP=987;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:11:90:1,5,1,4
chr1	93128809	.	C	A	172.12	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,8:10:19:208,0,19:1,1,5,3
chr1	93128854	.	A	G	1035.94	PASS	AC=1;AF=0.884;AN=2;DP=1329;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:388,0,243:7,4,8,7
chr1	93160902	.	T	C	4266.85	PASS	AC=1;AF=0.884;AN=2;DP=4836;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,68:103:99:1904,0,838:15,20,26,42
chr1	93163385	.	A	G	2269.55	PASS	AC=1;AF=0.784;AN=2;DP=2057;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:569,0,442:12,4,15,7
chr1	93167854	.	A	G	1320.16	PASS	AC=1;AF=0.895;AN=2;DP=1552;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,19:51:99:449,0,835:12,20,5,14
chr1	93306317	.	G	A	1665.5	PASS	AC=1;AF=0.731;AN=2;DP=6441;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,58:147:99:1247,0,2343:50,39,27,31
chr1	93307908	.	T	A	10364.8	PASS	AC=1;AF=0.878;AN=2;DP=11874;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,137:281:99:3604,0,4007:71,73,72,65
chr1	93308168	.	T	TA	2521.14	PASS	AC=1;AF=0.75;AN=2;DP=7769;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,88:178:99:2735,0,2833:38,52,41,47
chr1	93308798	.	G	A	1984.78	PASS	AC=1;AF=0.886;AN=2;DP=2915;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,30:70:99:772,0,1164:15,25,12,18
chr1	93308853	.	C	A	1291.37	PASS	AC=1;AF=0.884;AN=2;DP=1660;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:300,0,757:6,16,5,10
chr1	93426866	.	T	C	2951.9	PASS	AC=2;AF=1;AN=2;DP=4185;FS=0;MQ=60;MQRankSum=-1.022;ReadPosRankSum=1.89;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:3704,252,0:0,0,50,32
chr1	93426869	.	G	C	1854.4	PASS	AC=2;AF=0.878;AN=2;DP=4138;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:3704,252,0:0,0,52,32
chr1	93545157	.	G	A	2958.15	PASS	AC=1;AF=0.966;AN=2;DP=4527;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:57,35:92:99:981,0,1781:30,27,24,11
chr1	93580581	.	G	C	4494.87	PASS	AC=2;AF=1;AN=2;DP=5718;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3097,312,0:0,0,61,43
chr1	93580992	.	C	T	1810.69	PASS	AC=1;AF=0.857;AN=2;DP=3198;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,28:69:99:636,0,1085:27,14,19,9
chr1	93581024	.	T	C	926.9	PASS	AC=1;AF=0.713;AN=2;DP=4637;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,39:102:99:827,0,1588:38,25,22,17
chr1	93602194	.	C	T	994.85	PASS	AC=2;AF=0.905;AN=2;DP=4249;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3351,332,0:0,0,68,43
chr1	93603183	.	C	CAT,CATGTGTATATATATACACACAT	5183.81	PASS	AC=2,0;AF=0.893,0.012;AN=2;DP=10546;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:211:99:0,0,102,109
chr1	93616103	.	C	T	6955.47	PASS	AC=1;AF=0.5;AN=2;DP=496;FS=1.098;FractionInformativeReads=1;MQ=60;MQRankSum=1.795;QD=14.02;ReadPosRankSum=0.419;SOR=0.777;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:230,266:496:99:6984,0,5815:119,111,143,123
chr1	93616202	.	T	C	8289.29	PASS	AC=1;AF=0.75;AN=2;DP=24902;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:292,295:587:99:7284,0,7413:143,149,148,147
chr1	93617403	.	T	G	2444.27	PASS	AC=2;AF=0.775;AN=2;DP=9739;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,225:225:99:7210,674,0:0,0,96,129
chr1	93617546	.	T	C	6700.16	PASS	AC=2;AF=0.881;AN=2;DP=7640;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:5074,472,0:0,0,83,75
chr1	93617901	.	A	G	1371.94	PASS	AC=1;AF=0.5;AN=2;DP=226;FractionInformativeReads=0.991;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,50:108:99:1339,0,1644:30,28,22,28
chr1	93620393	.	G	A	2481.89	PASS	AC=1;AF=0.713;AN=2;DP=7273;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,108:192:99:2999,0,2292:24,60,32,76
chr1	93621483	.	A	G	272.85	PASS	AC=1;AF=0.75;AN=2;DP=1023;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:352,0,223:5,4,9,3
chr1	93646207	.	T	C	4171.66	PASS	AC=1;AF=0.75;AN=2;DP=11363;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,120:268:99:2795,0,3632:79,69,63,57
chr1	93648816	.	A	G	1565.08	PASS	AC=2;AF=0.881;AN=2;DP=1873;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1556,120,0:0,0,36,4
chr1	93649732	.	A	G	484.29	PASS	AC=1;AF=0.763;AN=2;DP=804;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:225,0,273:3,7,3,5
chr1	93659350	.	A	T	1043.39	PASS	AC=2;AF=0.89;AN=2;DP=1006;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:883,87,0:0,0,10,19
chr1	93672723	.	A	C	1818.47	PASS	AC=1;AF=0.857;AN=2;DP=2385;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,34:55:99:933,0,450:13,8,21,13
chr1	93676314	.	A	G	303.31	PASS	AC=1;AF=0.75;AN=2;DP=1072;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:565,0,317:8,3,14,2
chr1	93676578	.	A	G	398.69	PASS	AC=1;AF=0.713;AN=2;DP=963;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:459,0,248:1,7,4,12
chr1	93683210	.	A	G	118.24	PASS	AC=1;AF=0.574;AN=2;DP=489;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant21-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:193,0,232:6,3,6,3
chr1	93683463	.	G	A	237.12	PASS	AC=1;AF=0.5;AN=2;DP=42;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:180,0,356:3,9,5,4
chr1	93687091	.	G	T	58.54	PASS	AC=1;AF=0.667;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant9-variant10-variant11-variant13-variant19-variant21-variant29-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:72:117,0,72:2,2,3,2
chr1	93691855	.	GTT	GT,GTTT,G	332.83	PASS	AC=0,0,1;AF=0.44,0.04,0.06;AN=2;DP=632;set=variant2-filterInvariant4-variant5-filterInvariant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant13-variant16-variant19-filterInvariant22-variant25-filterInvariant26-variant27-variant30-variant31-variant32-variant34-filterInvariant36-variant37-variant41-variant42-variant43	GT:DP:GQ:SB	0/3:7:73:2,1,2,2
chr1	93692070	.	A	T	103.17	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=0.857;MQ=60;MQRankSum=0.736;QD=14.74;ReadPosRankSum=0.736;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:27:131,0,27:0,1,1,4
chr1	93692081	.	AAT	A	60.24	PASS	AC=2;AF=0.625;AN=2;DP=19;FS=0;MQ=60;MQRankSum=0.727;set=variant19-variant27-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:73,6,0:0,0,0,2
chr1	93698141	.	T	G	576.37	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=3.974;FractionInformativeReads=1;MQ=60;MQRankSum=0.789;QD=10.11;ReadPosRankSum=1.309;SOR=1.302;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,23:57:99:605,0,905:13,21,6,17
chr1	93698222	.	C	G	195.14	PASS	AC=1;AF=0.577;AN=2;DP=175;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant10-variant11-variant13-variant16-variant19-variant31-variant32-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:102,0,202:2,5,1,2
chr1	93704793	.	CT	C	158.07	PASS	AC=1;AF=0.591;AN=2;DP=406;MQ=60;set=variant-variant2-variant4-variant9-variant10-variant11-variant13-variant14-variant16-variant19-variant21-variant25-variant29-variant31-variant32-variant34-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:279,0,123:5,1,10,1
chr1	93720153	.	G	T	1022.28	PASS	AC=1;AF=0.5;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,21:78:99:444,0,1333:28,29,7,14
chr1	93730129	.	G	A	40.73	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;ReadPosRankSum=-0.198;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:67:123,0,67:2,0,3,2
chr1	93811569	.	A	G	1682.11	PASS	AC=1;AF=0.775;AN=2;DP=5999;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,101:174:99:2471,0,1699:39,34,57,44
chr1	93826319	.	G	A	366.29	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=1.617;FractionInformativeReads=1;MQ=60;MQRankSum=1.013;QD=13.08;ReadPosRankSum=-0.829;SOR=0.33;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:395,0,449:11,4,8,5
chr1	93826455	.	G	A	698.49	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.399;QD=12.04;ReadPosRankSum=1.431;SOR=0.719;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,26:58:99:727,0,825:17,15,14,12
chr1	93826600	.	A	AGGG,AGG,AGGGG	2132.74	PASS	AC=1,0,0;AF=0.613,0.088,0.05;AN=2;DP=5808;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:176:99:61,46,58,11
chr1	93826602	.	G	T	2512.13	PASS	AC=1;AF=0.5;AN=2;DP=183;FS=33.395;FractionInformativeReads=1;MQ=59.84;MQRankSum=5.518;QD=13.73;ReadPosRankSum=4.527;SOR=0.094;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:76,107:183:99:2540,0,2806:62,14,61,46
chr1	93827456	.	T	A	8583.64	PASS	AC=2;AF=0.881;AN=2;DP=9354;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,207:207:99:6748,620,0:0,0,70,137
chr1	93827995	.	C	CT,CTT	908.7	PASS	AC=1,0;AF=0.714,0.024;AN=2;DP=2007;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:37:99:10,11,6,10
chr1	93913870	.	G	A	1414.63	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=1.591;FractionInformativeReads=1;MQ=60;MQRankSum=-0.859;QD=13.22;ReadPosRankSum=2.533;SOR=0.513;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,61:107:99:1443,0,993:18,28,27,34
chr1	93998640	.	AT	A	1364.17	PASS	AC=1;AF=0.684;AN=2;DP=2811;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,33:70:99:1012,0,1171:13,24,10,23
chr1	94012287	.	G	A	462.99	PASS	AC=2;AF=0.85;AN=2;DP=400;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:451,33,0:0,0,10,1
chr1	94017451	.	T	G	3195.41	PASS	AC=1;AF=0.5;AN=2;DP=252;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.199;QD=12.68;ReadPosRankSum=2.696;SOR=0.679;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:134,118:252:99:3224,0,3749:72,62,63,55
chr1	94041787	.	G	GAC	3454.94	PASS	AC=2;AF=0.909;AN=2;DP=3792;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:3327,237,0:0,0,26,52
chr1	94054382	.	T	C	376.29	PASS	AC=1;AF=0.73;AN=2;DP=1196;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,22:37:99:503,0,404:11,4,13,9
chr1	94057720	.	T	A	223.42	PASS	AC=1;AF=0.684;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant12-variant13-variant15-variant18-variant19-variant20-variant23-variant25-variant26-variant30-variant31-variant32-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:221,0,228:5,3,5,2
chr1	94312482	.	T	TC	1637.7	PASS	AC=2;AF=1;AN=2;DP=5512;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3959,322,0:0,0,54,51
chr1	94312528	.	G	GC	1548.51	PASS	AC=2;AF=1;AN=2;DP=4706;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:3266,243,0:0,0,41,39
chr1	94312533	.	G	GC	1387.08	PASS	AC=2;AF=1;AN=2;DP=3709;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2909,196,0:0,0,24,39
chr1	94312542	.	G	GC	1267.73	PASS	AC=2;AF=1;AN=2;DP=3320;FS=0;MQ=60;MQRankSum=-1.091;ReadPosRankSum=-1.561;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2835,190,0:0,0,22,38
chr1	94312544	.	G	GC	1267.73	PASS	AC=2;AF=1;AN=2;DP=3156;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2745,184,0:0,0,21,36
chr1	94312554	.	A	AG	1087.73	PASS	AC=2;AF=1;AN=2;DP=2896;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2385,160,0:0,0,21,32
chr1	94312558	.	G	GC	952.73	PASS	AC=2;AF=0.716;AN=2;DP=2201;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:2295,154,0:0,0,18,29
chr1	94312566	.	G	T	916.77	PASS	AC=2;AF=0.716;AN=2;DP=2098;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1980,132,0:0,0,18,26
chr1	94312567	.	T	C	916.77	PASS	AC=2;AF=0.716;AN=2;DP=2091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1980,132,0:0,0,18,26
chr1	94312571	.	G	GC	952.73	PASS	AC=2;AF=0.716;AN=2;DP=2044;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1890,126,0:0,0,17,24
chr1	94312573	.	G	GC	907.73	PASS	AC=2;AF=0.716;AN=2;DP=2000;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1890,126,0:0,0,15,22
chr1	94312576	.	G	GC	817.73	PASS	AC=2;AF=1;AN=2;DP=2478;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1665,111,0:0,0,17,20
chr1	94312579	.	G	GC,GT	817.73	PASS	AC=2,0;AF=0.602,0.398;AN=2;DP=2357;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:33:99:0,0,17,16
chr1	94312584	.	G	GC	582.7	PASS	AC=2;AF=1;AN=2;DP=2235;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1304,87,0:0,0,13,16
chr1	94334766	.	T	TA	367.21	PASS	AC=1;AF=0.775;AN=2;DP=2025;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,28:41:99:808,0,324:5,8,13,15
chr1	94343233	.	T	C	2428.49	PASS	AC=1;AF=0.776;AN=2;DP=5899;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,73:157:99:1769,0,2150:41,43,37,36
chr1	94344580	.	C	A	1211.26	PASS	AC=1;AF=0.548;AN=2;DP=4406;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,59:145:99:1759,0,2660:65,21,49,10
chr1	94344840	.	A	C	1870.96	PASS	AC=1;AF=0.542;AN=2;DP=3565;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant17-variant19-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,54:107:99:1627,0,1663:9,44,11,43
chr1	94350733	.	G	T	51.2	PASS	AC=2;AF=0.813;AN=2;DP=64;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant8-variant9-variant17-variant21-variant23-variant24-variant25-variant26-variant29-variant33-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:177,12,0:0,0,4,0
chr1	94351062	.	TAA	T	1918.38	PASS	AC=1;AF=0.542;AN=2;DP=1563;set=variant-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant17-variant19-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,39:67:99:1513,0,1108:22,6,29,10
chr1	94351328	.	C	T	5648.77	PASS	AC=1;AF=0.569;AN=2;DP=12384;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:209,200:409:99:4926,0,5475:106,103,102,98
chr1	94351768	.	CT	CTT,C,CTTT	3340.2	PASS	AC=1,0,0;AF=0.483,0.069,0.017;AN=2;DP=9800;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	0/1:265:99:71,73,61,60
chr1	94352237	.	G	GT	2103.37	PASS	AC=1;AF=0.578;AN=2;DP=7699;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:120,125:245:99:2826,0,2673:54,66,62,63
chr1	94352553	.	C	CTTTT,CTT,CTTT,CTTTTT	59.5	PASS	AC=0,0,0,1;AF=0.125,0.25,0.125,0.125;AN=2;DP=38;set=variant2-variant8-variant15-variant41	GT:DP:GQ:SB	0/4:3:55:0,1,1,1
chr1	94353029	.	G	GT,GTT	276.29	PASS	AC=1,0;AF=0.577,0.051;AN=2;DP=2677;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:52:99:7,19,9,17
chr1	94353449	.	G	T	1763.29	PASS	AC=1;AF=0.569;AN=2;DP=4596;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:91,68:159:99:1807,0,2583:58,33,41,27
chr1	94353573	.	C	T	4647.45	PASS	AC=1;AF=0.569;AN=2;DP=12112;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:234,193:427:99:4633,0,5633:111,123,108,85
chr1	94360107	.	C	A	397.4	PASS	AC=1;AF=0.542;AN=2;DP=935;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant17-variant19-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,16:39:99:437,0,713:18,5,11,5
chr1	94367097	.	G	A	644.78	PASS	AC=1;AF=0.571;AN=2;DP=1089;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,22:36:99:477,0,322:7,7,12,10
chr1	94374576	.	G	A	1112.09	PASS	AC=1;AF=0.5;AN=2;DP=1413;MQ=60;set=variant4-variant6-variant8-variant10-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:745,0,1062:18,23,20,13
chr1	94374742	.	C	A	1595.69	PASS	AC=1;AF=0.5;AN=2;DP=1554;MQ=60;set=variant4-variant6-variant8-variant10-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,32:78:99:751,0,1014:20,26,12,20
chr1	94458883	.	G	A	1233.11	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=2.35;FractionInformativeReads=1;MQ=60;MQRankSum=-1.355;QD=10.11;ReadPosRankSum=-1.287;SOR=0.96;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,51:122:99:1261,0,1658:35,36,22,29
chr1	94459000	.	A	T	355.13	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.912;QD=11.46;ReadPosRankSum=0.466;SOR=0.556;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:383,0,594:3,16,2,10
chr1	94461717	.	C	A	853.57	PASS	AC=1;AF=0.714;AN=2;DP=591;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant16-variant30-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:1026,0,1051:24,18,25,18
chr1	94461749	.	C	T	1624.14	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=1.449;FractionInformativeReads=1;MQ=60;MQRankSum=1.4;QD=13.31;ReadPosRankSum=0.188;SOR=0.874;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,66:122:99:1652,0,1256:29,27,37,29
chr1	94466659	.	A	G	864.81	PASS	AC=1;AF=0.571;AN=2;DP=799;MQ=60;set=variant3-variant5-variant7-variant10-variant12-variant13-variant16-variant29-variant30-variant33-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,30:51:99:782,0,478:9,12,12,18
chr1	94471075	.	A	G	4479.85	PASS	AC=1;AF=0.915;AN=2;DP=5345;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,60:135:99:1527,0,1868:35,40,29,31
chr1	94471154	.	C	T	1098.3	PASS	AC=1;AF=0.577;AN=2;DP=965;MQ=60;set=variant4-variant5-variant6-variant7-variant13-variant17-variant18-variant24-variant25-variant28-variant29-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,36:85:99:867,0,1349:18,31,14,22
chr1	94473029	.	TGTTGG	T	721.41	PASS	AC=1;AF=0.567;AN=2;DP=336;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant13-variant17-variant18-variant24-variant25-variant28-variant29-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:506,0,826:13,1,10,4
chr1	94473605	.	A	G	256.79	PASS	AC=1;AF=0.563;AN=2;DP=217;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant13-variant17-variant18-variant24-variant25-variant28-variant29-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:235,0,193:5,1,6,1
chr1	94473845	.	T	C	1963.3	PASS	AC=1;AF=0.563;AN=2;DP=1605;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant13-variant17-variant18-variant24-variant25-variant28-variant29-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1792,0,2572:18,21,18,28
chr1	94473846	.	G	A	1757.01	PASS	AC=1;AF=0.5;AN=2;DP=542;MQ=60;set=variant17-variant18-variant24-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,46:87:99:1813,0,2569:19,22,18,28
chr1	94473864	.	C	T	1918.07	PASS	AC=1;AF=0.563;AN=2;DP=1578;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant13-variant17-variant18-variant24-variant25-variant28-variant29-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,41:80:99:1542,0,2554:18,21,16,25
chr1	94473896	.	G	T	870.49	PASS	AC=1;AF=0.563;AN=2;DP=1384;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant13-variant17-variant18-variant24-variant25-variant28-variant29-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,32:74:99:901,0,1067:18,24,10,22
chr1	94474185	.	A	C	498.18	PASS	AC=1;AF=0.563;AN=2;DP=646;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant13-variant17-variant18-variant24-variant25-variant28-variant29-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:444,0,543:14,3,12,2
chr1	94474328	.	T	C	2160.6	PASS	AC=1;AF=0.563;AN=2;DP=2367;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant13-variant17-variant18-variant24-variant25-variant28-variant29-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,84:143:99:2000,0,1505:30,29,38,46
chr1	94474452	.	T	G	1401.03	PASS	AC=1;AF=0.563;AN=2;DP=1333;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant13-variant17-variant18-variant24-variant25-variant28-variant29-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,37:75:99:789,0,951:12,26,18,19
chr1	94476203	.	CT	C	1344.95	PASS	AC=1;AF=0.618;AN=2;DP=1068;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant13-variant17-variant18-variant24-variant25-variant28-variant29-variant31-variant33-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:963,0,831:15,10,17,11
chr1	94476388	.	C	G	1175.14	PASS	AC=1;AF=0.618;AN=2;DP=1443;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant13-variant17-variant18-variant24-variant25-variant28-variant29-variant31-variant33-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,25:71:99:620,0,1212:20,26,11,14
chr1	94476555	.	G	A	109.23	PASS	AC=1;AF=0.819;AN=2;DP=590;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:281,0,224:1,6,4,7
chr1	94476991	.	CT	C	893.04	PASS	AC=1;AF=0.618;AN=2;DP=1283;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant13-variant17-variant18-variant24-variant25-variant28-variant29-variant31-variant33-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,31:77:99:717,0,1508:20,26,11,20
chr1	94480037	.	C	T	371.57	PASS	AC=1;AF=0.594;AN=2;DP=1754;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:647,0,671:14,13,16,10
chr1	94481245	.	A	C	154.73	PASS	AC=1;AF=0.5;AN=2;DP=1000;MQ=60;set=variant2-variant5-variant6-filterInvariant7-variant8-filterInvariant10-filterInvariant11-filterInvariant18-filterInvariant21-filterInvariant24-variant25-filterInvariant26-filterInvariant29-filterInvariant34-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:41,11:52:99:124,0,1484:13,28,11,0
chr1	94495407	.	C	T	491.68	PASS	AC=1;AF=0.603;AN=2;DP=1403;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,15:42:99:508,0,1135:12,15,5,10
chr1	94495417	.	C	T	403.42	PASS	AC=1;AF=0.603;AN=2;DP=1260;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,12:36:99:429,0,1101:11,13,3,9
chr1	94495487	.	G	A	73.33	PASS	AC=1;AF=0.609;AN=2;DP=410;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:251,0,321:2,9,1,7
chr1	94495930	.	T	C	310.28	PASS	AC=1;AF=0.977;AN=2;DP=1584;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:633,0,598:14,7,17,4
chr1	94496253	.	G	A	673.91	PASS	AC=1;AF=0.618;AN=2;DP=1924;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:659,0,796:6,21,5,17
chr1	94497178	.	G	A	482.4	PASS	AC=1;AF=0.692;AN=2;DP=1899;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,18:48:99:484,0,841:21,9,14,4
chr1	94502506	.	C	G	86.16	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.55;QD=12.31;ReadPosRankSum=-0.55;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,121:1,3,0,3
chr1	94502524	.	A	G	172.47	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.198;QD=24.64;ReadPosRankSum=-0.922;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:69:201,0,69:0,2,1,4
chr1	94509226	.	G	T	267.15	PASS	AC=1;AF=0.595;AN=2;DP=336;MQ=60;set=variant-variant7-variant10-variant14-variant16-variant17-variant22-variant23-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:378,0,432:2,11,1,11
chr1	94511533	.	G	A	952.23	PASS	AC=1;AF=0.713;AN=2;DP=3046;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,37:86:99:1082,0,1414:14,35,9,28
chr1	94528192	.	C	T	1145.56	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=2.928;FractionInformativeReads=1;MQ=60;MQRankSum=0.289;QD=13.8;ReadPosRankSum=-0.38;SOR=0.435;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,46:83:99:1174,0,917:23,14,25,21
chr1	94528363	.	C	T	268.06	PASS	AC=1;AF=0.575;AN=2;DP=1190;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant10-variant11-variant15-variant16-variant23-variant27-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,37:65:99:920,0,697:9,19,14,23
chr1	94545124	.	G	T	544.83	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.734;QD=8.38;ReadPosRankSum=-0.569;SOR=0.709;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,23:65:99:573,0,1165:15,27,8,15
chr1	94568491	.	A	G	164.46	PASS	AC=1;AF=0.591;AN=2;DP=846;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant29-variant32-variant35-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:623,0,617:18,4,17,3
chr1	94574342	.	AT	A	115.63	PASS	AC=1;AF=0.55;AN=2;DP=293;MQ=60;set=variant5-variant11-variant16-variant19-variant21-variant28-variant31-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,11:13:14:266,0,14:0,2,2,9
chr1	94578548	.	T	C	1516.64	PASS	AC=1;AF=0.989;AN=2;DP=2134;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:580,0,756:17,8,16,8
chr1	94586844	.	G	A	67.23	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:321,0,128:1,4,2,8
chr1	94620168	.	G	T	719.03	PASS	AC=1;AF=0.5;AN=2;DP=162;FractionInformativeReads=1;MQ=60;set=variant11-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:396,0,698:14,13,10,8
chr1	94637255	.	CAA	C	2628.69	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=2.643;FractionInformativeReads=0.991;MQ=60;MQRankSum=-1.698;QD=22.86;ReadPosRankSum=1.543;SOR=1.016;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,67:114:99:2666,0,1864:30,17,47,20
chr1	94638168	.	GAT	GATAT,GATATAT,GATATATAT,G,GATATATATAT	444.91	PASS	AC=0,1,0,0,0;AF=0.464,0.214,0.036,0.012,0.024;AN=2;DP=2286;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:38:99:9,16,6,7
chr1	94638439	.	A	C	4211.32	PASS	AC=1;AF=0.538;AN=2;DP=6706;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant16-variant18-variant19-variant20-variant22-variant23-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:107,135:242:99:3384,0,2687:50,57,63,72
chr1	94638711	.	C	T	761.59	PASS	AC=1;AF=0.538;AN=2;DP=1188;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant16-variant18-variant19-variant20-variant22-variant23-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:795,0,712:10,17,6,20
chr1	94639337	.	A	G	8972.4	PASS	AC=2;AF=0.989;AN=2;DP=11704;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,287:287:99:8739,857,0:0,0,134,153
chr1	94639447	.	C	T	6647.57	PASS	AC=1;AF=0.966;AN=2;DP=8763;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:90,99:189:99:2776,0,2471:41,49,45,54
chr1	94654921	.	CAAT	C	541.48	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=1.686;FractionInformativeReads=1;MQ=60;MQRankSum=0.529;QD=16.92;ReadPosRankSum=1.662;SOR=0.343;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:579,0,805:3,14,4,11
chr1	94667430	.	G	GA	304.72	PASS	AC=1;AF=0.965;AN=2;DP=881;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:95:95,0,268:6,5,1,4
chr1	94668046	.	C	T	3666.02	PASS	AC=1;AF=0.966;AN=2;DP=5264;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:67,59:126:99:1378,0,1937:26,41,29,30
chr1	94670784	.	T	C	810.22	PASS	AC=1;AF=0.538;AN=2;DP=1100;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant16-variant18-variant19-variant20-variant22-variant23-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:584,0,487:8,13,7,16
chr1	94674723	.	G	A	1529.26	PASS	AC=2;AF=0.989;AN=2;DP=2119;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2218,225,0:0,0,45,30
chr1	94883999	.	G	T	1435.45	PASS	AC=1;AF=0.5;AN=2;DP=137;FS=2.161;FractionInformativeReads=1;MQ=60;MQRankSum=-0.088;QD=10.48;ReadPosRankSum=1.238;SOR=0.52;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,67:137:99:1464,0,1693:41,29,36,31
chr1	94980671	.	C	G	3614.65	PASS	AC=2;AF=1;AN=2;DP=4755;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3282,332,0:0,0,55,56
chr1	94982785	.	A	T	786.39	PASS	AC=1;AF=0.6;AN=2;DP=580;MQ=60;set=variant-variant4-variant7-variant15-variant19-variant22-variant23-variant27-variant30-variant32-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:616,0,1515:14,10,7,11
chr1	94982810	.	A	G	787.83	PASS	AC=1;AF=0.5;AN=2;DP=246;MQ=60;set=variant-variant22-variant27-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,19:54:99:625,0,1852:21,14,10,9
chr1	94983203	.	C	T	3313.7	PASS	AC=2;AF=0.611;AN=2;DP=3626;MQ=60;set=variant-variant4-variant7-variant10-variant15-variant19-variant22-variant23-variant27-variant30-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:6411,641,0:0,0,97,118
chr1	94984052	.	TAA	TA,TAAA,T	789.96	PASS	AC=1,0,0;AF=0.489,0.023,0.068;AN=2;DP=5960;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:115:99:30,45,16,24
chr1	94995411	.	C	A	1207.81	PASS	AC=1;AF=0.575;AN=2;DP=1546;set=variant-variant4-variant7-variant15-variant18-variant19-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,33:73:99:1020,0,1301:9,31,5,28
chr1	94995778	.	G	A	5654.09	PASS	AC=1;AF=0.5;AN=2;DP=496;FS=0.518;FractionInformativeReads=1;MQ=60;MQRankSum=2.746;QD=11.4;ReadPosRankSum=0.303;SOR=0.74;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:245,251:496:99:5682,0,5841:128,117,134,117
chr1	94995819	.	C	T	6410.1	PASS	AC=1;AF=0.579;AN=2;DP=8911;MQ=60;set=variant-variant4-variant7-variant15-variant18-variant19-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:218,232:450:99:5647,0,5425:96,122,109,123
chr1	94996170	.	TCTAGTCAA	T	1089.04	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=2.535;FractionInformativeReads=0.948;MQ=60;MQRankSum=1.104;QD=18.78;ReadPosRankSum=1.29;SOR=0.399;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,29:55:99:1126,0,2299:6,20,9,20
chr1	95001600	.	A	C	4122.38	PASS	AC=2;AF=1;AN=2;DP=4923;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3035,288,0:0,0,52,44
chr1	95005758	.	A	G	1105.07	PASS	AC=1;AF=0.5;AN=2;DP=234;FractionInformativeReads=1;MQ=60;set=variant-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:555,0,1171:28,10,15,12
chr1	95211285	.	C	T	43.51	PASS	AC=2;AF=0.581;AN=2;DP=536;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:707,60,0:0,0,13,7
chr1	95211525	.	G	A	732.89	PASS	AC=2;AF=0.8;AN=2;DP=3207;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2328,215,0:0,0,39,33
chr1	95286094	.	G	T	3039.37	PASS	AC=2;AF=1;AN=2;DP=4872;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2715,292,0:0,0,50,48
chr1	95286157	.	G	T	799.67	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=1.8;FractionInformativeReads=1;MQ=60;MQRankSum=1.659;QD=9.63;ReadPosRankSum=-0.279;SOR=0.881;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,38:83:99:828,0,1146:22,23,21,17
chr1	95286658	.	C	A	2370.54	PASS	AC=2;AF=0.811;AN=2;DP=3063;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2096,207,0:0,0,35,34
chr1	95286675	.	GTCCCAAATGTAAA	G	3070.16	PASS	AC=2;AF=0.811;AN=2;DP=2936;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2748,185,0:0,0,30,31
chr1	95290003	.	C	T	1831.44	PASS	AC=2;AF=0.811;AN=2;DP=2044;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1845,168,0:0,0,36,20
chr1	95290305	.	T	C	693.43	PASS	AC=2;AF=1;AN=2;DP=956;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.657;ReadPosRankSum=0.538;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:466,36,0:0,0,4,8
chr1	95291366	.	A	G	3052.93	PASS	AC=2;AF=0.989;AN=2;DP=3859;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2920,279,0:0,0,46,47
chr1	95291479	.	A	C	1351.66	PASS	AC=1;AF=0.5;AN=2;DP=1867;MQ=60;set=variant3-variant4-variant8-variant11-variant12-variant15-variant16-variant17-variant20-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,44:86:99:1081,0,1006:19,23,18,26
chr1	95294089	.	T	C	2076.06	PASS	AC=1;AF=0.5;AN=2;DP=2756;MQ=60;set=variant3-variant4-variant8-variant11-variant12-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,84:135:99:2157,0,1258:24,27,37,47
chr1	95305440	.	A	G	5763.57	PASS	AC=1;AF=0.682;AN=2;DP=5155;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,98:180:99:2458,0,1901:45,37,56,42
chr1	95307455	.	G	A	452	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:669,0,429:12,2,17,1
chr1	95333068	.	G	T	1286.98	PASS	AC=1;AF=0.732;AN=2;DP=1850;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,21:54:99:566,0,701:14,19,7,14
chr1	95360825	.	A	AT	2117.54	PASS	AC=2;AF=0.989;AN=2;DP=4137;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1546,178,0:0,0,14,46
chr1	95362927	.	TAAAAA	T,TA,TAAAAAA,TAAA,TAAAA,TAA	3416.45	PASS	AC=0,0,1,0,0,0;AF=0.209,0.302,0.07,0.174,0.035,0.023;AN=2;DP=5420;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:45:80:10,5,20,10
chr1	95367108	.	ACC	A,AC	353.37	PASS	AC=0,2;AF=0.598,0.232;AN=2;DP=439;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	2/2:13:39:0,0,12,1
chr1	95367136	.	G	A	794.03	PASS	AC=2;AF=1;AN=2;DP=930;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:778,75,0:0,0,17,8
chr1	95367894	.	A	C	1601.44	PASS	AC=2;AF=0.893;AN=2;DP=1635;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1024,99,0:0,0,14,19
chr1	95368574	.	TA	TAA,TAAA,T	151.39	PASS	AC=0,2,0;AF=0.182,0.409,0.023;AN=2;DP=910;MQ=60;set=variant2-variant4-variant13-variant14-filterInvariant16-variant18-variant19-filterInvariant20-variant23-filterInvariant25-variant26-variant28-variant32-variant33-variant34-filterInvariant36-variant37-variant38-variant39-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	2/2:17:57:0,0,11,6
chr1	95369211	.	T	G	2421.36	PASS	AC=2;AF=0.93;AN=2;DP=3343;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2812,258,0:0,0,33,53
chr1	95392588	.	C	T	1362.54	PASS	AC=1;AF=0.577;AN=2;DP=955;MQ=60;set=variant4-variant13-variant14-variant19-variant23-variant26-variant33-variant34-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:536,0,807:8,20,7,15
chr1	95427041	.	ATT	AT,A	82.87	PASS	AC=0,2;AF=0.5,0.225;AN=2;DP=908;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:24:72:0,0,7,17
chr1	95428455	.	CT	C,CTT	130.61	PASS	AC=0,1;AF=0.044,0.471;AN=2;DP=2041;set=filterInvariant-filterInvariant2-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant13-variant14-filterInvariant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:49:99:17,12,14,6
chr1	95449033	.	T	C	507.59	PASS	AC=1;AF=0.557;AN=2;DP=1195;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,24:34:99:661,0,236:3,7,11,13
chr1	95538617	.	C	G	366.57	PASS	AC=1;AF=0.5;AN=2;DP=131;FractionInformativeReads=1;MQ=60;set=variant4-variant18-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:548,0,418:3,11,4,14
chr1	95583090	.	G	C	968.05	PASS	AC=2;AF=1;AN=2;DP=1897;FS=0;MQ=60;MQRankSum=-0.657;ReadPosRankSum=1.614;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1063,99,0:0,0,16,17
chr1	95583394	.	A	C	152.99	PASS	AC=2;AF=1;AN=2;DP=488;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:545,45,0:0,0,11,4
chr1	95657854	.	CA	CAA,C	39.9	PASS	AC=1,0;AF=0.476,0.048;AN=2;DP=528;set=variant-variant2-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant13-variant14-variant19-variant20-variant21-variant25-variant26-variant29-variant31-variant32-variant34-variant38-variant41	GT:DP:GQ:SB	0/1:13:99:6,2,3,2
chr1	95658345	.	AT	A	3474.27	PASS	AC=2;AF=1;AN=2;DP=6724;MQ=60;MQRankSum=-1.635;ReadPosRankSum=2.418;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3940,373,0:0,0,47,77
chr1	95658446	.	A	C	2170.21	PASS	AC=1;AF=0.5;AN=2;DP=163;FS=5.911;FractionInformativeReads=1;MQ=60;MQRankSum=0.496;QD=13.31;ReadPosRankSum=0.748;SOR=0.383;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:82,81:163:99:2198,0,2228:56,26,48,33
chr1	95658500	.	C	T	4133.04	PASS	AC=1;AF=0.55;AN=2;DP=6069;MQ=60;set=variant5-variant8-variant11-variant12-variant15-variant16-variant19-variant23-variant27-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:143,131:274:99:3337,0,3722:90,53,78,53
chr1	95658770	.	T	C	3052.01	PASS	AC=1;AF=0.604;AN=2;DP=5921;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant11-variant12-variant15-variant16-variant19-variant22-variant23-variant27-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,119:230:99:3386,0,2868:42,69,37,82
chr1	95660024	.	AC	A	1798.99	PASS	AC=1;AF=0.55;AN=2;DP=1861;MQ=60;set=variant5-variant8-variant11-variant12-variant15-variant16-variant19-variant23-variant27-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,31:97:99:961,0,2335:26,40,8,23
chr1	95696709	.	T	G	361.15	PASS	AC=1;AF=0.5;AN=2;DP=56;FractionInformativeReads=1;MQ=60;set=variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:433,0,263:0,7,1,11
chr1	95699594	.	A	G	106.77	PASS	AC=1;AF=0.898;AN=2;DP=894;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:413,0,613:5,5,6,6
chr1	95699604	.	G	C	106.77	PASS	AC=1;AF=0.909;AN=2;DP=974;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:348,0,622:5,5,4,5
chr1	95705615	.	G	A	1390.44	PASS	AC=2;AF=0.943;AN=2;DP=1679;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:885,78,0:0,0,7,19
chr1	95709821	.	T	C	5035.81	PASS	AC=2;AF=1;AN=2;DP=6731;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3705,363,0:0,0,57,64
chr1	95709939	.	T	G	4372.54	PASS	AC=1;AF=0.909;AN=2;DP=5318;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,44:80:99:1332,0,1077:17,19,20,24
chr1	95710329	.	A	G	1949.3	PASS	AC=1;AF=0.571;AN=2;DP=2388;set=variant6-variant10-variant13-variant14-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:90,67:157:99:1782,0,2399:34,56,29,38
chr1	95710381	.	T	C	1814.53	PASS	AC=1;AF=0.571;AN=2;DP=1974;MQ=60;set=variant6-variant10-variant13-variant14-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,53:130:99:1436,0,2278:34,43,26,27
chr1	95712458	.	C	A	3344.31	PASS	AC=1;AF=0.5;AN=2;DP=708;FractionInformativeReads=1;MQ=60;set=variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,101:221:99:2302,0,3111:60,60,54,47
chr1	95712797	.	G	A	514.8	PASS	AC=1;AF=0.898;AN=2;DP=740;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:403,0,305:0,8,0,11
chr1	96457465	.	C	T	192.31	PASS	AC=1;AF=0.81;AN=2;DP=570;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:141,0,266:7,2,4,2
chr1	96488174	.	A	G	2329.88	PASS	AC=1;AF=0.594;AN=2;DP=6387;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,90:168:99:2265,0,1782:44,34,51,39
chr1	96488261	.	A	T	8830.38	PASS	AC=1;AF=0.943;AN=2;DP=10501;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:83,120:203:99:3214,0,2094:43,40,65,55
chr1	96488283	.	T	C	8993.11	PASS	AC=2;AF=1;AN=2;DP=11077;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,219:219:99:7071,656,0:0,0,121,98
chr1	96488492	.	T	C	466.05	PASS	AC=1;AF=0.606;AN=2;DP=1224;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:809,0,661:6,17,6,22
chr1	97187477	.	C	T	2417.27	PASS	AC=1;AF=0.5;AN=2;DP=197;FS=1.826;FractionInformativeReads=0.995;MQ=60;MQRankSum=-0.161;QD=12.27;ReadPosRankSum=1.876;SOR=0.561;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:97,99:196:99:2446,0,2416:33,64,37,62
chr1	97189091	.	G	A	1821.83	PASS	AC=2;AF=0.765;AN=2;DP=4769;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3401,339,0:0,0,54,59
chr1	97215360	.	G	A	789.85	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0.983;FractionInformativeReads=1;MQ=60;MQRankSum=-0.045;QD=11.97;ReadPosRankSum=0.25;SOR=0.54;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,34:66:99:818,0,867:10,22,12,22
chr1	97216839	.	G	A	715.55	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=2.597;FractionInformativeReads=1;MQ=60;MQRankSum=-1.61;QD=15.9;ReadPosRankSum=0.243;SOR=0.781;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:744,0,432:10,8,12,15
chr1	97236130	.	G	A	84.41	PASS	AC=2;AF=0.848;AN=2;DP=136;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant31-variant32-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:162,12,0:0,0,4,0
chr1	97243100	.	A	G	1208.15	PASS	AC=1;AF=0.5;AN=2;DP=81;FS=6.561;FractionInformativeReads=1;MQ=60;MQRankSum=1.521;QD=14.92;ReadPosRankSum=-0.617;SOR=0.233;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,50:81:99:1236,0,943:24,7,31,19
chr1	97272456	.	A	G	811.45	PASS	AC=1;AF=0.611;AN=2;DP=1504;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant16-variant18-variant22-variant26-variant31-variant32-variant34-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,37:61:99:975,0,540:11,13,19,18
chr1	97278804	.	G	A	358.52	PASS	AC=2;AF=0.765;AN=2;DP=1189;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1388,117,0:0,0,23,16
chr1	97279217	.	CTTTTTTTTTTT	CTTTTTTTTTT,CTTTTTT,C,CTTTTTTTTTTTT,CTTTTT,CTTTTTTTTTTTTTTTTTTTTT,CTTTT,CTTTTTTTTTTTTT,CTTTTTTTTT	163.08	PASS	AC=0,0,0,0,0,0,0,0,1;AF=0.063,0.3,0.013,0.075,0.05,0.013,0.013,0.013,0.013;AN=2;DP=7235;set=filterInvariant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-filterInvariant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/9:100:99:38,15,22,25
chr1	97279692	.	C	T	7170.28	PASS	AC=2;AF=0.765;AN=2;DP=19316;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,505:505:99:16004,1514,0:0,0,253,252
chr1	97547831	.	G	A	2073.89	PASS	AC=2;AF=1;AN=2;DP=1848;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.034;ReadPosRankSum=-1.152;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1618,129,0:0,0,34,9
chr1	97838972	.	A	G	748.15	PASS	AC=1;AF=0.5;AN=2;DP=307;MQ=60;set=variant6-variant12-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,35:78:99:908,0,1113:27,16,22,13
chr1	97839016	.	A	G	1326.42	PASS	AC=1;AF=0.571;AN=2;DP=1925;MQ=60;set=variant3-variant5-variant6-variant8-variant12-variant13-variant16-variant18-variant22-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,47:100:99:1304,0,1193:29,24,28,19
chr1	97847874	.	T	C	177.14	PASS	AC=1;AF=0.6;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant12-variant13-variant16-variant18-variant22-variant28-variant29-variant31-variant32-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:146,0,219:6,2,4,1
chr1	97981242	.	T	C	106.77	PASS	AC=1;AF=0.74;AN=2;DP=150;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant15-variant16-variant17-variant21-variant22-variant27-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:76:112,0,76:2,0,3,0
chr1	97981587	.	C	T	270.56	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=2.218;FractionInformativeReads=0.944;MQ=60;MQRankSum=-0.053;QD=15.03;ReadPosRankSum=0.053;SOR=0.25;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,12:17:99:299,0,131:1,4,5,7
chr1	97981622	.	G	GA	203.05	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.589;QD=18.46;ReadPosRankSum=-0.589;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,9:11:28:240,0,28:0,2,1,8
chr1	98185527	.	A	G	9765.81	PASS	AC=2;AF=1;AN=2;DP=13996;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,260:260:99:7659,779,0:0,0,126,134
chr1	98186077	.	T	C	11197.5	PASS	AC=2;AF=1;AN=2;DP=14686;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,310:310:99:9827,928,0:0,0,171,139
chr1	98348885	.	G	A	2346.7	PASS	AC=1;AF=0.875;AN=2;DP=3429;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:545,0,863:19,19,13,14
chr1	98349390	.	C	CA,CAA	458.52	PASS	AC=1,1;AF=0.864,0.045;AN=2;DP=1432;MQ=60;set=Intersection	GT:DP:GQ:SB	1/2:36:99:0,0,15,21
chr1	98511778	.	A	ACCG	123.92	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=0.966;MQ=59.95;MQRankSum=-1.487;QD=2.14;ReadPosRankSum=-3.583;SOR=0.782;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,10:56:99:161,0,8118:20,26,4,6
chr1	98511784	.	G	GCTGCTA	71.64	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=55;FS=1.409;FractionInformativeReads=0.982;MQ=59.95;MQRankSum=-1.369;QD=1.3;ReadPosRankSum=-3.412;SOR=0.986;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:45,9:54:99:109,0,8321:19,26,3,6
chr1	99127205	.	A	G	247.45	PASS	AC=2;AF=0.942;AN=2;DP=910;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:597,57,0:0,0,8,11
chr1	99127392	.	T	C	2891.74	PASS	AC=2;AF=1;AN=2;DP=4498;FS=0;FractionInformativeReads=1;MQRankSum=1.447;ReadPosRankSum=0.688;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2038,204,0:0,0,43,25
chr1	99150635	.	G	A	2324.93	PASS	AC=2;AF=0.93;AN=2;DP=3443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1996,192,0:0,0,28,36
chr1	99164434	.	G	A	1398.86	PASS	AC=1;AF=0.575;AN=2;DP=1690;MQ=60;set=variant-variant4-variant8-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,40:92:99:962,0,1293:31,21,20,20
chr1	99225627	.	G	A	3372.65	PASS	AC=2;AF=0.989;AN=2;DP=4857;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2931,268,0:0,0,52,38
chr1	99226071	.	T	A	1162.4	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=2.697;FractionInformativeReads=1;MQ=60;MQRankSum=-1.82;QD=12.24;ReadPosRankSum=1.582;SOR=1.015;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,48:95:99:1191,0,1156:22,25,19,29
chr1	99358358	.	G	T	968.14	PASS	AC=2;AF=0.7;AN=2;DP=4593;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3057,291,0:0,0,49,48
chr1	99387628	.	T	TA	1588.11	PASS	AC=2;AF=0.811;AN=2;DP=2635;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1364,141,0:0,0,17,30
chr1	99418911	.	TTGTGTGTGTGTG	T,TTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTG,TTGTGTGTGTG,TTGTGTGTG,TTGTGTGTGTGTGTGTGTG	1198.19	PASS	AC=0,0,0,0,0,1,0;AF=0.214,0.161,0.089,0.071,0.018,0.125,0.036;AN=2;DP=1202;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant14-variant16-variant17-variant18-variant20-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/6:18:99:1,10,0,7
chr1	99764303	.	T	C	1074.6	PASS	AC=2;AF=0.721;AN=2;DP=1491;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1478,131,0:0,0,32,12
chr1	99764404	.	T	C	1348.35	PASS	AC=2;AF=0.563;AN=2;DP=935;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant21-variant22-variant32-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3191,305,0:0,0,54,48
chr1	100111956	.	A	G	1082.62	PASS	AC=1;AF=0.545;AN=2;DP=1628;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant13-variant15-variant16-variant17-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,32:75:99:726,0,1094:15,28,14,18
chr1	100133438	.	CT	C	52.55	PASS	AC=1;AF=0.614;AN=2;DP=348;MQ=60;set=variant-variant2-variant9-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:68:174,0,68:0,4,2,6
chr1	100152443	.	T	C	1131.61	PASS	AC=1;AF=0.656;AN=2;DP=2544;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,40:78:99:1065,0,949:17,21,20,20
chr1	100160177	.	A	T	1646.34	PASS	AC=1;AF=0.676;AN=2;DP=5307;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,67:158:99:1822,0,2482:30,61,19,48
chr1	100174322	.	T	C	1622.44	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=0.725;FractionInformativeReads=1;MQ=60;MQRankSum=-1.22;QD=12.02;ReadPosRankSum=-0.937;SOR=0.771;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:75,60:135:99:1651,0,2055:55,20,45,15
chr1	100182884	.	C	T	2070.9	PASS	AC=1;AF=0.559;AN=2;DP=712;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant27-variant28-variant29-variant34-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:616,0,750:18,7,17,5
chr1	100185282	.	G	T	555.98	PASS	AC=1;AF=0.567;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant11-variant15-variant17-variant19-variant27-variant28-variant29-variant34-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:152,0,113:0,3,1,4
chr1	100194126	.	G	T	1735.89	PASS	AC=1;AF=0.5;AN=2;DP=131;FS=1.402;FractionInformativeReads=1;MQ=60;MQRankSum=0.145;QD=13.25;ReadPosRankSum=-3.804;SOR=0.886;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,70:131:99:1764,0,1403:33,28,41,29
chr1	100194305	.	C	G	2592.48	PASS	AC=2;AF=0.614;AN=2;DP=1417;MQ=60;set=variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1796,177,0:0,0,18,41
chr1	100203501	.	C	T	554.21	PASS	AC=2;AF=0.6;AN=2;DP=323;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:569,39,0:0,0,13,0
chr1	100203571	.	A	G	1750.63	PASS	AC=2;AF=0.625;AN=2;DP=1009;FractionInformativeReads=1;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1429,138,0:0,0,28,18
chr1	100203597	.	G	A	2208.45	PASS	AC=2;AF=0.625;AN=2;DP=1366;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1879,186,0:0,0,35,27
chr1	100203648	.	C	T	3169.78	PASS	AC=2;AF=0.625;AN=2;DP=1887;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2913,282,0:0,0,49,45
chr1	100203693	.	G	A	3254.98	PASS	AC=2;AF=0.625;AN=2;DP=2009;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:2976,307,0:0,0,50,53
chr1	100212662	.	AAC	A	352.58	PASS	AC=2;AF=0.727;AN=2;DP=59;FS=0;MQ=60;set=variant7-variant10-variant13-variant15-variant17-variant19-variant29-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:133,9,0:0,0,3,0
chr1	100214391	.	T	A	5526.17	PASS	AC=2;AF=0.625;AN=2;DP=2602;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:4216,351,0:0,0,81,36
chr1	100214487	.	C	T	10967	PASS	AC=2;AF=0.625;AN=2;DP=7374;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant13-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,321:321:99:9076,961,0:0,0,168,153
chr1	100316363	.	AAAC	A	2829.7	PASS	AC=1;AF=0.5;AN=2;DP=171;FS=1.207;FractionInformativeReads=0.988;MQ=60;MQRankSum=-1.258;QD=16.55;ReadPosRankSum=-0.365;SOR=0.809;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:94,75:169:99:2867,0,4526:50,44,42,33
chr1	100316589	.	A	G	2000.36	PASS	AC=1;AF=0.621;AN=2;DP=5003;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,77:171:99:1831,0,2454:46,48,35,42
chr1	100316765	.	C	T	1140.97	PASS	AC=2;AF=0.817;AN=2;DP=1867;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1995,177,0:0,0,16,43
chr1	100329889	.	G	C	3488.97	PASS	AC=1;AF=0.813;AN=2;DP=3360;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,48:73:99:1286,0,714:18,7,32,16
chr1	100335883	.	A	G	341.62	PASS	AC=1;AF=0.594;AN=2;DP=941;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:505,0,243:7,0,13,3
chr1	100336361	.	C	T	1972.52	PASS	AC=2;AF=0.817;AN=2;DP=2489;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1356,141,0:0,0,30,17
chr1	100340225	.	G	A	1813.63	PASS	AC=2;AF=0.817;AN=2;DP=2967;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1857,183,0:0,0,35,26
chr1	100342227	.	C	T	732.03	PASS	AC=1;AF=0.657;AN=2;DP=1651;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,16:44:99:351,0,714:9,19,6,10
chr1	100343153	.	A	G	818.06	PASS	AC=1;AF=0.586;AN=2;DP=1456;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant11-variant12-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:605,0,623:17,5,15,7
chr1	100345409	.	C	G	238.16	PASS	AC=1;AF=0.657;AN=2;DP=863;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:427,0,373:10,3,8,6
chr1	100346741	.	T	C	1368.33	PASS	AC=1;AF=0.657;AN=2;DP=2854;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:867,0,961:17,19,16,15
chr1	100350383	.	G	A	431.14	PASS	AC=1;AF=0.662;AN=2;DP=548;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:351,0,273:2,6,0,9
chr1	100353675	.	G	A	5773.43	PASS	AC=1;AF=0.775;AN=2;DP=7653;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,85:181:99:1967,0,2362:43,53,39,46
chr1	100357141	.	T	A	637.43	PASS	AC=1;AF=0.657;AN=2;DP=1194;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:553,0,605:13,9,14,6
chr1	100358200	.	G	A	1269.9	PASS	AC=1;AF=0.775;AN=2;DP=1259;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:492,0,432:1,11,0,13
chr1	100366446	.	GTT	G,GTTT,GTTTT,GT	1463.34	PASS	AC=1,0,0,0;AF=0.659,0.037,0.012,0.024;AN=2;DP=2606;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:41:99:8,12,4,17
chr1	100376448	.	G	A	433.99	PASS	AC=1;AF=0.606;AN=2;DP=1683;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,19:46:99:676,0,1465:8,19,6,13
chr1	100376456	.	T	A	421.46	PASS	AC=1;AF=0.606;AN=2;DP=1558;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:663,0,1393:6,18,5,12
chr1	100381109	.	A	AT,ATT	54.15	PASS	AC=1,0;AF=0.6,0.02;AN=2;DP=386;MQ=60;set=variant2-variant3-variant6-variant7-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant26-filterInvariant28-variant29-variant31-variant34-variant36-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:13:92:0,5,2,6
chr1	100381869	.	G	A	88.49	PASS	AC=1;AF=0.62;AN=2;DP=225;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant9-variant12-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:30:111,0,30:1,0,3,0
chr1	100387479	.	G	T	956.19	PASS	AC=1;AF=0.583;AN=2;DP=2052;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant11-variant12-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,21:69:99:431,0,1256:25,23,11,10
chr1	100387939	.	C	T	1870.73	PASS	AC=1;AF=0.731;AN=2;DP=2170;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:542,0,704:11,16,11,12
chr1	100388235	.	C	T	724.1	PASS	AC=1;AF=0.606;AN=2;DP=2055;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:729,0,975:15,16,10,15
chr1	100388503	.	A	C	3284.57	PASS	AC=1;AF=0.594;AN=2;DP=8111;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,130:239:99:3364,0,2751:71,38,75,55
chr1	100388748	.	T	C	6176.29	PASS	AC=1;AF=0.591;AN=2;DP=13377;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:174,193:367:99:4930,0,4551:89,85,101,92
chr1	100435079	.	T	C	1820.86	PASS	AC=1;AF=0.5;AN=2;DP=479;MQ=60;set=variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:122,81:203:99:2011,0,2802:50,72,32,49
chr1	100459021	.	C	T	446.55	PASS	AC=1;AF=0.5;AN=2;DP=48;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:250,0,389:10,2,7,5
chr1	100472604	.	A	G	713.22	PASS	AC=1;AF=0.5;AN=2;DP=479;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant16-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:862,0,915:22,17,23,16
chr1	100481062	.	AG	A	116.95	PASS	AC=1;AF=0.5;AN=2;DP=166;MQ=60;set=variant7-variant15-variant16-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:337,0,246:3,7,3,10
chr1	100483009	.	C	A	216.15	PASS	AC=1;AF=0.5;AN=2;DP=97;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant16-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:181,0,261:5,3,5,2
chr1	100488177	.	C	T	2649.56	PASS	AC=1;AF=0.563;AN=2;DP=1904;FractionInformativeReads=1;set=variant7-variant13-variant15-variant16-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:132,99:231:99:2575,0,3341:62,70,57,42
chr1	100489264	.	C	A	627.21	PASS	AC=1;AF=0.5;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:551,0,835:6,21,0,16
chr1	100491475	.	A	G	3912.29	PASS	AC=1;AF=0.5;AN=2;DP=620;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:166,155:321:99:3788,0,4247:83,83,73,82
chr1	100492468	.	G	A	413.17	PASS	AC=1;AF=0.5;AN=2;DP=103;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,33:51:99:918,0,404:8,10,10,23
chr1	100503564	.	T	C	453.31	PASS	AC=1;AF=0.5;AN=2;DP=174;MQ=60;set=variant7-variant15-variant16-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:325,0,310:8,6,9,2
chr1	100503993	.	A	C	779.85	PASS	AC=1;AF=0.5;AN=2;DP=294;MQ=60;set=variant7-variant15-variant16-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:627,0,530:6,16,4,17
chr1	100533960	.	G	A	791.68	PASS	AC=1;AF=0.607;AN=2;DP=842;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant11-variant12-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,24:38:99:635,0,312:9,5,16,8
chr1	100542638	.	G	A	204.9	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=0;FractionInformativeReads=1;MQ=60;set=variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:88:236,0,88:3,0,6,1
chr1	100542702	.	CT	C	99.43	PASS	AC=1;AF=0.5;AN=2;DP=576;MQ=60;set=variant-variant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-variant13-filterInvariant16-filterInvariant24-filterInvariant25-variant33-filterInvariant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,10:34:99:157,0,454:14,10,5,5
chr1	100543962	.	A	G	1105.8	PASS	AC=1;AF=0.5;AN=2;DP=444;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant16-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,32:89:99:791,0,1488:33,24,21,11
chr1	100547994	.	T	C	3443.38	PASS	AC=1;AF=0.607;AN=2;DP=6688;set=variant-variant2-variant3-variant6-variant9-variant11-variant12-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:133,95:228:99:2588,0,3580:64,69,46,49
chr1	100548780	.	A	T	760.05	PASS	AC=1;AF=0.5;AN=2;DP=157;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,32:86:99:708,0,1363:18,36,14,18
chr1	100549486	.	T	C	1259.38	PASS	AC=1;AF=0.5;AN=2;DP=268;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,80:140:99:1927,0,1356:34,26,41,39
chr1	100549698	.	TA	T,TAA	261.7	PASS	AC=0,1;AF=0.474,0.026;AN=2;DP=7053;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant29-filterInvariant31-filterInvariant33-variant34-filterInvariant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant44	GT:DP:GQ:SB	0/2:136:99:39,44,28,25
chr1	100572357	.	C	T	35.25	PASS	AC=1;AF=0.5;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.231;QD=7.05;ReadPosRankSum=-1.231;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:63:63,0,122:2,1,2,0
chr1	100572459	.	C	T	212.91	PASS	AC=1;AF=0.5;AN=2;DP=66;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:319,0,510:11,11,9,7
chr1	100575933	.	G	A	1699.44	PASS	AC=1;AF=0.603;AN=2;DP=4096;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant11-variant12-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,56:134:99:1163,0,1877:45,33,31,25
chr1	100584746	.	A	C	547.51	PASS	AC=1;AF=0.5;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:581,0,501:5,13,4,16
chr1	100587146	.	T	C	186.35	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant7-variant15-variant16-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:159,0,116:0,3,0,4
chr1	100588105	.	CTT	CT,CTTTT,CTTT,C	31.51	PASS	AC=0,0,1,0;AF=0.038,0.154,0.308,0.077;AN=2;DP=188;MQ=60;set=variant-variant7-variant10-variant14-variant20-variant27-variant28-variant29-filterInvariant31-variant37-variant38-variant41-variant44	GT:DP:GQ:SB	0/3:9:25:0,4,0,5
chr1	100598866	.	G	A	3559.77	PASS	AC=1;AF=0.919;AN=2;DP=5812;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,69:128:99:2689,0,3005:25,34,23,46
chr1	100598867	.	C	T	3559.77	PASS	AC=1;AF=0.919;AN=2;DP=5711;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,69:126:99:2689,0,3005:24,33,23,46
chr1	100602506	.	G	GT	399.46	PASS	AC=1;AF=0.5;AN=2;DP=76;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:543,0,343:11,5,14,9
chr1	100609639	.	C	T	877.13	PASS	AC=1;AF=0.5;AN=2;DP=123;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,29:59:99:731,0,818:18,12,16,13
chr1	100617887	.	C	T	758.58	PASS	AC=2;AF=0.955;AN=2;DP=1295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1136,114,0:0,0,24,14
chr1	100643910	.	G	A	1982.22	PASS	AC=2;AF=0.932;AN=2;DP=2542;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2126,153,0:0,0,2,49
chr1	100672060	.	T	C	3056.75	PASS	AC=2;AF=0.92;AN=2;DP=4885;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2529,266,0:0,0,44,45
chr1	100680593	.	C	CT	68.81	PASS	AC=2;AF=0.649;AN=2;DP=618;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,8:9:1:154,1,0:1,0,1,7
chr1	100681596	.	T	C	1109.2	PASS	AC=1;AF=0.5;AN=2;DP=193;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,45:111:99:1143,0,1752:36,30,26,19
chr1	100715454	.	G	A	168.68	PASS	AC=1;AF=0.872;AN=2;DP=2467;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:692,0,800:9,19,13,17
chr1	100731819	.	C	CA	1087.73	PASS	AC=2;AF=0.907;AN=2;DP=1701;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1665,111,0:0,0,22,13
chr1	100731820	.	G	A	1096.77	PASS	AC=2;AF=0.907;AN=2;DP=1724;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1665,111,0:0,0,24,13
chr1	100732450	.	T	C	1160.03	PASS	AC=2;AF=0.907;AN=2;DP=2046;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1507,135,0:0,0,17,28
chr1	100732526	.	C	G	554.22	PASS	AC=2;AF=0.907;AN=2;DP=989;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:682,66,0:0,0,7,15
chr1	100733207	.	G	GT,GTT	1677.46	PASS	AC=2,0;AF=0.761,0.193;AN=2;DP=3656;set=Intersection	GT:DP:GQ:SB	1/1:49:67:1,2,20,26
chr1	100733552	.	T	C	722.08	PASS	AC=2;AF=0.907;AN=2;DP=880;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:910,72,0:0,0,20,4
chr1	100742670	.	A	G	645.73	PASS	AC=2;AF=0.907;AN=2;DP=693;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:380,27,0:0,0,9,0
chr1	100750733	.	AGTTTT	A	4442.73	PASS	AC=2;AF=0.907;AN=2;DP=4370;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:4095,277,0:0,0,68,24
chr1	100756862	.	G	T	899.91	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.306;QD=12.86;ReadPosRankSum=-1.271;SOR=0.771;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,37:70:99:928,0,754:19,14,22,15
chr1	100758155	.	T	C	5671.07	PASS	AC=2;AF=0.907;AN=2;DP=6637;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4259,418,0:0,0,85,55
chr1	100817529	.	AGTGTGTGTGTGTGT	AGTGTGTGTGTGT,AGTGTGTGTGTGTGTGT,A,AGTGTGTGTGTGTGTGTGT,AGTGT,AGTGTGTGT,AGTGTGTGTGT	73.55	PASS	AC=1,0,1,0,0,0,0;AF=0.333,0.2,0.05,0.033,0.017,0.017,0.017;AN=2;DP=550;set=variant-variant3-variant4-variant5-filterInvariant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant25-filterInvariant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/1:19:99:0,0,5,14
chr1	100818178	.	G	C	845.2	PASS	AC=1;AF=0.6;AN=2;DP=2025;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant27-variant28-variant29-variant30-variant33-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,34:72:99:807,0,969:18,20,17,17
chr1	100818286	.	A	T	4050.45	PASS	AC=1;AF=0.932;AN=2;DP=4270;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,48:101:99:1169,0,1522:33,20,26,22
chr1	100818464	.	T	C	5085.1	PASS	AC=2;AF=0.989;AN=2;DP=7771;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5562,560,0:0,0,86,101
chr1	100889760	.	A	G	871.35	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=1.912;FractionInformativeReads=1;MQ=60;MQRankSum=1.069;QD=11.17;ReadPosRankSum=0.52;SOR=0.434;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:900,0,998:25,14,22,17
chr1	100908324	.	A	G	377.99	PASS	AC=2;AF=0.788;AN=2;DP=226;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:354,24,0:0,0,8,0
chr1	100908634	.	T	C	651.08	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.191;QD=11.04;ReadPosRankSum=-1.412;SOR=0.661;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:679,0,878:10,23,8,18
chr1	100949815	.	T	C	731.4	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=1.156;FractionInformativeReads=1;MQ=60;MQRankSum=1.824;QD=13.8;ReadPosRankSum=0.774;SOR=0.935;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,27:53:99:760,0,686:18,8,20,7
chr1	100961779	.	ATTT	AT,ATT,A	304.03	PASS	AC=2,0,0;AF=0.886,0.011,0.045;AN=2;DP=944;FS=0;set=Intersection	GT:DP:GQ:SB	1/1:16:18:1,0,3,12
chr1	100963418	.	T	G	269.73	PASS	AC=2;AF=0.976;AN=2;DP=635;FS=0;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:504,39,0:0,0,9,4
chr1	100963479	.	CAG	C	1208.82	PASS	AC=1;AF=0.6;AN=2;DP=799;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant17-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,17:26:99:687,0,327:5,4,11,6
chr1	100970346	.	T	C	1756.82	PASS	AC=1;AF=0.636;AN=2;DP=2616;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,40:71:99:1160,0,855:22,9,23,17
chr1	100970357	.	T	G	1014.53	PASS	AC=1;AF=0.5;AN=2;DP=266;FractionInformativeReads=1;MQ=60;set=variant10-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,34:77:99:929,0,1214:24,19,24,10
chr1	100984092	.	T	C	4008.71	PASS	AC=2;AF=0.942;AN=2;DP=4552;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2958,269,0:0,0,25,65
chr1	100984519	.	T	C	14096	PASS	AC=2;AF=0.942;AN=2;DP=16396;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,388:388:99:12549,1163,0:0,0,176,212
chr1	101003659	.	A	G	512.99	PASS	AC=2;AF=0.977;AN=2;DP=565;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:320,30,0:0,0,7,3
chr1	101003762	.	C	A	1359.3	PASS	AC=1;AF=0.682;AN=2;DP=1541;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:376,0,422:9,5,10,4
chr1	101004010	.	C	T	1481.58	PASS	AC=2;AF=1;AN=2;DP=3287;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2763,222,0:0,0,36,38
chr1	101004024	.	C	G	1069.78	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=1.898;FractionInformativeReads=1;MQ=60;MQRankSum=1.585;QD=14.26;ReadPosRankSum=-0.646;SOR=0.847;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,42:75:99:1098,0,693:17,16,19,23
chr1	101005090	.	G	A	4323.34	PASS	AC=1;AF=0.662;AN=2;DP=5122;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,77:143:99:1863,0,1663:35,31,43,34
chr1	101005855	.	T	C	3493.63	PASS	AC=1;AF=0.917;AN=2;DP=4555;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,48:99:99:1395,0,1349:34,17,36,12
chr1	101006577	.	A	G	16063.2	PASS	AC=1;AF=0.58;AN=2;DP=11294;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:211,213:424:99:5484,0,5547:95,116,98,115
chr1	101007055	.	C	T	6699.73	PASS	AC=1;AF=0.917;AN=2;DP=8432;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,89:176:99:2275,0,2214:38,49,41,48
chr1	101185296	.	C	G	634.31	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=0.962;FractionInformativeReads=1;MQ=60;MQRankSum=0.521;QD=9.91;ReadPosRankSum=-2.362;SOR=0.547;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:663,0,924:22,14,16,12
chr1	101189027	.	C	G	401.11	PASS	AC=2;AF=1;AN=2;DP=612;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:562,39,0:0,0,0,13
chr1	101190173	.	C	T	576.56	PASS	AC=1;AF=0.538;AN=2;DP=910;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant12-variant15-variant18-variant22-variant27-variant29-variant32-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,21:70:99:487,0,1335:30,19,12,9
chr1	101199979	.	A	G	190.31	PASS	AC=2;AF=0.977;AN=2;DP=289;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:264,18,0:0,0,6,0
chr1	101203827	.	G	A	4164.88	PASS	AC=1;AF=0.932;AN=2;DP=5866;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:67,57:124:99:1381,0,1730:33,34,28,29
chr1	101204167	.	A	G	554.29	PASS	AC=1;AF=0.5;AN=2;DP=147;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,39:71:99:1037,0,839:16,16,18,21
chr1	101204644	.	A	G	899.48	PASS	AC=1;AF=0.703;AN=2;DP=1240;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:446,0,595:1,15,2,11
chr1	101338324	.	T	C	9125.19	PASS	AC=1;AF=0.692;AN=2;DP=12770;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,169:330:99:4429,0,4317:91,70,94,75
chr1	101338482	.	A	G	13209.6	PASS	AC=1;AF=0.684;AN=2;DP=13819;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:174,146:320:99:3954,0,5169:87,87,67,79
chr1	101340134	.	C	T	406.78	PASS	AC=1;AF=0.617;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:189,0,240:0,7,0,5
chr1	101342497	.	T	C	510.99	PASS	AC=1;AF=0.632;AN=2;DP=713;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,17:24:99:467,0,199:1,6,5,12
chr1	101360684	.	G	C	1257.14	PASS	AC=1;AF=0.714;AN=2;DP=2437;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,38:81:99:834,0,1042:22,21,15,23
chr1	101372607	.	C	A	320.22	PASS	AC=2;AF=1;AN=2;DP=371;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:482,36,0:0,0,2,10
chr1	101438051	.	A	G	2492.25	PASS	AC=1;AF=0.5;AN=2;DP=1301;MQ=60;set=variant5-variant9-variant17-variant19-variant28-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:97,72:169:99:1681,0,2359:44,53,31,41
chr1	101444992	.	CAAAAAA	CAAAAA,CAAAA,C,CA,CAAAAAAA	452.53	PASS	AC=1,0,0,0,0;AF=0.238,0.107,0.012,0.167,0.036;AN=2;DP=8564;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-filterInvariant31-variant32-variant33-filterInvariant34-variant35-filterInvariant36-variant37-variant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:110:99:36,35,25,14
chr1	101702547	.	AG	A	1696.86	PASS	AC=1;AF=0.5;AN=2;DP=822;MQ=60;set=variant9-variant10-variant11-variant17-variant22-variant26-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,44:98:99:1484,0,1881:29,25,24,20
chr1	101704233	.	T	TA	164.78	PASS	AC=2;AF=0.9;AN=2;DP=78;FS=0;MQ=60;set=variant2-variant6-variant7-variant12-variant14-variant15-variant24-variant25-variant26-variant27-variant32-variant33-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:115,12,0:0,0,4,0
chr1	101704572	.	C	A	1547.9	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=3.247;FractionInformativeReads=1;MQ=60;MQRankSum=-1.024;QD=12.69;ReadPosRankSum=-1.398;SOR=0.983;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,61:122:99:1576,0,1529:32,29,36,25
chr1	101706406	.	C	A	2323.48	PASS	AC=1;AF=0.5;AN=2;DP=331;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:79,82:161:99:2178,0,2277:51,28,43,39
chr1	101706970	.	G	GT	323.55	PASS	AC=1;AF=0.5;AN=2;DP=124;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,18:60:99:366,0,1098:15,27,4,14
chr1	101707128	.	T	A	95.31	PASS	AC=2;AF=1;AN=2;DP=3;FS=0;FractionInformativeReads=1;MQ=60;QD=31.77;SOR=2.833;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:124,9,0:0,0,0,3
chr1	102271761	.	G	A	1959.12	PASS	AC=1;AF=0.5;AN=2;DP=166;FS=3.655;FractionInformativeReads=1;MQ=60;MQRankSum=-0.774;QD=11.8;ReadPosRankSum=-1.223;SOR=0.999;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:86,80:166:99:1987,0,2117:38,48,30,50
chr1	102271774	.	G	A	4761.87	PASS	AC=2;AF=0.617;AN=2;DP=4830;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4656,456,0:0,0,62,91
chr1	102278767	.	T	C	286.56	PASS	AC=1;AF=0.5;AN=2;DP=34;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:315,0,280:0,8,2,8
chr1	102462446	.	GTCAGT	G	3952.57	PASS	AC=1;AF=0.587;AN=2;DP=3916;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,65:122:99:2529,0,3570:23,34,31,34
chr1	103342392	.	T	C	725.19	PASS	AC=1;AF=0.536;AN=2;DP=1298;MQ=60;set=variant2-variant4-variant5-variant7-variant16-variant17-variant22-variant27-variant28-variant30-variant31-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,37:74:99:928,0,869:21,16,24,13
chr1	103343470	.	G	A	3188.24	PASS	AC=1;AF=0.571;AN=2;DP=639;MQ=60;set=variant6-variant12-variant18-variant20-variant23-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,58:112:99:1547,0,1372:29,25,33,25
chr1	103352451	.	A	G	1250.73	PASS	AC=1;AF=0.743;AN=2;DP=4226;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,47:115:99:1235,0,1612:31,37,25,22
chr1	103353991	.	T	A	315.84	PASS	AC=1;AF=0.571;AN=2;DP=88;FractionInformativeReads=1;MQ=60;set=variant6-variant12-variant18-variant20-variant23-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:238,0,151:4,1,6,1
chr1	103354138	.	A	G	1371.61	PASS	AC=2;AF=0.884;AN=2;DP=2337;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1405,137,0:0,0,22,24
chr1	103354428	.	A	G	1759.29	PASS	AC=2;AF=0.845;AN=2;DP=3598;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1977,188,0:0,0,36,27
chr1	103354939	.	CTG	CTGTGTGTGTGTG,CTGTGTGTGTGTGTGTG,CTGTG,CTGTGTGTGTG,C,CTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTG	1303.42	PASS	AC=1,0,0,0,0,0,0;AF=0.646,0.073,0.061,0.024,0.024,0.012,0.012;AN=2;DP=1457;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:45:99:19,7,13,6
chr1	103356072	.	CA	C	433.26	PASS	AC=1;AF=0.5;AN=2;DP=306;MQ=60;set=variant6-filterInvariant7-filterInvariant12-variant18-variant20-variant23-variant28-filterInvariant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,19:27:99:456,0,147:4,4,8,11
chr1	103364396	.	C	T	89.37	PASS	AC=1;AF=0.5;AN=2;DP=103;FractionInformativeReads=1;MQ=60;set=variant6-variant12-variant18-variant20-variant23-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:219,0,379:4,6,3,4
chr1	103364409	.	A	T	73.65	PASS	AC=1;AF=0.5;AN=2;DP=84;FractionInformativeReads=1;MQ=60;set=variant6-variant12-variant18-variant20-variant23-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:205,0,360:3,6,3,2
chr1	103364618	.	A	T	407.9	PASS	AC=1;AF=0.571;AN=2;DP=197;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant12-variant18-variant20-variant23-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:234,0,181:4,4,6,5
chr1	103379918	.	G	A	598.41	PASS	AC=1;AF=0.724;AN=2;DP=1565;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:318,0,520:10,11,4,9
chr1	103380379	.	TA	TAA,T,TAAA	131.63	PASS	AC=1,1,0;AF=0.817,0.037,0.012;AN=2;DP=965;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:24:99:0,0,10,14
chr1	103400491	.	G	A	859.25	PASS	AC=1;AF=0.907;AN=2;DP=1070;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:249,0,889:12,2,6,1
chr1	103400492	.	A	T	859.25	PASS	AC=1;AF=0.907;AN=2;DP=1090;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:99:249,0,889:13,2,6,1
chr1	103405793	.	G	A	766.86	PASS	AC=1;AF=0.538;AN=2;DP=507;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant14-variant16-variant17-variant20-variant23-variant27-variant30-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:409,0,400:11,7,10,7
chr1	103427381	.	A	G	1054.11	PASS	AC=1;AF=0.559;AN=2;DP=1724;MQ=60;set=variant-variant2-variant4-variant6-variant16-variant17-variant23-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,47:87:99:1229,0,849:23,17,27,20
chr1	103428389	.	G	A	885.57	PASS	AC=1;AF=0.932;AN=2;DP=1692;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:500,0,440:5,10,5,14
chr1	103444497	.	A	G	628.88	PASS	AC=1;AF=0.559;AN=2;DP=899;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant16-variant17-variant23-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,12:40:99:270,0,859:9,19,3,9
chr1	103445223	.	G	A	402.72	PASS	AC=1;AF=0.559;AN=2;DP=851;MQ=60;set=variant-variant2-variant4-variant6-variant16-variant17-variant23-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:381,0,505:11,9,3,11
chr1	103449598	.	G	C	520.72	PASS	AC=1;AF=0.932;AN=2;DP=675;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,196:5,1,3,0
chr1	103455217	.	C	T	626.36	PASS	AC=1;AF=0.886;AN=2;DP=1689;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,21:33:99:542,0,339:3,9,8,13
chr1	103461508	.	T	A	908.01	PASS	AC=1;AF=0.92;AN=2;DP=1651;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:467,0,343:8,6,12,7
chr1	103462473	.	A	G	58.54	PASS	AC=1;AF=0.932;AN=2;DP=183;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:76:120,0,76:2,0,3,0
chr1	103467596	.	A	G	326.29	PASS	AC=1;AF=0.5;AN=2;DP=238;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant16-variant17-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:328,0,265:2,7,4,8
chr1	103467615	.	C	T	508.82	PASS	AC=1;AF=0.92;AN=2;DP=837;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:231,0,276:1,7,3,5
chr1	103468609	.	A	G	1912.5	PASS	AC=1;AF=0.92;AN=2;DP=2534;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,25:40:99:616,0,456:11,4,15,10
chr1	103468767	.	A	T	696.28	PASS	AC=1;AF=0.5;AN=2;DP=509;MQ=60;set=variant-variant2-variant4-variant6-variant16-variant17-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,25:57:99:637,0,787:14,18,10,15
chr1	103471456	.	CCAT	C	837.72	PASS	AC=1;AF=0.86;AN=2;DP=3705;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:1227,0,1093:12,18,15,18
chr1	103487394	.	CT	C	434.22	PASS	AC=1;AF=0.932;AN=2;DP=1460;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:220,0,234:1,10,0,10
chr1	103496620	.	G	T	4430.2	PASS	AC=1;AF=0.932;AN=2;DP=7047;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:84,60:144:99:1449,0,2132:43,41,27,33
chr1	103540489	.	A	G	159.14	PASS	AC=1;AF=0.545;AN=2;DP=122;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant16-variant17-variant22-variant30-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:152,0,108:1,4,1,4
chr1	103544191	.	C	T	1074.65	PASS	AC=1;AF=0.5;AN=2;DP=895;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant16-variant17-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:67,34:101:99:766,0,1528:39,28,23,11
chr1	103544434	.	A	G	118.33	PASS	AC=1;AF=0.5;AN=2;DP=181;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant16-variant17-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:276,0,186:0,5,0,8
chr1	103573547	.	G	A	1875.83	PASS	AC=2;AF=0.966;AN=2;DP=3369;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2409,226,0:0,0,45,31
chr1	104076462	.	C	T	87.49	PASS	AC=2;AF=0.8;AN=2;DP=1583;MQ=60;set=filterInvariant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:908,99,0:0,0,15,18
chr1	104076495	.	A	G	66.73	PASS	AC=2;AF=0.8;AN=2;DP=1614;MQ=60;set=filterInvariant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:876,95,0:0,0,14,18
chr1	104076537	.	A	T	85.73	PASS	AC=2;AF=0.8;AN=2;DP=1244;MQ=60;set=filterInvariant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:540,48,0:0,0,4,12
chr1	104077271	.	GT	GTT,G	68.17	PASS	AC=0,1;AF=0.109,0.457;AN=2;DP=1042;set=filterInvariant-filterInvariant3-variant4-filterInvariant7-variant12-variant13-variant15-variant17-filterInvariant19-variant20-variant22-variant23-filterInvariant26-variant28-variant30-variant31-filterInvariant32-variant35-variant37-variant40-variant41-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:44:99:16,7,13,8
chr1	104080169	.	G	C	269.9	PASS	AC=2;AF=0.8;AN=2;DP=1810;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1268,123,0:0,0,18,23
chr1	104084226	.	A	G	698.02	PASS	AC=2;AF=0.8;AN=2;DP=1442;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1328,123,0:0,0,13,28
chr1	104086145	.	A	G	1442.86	PASS	AC=2;AF=1;AN=2;DP=2833;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,34:35:64:1036,64,0:1,0,9,25
chr1	104089773	.	C	G	241.62	PASS	AC=2;AF=0.818;AN=2;DP=476;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:559,45,0:0,0,2,13
chr1	104096692	.	T	C	257.84	PASS	AC=2;AF=0.8;AN=2;DP=895;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:915,81,0:0,0,9,18
chr1	104116312	.	A	G	812.48	PASS	AC=1;AF=0.607;AN=2;DP=1180;set=variant4-variant12-variant13-variant15-variant17-variant20-variant22-variant23-variant28-variant31-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:717,0,854:19,14,17,11
chr1	104117921	.	G	A	725.27	PASS	AC=1;AF=0.5;AN=2;DP=291;FractionInformativeReads=1;set=variant7-variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,45:82:99:1100,0,875:23,14,25,20
chr1	104166496	.	T	C	801.27	DRAGENHardSNP	AC=1;AF=0.543;AN=2;DP=4857;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:22,76:98:99:1872,0,322:13,9,58,18
chr1	104256478	.	T	A	148.54	PASS	AC=2;AF=0.921;AN=2;DP=232;FractionInformativeReads=1;set=variant4-variant6-filterInvariant11-variant13-variant16-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:248,18,0:0,0,6,0
chr1	107690843	.	C	T	1212.65	PASS	AC=1;AF=0.5;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant2-variant12-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,48:88:99:1343,0,1100:24,16,29,19
chr1	107946324	.	CA	C,CAA,CAAA	41.34	PASS	AC=1,0,0;AF=0.4,0.138,0.013;AN=2;DP=3092;set=filterInvariant2-variant3-variant4-variant5-variant6-filterInvariant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:54:99:13,6,23,12
chr1	107951101	.	A	G	5790.35	PASS	AC=2;AF=1;AN=2;DP=5821;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4527,415,0:0,0,77,62
chr1	107951247	.	A	AT	2502.27	PASS	AC=1;AF=0.556;AN=2;DP=6540;set=variant2-variant3-variant5-variant6-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,94:191:99:2130,0,2219:42,55,42,52
chr1	107951532	.	A	G	7895.03	PASS	AC=2;AF=0.989;AN=2;DP=9001;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:6442,582,0:0,0,105,89
chr1	107952605	.	T	G	1963.92	PASS	AC=2;AF=0.966;AN=2;DP=2518;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1862,161,0:0,0,31,23
chr1	107952914	.	G	A	8488.71	PASS	AC=2;AF=0.989;AN=2;DP=10125;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,249:249:99:7783,744,0:0,0,121,128
chr1	107979396	.	A	C	2480.5	PASS	AC=2;AF=1;AN=2;DP=3812;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2870,273,0:0,0,34,57
chr1	108023589	.	A	C	1413.39	PASS	AC=1;AF=0.5;AN=2;DP=1208;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant16-variant20-variant25-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:84,80:164:99:2003,0,2164:36,48,34,46
chr1	108024677	.	CAAAAAAAAAAAAA	C,CA,CAA,CAAA,CAAAAAA,CAAAAAAAA,CAAAAAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAAAAA,CAAAAA,CAAAA,CAAAAAAAAAAAAAA	1320.38	PASS	AC=0,0,0,1,0,0,0,0,0,0,0;AF=0.025,0.1,0.063,0.275,0.05,0.013,0.075,0.013,0.013,0.013,0.013;AN=2;DP=2097;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:36:99:4,4,20,8
chr1	108024868	.	C	T	4104.04	PASS	AC=1;AF=0.587;AN=2;DP=3456;set=variant2-variant4-variant5-variant6-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,84:142:99:2289,0,1538:25,33,34,50
chr1	108113702	.	A	G	366.53	PASS	AC=2;AF=0.909;AN=2;DP=673;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:406,30,0:0,0,5,5
chr1	108113856	.	G	A	1990.98	PASS	AC=2;AF=0.714;AN=2;DP=3551;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3940,268,0:0,0,47,39
chr1	108113865	.	G	A	2033.98	PASS	AC=2;AF=0.714;AN=2;DP=3671;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:4065,282,0:0,0,50,44
chr1	108115145	.	T	C	12389.6	PASS	AC=2;AF=0.919;AN=2;DP=13703;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,301:301:99:9364,902,0:0,0,176,125
chr1	108139003	.	C	T	554.5	PASS	AC=2;AF=0.66;AN=2;DP=941;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,29:30:44:971,44,0:0,1,7,22
chr1	108152231	.	G	T	214.92	PASS	AC=2;AF=0.708;AN=2;DP=241;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant12-variant14-variant16-variant17-variant19-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:352,24,0:0,0,8,0
chr1	108152332	.	T	A	742.77	PASS	AC=2;AF=0.68;AN=2;DP=1269;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1232,113,0:0,0,25,13
chr1	108160260	.	GA	G	1548.88	PASS	AC=2;AF=0.68;AN=2;DP=3051;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:2846,312,0:0,0,51,53
chr1	108292260	.	A	G	2358.08	PASS	AC=2;AF=0.722;AN=2;DP=2427;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2477,221,0:0,0,23,51
chr1	108299775	.	ATGTGTGTGTG	ATGTGTGTG,ATGTGTG,ATG,ATGTGTGTGTGTG,A	1047.28	PASS	AC=0,0,1,0,0;AF=0.6,0.125,0.025,0.013,0.013;AN=2;DP=1734;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/3:49:99:19,4,18,8
chr1	108299809	.	G	A,GTGTATA	2780.56	PASS	AC=2,0;AF=0.675,0.075;AN=2;DP=1341;set=variant16-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant3-variant8-variant32-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:72:99:0,0,49,23
chr1	108299974	.	T	C	2141.66	PASS	AC=1;AF=0.5;AN=2;DP=173;FS=1.199;FractionInformativeReads=1;MQ=60;MQRankSum=0.889;QD=12.38;ReadPosRankSum=0.196;SOR=0.837;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:82,91:173:99:2170,0,1895:37,45,38,53
chr1	108307642	.	C	T	495.3	PASS	AC=2;AF=0.863;AN=2;DP=678;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:280,27,0:0,0,6,3
chr1	108307727	.	T	A	1741.59	PASS	AC=1;AF=0.847;AN=2;DP=2390;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,17:53:99:382,0,851:20,16,13,4
chr1	108311160	.	T	C	302.68	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.441;QD=10.81;ReadPosRankSum=-0.673;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:331,0,467:5,11,3,9
chr1	108313258	.	C	T	2058.87	PASS	AC=2;AF=0.85;AN=2;DP=2708;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1449,158,0:0,0,27,26
chr1	108315256	.	G	C	190.38	PASS	AC=1;AF=0.643;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant24-variant26-variant30-variant31-variant32-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:187,0,256:7,3,6,1
chr1	108315305	.	C	T	1780.01	PASS	AC=2;AF=1;AN=2;DP=1875;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1354,132,0:0,0,29,15
chr1	108439569	.	A	C	129.19	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,119:3,1,2,0
chr1	108439902	.	T	G	557.29	PASS	AC=1;AF=0.5;AN=2;DP=128;FractionInformativeReads=1;MQ=60;set=variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:530,0,345:4,11,9,12
chr1	108440010	.	G	A	75.19	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:23:160,0,23:1,0,1,4
chr1	108507541	.	GGCCGCC	GGCC,G	437.99	PASS	AC=1,0;AF=0.775,0.038;AN=2;DP=2135;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:31:99:1,14,3,13
chr1	108507636	.	G	A	138.41	PASS	AC=1;AF=0.77;AN=2;DP=560;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:229,0,190:2,5,2,5
chr1	108676624	.	A	C	5597.89	PASS	AC=2;AF=1;AN=2;DP=6698;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:3903,402,0:0,0,81,53
chr1	108724383	.	C	T	230.61	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.288;QD=12.81;ReadPosRankSum=-1.821;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:259,0,389:9,1,7,1
chr1	108724518	.	A	G	3257.27	PASS	AC=2;AF=0.8;AN=2;DP=4053;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2632,267,0:0,0,45,44
chr1	108724693	.	G	A	372.92	PASS	AC=2;AF=0.808;AN=2;DP=608;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:539,42,0:0,0,2,12
chr1	108734993	.	G	C	346.05	PASS	AC=1;AF=0.684;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:357,0,350:10,0,10,1
chr1	108735212	.	T	C	2645.36	PASS	AC=1;AF=0.5;AN=2;DP=202;FS=3.968;FractionInformativeReads=1;MQ=60;MQRankSum=-1.698;QD=13.1;ReadPosRankSum=3.907;SOR=0.664;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:93,109:202:99:2674,0,2528:50,43,52,57
chr1	108741065	.	T	C	265.71	PASS	AC=1;AF=0.553;AN=2;DP=361;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:168,0,366:9,1,5,0
chr1	108742123	.	C	G	181.56	PASS	AC=1;AF=0.65;AN=2;DP=1015;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,20:30:99:749,0,553:5,5,11,9
chr1	108742135	.	A	G	674.22	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=3.105;QD=24.08;ReadPosRankSum=1.27;SOR=0.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,17:28:99:702,0,583:5,6,8,9
chr1	108742632	.	C	T	4124.07	PASS	AC=1;AF=0.5;AN=2;DP=968;MQ=60;set=variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:148,139:287:99:3279,0,3705:85,63,82,57
chr1	108742892	.	T	G	880.64	PASS	AC=1;AF=0.553;AN=2;DP=1138;MQ=60;set=variant5-variant6-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:644,0,814:10,20,12,12
chr1	108742904	.	CGCGCAGG	C	943.02	PASS	AC=1;AF=0.553;AN=2;DP=1086;MQ=60;set=variant5-variant6-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:854,0,1194:10,15,12,11
chr1	108742954	.	A	C	803.21	PASS	AC=1;AF=0.553;AN=2;DP=1019;MQ=60;set=variant5-variant6-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:577,0,697:14,17,14,11
chr1	108743042	.	C	A	1386.53	PASS	AC=1;AF=0.553;AN=2;DP=1427;MQ=60;set=variant5-variant6-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,23:65:99:817,0,1680:22,20,12,11
chr1	108743059	.	G	C	778.36	PASS	AC=1;AF=0.676;AN=2;DP=2841;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,26:69:99:907,0,1738:22,21,14,12
chr1	108743140	.	C	G	841.8	PASS	AC=1;AF=0.553;AN=2;DP=1577;MQ=60;set=variant5-variant6-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:652,0,616:14,13,16,12
chr1	108743178	.	C	G	778.83	PASS	AC=1;AF=0.553;AN=2;DP=1454;MQ=60;set=variant5-variant6-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,34:61:99:881,0,692:15,12,20,14
chr1	108743514	.	C	G	58.53	PASS	AC=1;AF=0.556;AN=2;DP=82;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant14-variant21-variant22-variant26-variant32-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:193,0,150:2,4,1,5
chr1	108766133	.	A	G	575.22	PASS	AC=2;AF=0.581;AN=2;DP=581;FractionInformativeReads=1;set=variant-variant2-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:609,54,0:0,0,16,2
chr1	108766424	.	A	G	2920.4	PASS	AC=2;AF=0.641;AN=2;DP=2390;set=variant-variant2-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,64:65:99:2195,162,0:1,0,20,44
chr1	108771524	.	C	T	306.55	PASS	AC=1;AF=0.531;AN=2;DP=841;FS=0;FractionInformativeReads=1;set=variant-variant2-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,9:37:99:223,0,1024:28,0,9,0
chr1	108993329	.	C	T	31.01	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=41;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:77:77,0,175:0,7,1,3
chr1	108994925	.	A	G	169.59	DRAGENHardSNP	AC=1;AF=0.84;AN=2;DP=606;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:50,12:62:99:111,0,1051:23,27,6,6
chr1	108994952	.	G	T	70.4	DRAGENHardSNP	AC=1;AF=0.796;AN=2;DP=601;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:37,19:56:99:308,0,764:17,20,9,10
chr1	109010261	.	G	A	855.33	PASS	AC=1;AF=0.5;AN=2;DP=339;FractionInformativeReads=1;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:148,46:194:99:644,0,3468:62,86,21,25
chr1	109013094	.	C	T	358.45	PASS	AC=1;AF=0.536;AN=2;DP=203;set=variant-variant5-variant6-variant7-variant10-variant13-variant14-variant21-variant22-variant27-variant30-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:217,0,177:5,0,6,0
chr1	109013340	.	C	T	918.63	PASS	AC=1;AF=0.536;AN=2;DP=982;set=variant-variant5-variant6-variant7-variant10-variant13-variant14-variant21-variant22-variant27-variant30-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,36:66:99:915,0,686:12,18,13,23
chr1	109013458	.	C	T	315.69	PASS	AC=2;AF=0.927;AN=2;DP=323;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:333,24,0:0,0,0,8
chr1	109103207	.	G	T	544.75	PASS	AC=1;AF=0.5;AN=2;DP=823;MQ=60;set=variant-variant5-variant7-variant12-variant13-variant17-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,39:64:99:1135,0,612:8,17,9,30
chr1	109170746	.	C	T	588.81	PASS	AC=2;AF=0.841;AN=2;DP=2148;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1501,123,0:0,0,33,8
chr1	109181309	.	C	CAT	16504.8	PASS	AC=2;AF=1;AN=2;DP=13849;FS=0;MQ=60;MQRankSum=2.088;ReadPosRankSum=1.156;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,309:309:99:13844,933,0:0,0,149,160
chr1	109181479	.	A	G	3392.95	PASS	AC=1;AF=0.5;AN=2;DP=559;FS=0;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:145,150:295:99:3642,0,3636:69,76,72,78
chr1	109197265	.	G	A	396.53	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,27:39:99:887,0,428:12,0,22,5
chr1	109240112	.	TA	T	756.02	PASS	AC=1;AF=0.615;AN=2;DP=2292;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant9-variant12-variant13-variant17-variant19-variant20-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:550,0,579:1,28,6,25
chr1	109240160	.	CTTTTTTTTTTTT	C	1539.87	PASS	AC=2;AF=0.989;AN=2;DP=1437;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:82:1208,82,0:0,0,2,25
chr1	109241128	.	T	C	43.71	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.72;QD=7.28;ReadPosRankSum=0;SOR=0.307;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,161:4,0,2,0
chr1	109255513	.	G	T	3254.12	PASS	AC=1;AF=0.932;AN=2;DP=3958;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,57:97:99:1408,0,968:21,19,34,23
chr1	109261850	.	G	A	88.71	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant22-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:306,0,224:2,6,3,7
chr1	109268441	.	G	A	1874.14	PASS	AC=1;AF=0.605;AN=2;DP=2713;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant14-variant19-variant20-variant26-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,59:128:99:1467,0,1729:27,42,33,26
chr1	109268573	.	T	C	3889.99	PASS	AC=2;AF=0.821;AN=2;DP=5010;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3652,338,0:0,0,53,60
chr1	109270402	.	G	A	2417.25	PASS	AC=2;AF=0.689;AN=2;DP=2601;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2620,225,0:0,0,53,22
chr1	109273456	.	A	G	3296.02	PASS	AC=2;AF=0.707;AN=2;DP=4093;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3039,270,0:0,0,34,56
chr1	109273610	.	G	A	637.41	PASS	AC=2;AF=0.695;AN=2;DP=916;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:849,63,0:0,0,3,18
chr1	109289236	.	C	A	693.35	PASS	AC=2;AF=0.818;AN=2;DP=1625;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:1152,95,0:0,0,26,6
chr1	109289353	.	C	G	3730.71	PASS	AC=2;AF=0.818;AN=2;DP=6147;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3674,366,0:0,0,64,58
chr1	109289487	.	C	T	3506.18	PASS	AC=2;AF=0.818;AN=2;DP=5136;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3553,348,0:0,0,54,62
chr1	109299453	.	C	G	902.1	PASS	AC=2;AF=0.826;AN=2;DP=1254;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:900,93,0:0,0,13,18
chr1	109301019	.	GC	G	150.1	PASS	AC=1;AF=0.864;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant15-variant19-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:13:238,0,13:1,0,7,0
chr1	109301250	.	G	C	1527.8	PASS	AC=2;AF=0.818;AN=2;DP=3048;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2046,213,0:0,0,33,38
chr1	109321824	.	G	T	2029.55	PASS	AC=2;AF=0.818;AN=2;DP=2133;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1449,132,0:0,0,31,13
chr1	109338861	.	G	C	1915.94	PASS	AC=2;AF=0.658;AN=2;DP=3089;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2076,212,0:0,0,41,30
chr1	109339414	.	GT	G,GTT	184.36	PASS	AC=0,1;AF=0.471,0.059;AN=2;DP=265;MQ=60;set=variant5-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant25-variant30-variant36-variant37-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:12:95:2,5,2,3
chr1	109350198	.	GT	G,GTT	216.77	PASS	AC=1,0;AF=0.382,0.118;AN=2;DP=2387;MQ=60;set=variant-variant2-filterInvariant3-filterInvariant4-filterInvariant8-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant15-variant16-filterInvariant17-variant18-filterInvariant20-variant21-variant23-variant24-filterInvariant25-filterInvariant26-variant27-variant28-variant29-variant31-filterInvariant32-filterInvariant34-filterInvariant37-filterInvariant38-filterInvariant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:44:99:9,20,1,14
chr1	109358755	.	A	AT	8409.33	PASS	AC=2;AF=0.645;AN=2;DP=9190;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,223:223:99:6766,670,0:0,0,106,117
chr1	109366370	.	C	T	2462.52	PASS	AC=1;AF=0.744;AN=2;DP=3898;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,43:91:99:1076,0,1878:18,30,15,28
chr1	109366371	.	G	A	1170.99	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=1.781;FractionInformativeReads=1;MQ=60;MQRankSum=0.021;QD=13.16;ReadPosRankSum=2.207;SOR=0.511;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,47:89:99:1199,0,1619:14,28,18,29
chr1	109369797	.	T	G	240.81	PASS	AC=1;AF=0.657;AN=2;DP=995;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:312,0,330:8,3,7,7
chr1	109369915	.	G	T	986.6	PASS	AC=1;AF=0.643;AN=2;DP=2167;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:478,0,567:10,13,8,11
chr1	109372876	.	G	A	205.04	PASS	AC=2;AF=0.803;AN=2;DP=637;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:433,36,0:0,0,10,2
chr1	109372968	.	T	G	591.42	PASS	AC=2;AF=0.795;AN=2;DP=1844;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1849,156,0:0,0,38,14
chr1	109377157	.	TA	T,TAA	1312.12	PASS	AC=2,0;AF=0.907,0.07;AN=2;DP=1988;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:46:99:0,0,27,19
chr1	109391486	.	G	A	2670.67	PASS	AC=2;AF=1;AN=2;DP=2802;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1350,123,0:0,0,24,17
chr1	109391662	.	G	C	2164.27	PASS	AC=1;AF=0.556;AN=2;DP=1033;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant8-variant9-variant13-variant33-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,63:129:99:1382,0,1492:27,39,26,37
chr1	109395105	.	C	T	1533.14	PASS	AC=2;AF=0.857;AN=2;DP=5950;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4263,378,0:0,0,71,55
chr1	109513497	.	C	T	13751.1	PASS	AC=2;AF=0.826;AN=2;DP=15643;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,354:356:99:10772,1016,0:1,1,197,157
chr1	109529322	.	T	TAA	1562.01	PASS	AC=2;AF=0.989;AN=2;DP=1314;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1483,105,0:0,0,11,23
chr1	109534940	.	G	A	1338.7	PASS	AC=2;AF=0.989;AN=2;DP=1645;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1212,120,0:0,0,23,17
chr1	109545046	.	C	T	492.87	PASS	AC=2;AF=0.989;AN=2;DP=675;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.424;ReadPosRankSum=-0.193;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:445,33,0:0,0,2,9
chr1	109606778	.	CAAAAAAAAAA	C,CAAAAAAAAAAAAAA,CAAAAAAAAAAAAA,CAAAAAAAAAAAAAAA,CAAAAAAAAAAAA,CAAAAAAAA,CAAAAAAAAA,CAAAAAAAAAAA	1106.46	PASS	AC=0,0,1,0,0,0,0,0;AF=0.1,0.086,0.129,0.071,0.171,0.014,0.014,0.071;AN=2;DP=719;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/3:14:93:6,0,7,1
chr1	109618257	.	C	T	1462.45	PASS	AC=2;AF=0.989;AN=2;DP=1828;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1327,130,0:0,0,33,11
chr1	109618308	.	G	A	2126.95	PASS	AC=2;AF=0.71;AN=2;DP=2113;MQ=60;set=variant2-variant4-variant6-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2244,193,0:0,0,46,19
chr1	109633256	.	C	G	3188.4	PASS	AC=1;AF=0.661;AN=2;DP=4495;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant26-variant27-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,54:119:99:1404,0,1726:45,20,35,19
chr1	109656038	.	AAGAGAGAGAGAGAGAGAGAGAGAG	AAGAGAGAGAGAGAGAGAG,AAGAGAGAGAGAGAGAGAGAGAGAGAG,AAGAGAGAGAGAGAGAGAGAGAG,A,AAGAG,AAGAGAGAGAGAG,AAGAGAGAGAGAGAGAGAGAGAGAGAGAG,AAGAGAGAGAGAGAGAG,AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG,AAGAGAGAGAGAGAGAGAGAG,AAGAGAG,AAGAGAGAGAGAGAG,AAGAGAGAGAG	128.24	PASS	AC=0,0,0,0,0,0,0,0,0,0,0,1,1;AF=0.159,0.023,0.091,0.023,0.068,0.068,0.023,0.159,0.023,0.023,0.023,0.023,0.023;AN=2;DP=526;set=variant-variant2-variant6-variant7-filterInvariant8-variant9-variant10-variant12-variant13-variant16-variant18-variant21-variant22-variant23-filterInvariant24-variant28-variant29-variant30-variant32-variant33-variant35-variant41	GT:DP:GQ:SB	13/12:19:99:1,2,15,1
chr1	109704390	.	C	G	2226.07	PASS	AC=2;AF=0.989;AN=2;DP=3139;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2905,228,0:0,0,67,9
chr1	109704618	.	A	G	5408.79	PASS	AC=2;AF=1;AN=2;DP=7181;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,171:171:99:5413,513,0:0,0,66,105
chr1	109714750	.	T	C	254.34	PASS	AC=1;AF=0.639;AN=2;DP=1217;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:486,0,306:3,10,4,12
chr1	109714919	.	A	G	73.25	PASS	AC=1;AF=0.643;AN=2;DP=399;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:195,0,185:4,1,4,1
chr1	109727475	.	T	C	323.3	PASS	AC=2;AF=0.953;AN=2;DP=567;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:32:355,32,0:0,0,7,4
chr1	109727653	.	CT	C	626.92	PASS	AC=1;AF=0.563;AN=2;DP=988;MQ=60;set=variant7-variant11-variant12-variant14-variant15-variant17-variant19-variant22-variant25-variant28-variant29-variant32-variant33-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:830,0,827:13,15,15,13
chr1	109727832	.	A	G	294.12	PASS	AC=1;AF=0.575;AN=2;DP=312;FractionInformativeReads=1;MQ=60;set=variant7-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant22-variant24-variant25-variant28-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:125,0,234:2,6,1,4
chr1	109732080	.	C	T	857.2	PASS	AC=1;AF=0.77;AN=2;DP=916;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:391,0,295:2,7,4,9
chr1	109732387	.	G	C	230.85	PASS	AC=1;AF=0.531;AN=2;DP=496;FractionInformativeReads=1;MQ=60;set=variant7-variant11-variant12-variant14-variant15-variant17-variant19-variant22-variant25-variant28-variant29-variant32-variant33-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:187,0,471:5,13,2,6
chr1	109734157	.	T	C	1830.47	PASS	AC=1;AF=0.77;AN=2;DP=1964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,35:67:99:935,0,837:13,19,12,23
chr1	109734225	.	G	T	1031.33	PASS	AC=1;AF=0.77;AN=2;DP=926;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:604,0,476:6,9,10,8
chr1	109734541	.	C	T	1434.12	PASS	AC=1;AF=0.814;AN=2;DP=2416;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,35:59:99:1103,0,646:7,17,7,28
chr1	109735298	.	T	C	5745	PASS	AC=1;AF=0.763;AN=2;DP=6918;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,85:183:99:2141,0,2650:52,46,43,42
chr1	109735416	.	A	C	4164.01	PASS	AC=1;AF=0.763;AN=2;DP=6004;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,79:163:99:2016,0,2287:29,55,33,46
chr1	109735504	.	T	C	1263.74	PASS	AC=1;AF=0.763;AN=2;DP=2248;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,40:70:99:1036,0,874:7,23,14,26
chr1	109737063	.	C	T	2169.67	PASS	AC=1;AF=0.763;AN=2;DP=2952;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,34:58:99:899,0,640:18,6,20,14
chr1	109737090	.	G	A	2999.2	PASS	AC=1;AF=0.763;AN=2;DP=4122;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,45:103:99:1063,0,1366:36,22,27,18
chr1	109737132	.	T	C	3718.04	PASS	AC=2;AF=0.769;AN=2;DP=5484;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4375,432,0:0,0,81,63
chr1	109737172	.	C	T	3670.25	PASS	AC=1;AF=0.763;AN=2;DP=5256;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,60:151:99:1320,0,2238:45,46,30,30
chr1	109737314	.	T	C	1235.95	PASS	AC=1;AF=0.763;AN=2;DP=1765;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:879,0,1224:6,16,7,16
chr1	109737320	.	G	A	1138.05	PASS	AC=1;AF=0.763;AN=2;DP=1628;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:888,0,1119:6,13,7,15
chr1	109741516	.	A	C	542.07	PASS	AC=2;AF=0.898;AN=2;DP=677;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:673,51,0:0,0,3,14
chr1	109741530	.	T	C	94.17	PASS	AC=1;AF=0.591;AN=2;DP=145;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant15-variant17-variant19-variant24-variant28-variant33-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:119,0,319:2,7,0,4
chr1	109742452	.	C	T	151.77	PASS	AC=1;AF=0.78;AN=2;DP=436;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:216,0,356:10,2,4,2
chr1	109742485	.	G	A	450.06	PASS	AC=1;AF=0.78;AN=2;DP=852;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,12:35:99:348,0,726:20,3,9,3
chr1	109743622	.	C	T	531.89	PASS	AC=1;AF=0.6;AN=2;DP=1420;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,19:50:99:539,0,1053:6,25,3,16
chr1	109745618	.	T	C	2059.21	PASS	AC=2;AF=0.898;AN=2;DP=2583;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:1988,195,0:0,0,27,38
chr1	109745674	.	G	A	284.5	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:384,0,514:6,13,5,11
chr1	109771063	.	T	C	4837.82	PASS	AC=1;AF=0.738;AN=2;DP=5683;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,65:126:99:1567,0,1550:28,33,28,37
chr1	109771881	.	G	T	755.12	PASS	AC=2;AF=1;AN=2;DP=715;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:614,42,0:0,0,14,0
chr1	109773705	.	ATT	A	44.82	PASS	AC=2;AF=0.929;AN=2;DP=38;FS=0;MQ=60;MQRankSum=-0.55;ReadPosRankSum=0.937;set=variant7-variant8-variant12-variant15-variant23-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:145,12,0:0,0,1,3
chr1	109778577	.	T	C	3158.67	PASS	AC=1;AF=0.738;AN=2;DP=3725;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,43:82:99:1086,0,958:22,17,27,16
chr1	109779556	.	T	A	3082.84	PASS	AC=2;AF=1;AN=2;DP=4031;FS=0;MQ=60;MQRankSum=-0.258;ReadPosRankSum=-0.258;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3196,308,0:0,0,52,51
chr1	109779621	.	T	TC	2449.43	PASS	AC=2;AF=0.779;AN=2;DP=2442;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2762,223,0:0,0,25,49
chr1	109780302	.	CT	C	1632.15	PASS	AC=1;AF=0.5;AN=2;DP=227;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,61:114:99:1835,0,1548:36,17,39,22
chr1	109792735	.	A	ACGC	901.58	PASS	AC=1;AF=0.738;AN=2;DP=4781;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,54:117:99:1985,0,2581:43,20,35,19
chr1	109794252	.	T	C	2720.95	PASS	AC=2;AF=0.955;AN=2;DP=9677;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,221:221:99:7527,663,0:0,0,103,118
chr1	109795026	.	T	C	3965.83	PASS	AC=2;AF=0.955;AN=2;DP=6691;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4871,465,0:0,0,79,76
chr1	109795608	.	T	C	5077.79	PASS	AC=2;AF=0.966;AN=2;DP=8514;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:6454,603,0:0,0,97,104
chr1	109796053	.	C	T	519.91	PASS	AC=1;AF=0.523;AN=2;DP=1550;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant11-variant13-variant14-variant18-variant21-variant23-variant25-variant26-variant28-variant30-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,38:74:99:958,0,935:14,22,13,25
chr1	109803613	.	C	G	1127.35	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=1.838;FractionInformativeReads=1;MQ=60;MQRankSum=0.637;QD=14.09;ReadPosRankSum=1.583;SOR=0.49;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,43:80:99:1156,0,935:22,15,23,20
chr1	109804646	.	G	A	130.23	PASS	AC=1;AF=0.625;AN=2;DP=624;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:418,0,329:1,9,2,11
chr1	109806442	.	C	A	2052.83	PASS	AC=1;AF=0.676;AN=2;DP=2611;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,40:78:99:1043,0,1102:9,29,11,29
chr1	109806834	.	C	T	3060.93	PASS	AC=1;AF=0.625;AN=2;DP=8327;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:139,143:282:99:3429,0,3328:72,67,75,68
chr1	109807099	.	G	A	1068.95	PASS	AC=1;AF=0.625;AN=2;DP=4159;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,64:141:99:1518,0,2109:41,36,26,38
chr1	109807709	.	G	A	231.97	PASS	AC=1;AF=0.5;AN=2;DP=117;FractionInformativeReads=1;MQ=60;set=variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:720,0,765:7,14,11,12
chr1	109811611	.	G	A	3273.83	PASS	AC=1;AF=0.5;AN=2;DP=243;FS=7.056;FractionInformativeReads=0.996;MQ=60;MQRankSum=-2.05;QD=13.47;ReadPosRankSum=-0.005;SOR=1.099;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:116,126:242:99:3302,0,2961:58,58,52,74
chr1	109811984	.	G	A	2188.09	PASS	AC=1;AF=0.5;AN=2;DP=576;FractionInformativeReads=1;MQ=60;set=variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:96,120:216:99:2773,0,2265:47,49,60,60
chr1	109813020	.	G	A	205.43	PASS	AC=2;AF=0.706;AN=2;DP=1426;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1550,135,0:0,0,31,14
chr1	109813236	.	TTCCCAGTCTTGGGG	T	905.95	PASS	AC=1;AF=0.697;AN=2;DP=3725;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,50:123:99:1861,0,4605:33,40,23,27
chr1	109814880	.	C	T	2182.55	PASS	AC=1;AF=0.536;AN=2;DP=3663;MQ=60;set=variant2-variant4-variant5-variant18-variant21-variant23-variant26-variant29-variant30-variant31-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:143,133:276:99:3232,0,3678:71,72,65,68
chr1	109816176	.	A	C	5403.31	PASS	AC=2;AF=1;AN=2;DP=8342;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,193:193:99:5953,579,0:0,0,69,124
chr1	109817245	.	C	T	3238.47	PASS	AC=1;AF=0.763;AN=2;DP=4905;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,64:132:99:1449,0,1788:32,36,29,35
chr1	109817838	.	T	C	616.36	PASS	AC=2;AF=0.845;AN=2;DP=1360;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1044,105,0:0,0,17,18
chr1	109818158	.	C	CT	5905	PASS	AC=1;AF=0.845;AN=2;DP=5974;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,84:149:99:2979,0,2135:34,31,42,42
chr1	109818222	.	CTTGAT	C	2424.56	PASS	AC=1;AF=0.5;AN=2;DP=490;set=variant8-variant13-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,68:126:99:2620,0,2181:22,36,24,44
chr1	109818263	.	G	A	3778.69	PASS	AC=2;AF=1;AN=2;DP=4873;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2800,260,0:0,0,30,57
chr1	109818306	.	G	T	2623.24	PASS	AC=1;AF=0.833;AN=2;DP=3009;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:689,0,722:7,18,7,18
chr1	109822143	.	G	A	1926.43	PASS	AC=1;AF=0.81;AN=2;DP=1494;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:603,0,825:23,2,17,6
chr1	109822166	.	G	A	2741.34	PASS	AC=1;AF=0.81;AN=2;DP=2639;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,31:70:99:877,0,1061:28,11,21,10
chr1	109823220	.	A	G	1291.88	PASS	AC=1;AF=0.5;AN=2;DP=498;FractionInformativeReads=1;MQ=60;set=variant18-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:89,59:148:99:1395,0,2394:33,56,23,36
chr1	109825360	.	C	T	942.79	PASS	AC=2;AF=1;AN=2;DP=1851;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1429,114,0:0,0,23,15
chr1	109835163	.	C	T	624.2	PASS	AC=1;AF=0.5;AN=2;DP=353;MQ=60;set=variant2-variant5-variant23-variant26-variant29-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:598,0,810:16,18,12,16
chr1	109836842	.	C	G	5697.38	PASS	AC=2;AF=0.722;AN=2;DP=5934;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,177:177:99:5241,531,0:0,0,78,99
chr1	109838116	.	C	T	273.85	PASS	AC=2;AF=1;AN=2;DP=603;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:614,51,0:0,0,3,14
chr1	109838833	.	T	C	660.75	PASS	AC=2;AF=1;AN=2;DP=1224;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:873,75,0:0,0,19,6
chr1	109838918	.	C	T	2531.13	PASS	AC=2;AF=0.943;AN=2;DP=4861;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:2941,304,0:0,0,60,42
chr1	109839063	.	AT	A,ATT	332.92	PASS	AC=1,0;AF=0.386,0.136;AN=2;DP=1044;set=variant2-variant4-variant5-filterInvariant7-variant10-variant11-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant19-variant23-variant25-variant26-variant27-variant29-variant30-filterInvariant35-variant36-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:23:99:2,11,1,9
chr1	109839392	.	A	G	975.91	PASS	AC=1;AF=0.864;AN=2;DP=2844;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:37,25:62:99:644,0,1436:22,15,14,11
chr1	109839400	.	C	T	840.14	PASS	AC=1;AF=0.5;AN=2;DP=644;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant23-variant26-variant29-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,40:71:99:1026,0,1094:18,13,24,16
chr1	109839433	.	A	G	1151.54	PASS	AC=2;AF=1;AN=2;DP=4179;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3099,282,0:0,0,54,40
chr1	109839954	.	G	C	247.98	PASS	AC=1;AF=0.907;AN=2;DP=1063;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,22:34:99:642,0,359:6,6,6,16
chr1	109853086	.	G	C	1575.58	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=2.864;FractionInformativeReads=1;MQ=60;MQRankSum=-1.303;QD=21.29;ReadPosRankSum=2.055;SOR=0.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,47:74:99:1604,0,854:3,24,9,38
chr1	109855135	.	TAA	TA,T,TAAA,TAAAA	2159.05	PASS	AC=1,1,0,0;AF=0.636,0.045,0.125,0.011;AN=2;DP=4447;set=Intersection	GT:DP:GQ:SB	2/1:82:99:4,6,33,39
chr1	109855404	.	G	A	9147.68	PASS	AC=2;AF=0.821;AN=2;DP=11589;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,267:267:99:8080,800,0:0,0,139,128
chr1	109855816	.	CCT	C	894.32	PASS	AC=1;AF=0.5;AN=2;DP=116;FractionInformativeReads=1;MQ=60;set=variant7-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:1229,0,1014:11,13,16,15
chr1	109856306	.	G	A	3944.01	PASS	AC=1;AF=0.697;AN=2;DP=3783;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,50:114:99:1170,0,1603:34,30,28,22
chr1	109856384	.	CAA	C	6252.42	PASS	AC=2;AF=0.821;AN=2;DP=5974;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:5271,376,0:0,0,60,65
chr1	109856836	.	A	AT	405.83	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=0;FractionInformativeReads=0.75;MQ=60;MQRankSum=0.576;QD=7.8;ReadPosRankSum=0.267;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:443,0,459:14,6,14,5
chr1	109869928	.	G	A	696.66	PASS	AC=1;AF=0.5;AN=2;DP=220;MQ=60;set=variant18-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:867,0,742:14,10,15,14
chr1	109870348	.	A	T	298.66	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.566;QD=27.15;ReadPosRankSum=1.106;SOR=1.802;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:93:327,0,93:0,3,0,8
chr1	109883576	.	C	CAT	2347.54	PASS	AC=2;AF=0.821;AN=2;DP=3391;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:4694,316,0:0,0,39,66
chr1	109884775	.	T	G	2120.88	PASS	AC=1;AF=0.793;AN=2;DP=2531;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,44:76:99:1082,0,800:13,19,17,27
chr1	109897103	.	A	G	3472.46	PASS	AC=2;AF=0.814;AN=2;DP=6288;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4212,422,0:0,0,81,60
chr1	109898263	.	A	ACC,C	461.51	PASS	AC=2,0;AF=0.703,0.095;AN=2;DP=705;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant2-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:19:60:0,0,0,19
chr1	109898267	.	GC	GCC,G,GCCC	569.21	PASS	AC=2,0,0;AF=0.534,0.155,0.052;AN=2;DP=443;set=variant-variant2-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant17-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant35-variant36-variant3-variant37-variant38-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:15:60:0,0,0,15
chr1	109940413	.	C	T	701.98	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0.918;FractionInformativeReads=1;MQ=60;MQRankSum=-0.822;QD=10.32;ReadPosRankSum=-0.577;SOR=0.836;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:730,0,814:15,20,13,20
chr1	109942152	.	A	G	2619.52	PASS	AC=1;AF=0.5;AN=2;DP=183;FS=4.535;FractionInformativeReads=1;MQ=60;MQRankSum=1.938;QD=14.31;ReadPosRankSum=-2.086;SOR=1.024;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:87,96:183:99:2648,0,2222:55,32,67,29
chr1	109943632	.	A	G	2549.7	PASS	AC=1;AF=0.5;AN=2;DP=156;FS=0.633;FractionInformativeReads=1;MQ=60;MQRankSum=-0.625;QD=16.34;ReadPosRankSum=-2.055;SOR=0.611;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:63,93:156:99:2578,0,1615:42,21,60,33
chr1	109943893	.	C	T	5712.37	PASS	AC=1;AF=0.793;AN=2;DP=5329;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,55:113:99:1664,0,1833:11,47,12,43
chr1	109944078	.	T	C	4468.35	PASS	AC=2;AF=0.821;AN=2;DP=4038;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3796,309,0:0,0,81,22
chr1	109944420	.	TAAA	T,TAAAA,TAA,TA	32.69	PASS	AC=0,0,1,0;AF=0.031,0.125,0.313,0.031;AN=2;DP=376;set=filterInvariant-filterInvariant4-variant7-variant8-variant9-variant10-variant18-filterInvariant21-variant25-variant33-variant37-variant38-filterInvariant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/3:16:17:2,1,4,9
chr1	109954678	.	C	T	1437.74	PASS	AC=1;AF=0.5;AN=2;DP=111;FS=1.576;FractionInformativeReads=1;MQ=60;MQRankSum=-0.522;QD=12.95;ReadPosRankSum=0.227;SOR=0.926;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,54:111:99:1466,0,1457:34,23,35,19
chr1	109955010	.	C	A	306.83	PASS	AC=2;AF=0.868;AN=2;DP=363;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:324,24,0:0,0,0,8
chr1	109958035	.	T	C	994.84	PASS	AC=2;AF=0.821;AN=2;DP=1648;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1238,117,0:0,0,13,26
chr1	109969032	.	G	C	3559.73	PASS	AC=1;AF=0.5;AN=2;DP=292;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.352;QD=12.19;ReadPosRankSum=1.913;SOR=0.676;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:141,151:292:99:3588,0,3369:61,80,66,85
chr1	110009171	.	C	T	148.54	PASS	AC=2;AF=0.833;AN=2;DP=537;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:607,54,0:0,0,10,8
chr1	110009434	.	A	C	1710.74	PASS	AC=2;AF=0.817;AN=2;DP=3173;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2193,197,0:0,0,43,23
chr1	110009509	.	C	G	2312.68	PASS	AC=1;AF=0.5;AN=2;DP=183;FS=1.16;FractionInformativeReads=1;MQ=60;MQRankSum=-0.87;QD=12.64;ReadPosRankSum=-1.296;SOR=0.802;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:83,100:183:99:2341,0,1878:46,37,58,42
chr1	110009654	.	AC	A	3479.38	PASS	AC=1;AF=0.788;AN=2;DP=6355;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,81:150:99:2127,0,1708:32,37,34,47
chr1	110018148	.	C	T	640.43	PASS	AC=2;AF=0.966;AN=2;DP=1921;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1523,132,0:0,0,31,13
chr1	110021938	.	C	T	2439.32	PASS	AC=1;AF=0.5;AN=2;DP=179;FS=0.559;FractionInformativeReads=1;MQ=60;MQRankSum=0.959;QD=13.63;ReadPosRankSum=0.428;SOR=0.639;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,99:179:99:2468,0,1886:48,32,58,41
chr1	110022074	.	A	ACAGGGC	4766.36	PASS	AC=1;AF=0.5;AN=2;DP=575;MQ=60;set=variant7-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,109:218:99:3855,0,6173:54,55,52,57
chr1	110022398	.	T	A	724.3	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=2.488;FractionInformativeReads=1;MQ=60;MQRankSum=-2.002;QD=15.09;ReadPosRankSum=-2.311;SOR=0.815;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:753,0,799:11,14,13,10
chr1	110023610	.	G	A	1652.32	PASS	AC=1;AF=0.619;AN=2;DP=1244;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant21-variant23-variant27-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:740,0,581:9,12,13,13
chr1	110030945	.	A	G	2546.63	PASS	AC=1;AF=0.591;AN=2;DP=1957;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant27-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,45:86:99:1110,0,995:21,20,21,24
chr1	110035159	.	T	C	789.89	PASS	AC=1;AF=0.553;AN=2;DP=1437;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant27-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:764,0,675:14,14,14,17
chr1	110035318	.	AT	A	902.55	PASS	AC=1;AF=0.636;AN=2;DP=841;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant27-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:586,0,473:13,8,16,8
chr1	110037838	.	T	G	955.73	PASS	AC=1;AF=0.595;AN=2;DP=2107;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,58:118:99:1328,0,1472:28,32,28,30
chr1	110040310	.	A	G	676.86	PASS	AC=1;AF=0.579;AN=2;DP=1199;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,31:66:99:823,0,866:19,16,18,13
chr1	110040452	.	TATGGGG	T	818.78	PASS	AC=1;AF=0.579;AN=2;DP=1295;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,32:72:99:1221,0,2279:20,20,12,20
chr1	110040460	.	C	CA	818.93	PASS	AC=1;AF=0.579;AN=2;DP=1263;MQ=60;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,32:73:99:1221,0,2279:20,21,12,20
chr1	110040680	.	C	T	659.84	PASS	AC=1;AF=0.679;AN=2;DP=1680;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:877,0,891:15,17,15,18
chr1	110040743	.	C	A	673.96	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.747;QD=14.98;ReadPosRankSum=-1.062;SOR=0.77;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:702,0,556:10,10,13,12
chr1	110041037	.	CAG	C	841.73	PASS	AC=1;AF=0.714;AN=2;DP=1990;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:1050,0,872:12,12,15,13
chr1	110041477	.	TAAAA	TAA,TAAAAA,TAAA,T	450.41	PASS	AC=0,0,1,0;AF=0.318,0.045,0.288,0.015;AN=2;DP=1010;set=variant-filterInvariant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant27-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:27:99:9,9,3,6
chr1	110042079	.	A	G	242.08	PASS	AC=1;AF=0.595;AN=2;DP=478;set=variant5-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:285,0,539:3,13,0,8
chr1	110042444	.	C	T	762.98	PASS	AC=1;AF=0.5;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant18-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,14:40:99:362,0,722:17,9,11,3
chr1	110048276	.	G	A	188.64	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=1.685;FractionInformativeReads=1;MQ=60;MQRankSum=-1.848;QD=7.86;ReadPosRankSum=-0.06;SOR=1.23;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:217,0,353:7,8,3,6
chr1	110052139	.	A	G	938.53	PASS	AC=1;AF=0.688;AN=2;DP=1945;MQ=60;set=variant4-variant5-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,21:68:99:398,0,1134:21,26,9,12
chr1	110082473	.	G	T	351.82	PASS	AC=1;AF=0.5;AN=2;DP=142;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant29-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:375,0,291:7,4,7,5
chr1	110091282	.	C	T	1329.05	PASS	AC=1;AF=0.5;AN=2;DP=453;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant29-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:911,0,600:15,11,22,10
chr1	110136458	.	A	G	17752.6	PASS	AC=1;AF=0.681;AN=2;DP=18413;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:267,226:493:99:5749,0,7024:127,140,103,123
chr1	110136938	.	T	TA	2073.72	PASS	AC=1;AF=0.5;AN=2;DP=665;MQ=60;set=variant2-variant4-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,65:135:99:1906,0,2086:19,51,17,48
chr1	110145758	.	ACCTGGGGGGTCTTCTAACTACTGG	A	758.76	PASS	AC=1;AF=0.611;AN=2;DP=1486;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:825,0,1259:16,3,19,2
chr1	110148974	.	C	T	1288.4	PASS	AC=1;AF=0.614;AN=2;DP=3205;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,42:83:99:955,0,986:23,18,27,15
chr1	110163076	.	A	G	256.95	PASS	AC=1;AF=0.671;AN=2;DP=1224;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,14:37:99:295,0,595:12,11,9,5
chr1	110164705	.	CCTGA	C	786.64	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=1.102;FractionInformativeReads=1;MQ=60;MQRankSum=0.12;QD=15.13;ReadPosRankSum=0.083;SOR=0.986;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:824,0,1804:17,13,14,8
chr1	110168888	.	C	G	1221.66	PASS	AC=1;AF=0.756;AN=2;DP=5322;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,82:139:99:2196,0,1478:28,29,43,39
chr1	110169190	.	C	T	380.2	PASS	AC=1;AF=0.545;AN=2;DP=429;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant8-variant19-variant20-variant21-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:470,0,638:12,9,8,11
chr1	110169957	.	A	G	2112.79	PASS	AC=2;AF=0.768;AN=2;DP=10170;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,252:252:99:9426,771,0:0,0,132,120
chr1	110169975	.	G	A	2805.61	PASS	AC=1;AF=0.5;AN=2;DP=243;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.946;QD=11.55;ReadPosRankSum=-0.574;SOR=0.679;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:126,117:243:99:2834,0,3287:62,64,58,59
chr1	110170896	.	T	C	897.79	PASS	AC=1;AF=0.756;AN=2;DP=4189;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,48:94:99:1293,0,1269:27,19,31,17
chr1	110171525	.	C	G	43.71	PASS	AC=1;AF=0.545;AN=2;DP=167;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant8-variant19-variant20-variant21-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:206,0,238:3,6,4,3
chr1	110171705	.	A	C	719.77	PASS	AC=1;AF=0.756;AN=2;DP=3311;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,64:114:99:1592,0,1187:29,21,38,26
chr1	110172346	.	T	TG	462.29	PASS	AC=2;AF=0.768;AN=2;DP=2044;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1586,150,0:0,0,28,22
chr1	110172658	.	A	G	574.46	PASS	AC=1;AF=0.571;AN=2;DP=251;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant8-variant19-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:537,0,548:9,10,6,12
chr1	110173094	.	G	C	133.44	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.684;QD=16.68;ReadPosRankSum=-0.322;SOR=0.33;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:162,0,113:0,3,1,4
chr1	110173775	.	G	T	2817.03	PASS	AC=1;AF=0.545;AN=2;DP=2600;MQ=60;set=variant2-variant4-variant6-variant8-variant19-variant20-variant21-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,130:242:99:3309,0,2873:51,61,63,67
chr1	110173863	.	C	T	1891.5	PASS	AC=1;AF=0.5;AN=2;DP=154;FS=0.612;FractionInformativeReads=1;MQ=60;MQRankSum=-0.952;QD=12.28;ReadPosRankSum=-1.991;SOR=0.751;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:85,69:154:99:1920,0,2392:32,53,25,44
chr1	110174157	.	A	C	449.33	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=2.252;FractionInformativeReads=0.985;MQ=60;MQRankSum=-0.919;QD=6.81;ReadPosRankSum=-0.288;SOR=1.11;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,21:65:99:478,0,1057:23,21,13,8
chr1	110174205	.	C	T	1455.69	PASS	AC=1;AF=0.545;AN=2;DP=1196;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant8-variant19-variant20-variant21-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,49:81:99:1393,0,746:20,12,25,24
chr1	110199172	.	CTGTGTGTGTGTG	CTGTGTGTGTGTGTGTG,CTGTGTGTGTG,CTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTG,CTGTGTG,CTGTG,CTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTG,C,CTGTGTGTGTGTGTGTGTGTGTGTG,CTG	426.42	PASS	AC=1,0,0,0,0,1,0,0,0,0,0,0,0;AF=0.125,0.138,0.075,0.038,0.013,0.125,0.05,0.075,0.025,0.013,0.025,0.013,0.013;AN=2;DP=3084;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	6/1:24:99:0,0,7,17
chr1	110199285	.	A	G	367.68	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=1.303;FractionInformativeReads=1;MQ=60;MQRankSum=1.702;QD=9.68;ReadPosRankSum=-2.18;SOR=0.633;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:396,0,676:10,13,8,7
chr1	110201580	.	C	T	5961.37	PASS	AC=2;AF=0.966;AN=2;DP=10086;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,256:256:99:7729,767,0:0,0,127,129
chr1	110201809	.	G	T	4909.9	PASS	AC=1;AF=0.919;AN=2;DP=3892;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1927,0,2824:28,26,26,24
chr1	110201812	.	A	G	4980.87	PASS	AC=1;AF=0.919;AN=2;DP=4015;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,50:103:99:1927,0,2833:27,26,26,24
chr1	110203174	.	C	T	932.56	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.856;QD=13.52;ReadPosRankSum=0.354;SOR=0.638;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,36:69:99:961,0,831:17,16,18,18
chr1	110203371	.	GAGAC	G	1123.33	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=5.062;FractionInformativeReads=0.955;MQ=60;MQRankSum=1.493;QD=17.02;ReadPosRankSum=1.961;SOR=1.3;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:1161,0,1727:17,16,11,19
chr1	110204008	.	C	T	101.04	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=58.49;MQRankSum=-1.281;QD=5.61;ReadPosRankSum=-2.563;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:99:129,0,446:2,11,0,5
chr1	110204479	.	A	G	181.87	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.485;QD=12.99;ReadPosRankSum=-0.065;SOR=1.402;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:210,0,241:1,7,0,6
chr1	110210780	.	C	G	2730.11	PASS	AC=1;AF=0.898;AN=2;DP=7796;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:84,88:172:99:2223,0,1963:36,48,36,52
chr1	110210818	.	C	T	148.61	PASS	AC=1;AF=0.645;AN=2;DP=2492;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,28:69:99:418,0,1090:20,21,15,13
chr1	110211681	.	G	C	198.56	PASS	AC=1;AF=0.708;AN=2;DP=1571;set=variant-variant5-filterInvariant10-filterInvariant11-filterInvariant12-variant13-variant16-variant17-variant18-filterInvariant20-filterInvariant21-variant23-variant24-variant26-variant27-variant29-variant34-filterInvariant35-variant36-variant37-variant40-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:84,15:99:99:263,0,1994:38,46,4,11
chr1	110214045	.	A	G	1629.57	PASS	AC=1;AF=0.5;AN=2;DP=163;FS=0.583;FractionInformativeReads=1;MQ=60;MQRankSum=-0.115;QD=10;ReadPosRankSum=2.559;SOR=0.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,71:163:99:1658,0,2334:50,42,37,34
chr1	110230278	.	T	C	819.67	PASS	AC=1;AF=0.9;AN=2;DP=168;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.648;ReadPosRankSum=-0.347;set=variant-variant21-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:760,0,886:24,5,20,5
chr1	110230442	.	C	A	5748.97	PASS	AC=1;AF=0.5;AN=2;DP=509;FS=0.521;FractionInformativeReads=1;MQ=60;MQRankSum=1.833;QD=11.29;ReadPosRankSum=-2.82;SOR=0.778;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:263,246:509:99:5777,0,6128:140,123,136,110
chr1	110230569	.	A	G	5532.48	PASS	AC=1;AF=0.9;AN=2;DP=1204;MQ=60;MQRankSum=2.632;ReadPosRankSum=-0.263;set=variant-variant21-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:206,194:400:99:4914,0,5015:84,122,82,112
chr1	110233057	.	T	C	4360.78	PASS	AC=1;AF=0.917;AN=2;DP=864;FractionInformativeReads=1;MQ=60;MQRankSum=-0.654;ReadPosRankSum=2.847;set=variant-variant21-variant27-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:116,125:241:99:3303,0,2936:44,72,50,75
chr1	110252010	.	T	C	2780.01	PASS	AC=1;AF=0.818;AN=2;DP=4014;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,35:76:99:820,0,1009:20,21,18,17
chr1	110252091	.	G	A	535.17	PASS	AC=1;AF=0.558;AN=2;DP=1203;set=variant-variant2-variant7-variant8-variant10-variant12-variant13-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,14:44:99:334,0,1112:3,27,2,12
chr1	110255111	.	T	G	130.66	PASS	AC=1;AF=0.5;AN=2;DP=393;set=filterInvariant19-filterInvariant21-filterInvariant37-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:55,25:80:99:325,0,1565:34,21,0,25
chr1	110255167	.	G	C	822.97	PASS	AC=1;AF=0.526;AN=2;DP=1832;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant9-variant13-variant14-variant17-variant18-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,46:99:99:1328,0,1482:24,29,21,25
chr1	110256127	.	G	A	1450.14	PASS	AC=1;AF=0.5;AN=2;DP=2843;set=variant-variant3-variant10-variant17-variant21-variant22-variant26-variant27-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:137,130:267:99:3036,0,3491:83,54,74,56
chr1	110256220	.	A	C	2450.12	PASS	AC=1;AF=0.531;AN=2;DP=5916;set=variant-variant7-variant9-variant13-variant14-variant17-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:197,173:370:99:4208,0,5009:92,105,82,91
chr1	110257590	.	T	C	941.25	PASS	AC=1;AF=0.5;AN=2;DP=515;set=variant-variant17-variant21-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,54:111:99:1360,0,1662:40,17,36,18
chr1	110260568	.	GGT	GGTGT,G	791.64	PASS	AC=1,0;AF=0.313,0.188;AN=2;DP=853;MQ=60;set=variant-variant17-variant21-filterInvariant25-variant27-filterInvariant30-filterInvariant37-variant41	GT:DP:GQ:SB	0/1:71:99:14,22,13,22
chr1	110260742	.	T	C	1550.03	PASS	AC=2;AF=0.559;AN=2;DP=1369;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant16-variant17-variant20-variant21-variant23-variant24-variant27-variant32-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2279,210,0:0,0,36,34
chr1	110276861	.	T	C	276.27	PASS	AC=1;AF=0.5;AN=2;DP=365;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant16-variant20-variant23-variant24-variant27-variant32-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,17:25:99:565,0,255:1,7,7,10
chr1	110278189	.	G	C	324.85	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=3.467;FractionInformativeReads=1;MQ=60;MQRankSum=0.537;QD=10.15;ReadPosRankSum=-2.264;SOR=1.659;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:353,0,431:8,11,3,10
chr1	110278255	.	GTTTTT	GTT,GATTTTT,G,GT	237.99	PASS	AC=0,0,1,0;AF=0.231,0.192,0.077,0.077;AN=2;DP=123;MQ=60;set=variant-variant6-variant7-variant9-variant10-variant12-variant21-variant27-variant31-variant32-variant41-variant42-variant44	GT:DP:GQ:SB	0/3:9:99:2,4,1,2
chr1	110278260	.	T	TAG	70.64	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.203;QD=7.85;ReadPosRankSum=-0.573;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,243:2,4,1,2
chr1	110278972	.	C	T	956.1	PASS	AC=1;AF=0.614;AN=2;DP=1200;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:560,0,455:9,7,6,10
chr1	110279053	.	GT	G	1080.93	PASS	AC=2;AF=0.667;AN=2;DP=3299;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2397,232,0:0,0,54,23
chr1	110279602	.	T	G	475.99	PASS	AC=1;AF=0.5;AN=2;DP=416;FractionInformativeReads=1;MQ=60;set=variant-variant17-variant18-variant21-variant27-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:687,0,823:15,14,10,13
chr1	110279821	.	C	A	3203.75	PASS	AC=1;AF=0.569;AN=2;DP=3239;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,57:121:99:1254,0,1627:31,33,27,30
chr1	110280252	.	ATCC	A	1988.18	PASS	AC=1;AF=0.6;AN=2;DP=1822;MQ=60;set=variant-variant7-variant13-variant17-variant18-variant21-variant25-variant27-variant28-variant32-variant34-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,63:127:99:2429,0,3110:29,35,26,37
chr1	110281941	.	G	A	535.18	PASS	AC=2;AF=0.654;AN=2;DP=2306;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2120,209,0:0,0,42,28
chr1	110282972	.	G	T	1244.63	PASS	AC=2;AF=0.654;AN=2;DP=8843;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,231:232:99:6926,682,0:0,1,102,129
chr1	110283785	.	C	T	355.34	PASS	AC=2;AF=0.671;AN=2;DP=493;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:403,30,0:0,0,1,9
chr1	110293792	.	G	A	1580.16	PASS	AC=1;AF=0.5;AN=2;DP=372;FractionInformativeReads=1;MQ=60;set=variant20-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,63:131:99:1511,0,1799:39,29,40,23
chr1	110294577	.	A	G	605.91	PASS	AC=2;AF=0.596;AN=2;DP=2584;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2174,199,0:0,0,40,27
chr1	110295643	.	G	T	663	PASS	AC=2;AF=0.6;AN=2;DP=1375;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,56:57:99:1740,160,0:0,1,36,20
chr1	110295772	.	T	C	754.36	PASS	AC=2;AF=0.679;AN=2;DP=3914;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2789,282,0:0,0,43,51
chr1	110295890	.	C	G	70.68	PASS	AC=2;AF=0.679;AN=2;DP=1424;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1160,114,0:0,0,14,24
chr1	110299550	.	A	G	368.62	PASS	AC=1;AF=0.63;AN=2;DP=991;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:715,0,649:17,5,18,5
chr1	110300504	.	A	G	2808.06	PASS	AC=2;AF=0.977;AN=2;DP=4432;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,74:75:99:2429,184,0:1,0,40,34
chr1	110301260	.	C	T	738.52	PASS	AC=2;AF=0.575;AN=2;DP=1708;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant13-variant16-variant17-variant18-variant21-variant23-variant24-variant27-variant32-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2405,210,0:0,0,19,51
chr1	110301766	.	AGTGTGTGTGT	AGT,AGTGTGT,AGTGTGTGTGTGT,AGTGTGTGT,AGTGT,A	464.39	PASS	AC=2,0,0,0,0,0;AF=0.216,0.239,0.034,0.33,0.114,0.011;AN=2;DP=1690;set=Intersection	GT:DP:GQ:SB	1/1:40:99:0,0,34,6
chr1	110304537	.	G	A	428.74	PASS	AC=2;AF=0.56;AN=2;DP=813;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1434,129,0:0,0,16,27
chr1	110306384	.	G	T	199.46	PASS	AC=1;AF=0.533;AN=2;DP=175;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant13-variant16-variant17-variant19-variant21-variant24-variant25-variant27-variant32-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:329,0,218:6,3,8,2
chr1	110306416	.	C	T	290.87	PASS	AC=1;AF=0.531;AN=2;DP=290;MQ=60;set=variant8-variant9-variant13-variant16-variant17-variant19-variant21-variant24-variant25-variant27-variant28-variant32-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:265,0,282:6,5,7,3
chr1	110306469	.	C	G	434.67	PASS	AC=1;AF=0.531;AN=2;DP=548;MQ=60;set=variant8-variant9-variant13-variant16-variant17-variant19-variant21-variant24-variant25-variant27-variant28-variant32-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:551,0,419:12,5,13,10
chr1	110306531	.	A	G	481.32	PASS	AC=1;AF=0.531;AN=2;DP=782;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant13-variant16-variant17-variant19-variant21-variant24-variant25-variant27-variant28-variant32-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,28:47:99:675,0,505:11,8,14,14
chr1	110456866	.	C	A	1343.94	PASS	AC=1;AF=0.559;AN=2;DP=2257;MQ=60;set=variant2-variant3-variant5-variant8-variant12-variant14-variant16-variant19-variant24-variant26-variant28-variant30-variant32-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,71:129:99:1754,0,1363:26,32,40,31
chr1	110466338	.	C	A	10561.2	PASS	AC=1;AF=0.736;AN=2;DP=16683;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:228,223:451:99:5171,0,5423:110,118,108,115
chr1	110466466	.	T	C	2651.33	PASS	AC=1;AF=0.62;AN=2;DP=5744;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:118,101:219:99:2604,0,3066:54,64,41,60
chr1	110466555	.	G	A	2141.19	PASS	AC=1;AF=0.5;AN=2;DP=187;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.204;QD=11.45;ReadPosRankSum=-1.434;SOR=0.674;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:96,91:187:99:2169,0,2456:49,47,46,45
chr1	110466709	.	T	C	4700.31	PASS	AC=2;AF=1;AN=2;DP=9366;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,213:213:99:6333,638,0:0,0,99,114
chr1	110466810	.	C	A	686.54	PASS	AC=1;AF=0.559;AN=2;DP=811;set=variant2-variant3-variant5-variant8-variant12-variant14-variant16-variant19-variant24-variant26-variant28-variant30-variant32-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:753,0,894:5,26,8,20
chr1	110467745	.	A	G	1909.4	PASS	AC=2;AF=1;AN=2;DP=3241;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2907,297,0:0,0,58,41
chr1	110469319	.	T	C	911.15	PASS	AC=2;AF=1;AN=2;DP=1252;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1172,93,0:0,0,6,25
chr1	110469411	.	A	G	119.98	PASS	AC=2;AF=0.704;AN=2;DP=292;MQ=60;set=variant-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:369,30,0:0,0,3,7
chr1	110472728	.	A	G	3419.93	PASS	AC=2;AF=1;AN=2;DP=5377;FS=0;MQRankSum=2.111;ReadPosRankSum=1.659;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3450,324,0:0,0,55,53
chr1	110472956	.	T	G	781.37	PASS	AC=1;AF=0.635;AN=2;DP=2533;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,70:125:99:1760,0,1341:29,26,32,38
chr1	110527452	.	G	GC	1977.62	PASS	AC=2;AF=1;AN=2;DP=3304;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2851,214,0:0,0,34,36
chr1	110527855	.	C	T	553.13	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.087;QD=12.02;ReadPosRankSum=-0.615;SOR=0.902;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:581,0,591:7,16,6,17
chr1	110546831	.	C	G	771.29	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.61;QD=9.89;ReadPosRankSum=-1.321;SOR=0.617;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:800,0,919:18,23,17,20
chr1	110558276	.	A	AC	2300.26	PASS	AC=2;AF=1;AN=2;DP=2429;FS=0;MQ=60;MQRankSum=1.299;ReadPosRankSum=-1.245;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2035,159,0:0,0,15,38
chr1	110560546	.	G	A	1067.55	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=1.521;FractionInformativeReads=1;MQ=60;MQRankSum=-0.967;QD=9.7;ReadPosRankSum=0.7;SOR=0.726;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,46:110:99:1096,0,1616:33,31,22,24
chr1	110560915	.	C	T	660.44	PASS	AC=1;AF=0.528;AN=2;DP=623;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant22-variant24-variant33-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:312,0,545:12,5,9,2
chr1	110564996	.	CAAAAAAA	CAAAAAA,CAAAAA,C	199.97	PASS	AC=1,0,0;AF=0.467,0.017,0.017;AN=2;DP=3062;set=filterInvariant4-filterInvariant5-filterInvariant7-variant8-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-variant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant44	GT:DP:GQ:SB	0/1:86:99:39,32,8,7
chr1	110566210	.	TA	TAA,T,TAAA	443.09	PASS	AC=0,0,1;AF=0.167,0.167,0.167;AN=2;DP=260;MQ=60;set=variant17-variant30-variant41	GT:DP:GQ:SB	0/3:66:99:19,16,17,14
chr1	110574133	.	G	A	477.8	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.739;QD=19.11;ReadPosRankSum=0.903;SOR=0.963;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:506,0,373:10,1,13,1
chr1	110580500	.	C	G	685.12	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=0.82;FractionInformativeReads=1;MQ=60;MQRankSum=1.345;QD=7.97;ReadPosRankSum=-0.835;SOR=0.826;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,35:86:99:713,0,1159:26,25,19,16
chr1	110580693	.	AATATATATATATATAT	AATATATATAT,A	44.18	PASS	AC=0,2;AF=0.25,0.5;AN=2;DP=12;FS=0;MQ=60;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant12-variant41	GT:DP:GQ:SB	2/2:2:7:0,0,1,1
chr1	110584115	.	A	ACC	1658.13	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=6.382;FractionInformativeReads=0.971;MQ=60;MQRankSum=-0.969;QD=16.1;ReadPosRankSum=-1.424;SOR=1.287;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,50:100:99:1695,0,1715:27,23,33,17
chr1	110587924	.	G	A	235.22	PASS	AC=2;AF=0.783;AN=2;DP=335;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant31-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:757,63,0:0,0,4,17
chr1	110587956	.	G	A	106.77	PASS	AC=1;AF=0.78;AN=2;DP=167;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant21-variant22-variant24-variant27-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:53:108,0,53:0,2,2,2
chr1	110592048	.	CTT	CT,C	219.47	PASS	AC=0,1;AF=0.382,0.132;AN=2;DP=1161;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:21:99:5,6,6,4
chr1	110594115	.	G	A	206.41	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.289;QD=17.2;ReadPosRankSum=0.289;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:235,0,105:3,1,5,3
chr1	110602872	.	A	G	651.66	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0.97;FractionInformativeReads=1;MQ=60;MQRankSum=-0.944;QD=10.03;ReadPosRankSum=-0.69;SOR=0.96;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,26:65:99:680,0,1044:19,20,11,15
chr1	110602982	.	G	A	1085.96	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=5.6;FractionInformativeReads=1;MQ=60;MQRankSum=0.552;QD=13.08;ReadPosRankSum=1.045;SOR=1.017;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,44:83:99:1114,0,1074:18,21,26,18
chr1	110603043	.	G	C	1705.19	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.496;QD=15.22;ReadPosRankSum=-1.484;SOR=0.682;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,67:112:99:1733,0,1066:23,22,33,34
chr1	110603286	.	A	AGGTGCTTCCTCCGTGGTGTCCAGGCAGG	1355.26	PASS	AC=2;AF=0.727;AN=2;DP=1811;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:3116,228,0:0,0,31,19
chr1	110603931	.	A	G	604.69	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=6.535;FractionInformativeReads=0.977;MQ=60;MQRankSum=-0.012;QD=13.74;ReadPosRankSum=-0.45;SOR=0.124;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:633,0,826:21,2,15,5
chr1	110612925	.	G	A	1166.69	PASS	AC=1;AF=0.688;AN=2;DP=1167;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:387,0,457:11,8,8,5
chr1	110656011	.	G	A	1054.25	PASS	AC=1;AF=0.548;AN=2;DP=1618;set=variant-variant6-variant7-variant8-variant9-variant11-variant12-variant16-variant17-variant21-variant23-variant24-variant31-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,39:80:99:902,0,1079:15,26,22,17
chr1	110693447	.	T	C	609.96	PASS	AC=1;AF=0.841;AN=2;DP=1762;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,11:32:99:258,0,583:7,14,5,6
chr1	110735037	.	T	G	234.41	PASS	AC=2;AF=0.731;AN=2;DP=1023;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1263,99,0:0,0,21,12
chr1	110735290	.	C	T	1528.55	PASS	AC=1;AF=0.5;AN=2;DP=289;MQ=60;set=variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,82:150:99:1966,0,1759:24,44,31,51
chr1	110738296	.	G	A	2385.65	PASS	AC=1;AF=0.679;AN=2;DP=6423;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:107,105:212:99:2719,0,2548:62,45,60,45
chr1	110740273	.	G	T	883.68	PASS	AC=1;AF=0.679;AN=2;DP=2187;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,25:67:99:637,0,1224:16,26,13,12
chr1	110740406	.	C	T	422.9	PASS	AC=1;AF=0.679;AN=2;DP=866;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:314,0,489:6,12,1,9
chr1	110740688	.	C	T	736.42	PASS	AC=1;AF=0.679;AN=2;DP=1905;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:697,0,786:18,12,20,10
chr1	110740931	.	G	A	2296.74	PASS	AC=1;AF=0.5;AN=2;DP=356;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,73:148:99:1940,0,2119:40,35,40,33
chr1	110741349	.	G	T	836.62	PASS	AC=2;AF=0.724;AN=2;DP=2252;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2072,183,0:0,0,31,30
chr1	110741583	.	C	G	959.41	PASS	AC=2;AF=0.724;AN=2;DP=3201;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3075,273,0:0,0,42,49
chr1	110742085	.	T	C	598.28	PASS	AC=2;AF=0.737;AN=2;DP=2388;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2558,228,0:0,0,40,36
chr1	110742615	.	A	G	246.94	PASS	AC=1;AF=0.679;AN=2;DP=717;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:234,0,443:12,4,8,2
chr1	110742992	.	T	G	370.51	PASS	AC=1;AF=0.679;AN=2;DP=1340;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:583,0,760:20,10,13,9
chr1	110754052	.	A	T	995.76	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=1.691;FractionInformativeReads=1;MQ=60;MQRankSum=-1.268;QD=10.06;ReadPosRankSum=1.669;SOR=0.521;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,45:99:99:1024,0,1273:36,18,28,17
chr1	110765535	.	C	G	358.85	PASS	AC=1;AF=0.7;AN=2;DP=1147;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:485,0,650:16,4,12,6
chr1	110775925	.	G	A	557.11	PASS	AC=1;AF=0.5;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,29:60:99:796,0,893:17,14,19,10
chr1	110881083	.	ACT	A	201.24	PASS	AC=1;AF=0.55;AN=2;DP=476;MQ=60;set=variant-variant10-variant15-variant22-variant23-variant35-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:439,0,609:9,7,9,3
chr1	110882444	.	A	G	3056.91	PASS	AC=2;AF=0.798;AN=2;DP=5430;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,113:114:99:3542,296,0:1,0,60,53
chr1	110883569	.	A	T	2933.85	PASS	AC=1;AF=0.5;AN=2;DP=5040;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant19-variant20-variant25-variant28-variant29-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:182,149:331:99:4031,0,4772:84,98,79,70
chr1	110888948	.	G	A	472.46	PASS	AC=1;AF=0.55;AN=2;DP=556;MQ=60;set=variant-variant10-variant15-variant22-variant23-variant35-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,34:60:99:779,0,562:13,13,20,14
chr1	110905683	.	T	C	1931.8	PASS	AC=1;AF=0.529;AN=2;DP=2686;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant19-variant20-variant25-variant27-variant28-variant29-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,60:133:99:1530,0,1812:34,39,25,35
chr1	110906247	.	CA	CAA,C	260.72	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=3855;set=filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:88:99:46,10,30,2
chr1	110917734	.	G	C	152.6	PASS	AC=1;AF=0.625;AN=2;DP=60;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant22-variant23-variant35-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:105,0,161:5,2,3,0
chr1	110922140	.	G	A	180.3	PASS	AC=2;AF=0.6;AN=2;DP=147;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant18-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant34-variant35-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:143,12,0:0,0,1,3
chr1	110924353	.	G	A	1641.18	PASS	AC=1;AF=0.5;AN=2;DP=2691;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant19-variant20-variant25-variant28-variant29-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:95,83:178:99:1956,0,2207:43,52,48,35
chr1	110949720	.	C	T	527.24	PASS	AC=1;AF=0.708;AN=2;DP=2084;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,27:63:99:658,0,1030:18,18,14,13
chr1	110949857	.	A	T	872.21	PASS	AC=1;AF=0.708;AN=2;DP=2905;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,31:77:99:816,0,1136:28,18,20,11
chr1	110950462	.	G	A	2756.85	PASS	AC=1;AF=0.563;AN=2;DP=1600;MQ=60;set=variant-variant10-variant22-variant23-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:105,95:200:99:2343,0,2692:44,61,45,50
chr1	110993739	.	C	A	1542.6	PASS	AC=1;AF=0.5;AN=2;DP=694;MQ=60;set=variant3-variant23-variant25-variant26-variant32-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,22:56:99:613,0,1144:28,6,19,3
chr1	110998766	.	T	A	346.42	PASS	AC=1;AF=0.625;AN=2;DP=578;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant25-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:157,0,224:6,0,6,1
chr1	110998784	.	G	A	244.48	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.337;QD=14.38;ReadPosRankSum=-0.048;SOR=0.836;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:273,0,265:6,2,7,2
chr1	110998854	.	G	A	1426.26	PASS	AC=1;AF=0.621;AN=2;DP=1883;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant25-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:891,0,761:18,12,21,9
chr1	111059812	.	CGA	CGAGA,C	551.28	PASS	AC=1,0;AF=0.5,0.032;AN=2;DP=1635;set=variant-variant2-variant4-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant41-variant43	GT:DP:GQ:SB	0/1:38:99:15,2,18,3
chr1	111060669	.	T	C	1565.12	PASS	AC=1;AF=0.776;AN=2;DP=6554;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,91:185:99:2283,0,2532:42,52,43,48
chr1	111061062	.	T	C	1258.06	PASS	AC=1;AF=0.776;AN=2;DP=3036;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,38:68:99:963,0,778:15,15,20,18
chr1	111144526	.	T	G	376.77	PASS	AC=2;AF=1;AN=2;DP=1048;FS=0;MQ=60;MQRankSum=1.542;ReadPosRankSum=-1.735;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:961,81,0:0,0,21,6
chr1	111173886	.	G	A	196.77	PASS	AC=1;AF=0.919;AN=2;DP=506;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:193,0,196:4,1,4,2
chr1	111215472	.	A	C	3554.35	PASS	AC=2;AF=0.813;AN=2;DP=3384;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3182,266,0:0,0,23,66
chr1	111217680	.	G	T	71.77	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.25;QD=3.78;ReadPosRankSum=-0.95;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,4:19:99:100,0,484:4,11,1,3
chr1	111390624	.	ATT	A,AT,ATTTT,ATTT	45.42	PASS	AC=0,1,0,0;AF=0.106,0.439,0.015,0.015;AN=2;DP=747;set=variant2-variant3-variant4-variant5-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/2:15:90:4,2,5,4
chr1	111436857	.	T	G	2446.77	PASS	AC=1;AF=0.739;AN=2;DP=5768;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:83,61:144:99:2295,0,4230:45,38,37,24
chr1	111436858	.	C	T	2446.77	PASS	AC=1;AF=0.739;AN=2;DP=5788;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:83,61:144:99:2295,0,4230:45,38,37,24
chr1	111437129	.	A	C	539.19	PASS	AC=1;AF=0.649;AN=2;DP=1684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:464,0,534:8,11,6,11
chr1	111437176	.	G	GA	678.17	PASS	AC=1;AF=0.739;AN=2;DP=1209;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:333,0,438:6,11,4,9
chr1	111437421	.	C	A	1466.73	PASS	AC=1;AF=0.784;AN=2;DP=1941;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,28:46:99:849,0,508:12,6,21,7
chr1	111441829	.	C	T	5138.69	PASS	AC=1;AF=0.739;AN=2;DP=8626;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:97,93:190:99:2463,0,2598:42,55,46,47
chr1	111442529	.	A	AAC	5980.9	PASS	AC=1;AF=0.784;AN=2;DP=4820;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:59,63:122:99:2418,0,2341:20,39,19,44
chr1	111442555	.	G	C	3345.2	PASS	AC=1;AF=0.784;AN=2;DP=2893;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,45:78:99:1321,0,953:7,26,11,34
chr1	111489897	.	T	TC	1891.14	PASS	AC=1;AF=0.5;AN=2;DP=6953;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant13-variant14-variant17-variant18-variant22-variant27-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:185,120:305:99:1724,0,7024:111,74,72,48
chr1	111489901	.	A	C	2975.33	PASS	AC=1;AF=0.526;AN=2;DP=6631;MQ=60;set=variant2-variant3-variant5-variant7-variant12-variant15-variant16-variant17-variant18-variant22-variant25-variant26-variant29-variant31-variant32-variant35-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:154,173:327:99:3822,0,3135:81,73,102,71
chr1	111489902	.	A	C	4235.34	PASS	AC=1;AF=0.5;AN=2;DP=1387;MQ=60;set=variant15-variant18-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:164,173:337:99:6411,0,6286:90,74,102,71
chr1	111489903	.	A	C	4098.03	PASS	AC=1;AF=0.5;AN=2;DP=1069;MQ=60;set=variant15-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:167,168:335:99:3597,0,6397:90,77,97,71
chr1	111661413	.	T	C	425.54	PASS	AC=1;AF=0.654;AN=2;DP=2071;MQ=60;set=variant2-variant6-variant7-variant8-variant9-variant13-variant16-variant18-variant19-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,43:69:99:1175,0,592:14,12,22,21
chr1	111680215	.	C	T	4188.23	PASS	AC=1;AF=0.635;AN=2;DP=10549;set=variant2-variant6-variant7-variant8-variant9-variant13-variant16-variant18-variant19-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:224,180:404:99:3971,0,5357:110,114,85,95
chr1	111682118	.	C	T	71.46	PASS	AC=1;AF=0.529;AN=2;DP=339;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant11-variant12-variant15-variant21-variant25-variant26-variant31-variant34-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,15:20:81:446,0,81:3,2,11,4
chr1	111682758	.	G	GC	4128.56	PASS	AC=1;AF=0.575;AN=2;DP=6142;MQ=60;set=variant6-variant7-variant9-variant13-variant16-variant19-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:167,169:336:99:4476,0,4333:85,82,86,83
chr1	111726026	.	G	A	348.03	PASS	AC=1;AF=0.654;AN=2;DP=840;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant8-variant9-variant13-variant16-variant18-variant19-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,19:35:99:503,0,399:11,5,13,6
chr1	111726213	.	A	G	251.83	PASS	AC=2;AF=0.716;AN=2;DP=1409;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1397,134,0:0,0,16,29
chr1	111727469	.	CTT	CTTT,CT,C	318.24	PASS	AC=1,1,0;AF=0.132,0.382,0.013;AN=2;DP=7551;set=filterInvariant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant20-variant22-filterInvariant23-variant24-variant25-filterInvariant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant39-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	2/1:139:99:13,26,38,62
chr1	111730901	.	C	T	1012.85	PASS	AC=1;AF=0.618;AN=2;DP=1403;MQ=60;set=variant6-variant7-variant9-variant13-variant16-variant19-variant23-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,47:91:99:1242,0,1083:20,24,16,31
chr1	111737183	.	C	T	609.37	PASS	AC=2;AF=0.75;AN=2;DP=1426;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1492,147,0:0,0,31,18
chr1	111737398	.	G	A	522.74	PASS	AC=1;AF=0.522;AN=2;DP=1023;set=variant2-variant3-variant5-variant6-variant11-variant12-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:656,0,416:6,11,8,16
chr1	111739771	.	G	GCAGGACAAA	6510.85	PASS	AC=1;AF=0.62;AN=2;DP=4098;MQ=60;set=variant2-variant3-variant5-variant6-variant11-variant12-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:97,77:174:99:3088,0,3830:41,56,36,41
chr1	111739788	.	C	T	1724.99	PASS	AC=1;AF=0.5;AN=2;DP=493;MQ=60;set=variant28-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,95:170:99:2250,0,1867:34,41,40,55
chr1	111740733	.	G	A	221.13	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.154;QD=7.37;ReadPosRankSum=0.506;SOR=0.627;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:249,0,570:6,14,3,7
chr1	111742714	.	A	C	284.76	PASS	AC=2;AF=0.951;AN=2;DP=435;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:32:319,32,0:0,0,8,3
chr1	111742761	.	T	C	340.68	PASS	AC=1;AF=0.909;AN=2;DP=816;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:184,0,235:5,2,3,3
chr1	111742838	.	G	C	540.13	PASS	AC=2;AF=0.909;AN=2;DP=1870;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1524,120,0:0,0,27,13
chr1	111742841	.	A	G	506.46	PASS	AC=1;AF=0.545;AN=2;DP=513;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant11-variant21-variant23-variant25-variant34-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:486,0,613:16,7,12,8
chr1	111768619	.	A	G	2143.71	PASS	AC=1;AF=0.5;AN=2;DP=2185;set=variant5-variant6-variant11-variant18-variant21-variant25-variant34-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:104,84:188:99:2132,0,2548:48,56,42,42
chr1	111768746	.	G	A	1646.03	PASS	AC=1;AF=0.5;AN=2;DP=859;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant11-variant21-variant25-variant34-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,44:80:99:1158,0,1012:9,27,16,28
chr1	111770423	.	T	G	3588.33	PASS	AC=1;AF=0.725;AN=2;DP=4916;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,44:95:99:1115,0,1255:28,23,20,24
chr1	111770591	.	A	G	582.02	PASS	AC=1;AF=0.5;AN=2;DP=387;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant11-variant21-variant25-variant34-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:604,0,735:6,17,10,14
chr1	111773273	.	T	C	552.18	PASS	AC=1;AF=0.55;AN=2;DP=350;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant11-variant21-variant25-variant34-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:571,0,689:18,1,14,4
chr1	111778241	.	C	T	2770.55	PASS	AC=2;AF=0.989;AN=2;DP=3577;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2953,276,0:0,0,46,46
chr1	111778824	.	T	C	822.72	PASS	AC=2;AF=0.737;AN=2;DP=1046;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1699,140,0:0,0,9,38
chr1	111783982	.	C	A,T	251.8	PASS	AC=0,1;AF=0.435,0.145;AN=2;DP=2187;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/2:62:99:23,14,14,11
chr1	111783996	.	A	G	1045.41	PASS	AC=2;AF=1;AN=2;DP=3606;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2214,216,0:0,0,42,30
chr1	111784148	.	T	G	2812.63	PASS	AC=2;AF=1;AN=2;DP=3694;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2135,201,0:0,0,28,39
chr1	111784816	.	G	A	1148.92	PASS	AC=1;AF=0.6;AN=2;DP=1717;MQ=60;set=variant5-variant11-variant15-variant18-variant21-variant25-variant26-variant30-variant32-variant34-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,50:119:99:1288,0,1837:44,25,29,21
chr1	111785930	.	T	C	2402.04	PASS	AC=1;AF=0.671;AN=2;DP=3319;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,50:100:99:1160,0,1356:24,26,20,30
chr1	111825883	.	T	C	1644.34	PASS	AC=1;AF=0.633;AN=2;DP=2496;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,53:81:99:1536,0,773:17,11,32,21
chr1	111833270	.	C	T	597.61	PASS	AC=1;AF=0.724;AN=2;DP=527;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant23-variant24-variant27-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:367,0,503:13,2,11,1
chr1	111833441	.	G	A	3642.99	PASS	AC=1;AF=0.717;AN=2;DP=4689;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant23-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,86:163:99:2080,0,1745:37,40,39,47
chr1	111833488	.	C	CCT	3386.9	PASS	AC=1;AF=0.717;AN=2;DP=3374;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant23-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,60:108:99:2296,0,1735:18,30,24,36
chr1	111833517	.	G	A	1810.55	PASS	AC=1;AF=0.717;AN=2;DP=2195;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant23-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,41:72:99:1044,0,802:8,23,14,27
chr1	111854005	.	C	G	428.67	PASS	AC=1;AF=0.989;AN=2;DP=463;FractionInformativeReads=1;MQ=60;MQRankSum=0.597;ReadPosRankSum=-0.278;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:135,0,203:5,2,4,0
chr1	111854096	.	A	G	1691.87	PASS	AC=1;AF=0.989;AN=2;DP=2289;MQ=60;MQRankSum=1.902;ReadPosRankSum=0.216;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,26:60:99:661,0,1044:25,9,18,8
chr1	111854755	.	A	C	293.72	PASS	AC=1;AF=0.989;AN=2;DP=601;FS=0;MQ=60;MQRankSum=-1.01;ReadPosRankSum=1.491;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:260,0,297:5,4,5,3
chr1	111857087	.	C	T	899.79	PASS	AC=2;AF=0.652;AN=2;DP=1598;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1592,141,0:0,0,33,14
chr1	111857154	.	T	C	1357.66	PASS	AC=2;AF=0.744;AN=2;DP=3645;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2712,260,0:0,0,51,36
chr1	111857685	.	G	C	165.95	PASS	AC=1;AF=0.526;AN=2;DP=339;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant9-variant10-variant17-variant20-variant22-variant23-variant25-variant26-variant29-variant31-variant32-variant33-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,10:12:55:304,0,55:1,1,6,4
chr1	111858291	.	T	C	2730.59	PASS	AC=2;AF=0.654;AN=2;DP=4162;MQ=60;set=variant3-variant4-variant6-variant7-variant9-variant12-variant13-variant14-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4711,454,0:0,0,81,71
chr1	111858444	.	C	T	1490.99	PASS	AC=2;AF=0.782;AN=2;DP=7252;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:6132,594,0:0,0,91,107
chr1	111858499	.	A	G	1072.51	PASS	AC=2;AF=0.647;AN=2;DP=4545;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:5131,463,0:0,0,57,98
chr1	111858525	.	TAAATATAAGAATAAGA	T	1032.7	PASS	AC=2;AF=0.647;AN=2;DP=3262;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:4630,323,0:0,0,34,73
chr1	111858542	.	CACTATCCTTGGCTT	C	1071.54	PASS	AC=2;AF=0.647;AN=2;DP=2950;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:4628,322,0:0,0,34,73
chr1	111858589	.	G	T	944.7	PASS	AC=2;AF=0.654;AN=2;DP=1182;MQ=60;set=variant3-variant4-variant6-variant7-variant9-variant12-variant13-variant14-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2916,207,0:0,0,19,50
chr1	111858603	.	G	T	792.32	PASS	AC=2;AF=0.654;AN=2;DP=922;MQ=60;set=variant3-variant4-variant6-variant7-variant9-variant12-variant13-variant14-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2439,166,0:0,0,14,39
chr1	111861508	.	T	C	562.1	PASS	AC=1;AF=0.625;AN=2;DP=372;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant12-variant13-variant14-variant16-variant19-variant23-variant24-variant25-variant27-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:138,0,166:1,4,1,3
chr1	111861714	.	T	A	580.92	PASS	AC=2;AF=0.731;AN=2;DP=1925;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1337,123,0:0,0,23,18
chr1	111861782	.	A	ATGCCCCTCAGGAAG	1254.22	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=2.121;FractionInformativeReads=0.91;MQ=60;MQRankSum=-0.733;QD=18.72;ReadPosRankSum=-1.575;SOR=0.461;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:1291,0,1292:20,14,14,13
chr1	111861841	.	A	G	993.55	PASS	AC=2;AF=0.744;AN=2;DP=3939;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2591,249,0:0,0,40,43
chr1	111861974	.	T	C	795.53	PASS	AC=1;AF=0.7;AN=2;DP=3204;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,43:92:99:1142,0,1227:25,24,25,18
chr1	111862074	.	C	T	559.69	PASS	AC=1;AF=0.5;AN=2;DP=416;FractionInformativeReads=1;MQ=60;set=variant9-variant17-variant22-variant23-variant25-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:760,0,1073:13,24,13,19
chr1	111862952	.	T	G	1390.45	PASS	AC=2;AF=0.744;AN=2;DP=5676;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4817,458,0:0,0,83,70
chr1	111863306	.	C	T	227.73	PASS	AC=1;AF=0.5;AN=2;DP=182;FractionInformativeReads=1;MQ=60;set=variant9-variant17-variant22-variant23-variant25-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:103,0,262:1,7,1,3
chr1	111890244	.	C	T	37.96	PASS	AC=1;AF=0.542;AN=2;DP=840;set=filterInvariant2-variant3-variant4-filterInvariant5-variant6-variant8-filterInvariant10-filterInvariant11-filterInvariant14-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant31-variant33-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:552,0,928:14,8,9,7
chr1	111892905	.	T	C	621.48	PASS	AC=1;AF=0.587;AN=2;DP=571;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant16-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant31-variant32-variant33-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:208,0,232:3,6,3,6
chr1	111893708	.	G	A	79.68	PASS	AC=1;AF=0.543;AN=2;DP=223;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant16-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant31-variant32-variant33-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:50:155,0,50:2,0,4,0
chr1	111893788	.	GTTTTT	GTTT,GTT,G,GTTTT,GTTTTTT,GT	117.88	PASS	AC=0,0,0,0,0,1;AF=0.114,0.171,0.2,0.071,0.014,0.014;AN=2;DP=1243;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-filterInvariant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/6:17:42:3,1,11,2
chr1	111893958	.	A	G	1346.77	PASS	AC=1;AF=0.565;AN=2;DP=2768;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant16-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant31-variant32-variant33-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,58:125:99:1458,0,1655:36,31,30,28
chr1	111894180	.	G	A	1046.88	PASS	AC=1;AF=0.571;AN=2;DP=888;MQ=60;set=variant3-variant4-variant6-variant14-variant16-variant19-variant22-variant23-variant25-variant27-variant33-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,36:63:99:1031,0,724:10,17,16,20
chr1	111894845	.	A	C	1147.82	PASS	AC=1;AF=0.5;AN=2;DP=1401;MQ=60;set=variant2-variant5-variant8-variant10-variant20-variant26-variant31-variant32-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,67:121:99:1580,0,1238:30,24,42,25
chr1	111894870	.	G	A	1437.74	PASS	AC=1;AF=0.5;AN=2;DP=1881;MQ=60;set=variant2-variant5-variant8-variant10-variant20-variant22-variant26-variant31-variant32-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,85:147:99:1938,0,1436:34,28,49,36
chr1	111894890	.	A	G	1527.34	PASS	AC=1;AF=0.5;AN=2;DP=2017;MQ=60;set=variant2-variant5-variant8-variant10-variant20-variant22-variant26-variant31-variant32-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,90:162:99:2121,0,1701:40,32,51,39
chr1	111895487	.	C	T	4918.48	PASS	AC=2;AF=0.69;AN=2;DP=3511;set=variant3-variant4-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4088,392,0:0,0,58,73
chr1	111957097	.	C	G	1133.92	PASS	AC=2;AF=0.75;AN=2;DP=1841;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2429,216,0:0,0,47,25
chr1	111957311	.	G	C	1621.67	PASS	AC=2;AF=0.55;AN=2;DP=1715;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant18-variant19-variant22-variant35-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:5935,567,0:0,0,88,101
chr1	111957501	.	CTCACAGACTGATGACTCACAGGGG	C	2277.44	PASS	AC=1;AF=0.611;AN=2;DP=3207;set=variant2-variant3-variant4-variant11-variant13-variant16-variant19-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,50:130:99:1790,0,4558:41,39,31,19
chr1	111957693	.	A	G	1449.04	PASS	AC=2;AF=0.75;AN=2;DP=4171;set=variant2-variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3904,369,0:0,0,55,68
chr1	111958885	.	C	A	208.65	PASS	AC=1;AF=0.5;AN=2;DP=227;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant15-variant18-variant23-variant25-variant26-variant30-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:519,0,533:14,2,15,3
chr1	111959167	.	G	A	980.13	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=0.874;FractionInformativeReads=1;MQ=60;MQRankSum=1.554;QD=11.4;ReadPosRankSum=1.58;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,36:86:99:1008,0,1432:16,34,13,23
chr1	111962152	.	T	C	269.47	PASS	AC=1;AF=0.5;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:474,0,489:12,6,12,5
chr1	111962209	.	G	A	794.1	PASS	AC=1;AF=0.5;AN=2;DP=861;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant15-variant18-variant23-variant25-variant26-variant30-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,37:68:99:1024,0,820:18,13,25,12
chr1	111964144	.	G	C,T	1728.03	PASS	AC=1,1;AF=0.5,0.042;AN=2;DP=1391;MQ=60;set=variant8-variant13-variant14-variant19-variant22-variant25-variant29-variant35-variant36-variant39-variant41-variant44	GT:DP:GQ:SB	1/2:121:99:0,0,56,65
chr1	111968121	.	C	T	1248.11	PASS	AC=1;AF=0.5;AN=2;DP=708;MQ=60;set=variant8-variant14-variant18-variant19-variant22-variant35-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,36:66:99:862,0,759:13,17,17,19
chr1	111968316	.	G	A	213.97	PASS	AC=2;AF=0.667;AN=2;DP=257;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:443,36,0:0,0,2,10
chr1	111968327	.	T	C	187.23	PASS	AC=2;AF=0.692;AN=2;DP=247;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:326,30,0:0,0,2,8
chr1	111969294	.	A	G	2351.11	PASS	AC=2;AF=0.685;AN=2;DP=4524;MQ=60;set=variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5044,500,0:0,0,76,91
chr1	111969307	.	G	C	2056.84	PASS	AC=1;AF=0.6;AN=2;DP=3256;MQ=60;set=variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,73:160:99:1778,0,2158:37,50,32,41
chr1	111969432	.	C	G	646.66	PASS	AC=1;AF=0.5;AN=2;DP=382;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant19-variant35-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:763,0,413:5,11,5,19
chr1	111969464	.	T	C	336.72	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=3.682;FractionInformativeReads=1;MQ=60;MQRankSum=0.136;QD=13.47;ReadPosRankSum=2.149;SOR=1.388;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:365,0,457:7,6,4,8
chr1	111969719	.	A	G	2643.83	PASS	AC=2;AF=0.685;AN=2;DP=5455;MQ=60;set=variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:5,165:170:99:4828,369,0:3,2,75,90
chr1	111970364	.	G	T	1890.08	PASS	AC=1;AF=0.5;AN=2;DP=128;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.346;QD=14.77;ReadPosRankSum=-1.603;SOR=0.699;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,76:128:99:1918,0,1289:24,28,35,41
chr1	111970431	.	TACACACACACACACACACAC	TACACACACACACACACACACAC,TACACACACACACACACAC,TACACACACACACACAC,TACACACACACACACACACACACACACACAC,TACACACACACAC,TACACACACACACAC,TACACACACACACACACACACACACACAC,TACACACACAC,TACACACACACACACACACACACACACACACACAC,TACACACACACACACACACACACAC,TACACACACACACACACACACACACACACACAC,TACACACACACACACACACACACACAC,T,TACACACAC	100.39	PASS	AC=0,0,1,0,0,0,0,0,0,0,0,0,0,1;AF=0.132,0.118,0.103,0.059,0.015,0.029,0.044,0.015,0.029,0.074,0.015,0.015,0.044,0.015;AN=2;DP=2081;set=variant-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant44	GT:DP:GQ:SB	14/3:22:99:0,3,4,15
chr1	111983152	.	A	G	269.08	PASS	AC=1;AF=0.5;AN=2;DP=220;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant19-variant22-variant35-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:176,0,330:8,5,4,4
chr1	111985229	.	G	T	1496.34	PASS	AC=2;AF=0.685;AN=2;DP=2803;MQ=60;set=variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3444,316,0:0,0,61,45
chr1	111991845	.	C	A	3165.86	PASS	AC=1;AF=0.667;AN=2;DP=6060;MQ=60;set=variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,101:223:99:2418,0,3202:65,57,51,50
chr1	111992095	.	C	T	2268.78	PASS	AC=1;AF=0.635;AN=2;DP=3839;MQ=60;set=variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,79:164:99:1995,0,2073:38,47,40,39
chr1	112004122	.	C	G	4902.88	PASS	AC=1;AF=0.6;AN=2;DP=5588;MQ=60;set=variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:137,116:253:99:3164,0,3613:52,85,43,73
chr1	112004523	.	GA	G,GAA	77.98	PASS	AC=1,0;AF=0.371,0.129;AN=2;DP=1256;set=filterInvariant-variant2-variant5-filterInvariant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant15-variant16-variant17-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:23:99:13,1,9,0
chr1	112004760	.	C	T	1612.72	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=0.652;FractionInformativeReads=1;MQ=60;MQRankSum=-0.818;QD=11.95;ReadPosRankSum=-1.991;SOR=0.784;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,63:135:99:1641,0,2119:29,43,24,39
chr1	112005069	.	T	G	1630.5	PASS	AC=1;AF=0.5;AN=2;DP=145;FS=0.612;FractionInformativeReads=1;MQ=60;MQRankSum=-1.189;QD=11.24;ReadPosRankSum=1.973;SOR=0.635;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,64:145:99:1659,0,2411:38,43,31,33
chr1	112005451	.	C	A	703.32	PASS	AC=1;AF=0.6;AN=2;DP=982;MQ=60;set=variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:796,0,683:12,17,16,18
chr1	112018657	.	G	A	1626.91	PASS	AC=1;AF=0.5;AN=2;DP=1773;MQ=60;set=variant3-variant11-variant13-variant16-variant19-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,53:112:99:1308,0,1449:30,29,26,27
chr1	112019875	.	AT	A	251.18	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=1.721;FractionInformativeReads=1;MQ=60;MQRankSum=-1.047;QD=10.05;ReadPosRankSum=-0.142;SOR=0.374;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:288,0,569:12,4,6,3
chr1	112020238	.	A	C	238.57	PASS	AC=2;AF=0.977;AN=2;DP=612;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:391,30,0:0,0,5,5
chr1	112021029	.	A	G	422.15	PASS	AC=1;AF=0.625;AN=2;DP=948;MQ=60;set=variant3-variant4-variant6-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:527,0,643:8,15,8,12
chr1	112028577	.	A	T	822.33	PASS	AC=1;AF=0.662;AN=2;DP=1762;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,28:58:99:811,0,901:7,23,6,22
chr1	112029193	.	A	G	794.17	PASS	AC=1;AF=0.821;AN=2;DP=2898;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,20:56:99:475,0,1026:24,12,8,12
chr1	112029325	.	A	G	1414.5	PASS	AC=1;AF=0.821;AN=2;DP=4505;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,34:85:99:754,0,1312:17,34,18,16
chr1	112032347	.	G	A	369.77	PASS	AC=1;AF=0.713;AN=2;DP=2946;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:934,0,966:15,21,12,24
chr1	112033456	.	G	GA	683.01	PASS	AC=1;AF=0.713;AN=2;DP=2711;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:753,0,638:11,12,10,18
chr1	112033515	.	T	C	491.2	PASS	AC=1;AF=0.7;AN=2;DP=1241;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:421,0,742:3,11,3,9
chr1	112033519	.	A	G	491.2	PASS	AC=1;AF=0.7;AN=2;DP=1149;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:378,0,748:3,11,2,8
chr1	112042131	.	T	C	411.89	PASS	AC=1;AF=0.821;AN=2;DP=2154;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:946,0,516:12,12,19,14
chr1	112042149	.	C	T	495.79	PASS	AC=1;AF=0.649;AN=2;DP=2110;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,41:71:99:1135,0,655:14,16,23,18
chr1	112042195	.	T	C	537.16	PASS	AC=1;AF=0.821;AN=2;DP=2812;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,52:78:99:1277,0,602:10,16,23,29
chr1	112042236	.	G	A	482.74	PASS	AC=1;AF=0.821;AN=2;DP=2472;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,45:71:99:1158,0,658:10,16,16,29
chr1	112042383	.	G	A	457.95	PASS	AC=1;AF=0.821;AN=2;DP=1633;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:442,0,340:6,5,10,4
chr1	112042632	.	A	G	1593.61	PASS	AC=1;AF=0.821;AN=2;DP=6084;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,68:123:99:1793,0,1264:26,29,30,38
chr1	112106342	.	C	T	1524.77	PASS	AC=2;AF=0.653;AN=2;DP=2374;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1951,180,0:0,0,38,22
chr1	112106384	.	G	T	1015.57	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=0.847;FractionInformativeReads=1;MQ=60;MQRankSum=0.934;QD=12.24;ReadPosRankSum=-0.287;SOR=0.536;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,43:83:99:1044,0,960:25,15,25,18
chr1	112106444	.	G	A	2653.75	PASS	AC=2;AF=0.907;AN=2;DP=5624;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3281,309,0:0,0,57,46
chr1	112162410	.	C	T	269.62	PASS	AC=1;AF=0.5;AN=2;DP=49;FractionInformativeReads=1;MQ=60;set=variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:228,0,205:3,6,6,4
chr1	112237915	.	A	T	420.52	PASS	AC=1;AF=0.734;AN=2;DP=372;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:64:229,0,64:2,0,6,1
chr1	112240038	.	CTT	CTTT,C,CT	381.84	PASS	AC=1,0,0;AF=0.167,0.091,0.242;AN=2;DP=3646;MQ=60;set=variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-filterInvariant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:72:99:23,19,19,11
chr1	112251983	.	C	G	2432.25	PASS	AC=1;AF=0.719;AN=2;DP=2411;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,33:56:99:848,0,699:6,17,15,18
chr1	112257193	.	T	C	6550.89	PASS	AC=1;AF=0.719;AN=2;DP=7034;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,90:193:99:2290,0,2848:50,53,38,52
chr1	112257784	.	C	T	140.31	PASS	AC=1;AF=0.733;AN=2;DP=370;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:92:428,0,92:1,2,2,10
chr1	112257992	.	G	A	983.71	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=3.941;FractionInformativeReads=1;MQ=60;MQRankSum=-0.968;QD=9.02;ReadPosRankSum=0.065;SOR=1.106;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,42:109:99:1012,0,1826:44,23,31,11
chr1	112258252	.	A	G	7006.46	PASS	AC=1;AF=0.706;AN=2;DP=9078;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,129:255:99:3421,0,3488:56,70,53,76
chr1	112266055	.	G	GC	398.78	PASS	AC=2;AF=0.93;AN=2;DP=1730;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:81:1009,81,0:0,0,15,11
chr1	112266300	.	A	G	1141.9	PASS	AC=2;AF=0.764;AN=2;DP=2122;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1776,171,0:0,0,32,25
chr1	112266366	.	T	C	1082.59	PASS	AC=2;AF=0.764;AN=2;DP=1903;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1616,159,0:0,0,25,28
chr1	112267187	.	GCACACACA	GCACACACACA,GCACACA,GCACA,G	405.53	PASS	AC=0,1,0,0;AF=0.045,0.364,0.136,0.045;AN=2;DP=839;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant28-variant29-variant30-filterInvariant31-variant32-variant34-variant35-variant37-variant38-variant39-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:26:76:11,10,4,1
chr1	112267346	.	G	A	616.36	PASS	AC=1;AF=0.5;AN=2;DP=74;FractionInformativeReads=1;MQ=60;set=variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,24:34:99:969,0,348:3,7,12,12
chr1	112267349	.	G	C	648.57	PASS	AC=1;AF=0.5;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,26:36:99:1012,0,342:3,7,13,13
chr1	112267354	.	C	T	1092.85	PASS	AC=1;AF=0.743;AN=2;DP=1376;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,9:34:99:219,0,1065:13,12,3,6
chr1	112267500	.	C	T	150.62	PASS	AC=1;AF=0.553;AN=2;DP=637;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant11-variant14-variant16-variant18-variant22-variant26-variant28-variant31-variant32-variant34-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:379,0,374:8,6,6,7
chr1	112267903	.	G	A	1102.03	PASS	AC=1;AF=0.5;AN=2;DP=165;FractionInformativeReads=1;MQ=60;set=variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,42:83:99:1191,0,1128:21,20,21,21
chr1	112268047	.	G	C,GC	1716.56	PASS	AC=2,0;AF=0.833,0.048;AN=2;DP=2402;MQ=60;set=variant3-variant5-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant4-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:66:99:1,0,28,37
chr1	112268284	.	G	A	2117.6	PASS	AC=1;AF=0.736;AN=2;DP=2660;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,28:68:99:706,0,990:22,18,10,18
chr1	112268425	.	C	G	256.97	PASS	AC=2;AF=0.951;AN=2;DP=379;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:506,39,0:0,0,3,10
chr1	112268666	.	T	C	260.51	PASS	AC=2;AF=0.94;AN=2;DP=702;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:673,57,0:0,0,14,5
chr1	112269333	.	GCA	G	69.58	PASS	AC=1;AF=0.5;AN=2;DP=150;MQ=60;set=variant7-filterInvariant12-filterInvariant32-filterInvariant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,6:25:99:148,0,609:10,9,3,3
chr1	112269872	.	G	A	1208.62	PASS	AC=2;AF=0.93;AN=2;DP=6615;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5439,518,0:0,0,88,85
chr1	112298582	.	A	G	2687.6	PASS	AC=1;AF=0.528;AN=2;DP=2733;MQ=60;set=variant3-variant7-variant9-variant11-variant14-variant15-variant16-variant18-variant19-variant23-variant30-variant31-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,85:142:99:2195,0,1400:26,31,42,43
chr1	112298829	.	T	C	67.47	PASS	AC=1;AF=0.596;AN=2;DP=564;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:407,0,185:3,5,6,10
chr1	112302010	.	G	T	724.04	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.71;QD=15.41;ReadPosRankSum=1.291;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,33:47:99:752,0,373:11,3,24,9
chr1	112303951	.	G	T	2234.35	PASS	AC=1;AF=0.5;AN=2;DP=221;FS=2.292;FractionInformativeReads=1;MQ=60;MQRankSum=-2.533;QD=10.11;ReadPosRankSum=-0.848;SOR=0.852;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:125,96:221:99:2263,0,3187:62,63,44,52
chr1	112304126	.	G	T	3581.75	PASS	AC=2;AF=1;AN=2;DP=3586;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2481,228,0:0,0,24,52
chr1	112305223	.	G	T	3909.81	PASS	AC=1;AF=0.5;AN=2;DP=261;FS=3.478;FractionInformativeReads=1;MQ=60;MQRankSum=2.507;QD=14.98;ReadPosRankSum=3.01;SOR=0.499;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:114,147:261:99:3938,0,3102:45,69,66,81
chr1	112308953	.	T	C	1492.65	PASS	AC=1;AF=0.596;AN=2;DP=2587;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,38:85:99:1023,0,1329:25,22,20,18
chr1	112308972	.	G	A	1438.6	PASS	AC=1;AF=0.596;AN=2;DP=2685;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,41:89:99:1162,0,1375:24,24,21,20
chr1	112313430	.	GT	G	2960.16	PASS	AC=1;AF=0.596;AN=2;DP=8114;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,138:280:99:2969,0,2739:76,66,70,68
chr1	112314288	.	GA	G	3623.47	PASS	AC=1;AF=0.5;AN=2;DP=290;FS=1.99;FractionInformativeReads=0.99;MQ=60;MQRankSum=1.623;QD=12.49;ReadPosRankSum=-0.703;SOR=0.571;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:167,120:287:99:3661,0,5358:78,89,60,60
chr1	112314822	.	A	G	4905.36	PASS	AC=1;AF=0.5;AN=2;DP=3877;MQ=60;set=variant3-variant7-variant9-variant11-variant14-variant30-variant31-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:147,136:283:99:3450,0,3649:76,71,70,66
chr1	112315450	.	A	C	3835.19	PASS	AC=1;AF=0.596;AN=2;DP=5496;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,123:231:99:3253,0,2582:43,65,49,74
chr1	112315603	.	T	C	1411.87	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=2.94;FractionInformativeReads=1;MQ=60;MQRankSum=0.619;QD=17.22;ReadPosRankSum=0.15;SOR=0.51;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,47:82:99:1440,0,1105:20,15,23,24
chr1	112316047	.	C	CT,CTT	1770.97	PASS	AC=2,0;AF=0.674,0.07;AN=2;DP=8133;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:113:99:1,8,26,78
chr1	112317196	.	G	C	270.54	PASS	AC=1;AF=0.577;AN=2;DP=428;FractionInformativeReads=1;MQ=60;set=variant-variant12-variant15-variant16-variant17-variant18-variant19-variant23-variant31-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:282,0,515:7,12,5,7
chr1	112317512	.	C	A	818.86	PASS	AC=1;AF=0.596;AN=2;DP=2083;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,43:83:99:1127,0,1042:22,18,23,20
chr1	112317877	.	T	A	1016.49	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=1.893;FractionInformativeReads=1;MQ=60;MQRankSum=-0.887;QD=13.55;ReadPosRankSum=-1.057;SOR=0.86;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,40:75:99:1045,0,868:17,18,22,18
chr1	112318484	.	A	G	234.66	PASS	AC=1;AF=0.645;AN=2;DP=654;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:99:99,0,285:6,3,0,3
chr1	112319899	.	C	A	655.93	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0.88;FractionInformativeReads=1;MQ=60;MQRankSum=1.168;QD=8.52;ReadPosRankSum=-0.304;SOR=0.53;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,33:77:99:684,0,1034:18,26,15,18
chr1	112319962	.	T	C	214.87	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=6.202;FractionInformativeReads=1;MQ=60;MQRankSum=-0.535;QD=5.81;ReadPosRankSum=0.146;SOR=0.136;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,12:37:99:243,0,756:5,20,5,7
chr1	112320846	.	T	G	111.22	PASS	AC=1;AF=0.6;AN=2;DP=76;FractionInformativeReads=1;MQ=60;set=variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:198,0,100:4,1,5,4
chr1	112323360	.	G	A	707.59	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=3.271;FractionInformativeReads=1;MQ=60;MQRankSum=-1.272;QD=9.56;ReadPosRankSum=-0.248;SOR=0.366;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,30:74:99:736,0,1213:28,16,16,14
chr1	112531507	.	C	A	1032.88	PASS	AC=1;AF=0.553;AN=2;DP=1385;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant22-variant24-variant27-variant28-variant30-variant31-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:650,0,825:17,16,15,13
chr1	112539061	.	A	G	546.05	PASS	AC=1;AF=0.5;AN=2;DP=930;MQ=60;set=variant11-variant12-variant13-variant18-variant20-variant24-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,54:116:99:1186,0,1567:33,29,26,28
chr1	112938917	.	C	T	541.71	PASS	AC=2;AF=0.583;AN=2;DP=570;MQ=60;set=variant-variant3-variant5-variant6-variant13-variant15-variant21-variant22-variant24-variant25-variant28-variant32-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:74:771,74,0:0,0,10,15
chr1	112954994	.	A	G	1009.99	PASS	AC=2;AF=0.92;AN=2;DP=2140;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1408,114,0:0,0,6,32
chr1	112991862	.	G	T	810.14	PASS	AC=1;AF=0.5;AN=2;DP=760;MQ=60;set=variant-variant3-variant5-variant13-variant15-variant24-variant32-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,37:83:99:907,0,1182:20,26,18,19
chr1	112991881	.	C	T	967.51	PASS	AC=1;AF=0.5;AN=2;DP=228;FractionInformativeReads=1;MQ=60;set=variant6-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,43:83:99:1045,0,985:19,21,19,24
chr1	112999000	.	G	A	1360.68	PASS	AC=1;AF=0.5;AN=2;DP=426;FractionInformativeReads=1;MQ=60;set=variant6-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:92,72:164:99:1730,0,2325:51,41,39,33
chr1	112999227	.	G	A	809.01	PASS	AC=2;AF=0.92;AN=2;DP=5547;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:4313,375,0:0,0,68,57
chr1	113000565	.	A	G	2295.69	PASS	AC=1;AF=0.5;AN=2;DP=1373;MQ=60;set=variant-variant3-variant5-variant13-variant15-variant24-variant32-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,69:127:99:2029,0,1671:20,38,27,42
chr1	113000592	.	A	G	1672.07	PASS	AC=1;AF=0.5;AN=2;DP=315;FractionInformativeReads=1;MQ=60;set=variant6-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,51:99:99:1573,0,1572:20,28,20,31
chr1	113000946	.	GGTCA	G	4509.33	PASS	AC=2;AF=0.909;AN=2;DP=8715;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,175:177:99:7676,410,0:1,1,93,82
chr1	113001049	.	A	G	3046.1	PASS	AC=1;AF=0.5;AN=2;DP=261;FS=2.082;FractionInformativeReads=1;MQ=60;MQRankSum=2.465;QD=11.67;ReadPosRankSum=0.461;SOR=0.856;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:137,124:261:99:3074,0,3583:71,66,69,55
chr1	113002480	.	G	A	3517.6	PASS	AC=1;AF=0.5;AN=2;DP=2903;MQ=60;set=variant-variant3-variant5-variant13-variant15-variant24-variant32-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:129,141:270:99:3956,0,3349:74,55,83,58
chr1	113002974	.	T	C	1972.94	PASS	AC=1;AF=0.5;AN=2;DP=368;FractionInformativeReads=1;MQ=60;set=variant-variant41	GT:AD:DP:GQ:PL:SB	0/1:98,69:167:99:1821,0,2512:50,48,33,36
chr1	113003365	.	C	A	1670.12	PASS	AC=1;AF=0.5;AN=2;DP=369;FractionInformativeReads=1;MQ=60;set=variant6-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,57:126:99:1531,0,1937:24,45,24,33
chr1	113009155	.	T	TA	449.41	PASS	AC=1;AF=0.667;AN=2;DP=139;MQ=60;set=variant6-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,28:47:99:658,0,403:14,5,22,6
chr1	113009166	.	A	AGAG	1042.08	PASS	AC=1;AF=0.625;AN=2;DP=238;MQ=60;set=variant6-variant10-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,29:52:99:1182,0,1020:18,5,23,6
chr1	113033459	.	T	C	469.65	PASS	AC=1;AF=0.5;AN=2;DP=68;FractionInformativeReads=1;MQ=60;set=variant6-variant28-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:418,0,177:5,1,11,0
chr1	113059220	.	T	A	226.96	PASS	AC=1;AF=0.786;AN=2;DP=228;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:25:155,0,25:0,1,3,3
chr1	113059877	.	T	A	1008.01	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=3.084;FractionInformativeReads=1;MQ=60;MQRankSum=0.447;QD=12;ReadPosRankSum=-2.807;SOR=1.127;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,36:84:99:1036,0,1404:29,19,25,11
chr1	113063125	.	A	G	1598.49	PASS	AC=1;AF=0.655;AN=2;DP=3899;MQ=60;set=variant-variant3-variant6-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,62:141:99:1423,0,2012:42,37,29,33
chr1	113063933	.	CTTTT	CT,CTTTTT,CTTT,CTT,CTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTT,C	1535.24	PASS	AC=1,0,1,0,0,0,0,0;AF=0.269,0.013,0.218,0.064,0.013,0.013,0.013,0.026;AN=2;DP=5982;set=variant-filterInvariant2-variant5-variant6-filterInvariant7-variant8-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-variant25-filterInvariant26-variant27-variant28-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/3:99:99:4,13,28,54
chr1	113064350	.	A	G	393.24	PASS	AC=1;AF=0.5;AN=2;DP=360;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant13-variant23-variant24-variant26-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:619,0,575:16,5,15,8
chr1	113064468	.	G	A	2205.12	PASS	AC=1;AF=0.579;AN=2;DP=2962;MQ=60;set=variant-variant6-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant25-variant30-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,65:123:99:1714,0,1514:36,22,42,23
chr1	113067792	.	A	G	483.85	PASS	AC=1;AF=0.575;AN=2;DP=1064;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant25-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,36:69:99:949,0,866:16,17,16,20
chr1	113083439	.	C	T	910.48	PASS	AC=1;AF=0.641;AN=2;DP=2119;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:889,0,701:15,9,22,8
chr1	113098534	.	C	T	2075.27	PASS	AC=1;AF=0.579;AN=2;DP=2291;MQ=60;set=variant-variant6-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant25-variant30-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,43:101:99:928,0,1402:25,33,21,22
chr1	113113167	.	GTATATATATATATA	G	396.96	PASS	AC=2;AF=0.972;AN=2;DP=171;FS=0;MQ=60;MQRankSum=0.898;ReadPosRankSum=1.271;set=variant-variant6-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant25-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:659,45,0:0,0,11,4
chr1	113162029	.	GC	GCC,G	683.4	PASS	AC=0,1;AF=0.3,0.2;AN=2;DP=471;MQ=60;set=variant3-variant6-filterInvariant10-variant37-filterInvariant41	GT:DP:GQ:SB	0/2:77:99:33,30,7,7
chr1	113202417	.	G	A	1003.72	PASS	AC=1;AF=0.671;AN=2;DP=2600;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,39:71:99:855,0,696:16,16,20,19
chr1	113212984	.	CTTTTTTTT	CTTTTTTTTTTTT,CTTTTTTTTTT,C,CTTTTTTTTTTT,CTTTTTTT,CTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTTTT	1051.6	PASS	AC=0,0,0,0,0,0,0,0,0,1;AF=0.039,0.197,0.013,0.118,0.105,0.066,0.026,0.013,0.013,0.013;AN=2;DP=8834;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-filterInvariant39-variant40-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	0/10:110:99:8,69,25,8
chr1	113234456	.	G	A	1771.32	PASS	AC=1;AF=0.671;AN=2;DP=6295;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,96:214:99:2453,0,2799:52,66,43,53
chr1	113239478	.	T	C	661.87	PASS	AC=1;AF=0.768;AN=2;DP=3491;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:871,0,822:13,20,15,19
chr1	113241552	.	G	A	334.41	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=2.251;FractionInformativeReads=1;MQ=60;MQRankSum=0.655;QD=12.39;ReadPosRankSum=-0.121;SOR=0.283;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:363,0,487:1,13,2,11
chr1	113242488	.	C	T	1449.51	PASS	AC=1;AF=0.725;AN=2;DP=6827;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,68:152:99:1704,0,2061:43,41,34,34
chr1	113244433	.	T	C	288.36	PASS	AC=1;AF=0.884;AN=2;DP=1599;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,12:35:99:344,0,683:7,16,5,7
chr1	113245532	.	A	C	49.21	PASS	AC=1;AF=0.5;AN=2;DP=410;MQ=60;set=filterInvariant3-variant4-variant5-variant9-variant14-filterInvariant19-variant21-variant23-variant24-variant29-variant32-variant34-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:32,7:39:76:76,0,1340:10,22,7,0
chr1	113247713	.	G	A	870.96	PASS	AC=1;AF=0.545;AN=2;DP=1010;MQ=60;set=variant-variant10-variant21-variant22-variant30-variant34-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,65:107:99:1626,0,1125:17,25,29,36
chr1	113248365	.	A	G	1217.7	PASS	AC=1;AF=0.716;AN=2;DP=3506;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,56:107:99:1321,0,1471:20,31,24,32
chr1	113248791	.	C	A	749.63	PASS	AC=1;AF=0.56;AN=2;DP=1761;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant10-variant12-variant13-variant17-variant21-variant22-variant24-variant26-variant28-variant30-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:830,0,594:9,13,15,15
chr1	113249486	.	C	G	505.28	PASS	AC=1;AF=0.56;AN=2;DP=1439;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant10-variant12-variant13-variant17-variant21-variant22-variant24-variant26-variant28-variant30-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,28:71:99:518,0,986:23,20,14,14
chr1	113249504	.	C	T	459.88	PASS	AC=1;AF=0.56;AN=2;DP=1421;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant10-variant12-variant13-variant17-variant21-variant22-variant24-variant26-variant28-variant30-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,27:69:99:538,0,1079:22,20,15,12
chr1	113249524	.	G	C	519.77	PASS	AC=1;AF=0.56;AN=2;DP=1443;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant10-variant12-variant13-variant17-variant21-variant22-variant24-variant26-variant28-variant30-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:614,0,912:21,15,15,14
chr1	113252614	.	C	A	929.41	PASS	AC=1;AF=0.652;AN=2;DP=2630;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,36:83:99:864,0,1289:31,16,20,16
chr1	113254267	.	G	C	818.78	PASS	AC=2;AF=0.869;AN=2;DP=1178;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,37:39:68:1174,68,0:1,1,10,27
chr1	113254484	.	A	G	230.3	PASS	AC=2;AF=1;AN=2;DP=615;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:485,39,0:0,0,11,2
chr1	113255389	.	C	T	215.28	PASS	AC=2;AF=0.989;AN=2;DP=872;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1001,93,0:0,0,21,10
chr1	113255456	.	C	A	831.92	PASS	AC=1;AF=0.5;AN=2;DP=604;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant13-variant22-variant24-variant26-variant28-variant33-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,19:50:99:487,0,758:16,15,11,8
chr1	113255686	.	TTGTGTG	TTGTGTGTG,TTGTGTGTGTG,TTGTG,T,TTG,TTGTGTGTGTGTG	80.4	PASS	AC=0,0,0,0,0,1;AF=0.485,0.015,0.044,0.015,0.015,0.015;AN=2;DP=565;set=variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/6:5:65:1,1,0,3
chr1	113263112	.	C	T	853.57	PASS	AC=1;AF=0.5;AN=2;DP=737;MQ=60;set=variant3-variant8-variant13-variant22-variant24-variant26-variant28-variant33-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:718,0,743:17,12,17,14
chr1	113263152	.	T	A	813.64	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0.827;FractionInformativeReads=0.976;MQ=60;MQRankSum=1.855;QD=9.57;ReadPosRankSum=-2.265;SOR=0.557;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,43:83:99:842,0,910:18,22,21,22
chr1	113264930	.	C	G	1081.17	PASS	AC=1;AF=0.5;AN=2;DP=1195;MQ=60;set=variant3-variant8-variant13-variant22-variant24-variant26-variant28-variant33-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,44:96:99:1038,0,1377:24,28,17,27
chr1	113269872	.	A	G	440.24	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.433;QD=9.57;ReadPosRankSum=0.309;SOR=0.608;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,21:46:99:468,0,588:9,16,8,13
chr1	113269946	.	G	A	89.46	PASS	AC=1;AF=0.5;AN=2;DP=180;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant11-variant13-variant19-variant22-variant24-variant27-variant28-variant30-variant31-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,179:1,5,0,4
chr1	113455099	.	G	A	4658.17	PASS	AC=1;AF=0.684;AN=2;DP=10481;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,123:233:99:3179,0,2760:50,60,55,68
chr1	113456546	.	A	T	2615.55	PASS	AC=1;AF=0.684;AN=2;DP=5626;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,88:172:99:2437,0,2204:39,45,36,52
chr1	113460676	.	CAATAAATAAATAAATAAATA	CAATAAATA,C,CAATAAATAAATAAATA,CAATAAATAAATA	171.5	PASS	AC=0,0,2,0;AF=0.042,0.042,0.5,0.208;AN=2;DP=200;FS=0;MQ=60;set=variant8-variant10-variant13-variant17-variant22-variant24-variant26-variant37-variant38-variant39-variant40-variant41	GT:DP:GQ:SB	3/3:13:39:0,0,4,9
chr1	113460687	.	T	G	165.66	PASS	AC=1;AF=0.625;AN=2;DP=43;FractionInformativeReads=1;MQ=60;set=variant13-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:54:325,0,54:2,2,3,8
chr1	113636924	.	T	C	525.76	PASS	AC=1;AF=0.943;AN=2;DP=691;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,12:17:99:320,0,132:4,1,8,4
chr1	113657092	.	A	C	3055.09	PASS	AC=1;AF=0.955;AN=2;DP=5575;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:61,69:130:99:1760,0,1537:37,24,43,26
chr1	113658887	.	G	A	3585.29	PASS	AC=1;AF=0.826;AN=2;DP=4665;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,55:108:99:1459,0,1374:32,21,28,27
chr1	113659065	.	ACT	A	5088.47	PASS	AC=1;AF=0.826;AN=2;DP=5943;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:1482,0,2013:19,32,13,26
chr1	113662249	.	G	C	160.11	PASS	AC=1;AF=0.593;AN=2;DP=535;MQ=60;set=variant2-variant4-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant21-variant22-variant24-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:338,0,397:1,10,1,8
chr1	113666349	.	TTG	TTTTGTG,TTGTGTGTGTG,T,TTTTGTGTG,TTTTTTGTGTGTGTG	48.29	PASS	AC=0,0,1,0,0;AF=0.033,0.3,0.1,0.033,0.033;AN=2;DP=195;set=variant5-variant6-variant8-variant9-variant13-variant18-variant20-variant21-variant25-variant26-variant29-variant33-variant40-variant41-variant44	GT:DP:GQ:SB	0/3:23:99:12,2,8,1
chr1	113666351	.	G	T	96.49	PASS	AC=1;AF=0.725;AN=2;DP=529;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:542,0,385:10,1,12,2
chr1	113666353	.	G	T	96.49	PASS	AC=1;AF=0.617;AN=2;DP=422;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant24-variant25-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:542,0,385:10,1,12,2
chr1	113933278	.	C	A	1159.83	PASS	AC=2;AF=1;AN=2;DP=1345;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:935,99,0:0,0,22,12
chr1	113933347	.	C	T	1015.1	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.495;QD=13.53;ReadPosRankSum=-0.452;SOR=0.704;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,41:75:99:1043,0,805:19,15,23,18
chr1	113933482	.	C	G	1575.5	PASS	AC=1;AF=0.545;AN=2;DP=1845;MQ=60;set=variant-variant4-variant7-variant9-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,45:95:99:965,0,1228:21,29,23,22
chr1	113933570	.	G	A	1221.2	PASS	AC=1;AF=0.533;AN=2;DP=1366;MQ=60;set=variant-variant4-variant7-variant12-variant13-variant17-variant19-variant21-variant22-variant27-variant31-variant32-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,34:78:99:777,0,1278:30,14,19,15
chr1	114092306	.	A	G	896.67	PASS	AC=1;AF=0.625;AN=2;DP=699;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant12-variant15-variant19-variant25-variant26-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:545,0,771:10,17,8,13
chr1	114137013	.	C	CAT	496.09	PASS	AC=1;AF=0.85;AN=2;DP=433;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:195,0,199:4,1,4,1
chr1	114161116	.	C	A	236.23	PASS	AC=1;AF=0.826;AN=2;DP=1135;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:299,0,291:5,8,4,8
chr1	114191994	.	G	A	2714.68	PASS	AC=1;AF=0.636;AN=2;DP=4960;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant19-variant24-variant25-variant26-variant28-variant30-variant31-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,114:221:99:2908,0,2617:49,58,57,57
chr1	114224782	.	AT	ATT,ATTT,A	498.3	PASS	AC=1,0,0;AF=0.476,0.085,0.012;AN=2;DP=2718;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:67:99:16,11,28,12
chr1	114228200	.	A	G	3092.37	PASS	AC=1;AF=0.636;AN=2;DP=4365;set=variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant19-variant24-variant25-variant26-variant28-variant30-variant31-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,96:194:99:2745,0,2575:53,45,54,42
chr1	114234690	.	C	T	426.63	PASS	AC=1;AF=0.636;AN=2;DP=461;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant19-variant24-variant25-variant26-variant28-variant30-variant31-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:226,0,221:6,1,4,4
chr1	114240319	.	T	TA	2043.5	PASS	AC=1;AF=0.826;AN=2;DP=5313;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,74:143:99:2317,0,2136:28,41,30,44
chr1	114242458	.	GA	G	249.92	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=0.9;MQ=60;MQRankSum=0.272;QD=12.5;ReadPosRankSum=0.453;SOR=0.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:287,0,159:1,6,2,9
chr1	114246453	.	C	T	223.27	PASS	AC=1;AF=0.826;AN=2;DP=740;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:156,0,233:7,2,5,3
chr1	114249382	.	C	T	878.68	PASS	AC=1;AF=0.826;AN=2;DP=2457;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,14:47:99:331,0,885:12,21,4,10
chr1	114267347	.	C	T	867.58	PASS	AC=1;AF=0.837;AN=2;DP=2741;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,31:64:99:806,0,813:19,14,17,14
chr1	114280717	.	A	C	163.58	PASS	AC=1;AF=0.744;AN=2;DP=1651;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:638,0,515:15,6,17,9
chr1	114301335	.	C	T	864.14	PASS	AC=1;AF=0.5;AN=2;DP=1219;MQ=60;set=variant-variant4-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:760,0,846:22,11,17,18
chr1	114302047	.	AGGC	A	108.54	PASS	AC=2;AF=1;AN=2;DP=624;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:529,36,0:0,0,4,8
chr1	114306368	.	TA	T	3115.24	PASS	AC=1;AF=0.533;AN=2;DP=3675;MQ=60;set=variant-variant4-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:116,87:203:99:2374,0,3279:55,61,42,45
chr1	114307237	.	AT	A,ATT	139.17	PASS	AC=0,1;AF=0.256,0.244;AN=2;DP=5971;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-variant22-variant24-variant25-variant26-filterInvariant27-variant28-variant30-variant31-variant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:119:99:48,27,24,20
chr1	114307292	.	GA	G	1612.69	PASS	AC=1;AF=0.533;AN=2;DP=3151;MQ=60;set=variant-variant4-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:99,85:184:99:1741,0,1993:44,55,42,43
chr1	114309172	.	C	T	539.83	PASS	AC=1;AF=0.8;AN=2;DP=494;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:146,0,202:0,5,0,4
chr1	114339956	.	C	CTAAA	436.29	PASS	AC=1;AF=0.837;AN=2;DP=1273;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:543,0,877:12,3,10,4
chr1	114357211	.	G	A	2103.48	PASS	AC=1;AF=0.845;AN=2;DP=4414;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,54:109:99:1579,0,1556:31,24,31,23
chr1	114372332	.	TA	T	608.67	PASS	AC=1;AF=0.703;AN=2;DP=1772;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-filterInvariant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:512,0,308:7,9,6,18
chr1	114377093	.	A	G	1549.49	PASS	AC=1;AF=0.845;AN=2;DP=2542;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:659,0,656:11,15,6,17
chr1	114377148	.	T	C	426.08	PASS	AC=1;AF=0.632;AN=2;DP=502;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant18-variant25-variant26-variant28-variant30-variant31-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:283,0,389:3,10,2,8
chr1	114377568	.	A	G	3643.61	PASS	AC=2;AF=0.92;AN=2;DP=4977;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2688,278,0:0,0,42,51
chr1	114399290	.	T	C	1176.14	PASS	AC=1;AF=0.5;AN=2;DP=121;FS=3.414;FractionInformativeReads=1;MQ=60;MQRankSum=-1.27;QD=9.72;ReadPosRankSum=0.187;SOR=1.077;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,49:121:99:1204,0,1837:34,38,19,30
chr1	114401231	.	A	G	411.31	PASS	AC=1;AF=0.703;AN=2;DP=821;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:430,0,362:3,10,5,11
chr1	114401904	.	T	G	580.95	PASS	AC=1;AF=0.703;AN=2;DP=842;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:477,0,252:7,2,13,2
chr1	114423544	.	AC	A	3598.73	PASS	AC=2;AF=0.609;AN=2;DP=5327;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,195:197:99:5846,531,0:1,1,95,100
chr1	114423653	.	C	T	2228.45	PASS	AC=2;AF=0.587;AN=2;DP=3749;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4424,413,0:0,0,63,75
chr1	114424601	.	C	T	1333.39	PASS	AC=2;AF=1;AN=2;DP=2508;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.643;ReadPosRankSum=1.244;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1156,114,0:0,0,16,22
chr1	114429340	.	T	C	1180.81	PASS	AC=2;AF=0.625;AN=2;DP=1825;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2189,216,0:0,0,26,46
chr1	114438951	.	A	G	1051.39	PASS	AC=2;AF=0.625;AN=2;DP=2445;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:3,112:115:99:3235,270,0:2,1,60,52
chr1	114440258	.	C	G	43.27	PASS	AC=2;AF=0.75;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,4,0
chr1	114447565	.	G	A	1886.34	PASS	AC=2;AF=0.609;AN=2;DP=3719;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:4710,484,0:0,0,80,83
chr1	114447776	.	C	G	1393.15	PASS	AC=2;AF=0.72;AN=2;DP=7147;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:5214,489,0:0,0,80,83
chr1	114447914	.	G	T	1449.15	PASS	AC=2;AF=0.625;AN=2;DP=3025;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3504,326,0:0,0,52,57
chr1	114449826	.	GTTTTTTTTTTTTTT	GTTTTTTTT,GTTTTTTT,GTTTTTTTTTTTTTTTTTTTTTT,GTTTTTTTTTTTT,G	490.04	PASS	AC=0,0,2,0,0;AF=0.136,0.091,0.273,0.045,0.182;AN=2;DP=388;set=variant-variant6-variant19-variant20-variant21-variant22-variant24-variant26-variant31-variant34-variant41	GT:DP:GQ:SB	3/3:4:11:0,0,0,4
chr1	114455907	.	G	A	527.76	PASS	AC=1;AF=0.55;AN=2;DP=816;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant11-variant13-variant16-variant18-variant23-variant24-variant26-variant27-variant29-variant31-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,6:31:99:166,0,712:12,13,2,4
chr1	114472218	.	A	G	337.51	PASS	AC=2;AF=0.72;AN=2;DP=1555;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1541,134,0:0,0,16,29
chr1	114472321	.	C	A	238.53	PASS	AC=1;AF=0.611;AN=2;DP=498;MQ=60;set=variant-variant2-variant4-variant5-variant12-variant14-variant15-variant19-variant22-variant23-variant24-variant26-variant28-variant32-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,17:28:99:426,0,233:6,5,6,11
chr1	114472650	.	C	T	750.26	PASS	AC=1;AF=0.5;AN=2;DP=832;MQ=60;set=variant4-variant6-variant8-variant11-variant16-variant18-variant23-variant24-variant26-variant27-variant29-variant31-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,9:38:99:166,0,685:13,16,3,6
chr1	114504860	.	G	A	437.23	PASS	AC=1;AF=0.5;AN=2;DP=600;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant8-variant11-variant16-variant18-variant23-variant24-variant26-variant27-variant31-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:502,0,484:14,4,13,7
chr1	114505000	.	G	A	1288.78	PASS	AC=1;AF=0.5;AN=2;DP=2085;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant8-variant11-variant16-variant18-variant23-variant24-variant26-variant27-variant31-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,57:127:99:1203,0,1650:35,35,27,30
chr1	114508757	.	G	A	1378.37	PASS	AC=1;AF=0.5;AN=2;DP=223;FractionInformativeReads=1;MQ=60;set=variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,60:103:99:1407,0,1042:23,20,33,27
chr1	114511369	.	A	G	277.33	PASS	AC=1;AF=0.5;AN=2;DP=48;FractionInformativeReads=1;MQ=60;set=variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:306,0,347:1,9,3,7
chr1	114512939	.	A	T	1923.76	PASS	AC=2;AF=0.72;AN=2;DP=1972;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1670,141,0:0,0,11,36
chr1	114515717	.	G	A	4114.76	PASS	AC=1;AF=0.613;AN=2;DP=5905;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:90,94:184:99:2190,0,2239:47,43,49,45
chr1	114519112	.	A	G	1079.8	PASS	AC=1;AF=0.5;AN=2;DP=171;FractionInformativeReads=1;MQ=60;set=variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,38:98:99:1108,0,1783:18,42,11,27
chr1	114519351	.	T	G	1351.74	PASS	AC=1;AF=0.625;AN=2;DP=1338;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:463,0,294:7,5,6,12
chr1	114521883	.	C	G	130.3	PASS	AC=2;AF=0.763;AN=2;DP=258;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:177,12,0:0,0,4,0
chr1	114522400	.	A	T	719.66	PASS	AC=1;AF=0.5;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,31:63:99:748,0,900:10,22,11,20
chr1	114523465	.	A	G	1433.91	PASS	AC=1;AF=0.611;AN=2;DP=1020;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:465,0,549:14,4,12,4
chr1	114631842	.	G	A	127.65	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.466;QD=11.6;ReadPosRankSum=1.031;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:156,0,145:4,1,4,2
chr1	114632071	.	G	A	205.61	PASS	AC=1;AF=0.525;AN=2;DP=413;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant23-variant25-variant30-variant31-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:170,0,348:7,8,5,3
chr1	114632321	.	G	C	589.47	PASS	AC=1;AF=0.5;AN=2;DP=92;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:578,0,662:14,11,14,8
chr1	114632341	.	T	C	627.93	PASS	AC=1;AF=0.5;AN=2;DP=98;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:599,0,637:14,11,15,10
chr1	114632770	.	G	T	792.09	PASS	AC=1;AF=0.5;AN=2;DP=132;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,41:67:99:1073,0,682:11,15,19,22
chr1	114633098	.	C	A	1026.38	PASS	AC=1;AF=0.5;AN=2;DP=764;MQ=60;set=variant2-variant14-variant15-variant16-variant28-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,50:109:99:1137,0,1711:37,22,32,18
chr1	114633310	.	C	T	2455.97	PASS	AC=1;AF=0.524;AN=2;DP=3159;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant25-variant30-variant31-variant33-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,71:160:99:2007,0,2591:44,45,36,35
chr1	114633910	.	A	G	2621.45	PASS	AC=1;AF=0.5;AN=2;DP=1844;MQ=60;set=variant2-variant14-variant15-variant16-variant28-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:117,109:226:99:2652,0,3197:43,74,44,65
chr1	114634367	.	C	CT	3534.96	PASS	AC=2;AF=0.864;AN=2;DP=7284;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:5,118:123:99:2968,224,0:3,2,61,57
chr1	114634399	.	C	T	1989.26	PASS	AC=1;AF=0.591;AN=2;DP=1564;set=variant2-variant10-variant11-variant14-variant15-variant16-variant21-variant28-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,66:118:99:1872,0,1345:25,27,26,40
chr1	114634933	.	A	T	52.04	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=0.917;MQ=59.65;MQRankSum=-1.66;QD=2.17;ReadPosRankSum=-1.319;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,4:22:80:80,0,631:3,15,0,4
chr1	114634962	.	G	C	225.67	PASS	AC=1;AF=0.563;AN=2;DP=130;set=variant12-variant16-variant19-variant20-variant25-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:120,0,145:1,5,0,5
chr1	114640807	.	G	A	52.74	PASS	AC=1;AF=0.591;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant12-variant14-variant15-variant23-variant24-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:79:79,0,280:3,7,1,3
chr1	114641685	.	A	G	2527.95	PASS	AC=2;AF=0.75;AN=2;DP=3357;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2959,279,0:0,0,62,31
chr1	114680310	.	G	A	1892.1	PASS	AC=1;AF=0.563;AN=2;DP=2860;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant13-variant16-variant25-variant26-variant29-variant33-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:92,82:174:99:2116,0,2688:50,42,47,35
chr1	114682001	.	A	C	317.41	PASS	AC=1;AF=0.643;AN=2;DP=297;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant13-variant25-variant26-variant29-variant33-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:383,0,295:8,3,10,3
chr1	114682780	.	G	C	201.22	PASS	AC=2;AF=0.872;AN=2;DP=493;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:247,18,0:0,0,2,4
chr1	114936079	.	T	A	1892.71	PASS	AC=1;AF=0.528;AN=2;DP=2226;set=variant3-variant8-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant30-variant31-variant32-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,50:99:99:1346,0,1407:17,32,21,29
chr1	114938090	.	A	AT	2931.84	PASS	AC=2;AF=0.565;AN=2;DP=4049;MQ=60;set=variant3-variant4-variant7-variant8-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5119,510,0:0,0,97,73
chr1	114938289	.	T	G	2707.57	PASS	AC=1;AF=0.528;AN=2;DP=2276;MQ=60;set=variant3-variant8-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant30-variant31-variant32-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,68:132:99:1802,0,1862:29,35,25,43
chr1	114938898	.	G	T	993.08	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=4.886;FractionInformativeReads=1;MQ=60;MQRankSum=-1.178;QD=14.6;ReadPosRankSum=-0.577;SOR=1.396;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:1021,0,956:16,17,12,23
chr1	114939730	.	G	GA	4816.92	PASS	AC=1;AF=0.5;AN=2;DP=2372;MQ=60;set=variant4-variant23-variant27-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:167,196:363:99:4985,0,4107:91,76,104,92
chr1	114940211	.	GT	GTT,G	255.92	PASS	AC=1,0;AF=0.462,0.038;AN=2;DP=761;set=variant-variant2-variant4-variant6-variant7-filterInvariant8-filterInvariant15-variant22-filterInvariant23-variant36-variant37-variant41-variant42	GT:DP:GQ:SB	0/1:45:99:4,29,2,10
chr1	114940215	.	T	TG	471.3	PASS	AC=1;AF=0.528;AN=2;DP=1020;set=variant3-variant8-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant30-variant31-variant32-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,30:55:99:815,0,807:4,21,4,26
chr1	114940632	.	CAA	CA,C	893.9	PASS	AC=1,0;AF=0.767,0.023;AN=2;DP=2348;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:35:99:5,9,6,15
chr1	114942296	.	T	C	229.81	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant23-variant27-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:66:66,0,198:0,5,0,2
chr1	114948281	.	A	G	5382.8	PASS	AC=2;AF=0.886;AN=2;DP=8416;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,190:190:99:5951,569,0:0,0,91,99
chr1	114949820	.	T	C	125.97	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant23-variant27-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:70:70,0,201:1,4,1,2
chr1	114951220	.	C	T	271.93	PASS	AC=2;AF=0.679;AN=2;DP=92;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant13-variant14-variant16-variant20-variant23-variant27-variant28-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:94,9,0:0,0,2,1
chr1	114951390	.	T	A	1039.44	PASS	AC=1;AF=0.526;AN=2;DP=995;MQ=60;set=variant3-variant7-variant8-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant30-variant31-variant32-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,19:51:99:397,0,684:18,14,9,10
chr1	114969925	.	GA	G	1342.13	PASS	AC=1;AF=0.526;AN=2;DP=1708;MQ=60;set=variant3-variant7-variant8-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant30-variant31-variant32-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,39:82:99:968,0,1078:13,30,15,24
chr1	114973429	.	T	C	1872.89	PASS	AC=2;AF=0.58;AN=2;DP=2840;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:2963,308,0:0,0,50,53
chr1	115006230	.	TAA	TA,T	231.02	PASS	AC=1,0;AF=0.545,0.023;AN=2;DP=532;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant20-variant21-variant23-variant26-variant27-variant28-variant31-variant35-variant36-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	0/1:13:11:1,1,1,10
chr1	115110683	.	A	C	4517.22	PASS	AC=1;AF=0.662;AN=2;DP=9866;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:137,142:279:99:3306,0,3088:58,79,63,79
chr1	115126114	.	AAC	A,AACAC,AACACAC,AACACACAC	60.97	PASS	AC=1,0,0,0;AF=0.257,0.203,0.027,0.014;AN=2;DP=4053;set=filterInvariant-filterInvariant3-variant4-filterInvariant5-variant7-variant8-filterInvariant9-variant10-variant11-variant12-filterInvariant15-variant16-filterInvariant17-variant18-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-variant27-filterInvariant28-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-filterInvariant38-variant39-filterInvariant40-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:59:99:12,37,2,8
chr1	115126428	.	CA	C,CAA,CAAA	68.09	PASS	AC=1,0,0;AF=0.379,0.106,0.03;AN=2;DP=1102;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-filterInvariant29-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:21:99:10,2,9,0
chr1	115126456	.	A	AAC	623.66	PASS	AC=1;AF=0.652;AN=2;DP=2363;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:865,0,823:22,5,22,5
chr1	115128087	.	A	G	3480.88	PASS	AC=2;AF=0.884;AN=2;DP=4542;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3507,324,0:0,0,54,54
chr1	115144304	.	C	T	40.7	PASS	AC=1;AF=0.571;AN=2;DP=215;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant11-variant12-variant13-variant14-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:144,0,275:2,6,0,4
chr1	115144703	.	A	G	4419.43	PASS	AC=2;AF=0.989;AN=2;DP=5457;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4133,422,0:0,0,68,73
chr1	115161140	.	C	T	336.48	PASS	AC=1;AF=0.545;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant11-variant12-variant13-variant14-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,5:19:99:115,0,435:3,11,1,4
chr1	115165472	.	T	A	219.8	PASS	AC=2;AF=0.893;AN=2;DP=467;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:313,24,0:0,0,7,1
chr1	115166350	.	ATTGT	A	277.87	PASS	AC=2;AF=0.943;AN=2;DP=256;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:167,12,0:0,0,0,4
chr1	115168600	.	A	T	2912.08	PASS	AC=1;AF=0.545;AN=2;DP=4766;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant11-variant12-variant13-variant14-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:120,91:211:99:2160,0,3176:63,57,45,46
chr1	115168822	.	C	T	1669.89	PASS	AC=1;AF=0.545;AN=2;DP=2219;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant11-variant12-variant13-variant14-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,52:99:99:1284,0,1304:14,33,21,31
chr1	115197384	.	TA	T	989.34	PASS	AC=1;AF=0.5;AN=2;DP=7951;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,61:135:99:661,0,1073:26,48,21,40
chr1	115218413	.	G	A	910.02	PASS	AC=1;AF=0.5;AN=2;DP=751;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant12-variant13-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,44:89:99:1025,0,1207:24,21,22,22
chr1	115220419	.	C	CTT	38.19	PASS	AC=1;AF=0.667;AN=2;DP=90;set=variant4-variant17-variant21-variant23-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:114,0,220:2,4,2,2
chr1	115220420	.	CTCCTTCCTTCCTTCCT	CTCCTTCCTTCCT,CTCCTTCCTTCCTTCCTTCCTTCCTTCCT,CCTTCCTTCCTTCCTTCCT,CTCCTTCCTTCCTTCCTTCCT,CTCCT,CTCCTTCCTTCCTTCCTTCCTTCCT,CCTTCCTTCCTTCCTTCCTTCCT,CCTTCCTTCCTTCCTTCCTTCCTTCCT,CTCCTTCCT,C	188.27	PASS	AC=0,0,0,0,0,0,1,0,1,0;AF=0.208,0.111,0.056,0.097,0.056,0.111,0.042,0.014,0.083,0.014;AN=2;DP=542;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant10-variant40-variant-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	9/7:7:97:0,0,3,4
chr1	115222434	.	G	A	202.45	PASS	AC=2;AF=0.91;AN=2;DP=396;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:353,27,0:0,0,1,8
chr1	115226990	.	CA	C	244.37	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=7.832;FractionInformativeReads=0.871;MQ=60;MQRankSum=0.655;QD=7.88;ReadPosRankSum=1.14;SOR=0.078;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:282,0,259:1,13,4,9
chr1	115238016	.	CAA	CA,CAAA,C	708.48	PASS	AC=1,0,0;AF=0.636,0.057,0.045;AN=2;DP=2106;set=Intersection	GT:DP:GQ:SB	0/1:42:95:6,3,26,7
chr1	115249843	.	G	A	3468.11	PASS	AC=1;AF=0.5;AN=2;DP=3478;MQ=60;set=variant-variant2-variant4-variant5-variant11-variant12-variant13-variant17-variant23-variant24-variant25-variant27-variant29-variant31-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,91:164:99:2564,0,2140:32,41,42,49
chr1	115256669	.	G	A	566.72	PASS	AC=1;AF=0.762;AN=2;DP=1518;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:405,0,539:3,15,2,11
chr1	115276978	.	GA	G,GAA	287.9	PASS	AC=1,0;AF=0.474,0.026;AN=2;DP=455;MQ=60;set=variant-variant2-variant4-variant5-variant11-variant12-variant13-variant17-variant23-variant24-variant25-variant27-variant29-variant31-variant35-variant36-variant39-variant41-variant44	GT:DP:GQ:SB	0/1:31:99:7,3,15,6
chr1	115284056	.	G	T	812.15	PASS	AC=1;AF=0.525;AN=2;DP=1369;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant17-variant23-variant24-variant25-variant27-variant29-variant31-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,40:89:99:939,0,1269:31,18,27,13
chr1	115292595	.	C	T	1040.26	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=5.843;FractionInformativeReads=1;MQ=60;MQRankSum=0.256;QD=13;ReadPosRankSum=0.75;SOR=0.293;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,44:80:99:1068,0,938:13,23,22,22
chr1	115300685	.	C	T	178.37	PASS	AC=1;AF=0.5;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant11-variant12-variant13-variant17-variant23-variant24-variant25-variant27-variant29-variant31-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:502,0,375:5,10,6,13
chr1	115313028	.	T	TA	1863.86	PASS	AC=1;AF=0.521;AN=2;DP=2562;MQ=60;set=variant-variant2-variant4-variant5-variant11-variant12-variant13-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,60:115:99:2595,0,2919:33,22,39,21
chr1	115313051	.	T	C	3091.49	PASS	AC=1;AF=0.5;AN=2;DP=2982;MQ=60;set=variant-variant2-variant4-variant5-variant11-variant12-variant13-variant17-variant23-variant24-variant25-variant27-variant31-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:95,103:198:99:3549,0,3883:59,36,66,37
chr1	115398044	.	GC	G	1490.87	PASS	AC=2;AF=1;AN=2;DP=2147;FS=0;MQ=60;MQRankSum=0;ReadPosRankSum=1.26;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,43:44:99:1323,122,0:1,0,31,12
chr1	115401136	.	G	A	900.98	PASS	AC=2;AF=1;AN=2;DP=1671;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.612;ReadPosRankSum=1.325;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1197,114,0:0,0,26,12
chr1	115403579	.	G	A	142.38	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=5.88;FractionInformativeReads=1;MQ=60;MQRankSum=-0.8;QD=10.17;ReadPosRankSum=0.133;SOR=2.546;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:171,0,193:3,6,0,5
chr1	115437985	.	C	T	511.14	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.955;QD=11.62;ReadPosRankSum=-2.392;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:539,0,475:10,10,11,13
chr1	115452848	.	G	A	197.63	PASS	AC=1;AF=0.5;AN=2;DP=208;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant11-variant12-variant13-variant16-variant20-variant22-variant23-variant25-variant26-variant28-variant32-variant33-variant35-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:267,0,131:4,0,6,3
chr1	115524216	.	C	T	84.86	PASS	AC=1;AF=0.597;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:142,0,245:0,6,0,4
chr1	115537933	.	A	G	1864.48	PASS	AC=1;AF=0.635;AN=2;DP=6179;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,95:179:99:2522,0,2066:44,40,48,47
chr1	115576023	.	A	G	6104.4	PASS	AC=2;AF=0.966;AN=2;DP=7743;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5114,507,0:0,0,99,71
chr1	115576175	.	G	A	1794.33	PASS	AC=1;AF=0.5;AN=2;DP=1442;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant12-variant13-variant16-variant23-variant25-variant33-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,64:103:99:1788,0,1097:12,27,23,41
chr1	115590794	.	GTA	GTATA,G	566.89	PASS	AC=1,0;AF=0.52,0.02;AN=2;DP=1418;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-filterInvariant29-variant32-variant33-variant35-variant37-variant38-variant41-variant43	GT:DP:GQ:SB	0/1:42:99:6,13,9,14
chr1	115590998	.	T	C	610.02	PASS	AC=1;AF=0.649;AN=2;DP=2228;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,29:55:99:613,0,611:16,10,15,14
chr1	115591053	.	T	G	1001.17	PASS	AC=1;AF=0.5;AN=2;DP=1717;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant29-variant30-variant31-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,41:77:99:921,0,1367:19,17,23,18
chr1	115591058	.	T	C	812.86	PASS	AC=1;AF=0.542;AN=2;DP=1796;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant32-variant33-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:776,0,1612:23,18,20,17
chr1	115591163	.	A	G	1141.97	PASS	AC=1;AF=0.578;AN=2;DP=2755;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,45:103:99:1175,0,1634:38,20,27,18
chr1	115592610	.	GAC	G	8388.47	PASS	AC=1;AF=0.583;AN=2;DP=10313;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:213,185:398:99:6971,0,8142:104,109,96,89
chr1	115592820	.	T	C	2964.15	PASS	AC=1;AF=0.542;AN=2;DP=5246;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant32-variant33-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:117,111:228:99:2908,0,3197:59,58,56,55
chr1	115601615	.	A	G	2210.3	PASS	AC=2;AF=0.943;AN=2;DP=2592;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1431,125,0:0,0,12,30
chr1	115615358	.	T	C	220.49	PASS	AC=1;AF=0.661;AN=2;DP=602;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant24-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:262,0,355:8,4,8,0
chr1	115631924	.	C	T	2391.46	PASS	AC=2;AF=0.966;AN=2;DP=4717;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2775,286,0:0,0,54,42
chr1	115829313	.	G	A	2025.67	PASS	AC=1;AF=0.594;AN=2;DP=7072;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,97:183:99:2314,0,2137:40,46,44,53
chr1	115880675	.	A	C	786.78	PASS	AC=1;AF=0.533;AN=2;DP=1605;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant11-variant15-variant19-variant20-variant22-variant31-variant33-variant34-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,46:100:99:1129,0,1229:31,23,27,19
chr1	116206423	.	G	A	3099.41	PASS	AC=1;AF=0.5;AN=2;DP=2650;FractionInformativeReads=1;MQ=60;set=variant5-variant15-variant27-variant29-variant31-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:154,146:300:99:3670,0,3911:84,70,80,66
chr1	116224925	.	G	A	346.57	PASS	AC=2;AF=0.744;AN=2;DP=1121;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:71:849,71,0:0,0,17,7
chr1	116224940	.	C	A	550.68	PASS	AC=2;AF=0.744;AN=2;DP=1588;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:994,84,0:0,0,20,8
chr1	116225180	.	A	C	603.51	PASS	AC=2;AF=0.744;AN=2;DP=1404;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1682,144,0:0,0,14,34
chr1	116226749	.	TTTTATTTATTTA	TTTTATTTATTTATTTA,T	85.38	PASS	AC=1,0;AF=0.438,0.063;AN=2;DP=188;MQ=60;set=variant-variant10-variant11-variant14-variant15-variant27-variant29-variant41	GT:DP:GQ:SB	0/1:5:75:1,1,0,3
chr1	116227638	.	T	C	150.2	PASS	AC=1;AF=0.5;AN=2;DP=64;MQ=60;set=variant-variant10-variant14-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:231,0,216:6,1,6,0
chr1	116227664	.	C	T	246.16	PASS	AC=1;AF=0.5;AN=2;DP=80;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:258,0,348:9,3,7,0
chr1	116228220	.	C	T	186.16	PASS	AC=2;AF=0.692;AN=2;DP=1374;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1237,123,0:0,0,14,27
chr1	116234217	.	C	T	786.77	PASS	AC=1;AF=0.5;AN=2;DP=279;FractionInformativeReads=1;MQ=60;set=variant13-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,30:59:99:986,0,836:13,16,13,17
chr1	116234300	.	C	T	557.6	PASS	AC=1;AF=0.5;AN=2;DP=232;MQ=60;set=variant13-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:858,0,752:13,13,16,16
chr1	116234313	.	A	G	625.63	PASS	AC=2;AF=0.737;AN=2;DP=2092;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1859,159,0:0,0,27,26
chr1	116234505	.	A	G	773.41	PASS	AC=2;AF=0.737;AN=2;DP=2159;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1781,162,0:0,0,26,28
chr1	116234694	.	C	A	1042.33	PASS	AC=1;AF=0.5;AN=2;DP=401;FractionInformativeReads=1;MQ=60;set=variant13-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,50:94:99:1262,0,1104:24,20,25,25
chr1	116236351	.	T	G	4982.11	PASS	AC=2;AF=0.635;AN=2;DP=8071;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,283:283:99:8992,845,0:0,0,160,123
chr1	116236489	.	C	T	3653.73	PASS	AC=1;AF=0.5;AN=2;DP=1533;MQ=60;set=variant11-variant13-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:142,145:287:99:3683,0,3736:59,83,65,80
chr1	116236581	.	G	A	3031.54	PASS	AC=1;AF=0.625;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:99,91:190:99:2356,0,2842:46,53,44,47
chr1	116237417	.	C	T	503.51	PASS	AC=1;AF=0.5;AN=2;DP=216;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:559,0,555:10,12,11,10
chr1	116237496	.	T	A	1447.81	PASS	AC=1;AF=0.609;AN=2;DP=1160;MQ=60;set=variant2-variant3-variant5-variant7-variant11-variant12-variant13-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,21:49:99:511,0,691:14,14,11,10
chr1	116238478	.	C	T	638.95	PASS	AC=2;AF=0.635;AN=2;DP=1283;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1249,108,0:0,0,17,19
chr1	116238504	.	C	T	582.87	PASS	AC=2;AF=0.625;AN=2;DP=347;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant11-variant13-variant14-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1301,111,0:0,0,19,18
chr1	116239266	.	C	T	1187.41	PASS	AC=2;AF=0.625;AN=2;DP=885;MQ=60;set=variant-variant10-variant11-variant13-variant14-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4099,401,0:0,0,68,66
chr1	116239368	.	G	A	963.53	PASS	AC=2;AF=0.635;AN=2;DP=1690;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2687,227,0:0,0,36,40
chr1	116239751	.	A	G	1746.15	PASS	AC=2;AF=0.654;AN=2;DP=2904;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,89:91:99:3230,219,0:2,0,35,54
chr1	116239841	.	A	T	1619.04	PASS	AC=2;AF=0.635;AN=2;DP=3316;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3481,314,0:0,0,56,49
chr1	116239995	.	A	T	2643.75	PASS	AC=2;AF=0.635;AN=2;DP=6147;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,226:226:99:6912,677,0:0,0,118,108
chr1	116240212	.	C	T	787.58	PASS	AC=2;AF=0.625;AN=2;DP=422;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant11-variant13-variant14-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2122,159,0:0,0,12,41
chr1	116240321	.	T	G	425.24	PASS	AC=1;AF=0.5;AN=2;DP=153;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:264,0,461:7,9,7,3
chr1	116240721	.	A	G	4007.94	PASS	AC=1;AF=0.625;AN=2;DP=1409;MQ=60;set=variant-variant10-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:152,185:337:99:4802,0,3731:74,78,84,101
chr1	116240756	.	T	TC	3911.67	PASS	AC=2;AF=0.625;AN=2;DP=2931;MQ=60;set=variant-variant10-variant11-variant13-variant14-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,335:336:99:10184,987,0:0,1,149,186
chr1	116240921	.	C	T	518.6	PASS	AC=2;AF=0.635;AN=2;DP=765;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1094,81,0:0,0,1,26
chr1	116242844	.	AT	A,ATT	4645.78	PASS	AC=1,0;AF=0.589,0.018;AN=2;DP=4600;MQ=60;set=variant2-variant3-variant5-filterInvariant6-variant7-filterInvariant8-variant11-variant12-variant13-variant15-variant17-filterInvariant18-variant19-filterInvariant20-filterInvariant24-variant25-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:131:99:26,31,34,40
chr1	116243230	.	C	G	2248.67	PASS	AC=2;AF=0.711;AN=2;DP=4863;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3441,341,0:0,0,61,53
chr1	116243380	.	G	A	979.63	PASS	AC=2;AF=0.711;AN=2;DP=3143;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2385,234,0:0,0,35,43
chr1	116243724	.	A	G	403.1	PASS	AC=1;AF=0.625;AN=2;DP=161;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:515,0,565:14,7,12,7
chr1	116243877	.	G	A	606.68	PASS	AC=2;AF=0.625;AN=2;DP=1526;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant25-variant27-variant29-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2699,231,0:0,0,48,29
chr1	116245809	.	C	T	289.6	PASS	AC=1;AF=0.7;AN=2;DP=854;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:437,0,378:2,10,6,11
chr1	116247790	.	G	A	779.38	PASS	AC=1;AF=0.64;AN=2;DP=1787;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant15-variant18-variant21-variant23-variant24-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,30:69:99:800,0,952:23,16,21,9
chr1	116268178	.	GAAAA	GAA,GA,GAAA,G,GAAAAA	187.7	PASS	AC=0,0,0,0,1;AF=0.328,0.207,0.017,0.086,0.034;AN=2;DP=1868;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant40-variant41	GT:DP:GQ:SB	0/5:32:99:11,9,3,9
chr1	116283343	.	A	G	1910	PASS	AC=1;AF=0.869;AN=2;DP=3358;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,43:79:99:1088,0,822:18,18,25,18
chr1	116283526	.	G	A	882.94	PASS	AC=1;AF=0.869;AN=2;DP=1334;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:573,0,314:4,9,5,14
chr1	116287682	.	T	C	860.7	PASS	AC=1;AF=0.621;AN=2;DP=568;MQ=60;set=variant-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:277,0,229:0,6,1,7
chr1	116310818	.	G	C	282.99	PASS	AC=1;AF=0.615;AN=2;DP=627;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant18-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:660,0,602:17,1,17,4
chr1	116310967	.	T	C	5107.94	PASS	AC=1;AF=0.615;AN=2;DP=4482;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant15-variant18-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,78:165:99:1976,0,2315:46,41,41,37
chr1	116311198	.	T	C	1594.43	PASS	AC=2;AF=0.966;AN=2;DP=2757;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2347,225,0:0,0,37,38
chr1	116311366	.	GCACACA	GCACACACACACACA,GCACACACACACA,G	318.35	PASS	AC=1,0,0;AF=0.477,0.136,0.023;AN=2;DP=471;set=variant2-variant4-variant5-variant6-variant7-variant11-variant14-variant15-variant18-variant21-variant23-variant24-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:18:99:5,9,1,3
chr1	116379230	.	C	T	4208.05	PASS	AC=1;AF=0.5;AN=2;DP=344;FS=0.816;FractionInformativeReads=1;MQ=60;MQRankSum=1.052;QD=12.23;ReadPosRankSum=-2.631;SOR=0.757;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:184,160:344:99:4236,0,4812:88,96,74,86
chr1	116380029	.	T	C	3489.23	PASS	AC=1;AF=0.724;AN=2;DP=2913;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,56:114:99:1461,0,1433:22,36,19,37
chr1	116380172	.	C	T	1396.97	PASS	AC=1;AF=0.667;AN=2;DP=1568;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,18:56:99:380,0,1050:21,17,8,10
chr1	116381459	.	G	A	1553.82	PASS	AC=1;AF=0.5;AN=2;DP=154;FS=1.289;FractionInformativeReads=1;MQ=60;MQRankSum=-1.332;QD=10.09;ReadPosRankSum=3;SOR=0.565;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:89,65:154:99:1582,0,2444:38,51,30,35
chr1	116382120	.	G	T	1359.75	PASS	AC=1;AF=0.5;AN=2;DP=148;FS=0.619;FractionInformativeReads=1;MQ=60;MQRankSum=-0.122;QD=9.19;ReadPosRankSum=-1.295;SOR=0.625;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:84,64:148:99:1388,0,2033:34,50,27,37
chr1	116382318	.	A	G	1931.12	PASS	AC=1;AF=0.895;AN=2;DP=2477;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:803,0,800:14,18,15,18
chr1	116382463	.	G	T	378.95	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.243;FractionInformativeReads=0.976;MQ=60;MQRankSum=0.693;QD=9.24;ReadPosRankSum=-1.4;SOR=0.793;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:407,0,656:12,10,8,10
chr1	116382511	.	A	T	2523.41	PASS	AC=2;AF=1;AN=2;DP=2842;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1578,132,0:0,0,29,15
chr1	116382778	.	T	C	4069.38	PASS	AC=2;AF=1;AN=2;DP=5118;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3083,292,0:0,0,40,58
chr1	116383300	.	T	C	2991.08	PASS	AC=2;AF=1;AN=2;DP=4151;FS=0;MQ=60;MQRankSum=-0.297;ReadPosRankSum=1.242;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3567,305,0:0,0,28,74
chr1	116384090	.	G	A	6262.12	PASS	AC=2;AF=0.925;AN=2;DP=7512;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:5956,566,0:0,0,99,90
chr1	116384773	.	A	G	2713.84	PASS	AC=2;AF=0.741;AN=2;DP=3199;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3274,325,0:0,0,55,54
chr1	116385171	.	C	T	849.65	PASS	AC=2;AF=0.741;AN=2;DP=1477;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1427,132,0:0,0,21,23
chr1	116385309	.	C	A	592.2	PASS	AC=1;AF=0.724;AN=2;DP=1032;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:559,0,450:10,8,9,11
chr1	116385721	.	T	C	198.61	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2441;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:68,29:97:99:334,0,1396:4,64,28,1
chr1	116385727	.	A	C	456.9	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2606;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:68,23:91:99:119,0,3601:6,62,23,0
chr1	116385732	.	T	C	187.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1811;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:64,15:79:99:130,0,3515:3,61,15,0
chr1	116386139	.	G	A	3449.83	PASS	AC=2;AF=1;AN=2;DP=4473;FS=0;MQRankSum=1.597;ReadPosRankSum=1.597;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3386,312,0:0,0,43,61
chr1	116386244	.	C	T	6155.89	PASS	AC=1;AF=0.724;AN=2;DP=6363;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,120:241:99:2908,0,2990:72,49,72,48
chr1	116519370	.	C	A	1856.61	PASS	AC=1;AF=0.5;AN=2;DP=186;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.926;QD=9.98;ReadPosRankSum=-1.469;SOR=0.666;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:103,83:186:99:1885,0,2372:44,59,36,47
chr1	116534852	.	C	T	2165.52	PASS	AC=1;AF=0.773;AN=2;DP=3592;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,59:130:99:1284,0,1722:30,41,27,32
chr1	116569530	.	G	C	1501.42	PASS	AC=2;AF=0.955;AN=2;DP=2085;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1233,107,0:0,0,26,10
chr1	116574306	.	G	A	1261.76	PASS	AC=1;AF=0.869;AN=2;DP=2225;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,32:60:99:923,0,719:12,16,13,19
chr1	116577981	.	G	A	1664.38	PASS	AC=2;AF=1;AN=2;DP=1864;FS=0;MQ=60;MQRankSum=-0.139;ReadPosRankSum=0.208;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1506,132,0:0,0,11,33
chr1	116605423	.	C	T	3595.95	PASS	AC=1;AF=0.6;AN=2;DP=568;FractionInformativeReads=1;MQ=60;set=variant11-variant17-variant19-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,52:116:99:1252,0,1644:36,28,28,24
chr1	116607254	.	G	T	1111.4	PASS	AC=2;AF=0.989;AN=2;DP=815;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.935;ReadPosRankSum=-1.203;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:580,42,0:0,0,1,13
chr1	116609126	.	TC	T	3546.49	PASS	AC=1;AF=0.845;AN=2;DP=3970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,58:117:99:1636,0,1629:33,26,36,22
chr1	116610227	.	G	A	8648.57	PASS	AC=1;AF=0.884;AN=2;DP=11065;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,111:235:99:2721,0,3166:53,71,45,66
chr1	116610388	.	A	G	1927.79	PASS	AC=2;AF=1;AN=2;DP=3210;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2952,258,0:0,0,42,44
chr1	116610599	.	G	GA	7231.31	PASS	AC=1;AF=0.75;AN=2;DP=7786;MQ=60;set=variant-variant2-variant4-variant6-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,95:210:99:2134,0,2806:62,53,55,40
chr1	116611548	.	A	G	6852.16	PASS	AC=2;AF=0.955;AN=2;DP=8775;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:6204,584,0:0,0,96,99
chr1	116611705	.	T	C	2860.36	PASS	AC=1;AF=0.845;AN=2;DP=4181;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,51:99:99:1304,0,1261:16,32,19,32
chr1	116655492	.	A	G	306.28	PASS	AC=1;AF=0.5;AN=2;DP=168;MQ=60;set=variant3-variant4-variant8-variant11-variant17-variant19-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:333,0,311:2,8,3,8
chr1	116666569	.	T	A	991.04	PASS	AC=1;AF=0.607;AN=2;DP=275;MQ=60;set=variant3-variant4-variant8-variant10-variant11-variant17-variant19-variant26-variant31-variant34-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:390,0,199:5,1,10,0
chr1	116670071	.	G	T	2351.11	PASS	AC=1;AF=0.5;AN=2;DP=195;FS=2.465;FractionInformativeReads=1;MQ=60;MQRankSum=0.245;QD=12.06;ReadPosRankSum=-1.306;SOR=0.895;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,96:195:99:2379,0,2371:50,49,53,43
chr1	116670774	.	A	G	4217.49	PASS	AC=1;AF=0.607;AN=2;DP=1579;MQ=60;set=variant3-variant4-variant8-variant10-variant11-variant17-variant19-variant26-variant31-variant34-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,51:112:99:1253,0,1440:28,33,26,25
chr1	116676035	.	A	C	3917.31	PASS	AC=1;AF=0.607;AN=2;DP=1403;MQ=60;set=variant3-variant4-variant8-variant10-variant11-variant17-variant19-variant26-variant31-variant34-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,47:106:99:1278,0,1709:20,39,18,29
chr1	116676548	.	A	G	2479.5	PASS	AC=1;AF=0.55;AN=2;DP=736;MQ=60;set=variant3-variant4-variant8-variant11-variant17-variant26-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,45:95:99:1045,0,1409:29,21,26,19
chr1	116676668	.	G	C	1971.45	PASS	AC=1;AF=0.607;AN=2;DP=760;MQ=60;set=variant3-variant4-variant8-variant10-variant11-variant17-variant19-variant26-variant31-variant34-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,27:67:99:768,0,1141:13,27,9,18
chr1	116916056	.	C	T	1899.43	PASS	AC=1;AF=0.5;AN=2;DP=1208;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant15-variant18-variant26-variant35-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,50:90:99:1171,0,1204:21,19,26,24
chr1	116916085	.	C	CT	1841.93	PASS	AC=1;AF=0.5;AN=2;DP=120;FS=2.36;FractionInformativeReads=0.992;MQ=60;MQRankSum=-0.678;QD=15.35;ReadPosRankSum=0.954;SOR=0.947;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,60:119:99:1879,0,1844:32,27,36,24
chr1	116927689	.	A	G	458.46	PASS	AC=1;AF=0.5;AN=2;DP=166;MQ=60;set=variant6-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,29:47:99:850,0,558:3,15,7,22
chr1	116932563	.	T	A	683.36	PASS	AC=2;AF=0.863;AN=2;DP=624;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:544,45,0:0,0,3,12
chr1	116932735	.	T	G	39.19	PASS	AC=1;AF=0.5;AN=2;DP=51;FractionInformativeReads=1;MQ=60;set=variant6-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:424,0,377:10,2,11,1
chr1	116933115	.	CT	C	202.53	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=5.155;FractionInformativeReads=0.841;MQ=60;MQRankSum=0.302;QD=4.6;ReadPosRankSum=-0.557;SOR=1.623;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,13:37:99:240,0,527:10,14,3,10
chr1	116933158	.	GT	GTT,G	53.04	PASS	AC=0,1;AF=0.375,0.125;AN=2;DP=124;set=variant-variant4-variant14-variant27-variant34-variant35-variant6-filterInvariant41	GT:DP:GQ:SB	0/2:12:69:1,7,2,2
chr1	116933372	.	G	A	1036.44	PASS	AC=1;AF=0.6;AN=2;DP=500;FractionInformativeReads=1;MQ=60;set=variant6-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,56:102:99:1468,0,1221:25,21,34,22
chr1	116937728	.	G	A	1226.7	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=4.655;FractionInformativeReads=1;MQ=60;MQRankSum=-0.104;QD=10.67;ReadPosRankSum=-0.635;SOR=1.124;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,50:115:99:1255,0,1570:37,28,33,17
chr1	116940481	.	CT	C,CTT	65.51	PASS	AC=1,0;AF=0.409,0.091;AN=2;DP=3947;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant5-variant6-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-variant21-filterInvariant23-filterInvariant25-filterInvariant27-filterInvariant29-filterInvariant30-filterInvariant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-variant38-variant39-filterInvariant40-variant41-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:116:99:26,18,40,32
chr1	116943971	.	CAT	C	780.18	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=1.357;FractionInformativeReads=0.973;MQ=60;MQRankSum=0.481;QD=21.09;ReadPosRankSum=-0.064;SOR=0.407;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:817,0,556:5,10,9,12
chr1	116946635	.	T	C	723.77	PASS	AC=1;AF=0.5;AN=2;DP=153;MQ=60;set=variant6-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:646,0,749:9,19,2,18
chr1	116947412	.	G	A	126.15	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.851;QD=12.62;ReadPosRankSum=2.45;SOR=0.16;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:154,0,167:0,5,1,4
chr1	116948712	.	G	A	2094.62	PASS	AC=1;AF=0.829;AN=2;DP=2539;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:990,0,1124:15,25,13,25
chr1	116948741	.	C	T	836.55	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.338;QD=13.49;ReadPosRankSum=-1.971;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:865,0,760:12,19,12,19
chr1	116952787	.	C	T	1747.1	PASS	AC=1;AF=0.6;AN=2;DP=654;FractionInformativeReads=1;MQ=60;set=variant6-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,60:141:99:1468,0,1964:37,44,23,37
chr1	117064744	.	T	C	66.46	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.825;QD=5.54;ReadPosRankSum=-0.536;SOR=0.551;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:95:95,0,279:2,6,1,3
chr1	117121865	.	G	A	412.2	PASS	AC=2;AF=0.632;AN=2;DP=359;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant10-variant11-variant13-filterInvariant18-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:650,54,0:0,0,15,3
chr1	117122130	.	T	C	1815.44	PASS	AC=1;AF=0.571;AN=2;DP=2458;MQ=60;set=variant5-variant9-variant11-variant12-variant16-variant19-variant21-variant22-variant29-variant30-variant31-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:85,78:163:99:2046,0,2348:51,34,41,37
chr1	117122285	.	G	GTCC	2244.53	PASS	AC=1;AF=0.575;AN=2;DP=5241;set=variant-variant3-variant4-variant5-variant10-variant11-variant17-variant18-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant34-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:138,74:212:99:2592,0,8462:75,63,41,33
chr1	117122288	.	G	C	2812.53	PASS	AC=1;AF=0.568;AN=2;DP=5712;set=variant-variant3-variant4-variant5-variant10-variant11-variant13-variant17-variant18-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant34-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:145,105:250:99:3802,0,8437:79,66,56,49
chr1	117131904	.	C	T	385.3	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=2.187;FractionInformativeReads=1;MQ=57.94;MQRankSum=-0.192;QD=15.41;ReadPosRankSum=-0.082;SOR=0.26;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:414,0,369:1,10,3,11
chr1	117142490	.	C	T	100.59	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=0;FractionInformativeReads=1;set=variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:99:132,0,492:10,2,4,0
chr1	117142497	.	C	T	97.59	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;set=variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,4:17:99:129,0,531:11,2,4,0
chr1	117142531	.	G	A	49.73	PASS	AC=1;AF=0.605;AN=2;DP=1252;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,9:40:99:282,0,1317:26,5,8,1
chr1	117142532	.	G	A	253.35	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=54.1;MQRankSum=2.189;QD=6.18;ReadPosRankSum=-0.079;SOR=0.657;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,9:41:99:282,0,1317:27,5,8,1
chr1	117142583	.	T	A	305.71	PASS	AC=1;AF=0.5;AN=2;DP=873;set=variant4-filterInvariant13-variant14-variant18-variant19-filterInvariant21-filterInvariant23-variant26-filterInvariant28-filterInvariant37-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,12:79:99:155,0,1858:41,26,10,2
chr1	117142613	.	C	T	268.02	PASS	AC=1;AF=0.5;AN=2;DP=4958;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,56:127:99:1312,0,1825:45,26,37,19
chr1	117142641	.	G	A	375.97	PASS	AC=1;AF=0.5;AN=2;DP=6944;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,74:172:99:1807,0,2531:59,39,49,25
chr1	117142700	.	C	A	572.75	PASS	AC=1;AF=0.5;AN=2;DP=10247;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:149,99:248:99:2286,0,3878:84,65,57,42
chr1	117142736	.	A	G	1359.71	PASS	AC=1;AF=0.5;AN=2;DP=12259;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:182,105:287:99:2214,0,4507:104,78,60,45
chr1	117142855	.	C	T	1729.59	PASS	AC=1;AF=0.5;AN=2;DP=12618;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:202,99:301:99:2127,0,5408:94,108,42,57
chr1	117142868	.	C	T	2622.4	PASS	AC=1;AF=0.5;AN=2;DP=11869;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:191,81:272:99:2882,0,9746:87,104,34,47
chr1	117142869	.	A	G	2622.4	PASS	AC=1;AF=0.5;AN=2;DP=11823;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:187,84:271:99:2882,0,9746:86,101,36,48
chr1	117142977	.	A	C,G	193.25	PASS	AC=0,1;AF=0.047,0.453;AN=2;DP=6731;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/2:142:99:40,64,11,27
chr1	117146504	.	G	A	495.41	PASS	AC=1;AF=0.5;AN=2;DP=18380;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:276,82:358:99:951,0,7192:146,130,41,41
chr1	117146563	.	G	A	1169.47	PASS	AC=1;AF=0.5;AN=2;DP=15374;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:230,75:305:99:2262,0,9333:102,128,35,40
chr1	117146571	.	A	G	1065.92	PASS	AC=1;AF=0.5;AN=2;DP=14109;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:213,68:281:99:2226,0,9027:91,122,31,37
chr1	117146592	.	C	G	342.92	PASS	AC=1;AF=0.5;AN=2;DP=10920;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:165,50:215:99:1661,0,7174:65,100,20,30
chr1	117150870	.	C	A	337.49	PASS	AC=1;AF=0.5;AN=2;DP=137;FS=0.786;FractionInformativeReads=1;MQ=55.5;MQRankSum=-3.979;QD=2.46;ReadPosRankSum=0.846;SOR=0.564;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:107,30:137:99:366,0,3043:43,64,13,17
chr1	117150928	.	C	T	515	PASS	AC=1;AF=0.5;AN=2;DP=3765;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,33:88:99:1214,0,2326:19,36,14,19
chr1	117150933	.	G	A	543.75	PASS	AC=1;AF=0.5;AN=2;DP=3567;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,33:84:99:1223,0,2262:16,35,14,19
chr1	117150966	.	G	T	192.93	PASS	AC=1;AF=0.5;AN=2;DP=2180;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:650,0,677:5,18,7,16
chr1	117150970	.	G	T	896.01	PASS	AC=1;AF=0.5;AN=2;DP=141;FractionInformativeReads=1;set=variant10-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,9:44:99:142,0,1435:9,26,2,7
chr1	117151062	.	C	T	37.69	PASS	AC=1;AF=0.5;AN=2;DP=216;FractionInformativeReads=1;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant23-variant25-variant26-variant27-variant29-variant31-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:119,0,485:2,7,1,3
chr1	117151066	.	G	A	37.69	PASS	AC=1;AF=0.5;AN=2;DP=201;FractionInformativeReads=1;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant23-variant25-variant26-variant27-variant29-variant31-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:125,0,420:2,5,1,3
chr1	117156326	.	C	T	220.39	PASS	AC=1;AF=0.5;AN=2;DP=3001;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant22-filterInvariant23-filterInvariant24-variant26-variant27-filterInvariant28-variant29-variant31-variant32-filterInvariant33-variant34-filterInvariant36-variant37-variant39-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,11:76:99:305,0,5675:39,26,8,3
chr1	117156333	.	T	C	290.13	PASS	AC=1;AF=0.5;AN=2;DP=3612;FractionInformativeReads=1;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant15-filterInvariant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-filterInvariant25-variant26-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-filterInvariant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,14:81:99:402,0,5798:39,28,10,4
chr1	117156340	.	C	T	350.62	PASS	AC=1;AF=0.5;AN=2;DP=3992;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant15-filterInvariant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-filterInvariant25-variant26-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-filterInvariant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,19:91:99:500,0,5835:41,31,13,6
chr1	117156459	.	C	T	608.98	PASS	AC=1;AF=0.5;AN=2;DP=7812;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,73:170:99:1392,0,2485:50,47,40,33
chr1	117156490	.	T	C	497.11	PASS	AC=1;AF=0.5;AN=2;DP=7424;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,72:166:99:1390,0,2405:53,41,37,35
chr1	117156584	.	T	C	424.83	PASS	AC=1;AF=0.5;AN=2;DP=6974;set=variant-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,42:163:99:1356,0,5970:62,59,13,29
chr1	117156585	.	G	A	424.83	PASS	AC=1;AF=0.5;AN=2;DP=6965;set=variant-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,42:164:99:1356,0,5970:62,60,13,29
chr1	117156600	.	T	C	60.03	PASS	AC=1;AF=0.5;AN=2;DP=5551;set=filterInvariant-variant3-filterInvariant4-filterInvariant5-filterInvariant7-variant8-variant9-variant11-variant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant22-variant23-filterInvariant24-variant26-filterInvariant27-variant28-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant34-variant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,37:158:99:532,0,3308:67,54,12,25
chr1	117158898	.	C	T	62.52	PASS	AC=1;AF=0.5;AN=2;DP=664;set=filterInvariant8-filterInvariant9-filterInvariant11-variant12-filterInvariant15-filterInvariant18-variant23-filterInvariant24-filterInvariant27-filterInvariant29-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,8:47:99:218,0,1543:15,24,4,4
chr1	117158909	.	C	T	100.49	PASS	AC=1;AF=0.5;AN=2;DP=696;set=filterInvariant8-variant9-filterInvariant11-variant12-filterInvariant15-filterInvariant17-variant18-variant23-filterInvariant24-filterInvariant27-filterInvariant29-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:34,8:42:99:273,0,1434:13,21,4,4
chr1	117158934	.	C	T	127.47	PASS	AC=1;AF=0.5;AN=2;DP=817;set=variant8-variant9-variant11-variant12-variant15-filterInvariant16-filterInvariant17-variant18-variant23-variant24-filterInvariant25-variant27-filterInvariant28-variant29-filterInvariant35-filterInvariant36-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:30,10:40:99:288,0,1218:12,18,5,5
chr1	117158972	.	A	G	34.92	PASS	AC=1;AF=0.5;AN=2;DP=817;set=filterInvariant-variant8-variant9-filterInvariant10-variant11-variant12-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant23-variant25-variant26-variant27-variant28-filterInvariant29-variant32-variant35-variant36-variant37-filterInvariant39-variant40-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:204,0,458:6,13,6,6
chr1	117159024	.	C	T	32.96	PASS	AC=1;AF=0.5;AN=2;DP=282;FractionInformativeReads=1;set=filterInvariant-variant8-variant9-variant11-filterInvariant18-variant23-variant24-filterInvariant25-variant26-variant27-variant28-filterInvariant29-variant35-variant36-variant37-filterInvariant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:88:145,0,88:0,4,3,4
chr1	117236970	.	G	C	973.78	PASS	AC=1;AF=0.671;AN=2;DP=2635;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,26:68:99:698,0,1321:11,31,7,19
chr1	117297784	.	A	G	721.35	PASS	AC=1;AF=0.64;AN=2;DP=684;MQ=60;set=variant-variant7-variant8-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,25:34:99:943,0,261:0,9,1,24
chr1	117311147	.	C	A	2044.64	PASS	AC=1;AF=0.545;AN=2;DP=1900;MQ=60;set=variant5-variant6-variant14-variant18-variant21-variant29-variant32-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,75:161:99:1864,0,2088:51,35,45,30
chr1	117487710	.	A	G	5540.81	PASS	AC=2;AF=0.909;AN=2;DP=6239;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,135:137:99:5941,313,0:1,1,50,85
chr1	117487711	.	T	A	5540.81	PASS	AC=2;AF=0.909;AN=2;DP=6178;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,135:137:99:5941,313,0:1,1,50,85
chr1	117487884	.	G	A	838.55	PASS	AC=2;AF=0.756;AN=2;DP=798;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:638,54,0:0,0,4,14
chr1	117554421	.	A	G	1499	PASS	AC=1;AF=0.548;AN=2;DP=2290;MQ=60;set=variant5-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant25-variant28-variant29-variant30-variant32-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,64:120:99:1592,0,1452:27,29,31,33
chr1	117555898	.	G	A	862.71	PASS	AC=2;AF=1;AN=2;DP=1128;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:854,72,0:0,0,19,5
chr1	117559726	.	A	G	3791.22	PASS	AC=2;AF=0.989;AN=2;DP=5403;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,127:128:99:4078,373,0:0,1,66,61
chr1	117602960	.	C	A	8260.14	PASS	AC=1;AF=0.881;AN=2;DP=10195;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,132:249:99:3139,0,2734:65,52,77,55
chr1	117618722	.	T	C	1140.06	PASS	AC=2;AF=1;AN=2;DP=1148;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:804,66,0:0,0,16,6
chr1	117621947	.	G	C	203.05	PASS	AC=1;AF=0.587;AN=2;DP=303;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant29-variant30-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,241:6,2,3,0
chr1	117628869	.	ATG	ATGTG,A,ATGTGTG	282.52	PASS	AC=1,0,0;AF=0.35,0.15,0.025;AN=2;DP=238;set=variant-variant2-variant3-variant4-variant8-variant13-variant14-variant15-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant35-variant37-variant39-variant41-variant44	GT:DP:GQ:SB	0/1:11:1:1,0,9,1
chr1	117631391	.	T	C	2219.07	PASS	AC=1;AF=0.907;AN=2;DP=2436;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,15:40:99:390,0,656:17,8,9,6
chr1	117633366	.	T	C	192.92	PASS	AC=1;AF=0.577;AN=2;DP=117;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant13-variant15-variant16-variant19-variant29-variant30-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:138,0,189:1,4,0,4
chr1	117639828	.	TA	T	106.29	PASS	AC=1;AF=0.583;AN=2;DP=369;MQ=60;set=variant2-variant3-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant28-variant29-variant30-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:159,0,317:11,3,7,1
chr1	117644937	.	TCCCTGCAGCCA	T	1487.4	PASS	AC=1;AF=0.56;AN=2;DP=2522;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant20-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,51:87:99:2002,0,3849:20,16,21,30
chr1	117654777	.	ATAAC	A	106.67	PASS	AC=1;AF=0.568;AN=2;DP=375;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant13-variant15-variant16-variant17-variant20-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:321,0,277:2,3,5,3
chr1	117656088	.	A	G	1404.54	PASS	AC=1;AF=0.552;AN=2;DP=3702;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant24-variant25-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,73:166:99:1636,0,2332:45,48,38,35
chr1	117656276	.	A	G	285.79	PASS	AC=1;AF=0.552;AN=2;DP=626;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant24-variant25-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:249,0,251:0,7,1,7
chr1	117660608	.	C	T	862.64	PASS	AC=1;AF=0.905;AN=2;DP=1083;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,19:26:99:556,0,201:6,1,13,6
chr1	117660754	.	C	T	1415.34	PASS	AC=1;AF=0.563;AN=2;DP=2997;MQ=60;set=variant2-variant3-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant20-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,78:145:99:2148,0,1607:36,31,50,28
chr1	117663913	.	C	T	1508.46	PASS	AC=1;AF=0.744;AN=2;DP=2669;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:965,0,1138:25,16,19,18
chr1	117664046	.	C	T	2059.09	PASS	AC=1;AF=0.744;AN=2;DP=4400;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,64:115:99:1396,0,1274:24,27,32,32
chr1	117686492	.	C	A	155.91	PASS	AC=1;AF=0.786;AN=2;DP=834;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:288,0,438:3,10,2,8
chr1	117686827	.	C	T	670.3	PASS	AC=1;AF=0.786;AN=2;DP=3343;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,32:66:99:821,0,902:20,14,19,13
chr1	117686914	.	C	T	894.97	PASS	AC=1;AF=0.786;AN=2;DP=4459;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,60:102:99:1509,0,1082:22,20,28,32
chr1	117687125	.	A	T	1650.93	PASS	AC=1;AF=0.786;AN=2;DP=6096;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,83:153:99:2095,0,1697:40,30,48,35
chr1	117690272	.	G	A	558.31	PASS	AC=2;AF=0.864;AN=2;DP=3044;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,64:65:99:1926,184,0:0,1,35,29
chr1	117696083	.	ATT	A,AT	336.36	PASS	AC=0,1;AF=0.097,0.403;AN=2;DP=2941;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:54:83:6,6,19,23
chr1	117715200	.	ATTT	A	265.65	PASS	AC=1;AF=0.5;AN=2;DP=110;MQ=60;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,34:42:99:1384,0,290:3,5,12,22
chr1	117715987	.	AACAC	AACACACAC,AACACAC,A,AACACACACAC,AACACACACACACAC	523.65	PASS	AC=0,0,0,0,1;AF=0.171,0.524,0.012,0.012,0.012;AN=2;DP=1112;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/5:14:99:4,6,1,3
chr1	117910682	.	G	A	6198.16	PASS	AC=2;AF=0.86;AN=2;DP=6810;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4515,432,0:0,0,83,61
chr1	117944732	.	C	A	71.17	PASS	AC=1;AF=0.545;AN=2;DP=149;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant24-variant25-variant32-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:219,0,243:7,0,5,3
chr1	117957288	.	A	G	787.57	PASS	AC=2;AF=0.86;AN=2;DP=721;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:557,39,0:0,0,13,0
chr1	117957505	.	A	G	664.95	PASS	AC=1;AF=0.5;AN=2;DP=1326;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant17-variant19-variant23-variant27-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:766,0,734:8,21,15,19
chr1	117985030	.	AT	A	153.2	PASS	AC=1;AF=0.5;AN=2;DP=275;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant17-variant19-variant23-variant27-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:122,0,310:2,10,3,3
chr1	118057278	.	C	T	234.71	PASS	AC=1;AF=0.5;AN=2;DP=248;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant17-variant19-variant23-variant27-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:346,0,167:4,1,9,2
chr1	118058319	.	T	C	1051.34	PASS	AC=1;AF=0.5;AN=2;DP=1248;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant17-variant19-variant23-variant27-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,35:70:99:1064,0,1107:16,19,16,19
chr1	118065841	.	A	G	3098.21	PASS	AC=1;AF=0.614;AN=2;DP=5402;MQ=60;set=variant-variant4-variant6-variant8-variant12-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:143,119:262:99:2992,0,3583:62,81,53,66
chr1	118068558	.	G	A	5610.09	PASS	AC=1;AF=0.536;AN=2;DP=2768;MQ=60;set=variant8-variant12-variant14-variant15-variant18-variant22-variant25-variant26-variant28-variant29-variant33-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:90,91:181:99:2209,0,2291:50,40,48,43
chr1	118068699	.	C	G	3253.99	PASS	AC=1;AF=0.614;AN=2;DP=5651;MQ=60;set=variant-variant4-variant6-variant8-variant12-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:120,98:218:99:2246,0,3061:63,57,50,48
chr1	118068934	.	G	A	4634.41	PASS	AC=2;AF=0.688;AN=2;DP=4891;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:3058,276,0:0,0,25,67
chr1	118069063	.	G	A	192.99	PASS	AC=2;AF=0.925;AN=2;DP=354;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:267,18,0:0,0,2,4
chr1	118069696	.	T	C	4893.76	PASS	AC=1;AF=0.614;AN=2;DP=8251;set=variant-variant4-variant6-variant8-variant12-variant14-variant15-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:153,180:333:99:4820,0,3765:97,56,122,58
chr1	118069830	.	A	G	6831.49	PASS	AC=1;AF=0.5;AN=2;DP=8499;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant17-variant19-variant23-variant27-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:247,181:428:99:4055,0,6365:102,145,79,102
chr1	118148830	.	G	T	271.65	PASS	AC=2;AF=0.712;AN=2;DP=888;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1056,107,0:0,0,12,24
chr1	118165328	.	T	C	275.33	PASS	AC=1;AF=0.595;AN=2;DP=856;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant11-variant16-variant21-variant23-variant24-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,25:41:99:841,0,564:15,1,23,2
chr1	118165973	.	C	T	1374.25	PASS	AC=2;AF=0.619;AN=2;DP=3094;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant11-variant16-variant21-variant23-variant24-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,140:141:99:4309,413,0:1,0,67,73
chr1	118166096	.	C	T	2339.18	PASS	AC=1;AF=0.5;AN=2;DP=3743;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant16-variant21-variant23-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,97:188:99:2378,0,2201:50,41,51,46
chr1	118166750	.	A	G	244.48	PASS	AC=2;AF=0.625;AN=2;DP=805;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant16-variant21-variant23-variant24-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1539,135,0:0,0,16,29
chr1	118166786	.	CT	C,CTT,CTTT,CTTTT	187.2	PASS	AC=0,1,0,0;AF=0.12,0.28,0.08,0.02;AN=2;DP=954;set=variant2-filterInvariant3-variant4-variant6-variant7-filterInvariant8-variant11-variant12-variant14-variant18-variant19-variant20-variant23-variant26-filterInvariant27-variant31-variant33-variant35-variant36-filterInvariant38-filterInvariant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:20:99:3,9,5,3
chr1	118166853	.	C	A	323.7	PASS	AC=1;AF=0.5;AN=2;DP=86;FractionInformativeReads=1;MQ=60;set=variant13-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:222,0,439:6,8,4,4
chr1	118167199	.	A	G	2891	PASS	AC=1;AF=0.579;AN=2;DP=4338;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant19-variant20-variant23-variant26-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,101:229:99:2481,0,3257:71,57,59,42
chr1	118167653	.	C	T	444.1	PASS	AC=1;AF=0.5;AN=2;DP=347;MQ=60;set=variant10-variant11-variant13-variant24-variant26-variant27-variant31-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,10:31:99:195,0,562:12,9,4,6
chr1	118167727	.	G	GT	215.43	PASS	AC=1;AF=0.5;AN=2;DP=76;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,10:34:99:162,0,534:12,12,9,1
chr1	118168826	.	C	T	319.75	PASS	AC=1;AF=0.5;AN=2;DP=700;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant16-variant21-variant23-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:271,0,561:13,5,6,6
chr1	118320859	.	T	A	611.96	PASS	AC=2;AF=1;AN=2;DP=1028;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:589,60,0:0,0,11,9
chr1	118321119	.	T	C	2239.02	PASS	AC=2;AF=0.919;AN=2;DP=2388;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1571,162,0:0,0,28,26
chr1	118429438	.	G	GACA	241.83	PASS	AC=1;AF=0.593;AN=2;DP=290;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:105,0,335:0,7,0,3
chr1	118461271	.	A	G	2072.37	PASS	AC=1;AF=0.5;AN=2;DP=163;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.065;QD=12.71;ReadPosRankSum=-2.109;SOR=0.743;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:75,88:163:99:2101,0,1731:40,35,48,40
chr1	118484265	.	G	A	2108.48	PASS	AC=2;AF=1;AN=2;DP=3076;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1998,189,0:0,0,31,32
chr1	118491215	.	GT	GTT,G	67.58	PASS	AC=1,0;AF=0.5,0.026;AN=2;DP=347;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant12-variant14-variant15-filterInvariant16-variant19-variant22-variant24-variant25-variant31-variant33-variant37-variant41-variant43	GT:DP:GQ:SB	0/1:10:92:0,5,0,5
chr1	118492527	.	G	A	2107.53	PASS	AC=1;AF=0.5;AN=2;DP=600;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,45:93:99:1195,0,1212:24,24,17,28
chr1	118502725	.	A	G	506.29	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=1.316;FractionInformativeReads=0.974;MQ=59.83;MQRankSum=0.874;QD=13.32;ReadPosRankSum=-0.659;SOR=0.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,21:37:99:535,0,417:5,11,8,13
chr1	118502732	.	CGTGTGTGT	CGTGT,CGTGTGT,CGTGTGTGTGTGT,CGTGTGTGTGT,CGT,C	705.63	PASS	AC=0,0,2,0,0,0;AF=0.317,0.037,0.183,0.244,0.049,0.012;AN=2;DP=1464;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/3:11:32:0,0,2,9
chr1	118507893	.	T	C	2940.71	PASS	AC=1;AF=0.569;AN=2;DP=7650;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,90:170:99:2433,0,2042:39,41,44,46
chr1	118526592	.	G	A	761.44	PASS	AC=2;AF=0.929;AN=2;DP=814;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:670,54,0:0,0,2,16
chr1	118550569	.	G	A	598.2	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=1.341;FractionInformativeReads=1;MQ=60;MQRankSum=-0.205;QD=11.96;ReadPosRankSum=-1.808;SOR=1.068;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:626,0,862:21,7,18,4
chr1	118579170	.	T	TTGTA	52.73	PASS	AC=1;AF=0.917;AN=2;DP=15;FS=0;MQ=60;MQRankSum=0.727;ReadPosRankSum=0.727;set=variant3-variant4-variant5-variant12-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:33:123,0,33:1,0,1,2
chr1	118579224	.	G	GAC	67.13	PASS	AC=1;AF=0.56;AN=2;DP=221;MQ=60;set=variant-variant5-variant7-variant9-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:227,0,164:4,2,5,3
chr1	118617274	.	C	T	1496.74	PASS	AC=1;AF=0.597;AN=2;DP=5134;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,74:143:99:1725,0,1497:30,39,30,44
chr1	118623681	.	TACACAC	T,TAC,TACACACAC	590.68	PASS	AC=1,0,0;AF=0.525,0.088,0.075;AN=2;DP=762;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:19:99:9,3,6,1
chr1	118644430	.	A	G	1206.57	PASS	AC=1;AF=0.645;AN=2;DP=3190;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,40:99:99:794,0,1650:37,22,24,16
chr1	118693289	.	C	T	273.06	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.655;QD=10.11;ReadPosRankSum=-2.499;SOR=0.836;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:301,0,340:7,7,6,7
chr1	119425740	.	C	A	3761.11	PASS	AC=1;AF=0.5;AN=2;DP=367;FS=1.237;FractionInformativeReads=1;MQ=60;MQRankSum=1.175;QD=10.25;ReadPosRankSum=-0.856;SOR=0.628;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:207,160:367:99:3789,0,5019:116,91,87,73
chr1	119427228	.	GAA	GA,G,GAAA	508.6	PASS	AC=0,0,1;AF=0.419,0.054,0.041;AN=2;DP=6389;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant8-variant9-filterInvariant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-filterInvariant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-filterInvariant36-variant38-variant39-filterInvariant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/3:109:99:30,32,25,22
chr1	119427687	.	G	C	1654.05	PASS	AC=1;AF=0.5;AN=2;DP=137;FS=3.113;FractionInformativeReads=0.985;MQ=60;MQRankSum=-0.818;QD=12.07;ReadPosRankSum=-4.144;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,63:135:99:1682,0,1910:35,37,26,37
chr1	119428315	.	T	C	394.45	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=1.607;FractionInformativeReads=1;MQ=60;MQRankSum=0.753;QD=13.15;ReadPosRankSum=0.711;SOR=0.328;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:423,0,367:3,10,6,11
chr1	119428336	.	T	TCA	245.86	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=0.864;MQ=60;MQRankSum=-0.122;QD=11.18;ReadPosRankSum=0.531;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:283,0,261:2,7,2,8
chr1	119433518	.	G	A	982.13	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=1.027;FractionInformativeReads=1;MQ=60;MQRankSum=-0.886;QD=16.65;ReadPosRankSum=-1.058;SOR=0.556;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,37:59:99:1010,0,534:8,14,15,22
chr1	119442025	.	C	A	44.17	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.72;QD=7.36;ReadPosRankSum=0;SOR=0.307;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,129:0,4,0,2
chr1	119456589	.	C	T	219.05	PASS	AC=1;AF=0.5;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant2-variant15-variant17-variant25-variant28-variant35-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:396,0,217:6,3,10,4
chr1	119466275	.	A	G	1502.29	PASS	AC=2;AF=0.738;AN=2;DP=2016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1466,132,0:0,0,15,29
chr1	119531871	.	C	A	125.25	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,166:4,1,1,1
chr1	119574074	.	G	C	2435.36	PASS	AC=1;AF=0.726;AN=2;DP=6091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,94:166:99:2744,0,1985:35,37,51,43
chr1	119574587	.	C	T	3279.49	PASS	AC=1;AF=0.671;AN=2;DP=8861;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,86:211:99:2284,0,3125:70,55,57,29
chr1	119923241	.	C	T	557.86	PASS	AC=1;AF=0.5;AN=2;DP=97;FractionInformativeReads=1;MQ=60;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:981,0,1678:15,15,15,9
chr1	119923263	.	G	A	591.39	PASS	AC=1;AF=0.5;AN=2;DP=116;FractionInformativeReads=1;MQ=60;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,31:67:99:1109,0,1788:19,17,18,13
chr1	119923432	.	T	C	1711.03	PASS	AC=1;AF=0.5;AN=2;DP=240;FractionInformativeReads=1;MQ=60;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,58:112:99:1544,0,1290:26,28,29,29
chr1	119923531	.	A	C	750.39	PASS	AC=1;AF=0.697;AN=2;DP=2620;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,33:72:99:905,0,992:14,25,12,21
chr1	119923724	.	T	C,G	1068.53	PASS	AC=0,1;AF=0.603,0.034;AN=2;DP=3979;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:145:99:40,32,42,31
chr1	119923751	.	G	A	1517.48	PASS	AC=1;AF=0.5;AN=2;DP=276;FractionInformativeReads=1;MQ=60;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,74:146:99:1846,0,1627:36,36,40,34
chr1	119927680	.	A	G	1360.93	PASS	AC=1;AF=0.697;AN=2;DP=4340;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,66:139:99:1752,0,1990:32,41,24,42
chr1	119935061	.	T	C	171.46	PASS	AC=1;AF=0.5;AN=2;DP=82;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant13-variant29-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:94:94,0,330:0,8,1,3
chr1	119935507	.	A	T	292.42	PASS	AC=1;AF=0.7;AN=2;DP=391;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant21-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:358,0,269:0,7,1,9
chr1	119936263	.	G	A	783.27	PASS	AC=1;AF=0.638;AN=2;DP=1584;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant21-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:901,0,686:18,6,21,9
chr1	119936531	.	T	C	931.95	PASS	AC=1;AF=0.5;AN=2;DP=147;MQ=60;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,30:51:99:784,0,544:8,13,13,17
chr1	119965519	.	C	T	2730.49	PASS	AC=1;AF=0.5;AN=2;DP=4213;set=variant-variant2-variant3-variant5-variant10-variant13-variant23-variant29-variant34-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:138,115:253:99:2824,0,3470:74,64,65,50
chr1	119965564	.	C	G	3401.32	PASS	AC=1;AF=0.5;AN=2;DP=3459;MQ=60;set=variant-variant2-variant3-variant5-variant10-variant13-variant29-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:155,139:294:99:3253,0,3822:76,79,68,71
chr1	120049735	.	T	C	196.65	PASS	AC=1;AF=0.5;AN=2;DP=50;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,3:14:80:80,0,369:9,2,2,1
chr1	120054208	.	C	T	2837.66	PASS	AC=1;AF=0.5;AN=2;DP=433;FractionInformativeReads=1;set=variant10-variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,83:146:99:3264,0,3122:35,28,49,34
chr1	120054215	.	A	G	2796.54	PASS	AC=1;AF=0.5;AN=2;DP=667;FractionInformativeReads=1;set=variant10-variant11-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,88:161:99:3364,0,3333:42,31,51,37
chr1	120054250	.	T	A	2782.35	PASS	AC=1;AF=0.5;AN=2;DP=576;set=variant10-variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:90,97:187:99:2490,0,2065:51,39,53,44
chr1	120056255	.	A	G	486.25	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.183;QD=13.89;ReadPosRankSum=-2.25;SOR=0.434;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:514,0,691:18,2,13,2
chr1	120057002	.	T	C	3467.17	PASS	AC=1;AF=0.5;AN=2;DP=1361;set=variant10-variant11-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:176,152:328:99:3670,0,4245:103,73,91,61
chr1	120057085	.	G	A	4747.64	PASS	AC=1;AF=0.5;AN=2;DP=431;FS=0;FractionInformativeReads=0.995;MQ=60;MQRankSum=1.16;QD=11.02;ReadPosRankSum=1.475;SOR=0.703;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:219,210:429:99:4776,0,5309:109,110,106,104
chr1	120057246	.	C	A	2277.89	PASS	AC=2;AF=0.714;AN=2;DP=2465;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2642,203,0:0,0,8,60
chr1	120162152	.	A	T	16386.7	PASS	AC=2;AF=0.703;AN=2;DP=18200;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,467:467:99:14186,1399,0:0,0,246,221
chr1	120162442	.	T	C	7137.37	PASS	AC=2;AF=0.703;AN=2;DP=6473;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:5827,563,0:0,0,77,111
chr1	120162636	.	GAAAC	G	15871	PASS	AC=2;AF=0.703;AN=2;DP=12390;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,327:327:99:14586,985,0:0,0,197,130
chr1	120162787	.	T	C	19730.7	PASS	AC=2;AF=0.703;AN=2;DP=19124;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,512:512:99:16137,1532,0:0,0,262,250
chr1	120163247	.	T	C	12081.5	PASS	AC=2;AF=0.703;AN=2;DP=9236;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,255:255:99:11449,774,0:0,0,141,114
chr1	120163248	.	G	A	12081.5	PASS	AC=2;AF=0.703;AN=2;DP=9283;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,253:253:99:11449,774,0:0,0,140,113
chr1	120163506	.	CT	C	18094	PASS	AC=2;AF=0.703;AN=2;DP=19999;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,489:489:99:15118,1471,0:0,0,239,250
chr1	120163531	.	T	C	18027.2	PASS	AC=2;AF=0.703;AN=2;DP=19522;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,513:513:99:15508,1534,0:0,0,246,267
chr1	120163831	.	A	G	5826.85	PASS	AC=2;AF=0.703;AN=2;DP=5700;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:5040,474,0:0,0,76,82
chr1	120164252	.	G	A	3284.91	PASS	AC=2;AF=0.703;AN=2;DP=2961;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3283,264,0:0,0,20,68
chr1	120164303	.	C	T	651.39	PASS	AC=2;AF=0.543;AN=2;DP=1074;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant17-variant21-variant22-variant25-variant28-variant29-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1614,129,0:0,0,13,30
chr1	120164544	.	A	AG	47.32	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=34;FS=38.32;FractionInformativeReads=1;MQ=60;MQRankSum=0.98;QD=1.39;ReadPosRankSum=-2.513;SOR=4.16;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:27,7:34:85:85,0,659:22,5,0,7
chr1	120164545	.	T	G,TG	1104.4	PASS	AC=1,1;AF=0.25,0.75;AN=2;DP=70;FS=0;MQ=60;set=variant41-variant44	GT:DP:GQ:SB	1/2:35:85:0,0,22,13
chr1	120164738	.	C	T	1184.56	PASS	AC=2;AF=0.703;AN=2;DP=1863;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1474,132,0:0,0,24,20
chr1	120164966	.	C	T	1620.16	PASS	AC=2;AF=0.703;AN=2;DP=2803;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3172,298,0:0,0,54,46
chr1	120165030	.	T	TTCCTCAAGG	2874.57	PASS	AC=2;AF=0.703;AN=2;DP=3438;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:4455,307,0:0,0,48,48
chr1	120165040	.	T	C	2785.81	PASS	AC=2;AF=0.703;AN=2;DP=3581;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:4306,297,0:0,0,47,51
chr1	120165125	.	G	A	2672.06	PASS	AC=1;AF=0.655;AN=2;DP=3569;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,61:97:99:1691,0,805:20,16,28,33
chr1	120165135	.	G	T	2515.25	PASS	AC=2;AF=0.703;AN=2;DP=4629;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3729,291,0:0,0,51,45
chr1	120165187	.	G	A	1680.07	PASS	AC=2;AF=0.703;AN=2;DP=4989;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3606,360,0:0,0,67,54
chr1	120165826	.	C	T	5913.02	PASS	AC=2;AF=0.703;AN=2;DP=15632;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,389:389:99:11527,1159,0:0,0,164,225
chr1	120166681	.	G	A	1099.83	PASS	AC=2;AF=0.618;AN=2;DP=5780;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:4994,523,0:0,0,87,88
chr1	120166934	.	T	C	238.54	PASS	AC=2;AF=0.708;AN=2;DP=350;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:264,24,0:0,0,3,5
chr1	120254545	.	G	C	720.98	PASS	AC=1;AF=0.705;AN=2;DP=3154;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,29:67:99:727,0,971:25,13,18,11
chr1	120265926	.	G	A	158.4	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=4.26;FractionInformativeReads=1;MQ=60;MQRankSum=0.684;QD=19.8;ReadPosRankSum=-0.684;SOR=2.833;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:71:187,0,71:2,1,5,0
chr1	120266161	.	G	A	1045.55	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.444;QD=11.62;ReadPosRankSum=2.488;SOR=0.675;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,47:90:99:1074,0,995:19,24,21,26
chr1	120267282	.	AT	ATT,ATTT,A	43.21	PASS	AC=0,0,1;AF=0.15,0.2,0.175;AN=2;DP=257;set=variant3-variant4-variant5-variant10-variant11-variant13-variant14-variant17-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant33-filterInvariant35-variant41-variant43-variant44	GT:DP:GQ:SB	0/3:8:68:3,1,4,0
chr1	120267505	.	C	G	1559.47	PASS	AC=1;AF=0.589;AN=2;DP=3418;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant25-variant26-variant27-variant28-variant30-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,82:140:99:1936,0,1290:29,29,39,43
chr1	120267597	.	GC	G	1097.51	PASS	AC=2;AF=0.589;AN=2;DP=1667;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant25-variant26-variant27-variant28-variant30-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2431,196,0:0,0,24,41
chr1	120277194	.	TTAA	T	806.5	PASS	AC=1;AF=0.5;AN=2;DP=387;MQ=60;set=variant-variant8-variant19-variant28-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,27:62:99:1019,0,1627:22,13,17,10
chr1	120285546	.	G	A	2743.54	PASS	AC=2;AF=0.845;AN=2;DP=4529;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3013,293,0:0,0,58,40
chr1	120286863	.	A	G	1084.03	PASS	AC=1;AF=0.5;AN=2;DP=572;MQ=60;set=variant-variant8-variant19-variant28-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,35:77:99:941,0,1038:15,27,11,24
chr1	120286941	.	G	A,C	509.8	PASS	AC=0,1;AF=0.24,0.3;AN=2;DP=562;MQ=60;set=variant3-variant5-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:14:99:0,7,1,6
chr1	120293352	.	T	C	1211.67	PASS	AC=1;AF=0.526;AN=2;DP=2057;MQ=60;set=variant2-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,46:93:99:1081,0,1232:31,16,29,17
chr1	120293367	.	T	C	3991.38	PASS	AC=2;AF=0.833;AN=2;DP=5835;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,109:110:99:3180,282,0:1,0,68,41
chr1	120293568	.	G	A	807.42	PASS	AC=1;AF=0.526;AN=2;DP=1259;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,24:57:99:541,0,1038:9,24,10,14
chr1	120293748	.	T	G	295.68	PASS	AC=2;AF=0.872;AN=2;DP=516;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:282,27,0:0,0,3,6
chr1	120296033	.	AACAC	A,AACACAC,AAC,AACACACAC	98.57	PASS	AC=0,0,2,0;AF=0.107,0.196,0.482,0.018;AN=2;DP=380;FS=0;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant44	GT:DP:GQ:SB	3/3:7:21:0,0,1,6
chr1	120302419	.	A	G	741.32	PASS	AC=1;AF=0.5;AN=2;DP=847;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant19-variant21-variant28-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,52:104:99:1377,0,1335:29,23,33,19
chr1	120336785	.	C	T	2189.46	PASS	AC=2;AF=0.786;AN=2;DP=3284;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2919,281,0:0,0,51,43
chr1	120341236	.	A	C	1703.8	PASS	AC=1;AF=0.5;AN=2;DP=128;FS=2.365;FractionInformativeReads=1;MQ=60;MQRankSum=-1.067;QD=13.31;ReadPosRankSum=-0.217;SOR=0.5;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,68:128:99:1732,0,1599:19,41,25,43
chr1	120343744	.	C	A	418.58	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.333;QD=16.74;ReadPosRankSum=1.605;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:447,0,455:12,1,12,0
chr1	120344044	.	G	A	1105.29	PASS	AC=1;AF=0.648;AN=2;DP=2783;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,56:95:99:1492,0,1035:18,21,22,34
chr1	120344105	.	G	A	963.22	PASS	AC=1;AF=0.757;AN=2;DP=3027;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,40:75:99:1064,0,921:19,16,15,25
chr1	120344134	.	T	C	821.04	PASS	AC=1;AF=0.757;AN=2;DP=2835;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,39:74:99:1015,0,807:18,17,15,24
chr1	120344146	.	A	G	684.73	PASS	AC=1;AF=0.757;AN=2;DP=2750;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,38:81:99:999,0,958:22,21,15,23
chr1	120344239	.	T	A	328.51	PASS	AC=1;AF=0.654;AN=2;DP=1759;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,26:67:99:580,0,1052:16,25,14,12
chr1	120344415	.	C	G	587.26	PASS	AC=1;AF=0.667;AN=2;DP=1585;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,42:70:99:1100,0,668:14,14,23,19
chr1	120344716	.	G	A	472.42	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=3.084;FractionInformativeReads=1;MQ=60;MQRankSum=-0.25;QD=13.5;ReadPosRankSum=-1.45;SOR=0.26;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:501,0,414:5,10,10,10
chr1	120344936	.	G	C	228.83	PASS	AC=1;AF=0.757;AN=2;DP=1627;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:500,0,700:12,12,12,4
chr1	120378678	.	C	T	3315.95	PASS	AC=1;AF=0.784;AN=2;DP=5623;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,61:108:99:1428,0,1216:29,18,33,28
chr1	120380008	.	T	A	1340.87	PASS	AC=1;AF=0.784;AN=2;DP=2229;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:488,0,561:8,13,10,10
chr1	120384205	.	A	G	1874.33	PASS	AC=1;AF=0.795;AN=2;DP=5089;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1185,0,1508:22,32,20,27
chr1	120387120	.	G	A	2242.92	PASS	AC=1;AF=0.658;AN=2;DP=2724;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,34:76:99:997,0,1043:16,26,8,26
chr1	120390071	.	T	C	717.87	PASS	AC=1;AF=0.818;AN=2;DP=947;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:256,0,162:4,4,4,7
chr1	120437718	.	G	A	2072.63	PASS	AC=1;AF=0.5;AN=2;DP=2983;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,92:174:99:2381,0,2125:36,46,45,47
chr1	120455095	.	T	C	3944.4	PASS	AC=1;AF=0.5;AN=2;DP=921;FractionInformativeReads=1;MQ=60;set=variant2-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:128,138:266:99:3499,0,3431:55,73,74,64
chr1	120455441	.	A	G	2314.6	PASS	AC=1;AF=0.5;AN=2;DP=3858;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:98,92:190:99:2301,0,2581:41,57,37,55
chr1	120456392	.	T	TCTA	345.53	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=0;MQ=60;set=variant2-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,21:53:99:754,0,1434:16,16,11,10
chr1	120457501	.	C	T	486.51	PASS	AC=1;AF=0.5;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant2-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:602,0,656:12,11,14,9
chr1	120461033	.	G	A	115.13	PASS	AC=1;AF=0.5;AN=2;DP=902;FractionInformativeReads=1;MQ=60;set=filterInvariant-variant3-filterInvariant4-filterInvariant5-variant7-filterInvariant10-filterInvariant12-variant16-variant30-variant33-filterInvariant37-variant38-variant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:57,7:64:99:122,0,2548:41,16,1,6
chr1	120461036	.	A	G	109.13	PASS	AC=1;AF=0.5;AN=2;DP=891;FractionInformativeReads=1;MQ=60;set=filterInvariant-variant3-filterInvariant4-filterInvariant5-variant7-filterInvariant10-variant16-variant30-variant33-filterInvariant37-variant38-variant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:59,7:66:99:116,0,2604:42,17,1,6
chr1	120461054	.	C	T	63.92	PASS	AC=1;AF=0.5;AN=2;DP=1309;FractionInformativeReads=1;MQ=60;set=filterInvariant-variant3-filterInvariant4-variant5-filterInvariant6-filterInvariant10-variant16-filterInvariant21-variant30-filterInvariant31-variant33-filterInvariant37-variant38-variant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:76,7:83:59:59,0,3419:50,26,1,6
chr1	120461944	.	A	G	97.98	PASS	AC=1;AF=0.5;AN=2;DP=425;FractionInformativeReads=1;MQ=60;set=filterInvariant11-variant12-filterInvariant15-variant22-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,14:58:99:335,0,1320:33,11,7,7
chr1	120461956	.	A	T	154.32	PASS	AC=1;AF=0.5;AN=2;DP=1821;FractionInformativeReads=1;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,17:63:99:686,0,2470:35,11,7,10
chr1	120461959	.	T	G	232.28	PASS	AC=1;AF=0.5;AN=2;DP=1900;FractionInformativeReads=1;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,20:71:99:680,0,2554:37,14,10,10
chr1	120461962	.	C	A	313.25	PASS	AC=1;AF=0.5;AN=2;DP=1972;FractionInformativeReads=1;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,20:71:99:683,0,2512:36,15,10,10
chr1	120461965	.	T	A	310.24	PASS	AC=1;AF=0.5;AN=2;DP=2026;FractionInformativeReads=1;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,20:71:99:686,0,2470:36,15,10,10
chr1	120461974	.	G	A	304.22	PASS	AC=1;AF=0.5;AN=2;DP=2215;FractionInformativeReads=1;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,22:81:99:740,0,2884:42,17,11,11
chr1	120461977	.	T	A	336.43	PASS	AC=1;AF=0.5;AN=2;DP=2268;FractionInformativeReads=1;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,23:84:99:812,0,2949:43,18,12,11
chr1	120461980	.	A	G	368.49	PASS	AC=1;AF=0.5;AN=2;DP=2308;set=variant-variant5-variant8-variant11-variant12-variant15-variant17-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,24:90:99:806,0,2990:46,20,13,11
chr1	120462019	.	T	A	522.09	PASS	AC=1;AF=0.5;AN=2;DP=6309;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,51:144:99:1084,0,2473:52,41,25,26
chr1	120462031	.	A	G	1125.65	PASS	AC=1;AF=0.5;AN=2;DP=6615;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:98,51:149:99:1881,0,4401:55,43,26,25
chr1	120462034	.	C	T	1119.64	PASS	AC=1;AF=0.5;AN=2;DP=6660;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:100,52:152:99:1968,0,4389:56,44,27,25
chr1	120462040	.	A	G	1117.09	PASS	AC=1;AF=0.5;AN=2;DP=6700;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:102,58:160:99:1993,0,4420:56,46,28,30
chr1	120462058	.	G	A	556.42	PASS	AC=1;AF=0.5;AN=2;DP=6699;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:98,54:152:99:1051,0,2580:52,46,26,28
chr1	120462093	.	G	T	1081.26	PASS	AC=1;AF=0.5;AN=2;DP=6070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:105,46:151:99:1612,0,4595:51,54,17,29
chr1	120462094	.	G	A	1165.24	PASS	AC=1;AF=0.5;AN=2;DP=6021;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:104,46:150:99:1612,0,4595:50,54,17,29
chr1	120462103	.	G	T	1125.65	PASS	AC=1;AF=0.5;AN=2;DP=5822;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:99,45:144:99:1586,0,4391:47,52,17,28
chr1	120462109	.	G	A	1131.67	PASS	AC=1;AF=0.5;AN=2;DP=5689;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:94,42:136:99:1550,0,4310:45,49,15,27
chr1	120462118	.	A	G	972.74	PASS	AC=1;AF=0.5;AN=2;DP=5471;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:94,37:131:99:1340,0,4325:46,48,14,23
chr1	120462136	.	T	C	897.79	PASS	AC=1;AF=0.5;AN=2;DP=5089;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:84,31:115:99:1082,0,3842:39,45,9,22
chr1	120462148	.	A	G	639.83	PASS	AC=1;AF=0.5;AN=2;DP=4611;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,22:98:99:857,0,3483:37,39,6,16
chr1	120462166	.	A	G	315.95	PASS	AC=1;AF=0.5;AN=2;DP=4012;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,14:92:99:428,0,3639:39,39,3,11
chr1	120462181	.	A	G	256.06	PASS	AC=1;AF=0.5;AN=2;DP=3577;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-filterInvariant28-variant29-variant30-variant31-filterInvariant32-variant33-filterInvariant34-variant36-filterInvariant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,12:92:99:257,0,3682:38,42,3,9
chr1	120462184	.	C	T	223.1	PASS	AC=1;AF=0.5;AN=2;DP=3458;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant27-filterInvariant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant36-filterInvariant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,9:87:99:207,0,3727:37,41,1,8
chr1	120462186	.	A	G	223.1	PASS	AC=1;AF=0.5;AN=2;DP=3435;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant27-filterInvariant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant36-filterInvariant37-variant38-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:82,8:90:99:132,0,3607:38,44,1,7
chr1	120463230	.	C	T	157.56	PASS	AC=1;AF=0.5;AN=2;DP=190;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:178,0,306:2,8,1,5
chr1	120464165	.	C	T	259.36	PASS	AC=1;AF=0.5;AN=2;DP=464;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:382,0,434:11,1,10,1
chr1	120465584	.	A	T	648.28	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:330,0,575:3,14,2,10
chr1	120466108	.	G	A	397.38	PASS	AC=1;AF=0.5;AN=2;DP=462;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,27:42:99:858,0,543:15,0,22,5
chr1	120466502	.	A	T	281.52	PASS	AC=1;AF=0.5;AN=2;DP=7234;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-variant27-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant36-variant37-variant38-variant39-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:186,15:201:61:61,0,7891:99,87,7,8
chr1	120466511	.	A	C	303.99	PASS	AC=1;AF=0.5;AN=2;DP=7555;MQ=60;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-filterInvariant25-variant27-filterInvariant28-filterInvariant31-variant32-filterInvariant33-filterInvariant34-variant36-variant37-variant38-variant39-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:187,16:203:99:100,0,7854:99,88,7,9
chr1	120466535	.	A	G	112.47	PASS	AC=1;AF=0.5;AN=2;DP=5504;MQ=60;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-filterInvariant8-variant10-filterInvariant11-filterInvariant12-filterInvariant17-filterInvariant19-filterInvariant20-variant21-variant23-variant24-filterInvariant25-filterInvariant27-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:179,16:195:99:109,0,7763:92,87,7,9
chr1	120466547	.	A	G	411.68	PASS	AC=1;AF=0.5;AN=2;DP=8042;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:174,15:189:99:136,0,7426:89,85,6,9
chr1	120466548	.	C	G	408.67	PASS	AC=1;AF=0.5;AN=2;DP=8036;FractionInformativeReads=1;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:175,15:190:99:130,0,7506:90,85,6,9
chr1	120466556	.	C	T	406.14	PASS	AC=1;AF=0.5;AN=2;DP=7768;FractionInformativeReads=1;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant27-filterInvariant28-filterInvariant29-filterInvariant31-variant32-variant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:174,16:190:99:139,0,7340:90,84,7,9
chr1	120466569	.	T	C	52.15	PASS	AC=1;AF=0.5;AN=2;DP=5331;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant12-filterInvariant16-filterInvariant19-filterInvariant20-variant21-variant23-variant24-variant25-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:183,16:199:99:115,0,7508:91,92,7,9
chr1	120466754	.	G	C	148.64	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:476,0,487:4,13,3,12
chr1	120468308	.	G	A	36.08	PASS	AC=1;AF=0.5;AN=2;DP=1418;FractionInformativeReads=1;MQ=60;set=filterInvariant-variant2-variant3-filterInvariant5-filterInvariant13-variant24-variant32-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:144,18:162:99:256,0,8206:69,75,6,12
chr1	120468317	.	G	A	501.24	PASS	AC=1;AF=0.5;AN=2;DP=1240;FractionInformativeReads=1;MQ=60;set=variant2-variant3-filterInvariant5-filterInvariant13-variant24-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:79,83:162:99:2467,0,2016:38,41,38,45
chr1	120468324	.	C	T	495.19	PASS	AC=1;AF=0.5;AN=2;DP=1235;FractionInformativeReads=1;MQ=60;set=variant2-variant3-filterInvariant5-filterInvariant13-variant24-variant32-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:147,14:161:99:152,0,8648:72,75,3,11
chr1	120468325	.	G	T	498.2	PASS	AC=1;AF=0.5;AN=2;DP=1230;FractionInformativeReads=1;MQ=60;set=variant2-variant3-filterInvariant5-filterInvariant13-variant24-variant32-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:147,14:161:99:152,0,8648:72,75,3,11
chr1	120468326	.	G	A	489.16	PASS	AC=1;AF=0.5;AN=2;DP=1225;FractionInformativeReads=1;MQ=60;set=variant2-variant3-filterInvariant5-filterInvariant13-variant24-filterInvariant32-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:145,14:159:99:130,0,8667:71,74,3,11
chr1	120468330	.	C	T	507.23	PASS	AC=1;AF=0.5;AN=2;DP=1041;FractionInformativeReads=1;MQ=60;set=variant2-variant3-filterInvariant13-variant24-filterInvariant32-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:147,14:161:99:130,0,8596:71,76,3,11
chr1	120468332	.	G	A	519.27	PASS	AC=1;AF=0.5;AN=2;DP=1043;FractionInformativeReads=1;MQ=60;set=variant2-variant3-filterInvariant13-variant24-filterInvariant32-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:146,14:160:99:139,0,8400:69,77,3,11
chr1	120471424	.	C	T	330.65	PASS	AC=2;AF=1;AN=2;DP=318;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:219,15,0:0,0,5,0
chr1	120477998	.	C	A	988.15	PASS	AC=1;AF=0.5;AN=2;DP=1378;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,27:72:99:613,0,1271:30,15,17,10
chr1	120478285	.	T	C	2133.06	PASS	AC=1;AF=0.784;AN=2;DP=2680;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:32,30:62:99:884,0,799:13,19,7,23
chr1	120478352	.	T	G	315.5	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:226,0,330:1,8,1,6
chr1	120480394	.	T	C	458.54	PASS	AC=2;AF=0.989;AN=2;DP=552;MQ=60;MQRankSum=-1.109;ReadPosRankSum=0.471;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:545,48,0:0,0,12,4
chr1	120484421	.	G	A	438.67	PASS	AC=1;AF=0.5;AN=2;DP=676;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant18-variant25-variant28-variant29-variant31-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:459,0,415:4,11,6,12
chr1	120491301	.	G	C	640.81	PASS	AC=1;AF=0.5;AN=2;DP=227;FractionInformativeReads=1;MQ=60;set=variant2-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,31:75:99:971,0,1138:16,28,5,26
chr1	120505996	.	G	C	1197.82	PASS	AC=1;AF=0.795;AN=2;DP=1366;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:318,0,646:16,6,9,4
chr1	120506032	.	G	A	671.89	PASS	AC=1;AF=0.5;AN=2;DP=143;FractionInformativeReads=1;MQ=60;set=variant2-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:812,0,634:15,7,17,7
chr1	120510377	.	T	G	618.63	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=1.559;FractionInformativeReads=1;MQ=60;MQRankSum=0.325;QD=15.47;ReadPosRankSum=1.029;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:647,0,623:5,16,3,16
chr1	120512104	.	T	C	792.38	PASS	AC=2;AF=0.989;AN=2;DP=1751;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1571,129,0:0,0,33,10
chr1	120611554	.	T	C	379.97	PASS	AC=1;AF=0.5;AN=2;DP=10721;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:196,82:278:99:2839,0,9067:104,92,46,36
chr1	120611555	.	T	G	379.97	PASS	AC=1;AF=0.5;AN=2;DP=10554;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-filterInvariant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:195,82:277:99:2839,0,9067:103,92,46,36
chr1	120611610	.	C	G	843.95	PASS	AC=1;AF=0.5;AN=2;DP=347;FS=11.072;FractionInformativeReads=0.994;MQ=41.05;MQRankSum=2.113;QD=2.43;ReadPosRankSum=-3.757;SOR=1.299;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:277,68:345:99:872,0,6936:141,136,43,25
chr1	120611715	.	A	G	2128.3	PASS	AC=1;AF=0.5;AN=2;DP=11031;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:181,107:288:99:2286,0,4486:83,98,61,46
chr1	120611808	.	T	C	524.86	PASS	AC=1;AF=0.5;AN=2;DP=239;FS=10.749;FractionInformativeReads=1;MQ=51.77;MQRankSum=0.425;QD=2.2;ReadPosRankSum=-2.352;SOR=1.469;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:199,40:239:99:553,0,5585:95,104,13,27
chr1	120612002	.	CGG	C	1204.97	PASS	AC=1;AF=0.5;AN=2;DP=4011;set=variant3-filterInvariant6-variant10-filterInvariant12-variant17-filterInvariant30-variant34-filterInvariant37-variant38-variant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:308,36:344:99:547,0,12585:164,144,19,17
chr1	120612006	.	G	A,C	3792.33	PASS	AC=1,0;AF=0.474,0.026;AN=2;DP=16229;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:341:99:130,114,53,44
chr1	120612037	.	TCCTCCGCCG	T	155.53	PASS	AC=1;AF=0.5;AN=2;DP=8667;set=filterInvariant2-variant3-variant5-filterInvariant7-variant9-filterInvariant10-variant12-filterInvariant16-filterInvariant17-variant19-filterInvariant20-filterInvariant21-variant24-filterInvariant28-variant31-filterInvariant33-variant39-variant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:320,35:355:99:500,0,13188:165,155,23,12
chr1	120612043	.	G	T	563.19	PASS	AC=1;AF=0.5;AN=2;DP=814;set=filterInvariant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:246,72:318:99:1248,0,7610:130,116,37,35
chr1	120612154	.	C	G	1568.54	PASS	AC=1;AF=0.5;AN=2;DP=12396;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:242,51:293:99:1374,0,10147:99,143,24,27
chr1	120612163	.	C	A	1581.53	PASS	AC=1;AF=0.5;AN=2;DP=12075;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:235,51:286:99:1385,0,10073:99,136,24,27
chr1	120612194	.	C	G	240.1	PASS	AC=1;AF=0.5;AN=2;DP=5621;set=filterInvariant2-variant3-variant5-variant6-filterInvariant7-filterInvariant9-variant10-variant12-variant16-filterInvariant17-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant24-filterInvariant26-filterInvariant28-filterInvariant31-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:206,49:255:99:603,0,5318:83,123,18,31
chr1	120612223	.	AGCC	A	835.45	PASS	AC=1;AF=0.5;AN=2;DP=4797;set=variant2-variant3-variant5-variant6-filterInvariant7-variant9-variant10-variant12-filterInvariant14-variant16-filterInvariant17-variant19-filterInvariant20-variant21-filterInvariant24-filterInvariant26-variant28-variant31-filterInvariant33-variant37-variant38-variant39-filterInvariant40-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:163,33:196:99:835,0,6993:69,94,9,24
chr1	120612265	.	A	G	278.36	PASS	AC=1;AF=0.5;AN=2;DP=4799;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-filterInvariant26-variant27-filterInvariant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,20:139:99:264,0,3002:47,72,2,18
chr1	120846060	.	G	A	787.53	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=259;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:28,24:52:99:438,0,534:13,15,12,12
chr1	120904791	.	A	G	1586.55	PASS	AC=1;AF=0.888;AN=2;DP=2557;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,24:107:99:543,0,2157:38,45,11,13
chr1	120925663	.	C	T	1850.42	PASS	AC=2;AF=1;AN=2;DP=1944;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1301,126,0:0,0,14,28
chr1	120927081	.	C	T	64.76	PASS	AC=1;AF=0.691;AN=2;DP=511;set=filterInvariant-variant2-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant27-variant28-variant29-filterInvariant31-variant32-variant33-variant34-filterInvariant35-variant36-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,5:22:76:76,0,391:11,6,4,1
chr1	121115761	.	T	G	147.58	PASS	AC=1;AF=0.5;AN=2;DP=1749;set=variant-filterInvariant2-variant3-variant4-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant11-filterInvariant12-filterInvariant13-variant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant23-variant24-filterInvariant25-variant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-filterInvariant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:33,13:46:99:266,0,1124:30,3,11,2
chr1	121115786	.	C	A	294.44	PASS	AC=1;AF=0.5;AN=2;DP=2916;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-variant31-variant33-variant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:38,25:63:99:661,0,1190:31,7,25,0
chr1	121116688	.	A	G	2955.37	PASS	AC=1;AF=0.529;AN=2;DP=9195;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,79:160:99:2090,0,2058:46,35,47,32
chr1	121116933	.	T	C	1061.74	PASS	AC=1;AF=0.676;AN=2;DP=1807;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:861,0,726:4,19,3,24
chr1	121116953	.	A	G	984.23	PASS	AC=1;AF=0.671;AN=2;DP=1222;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:493,0,475:1,13,0,14
chr1	121124501	.	C	A	95.97	PASS	AC=1;AF=0.5;AN=2;DP=128;FractionInformativeReads=1;set=variant7-variant9-variant23-variant26-variant29-variant32-variant33-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:60:60,0,269:3,6,2,2
chr1	121124514	.	G	A	132.71	PASS	AC=1;AF=0.5;AN=2;DP=83;FractionInformativeReads=1;set=variant7-variant26-variant29-variant33-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:66:66,0,261:2,5,2,2
chr1	142542707	.	TGGAGTGGAGTGG	T	73.27	PASS	AC=1;AF=0.5;AN=2;DP=565;set=variant2-variant4-variant5-variant6-variant9-variant13-variant15-filterInvariant16-variant18-variant21-variant24-variant25-filterInvariant27-variant32-variant37-variant39-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:162,0,657:10,5,4,1
chr1	142542708	.	G	T	62.36	PASS	AC=1;AF=0.5;AN=2;DP=696;set=variant-variant2-variant3-variant6-variant7-variant8-filterInvariant9-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:96:96,0,411:8,2,3,0
chr1	142542709	.	G	T	62.36	PASS	AC=1;AF=0.5;AN=2;DP=704;set=variant-variant2-variant3-variant6-variant7-variant8-filterInvariant9-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:93:93,0,453:8,2,3,0
chr1	142542710	.	A	C	62.36	PASS	AC=1;AF=0.5;AN=2;DP=691;set=variant-variant2-variant3-variant6-variant7-variant8-filterInvariant9-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-filterInvariant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:87:87,0,537:7,2,3,0
chr1	142542711	.	G	C	61.61	PASS	AC=1;AF=0.5;AN=2;DP=257;FractionInformativeReads=1;set=variant8-variant13-variant16-variant17-variant21-variant26-variant28-filterInvariant32-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:87:87,0,537:8,2,2,1
chr1	142542719	.	G	GAC	46.56	PASS	AC=1;AF=0.5;AN=2;DP=271;FractionInformativeReads=1;set=variant8-variant13-variant16-variant17-filterInvariant21-variant26-filterInvariant28-variant34-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:16,3:19:75:75,0,705:11,5,2,1
chr1	142542720	.	TGTGGAGTGGAGTGGA	T,TAGTGGAGTGGA	259.98	PASS	AC=0,1;AF=0.263,0.237;AN=2;DP=663;set=variant6-variant13-variant16-variant17-filterInvariant21-variant23-filterInvariant24-filterInvariant26-variant28-variant30-filterInvariant32-variant33-variant34-variant36-variant38-variant40-filterInvariant41-variant43-variant44	GT:DP:GQ:SB	0/2:21:72:11,7,2,1
chr1	142542721	.	G	T	49.27	PASS	AC=1;AF=0.5;AN=2;DP=622;set=filterInvariant2-variant4-variant5-variant6-variant9-variant13-filterInvariant15-filterInvariant16-variant18-variant21-variant24-variant25-variant32-variant37-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:18,5:23:99:150,0,791:9,9,4,1
chr1	142542722	.	TGGA	T	73.34	PASS	AC=1;AF=0.5;AN=2;DP=567;FractionInformativeReads=1;set=variant2-variant4-variant5-variant6-variant9-variant13-variant15-filterInvariant16-variant18-variant21-variant24-variant25-filterInvariant27-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:165,0,615:9,6,4,1
chr1	142542727	.	TGGA	T	31.51	PASS	AC=1;AF=0.5;AN=2;DP=250;FractionInformativeReads=1;set=filterInvariant8-variant13-variant16-variant17-filterInvariant21-filterInvariant26-variant34-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:17,3:20:75:75,0,705:11,6,2,1
chr1	142542734	.	G	A	37.53	PASS	AC=1;AF=0.5;AN=2;DP=331;FractionInformativeReads=1;set=filterInvariant8-variant13-variant16-variant17-filterInvariant21-filterInvariant26-filterInvariant28-variant34-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:18,3:21:72:72,0,732:11,7,2,1
chr1	142542735	.	A	T	61.31	PASS	AC=1;AF=0.5;AN=2;DP=588;set=filterInvariant2-variant4-variant5-variant6-variant9-variant13-variant15-filterInvariant16-variant18-variant21-variant24-variant25-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,5:22:99:156,0,741:10,7,4,1
chr1	142542736	.	GTGGAATGGAA	GTGGAATGGAATGGAA,G,GTGGAATGGAATGGAATGGAA	30.01	PASS	AC=0,1,0;AF=0.289,0.184,0.026;AN=2;DP=693;set=filterInvariant3-variant4-variant7-filterInvariant12-variant13-variant14-variant16-filterInvariant19-variant20-variant21-variant22-filterInvariant26-variant29-variant31-variant33-filterInvariant37-variant38-variant39-variant41	GT:DP:GQ:SB	0/2:26:99:14,8,1,3
chr1	142542743	.	G	A	43.25	PASS	AC=1;AF=0.5;AN=2;DP=643;set=filterInvariant2-variant4-filterInvariant5-variant6-variant9-variant13-filterInvariant15-filterInvariant16-variant18-variant21-variant24-variant25-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,5:26:99:147,0,867:11,10,4,1
chr1	142542752	.	T	A	178.4	PASS	AC=1;AF=0.5;AN=2;DP=548;FractionInformativeReads=1;set=variant4-variant6-variant9-variant13-filterInvariant16-variant18-filterInvariant21-variant24-variant25-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,4:30:99:132,0,1066:13,13,3,1
chr1	142542779	.	G	T	385.13	PASS	AC=1;AF=0.5;AN=2;DP=672;set=variant6-filterInvariant9-variant23-variant24-variant25-filterInvariant30-variant32-variant37-variant38-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:32,5:37:76:76,0,984:15,17,5,0
chr1	142542833	.	A	T	85.25	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=175;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:46,6:52:99:113,0,1893:23,23,2,4
chr1	142542846	.	A	G	70.19	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=185;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:51,6:57:98:98,0,2123:25,26,2,4
chr1	142542861	.	T	G	61.16	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=196;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:54,6:60:89:89,0,2249:28,26,2,4
chr1	142542976	.	T	G	1356.05	PASS	AC=2;AF=0.83;AN=2;DP=2290;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:613,60,0:0,0,8,12
chr1	142667306	.	C	T	202.59	PASS	AC=1;AF=0.5;AN=2;DP=1616;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:230,0,195:4,4,5,2
chr1	142667399	.	A	G	212.86	PASS	AC=1;AF=0.5;AN=2;DP=1369;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:105,0,195:4,4,2,3
chr1	142713009	.	A	G	97.63	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=24.81;QD=19.53;SOR=3.611;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:126,15,0:0,0,5,0
chr1	142813104	.	C	T	94.19	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=27.53;MQRankSum=0.475;QD=3.04;ReadPosRankSum=0.575;SOR=0.909;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:25,6:31:99:122,0,695:22,3,6,0
chr1	142825124	.	T	C	597.79	PASS	AC=1;AF=0.5;AN=2;DP=1127;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant21-variant22-filterInvariant24-variant25-variant26-variant30-variant31-variant32-variant33-variant35-variant36-filterInvariant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:203,0,588:6,14,4,7
chr1	142826178	.	G	A	165.08	PASS	AC=1;AF=0.594;AN=2;DP=478;set=variant-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant24-variant25-variant26-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:84:84,0,194:4,4,3,0
chr1	142826237	.	G	A	406.42	PASS	AC=1;AF=0.5;AN=2;DP=503;set=variant4-filterInvariant5-variant8-variant10-filterInvariant12-variant16-variant26-filterInvariant32-filterInvariant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,9:37:99:219,0,877:21,7,8,1
chr1	142826369	.	C	A	2438.06	PASS	AC=1;AF=0.614;AN=2;DP=8960;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:39,139:178:99:3320,0,651:22,17,81,58
chr1	142826519	.	T	A	1872.91	PASS	AC=2;AF=1;AN=2;DP=1933;FS=0;MQRankSum=0.276;ReadPosRankSum=-0.377;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-filterInvariant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1533,129,0:0,0,3,40
chr1	142849522	.	A	C	59.99	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=51;FS=0;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:121,12,0:0,0,1,3
chr1	142873736	.	C	T	126.43	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=30.76;MQRankSum=-0.572;QD=15.8;ReadPosRankSum=1.067;SOR=1.061;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:44:155,0,44:2,0,2,4
chr1	143163731	.	C	A	44.77	PASS	AC=1;AF=0.5;AN=2;DP=710;FractionInformativeReads=1;set=filterInvariant3-variant6-variant8-filterInvariant9-variant11-variant12-variant13-filterInvariant14-variant16-filterInvariant18-variant19-variant20-variant21-variant23-variant24-variant28-variant30-variant33-variant35-filterInvariant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:268,0,460:12,3,8,5
chr1	143163749	.	A	C	215.6	PASS	AC=1;AF=0.512;AN=2;DP=1244;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:496,0,282:9,3,12,8
chr1	143163799	.	G	A	32.09	PASS	AC=1;AF=0.5;AN=2;DP=685;FractionInformativeReads=1;set=filterInvariant4-variant6-variant8-filterInvariant9-variant11-variant12-variant13-variant14-variant16-variant19-variant23-variant24-variant27-variant28-filterInvariant29-variant33-variant35-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:279,0,439:9,9,6,8
chr1	143163914	.	T	A	49.73	PASS	AC=1;AF=0.5;AN=2;DP=80;set=variant8-variant9-variant18-variant25-variant26-variant33-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,423:0,5,0,2
chr1	143163915	.	G	C	49.73	PASS	AC=1;AF=0.5;AN=2;DP=76;FractionInformativeReads=1;set=variant8-variant9-variant18-variant25-variant26-variant33-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,423:0,5,0,2
chr1	143187297	.	G	C	356.2	PASS	AC=1;AF=0.618;AN=2;DP=530;set=variant-variant4-variant5-variant10-variant13-variant14-variant19-variant21-variant23-variant24-variant27-variant33-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,18:25:99:409,0,152:4,3,8,10
chr1	143424027	.	A	C	41.5	PASS	AC=1;AF=0.741;AN=2;DP=147;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant20-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-filterInvariant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,165:4,0,2,0
chr1	143767312	.	G	T	242.84	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1726;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:40,16:56:99:272,0,958:34,6,16,0
chr1	143767513	.	A	T	5010.51	PASS	AC=1;AF=0.5;AN=2;DP=27507;set=variant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:410,178:588:99:5881,0,16128:183,227,75,103
chr1	143767522	.	A	G	4756.18	PASS	AC=1;AF=0.5;AN=2;DP=26956;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:398,164:562:99:5719,0,15922:177,221,66,98
chr1	143767547	.	G	A	3632.87	PASS	AC=1;AF=0.5;AN=2;DP=22221;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:351,132:483:99:2159,0,8584:156,195,48,84
chr1	143767628	.	C	T	352.58	PASS	AC=1;AF=0.5;AN=2;DP=5273;set=filterInvariant2-variant6-filterInvariant7-filterInvariant8-filterInvariant11-filterInvariant15-filterInvariant16-filterInvariant19-filterInvariant22-filterInvariant23-filterInvariant28-variant30-variant34-filterInvariant35-filterInvariant36-filterInvariant38-filterInvariant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:257,36:293:99:268,0,6946:122,135,8,28
chr1	143767643	.	T	C	749.77	PASS	AC=1;AF=0.5;AN=2;DP=9706;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-variant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:223,49:272:99:631,0,5593:114,109,16,33
chr1	143767778	.	T	A	330.33	PASS	AC=1;AF=0.5;AN=2;DP=7749;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant6-variant7-filterInvariant8-filterInvariant16-filterInvariant19-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:226,45:271:99:312,0,6145:109,117,13,32
chr1	144013853	.	T	C	707.65	PASS	AC=1;AF=0.5;AN=2;DP=8614;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-filterInvariant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,59:216:99:1233,0,3979:89,68,38,21
chr1	144013865	.	T	G	905.04	PASS	AC=1;AF=0.5;AN=2;DP=9730;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:175,64:239:99:1369,0,4867:98,77,39,25
chr1	144014051	.	G	A	675.35	PASS	AC=1;AF=0.5;AN=2;DP=5824;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,45:161:99:1063,0,3160:46,70,14,31
chr1	144014068	.	T	C	972.73	PASS	AC=1;AF=0.5;AN=2;DP=4700;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,91:134:99:2486,0,942:16,27,36,55
chr1	144052641	.	CAAAAA	CAAA,CAA,CA,C,CAAAAAA,CAAAA	221.22	PASS	AC=0,0,0,0,0,2;AF=0.097,0.21,0.113,0.032,0.016,0.048;AN=2;DP=1647;set=variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-filterInvariant12-variant13-variant15-variant16-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	6/6:21:5:3,1,17,0
chr1	144094581	.	C	T	55.03	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=27.43;MQRankSum=1.231;QD=11.01;ReadPosRankSum=1.231;SOR=1.022;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:41:83,0,41:2,0,3,0
chr1	144193482	.	G	A	110.72	PASS	AC=1;AF=0.55;AN=2;DP=122;FractionInformativeReads=1;set=variant4-variant11-variant15-variant22-variant28-filterInvariant34-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:82:121,0,82:2,1,3,3
chr1	144615080	.	A	G	132.49	PASS	AC=2;AF=0.917;AN=2;DP=63;FractionInformativeReads=1;MQRankSum=-1.645;ReadPosRankSum=0.627;set=filterInvariant3-variant21-variant36-variant39-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:491,39,0:0,0,12,1
chr1	144615246	.	A	AAG	365.98	PASS	AC=1;AF=0.625;AN=2;DP=1955;set=variant-variant3-filterInvariant8-variant9-variant10-variant12-variant13-variant14-filterInvariant17-variant18-variant19-variant21-variant25-variant28-variant29-filterInvariant30-variant31-variant34-variant38-variant39-filterInvariant40-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:82,12:94:99:228,0,3159:35,47,6,6
chr1	144617119	.	A	C	562.37	PASS	AC=2;AF=0.681;AN=2;DP=2158;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1232,90,0:0,0,29,1
chr1	144617319	.	C	T	672.7	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=2.113;FractionInformativeReads=1;MQ=55.05;MQRankSum=0.942;QD=8.85;ReadPosRankSum=0.5;SOR=0.42;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,32:76:99:701,0,1222:12,32,11,21
chr1	144617992	.	T	A	113.81	PASS	AC=1;AF=0.5;AN=2;DP=1683;set=variant2-variant4-variant6-variant10-variant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-variant20-variant21-variant22-filterInvariant23-variant25-variant26-variant27-variant28-variant29-filterInvariant34-variant35-variant40-filterInvariant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,5:58:99:118,0,2259:37,16,4,1
chr1	144617994	.	A	G	95.79	PASS	AC=1;AF=0.5;AN=2;DP=1909;set=filterInvariant2-variant4-variant6-variant10-variant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant34-variant35-filterInvariant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,7:62:99:169,0,2253:37,18,6,1
chr1	144618009	.	A	G	969.59	PASS	AC=1;AF=0.5;AN=2;DP=4356;set=variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,17:84:99:367,0,1708:44,23,12,5
chr1	144618070	.	G	A	1779.77	PASS	AC=1;AF=0.5;AN=2;DP=9246;set=variant-filterInvariant2-variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant23-filterInvariant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:132,43:175:99:654,0,2961:76,56,21,22
chr1	144618144	.	A	G	2855.35	PASS	AC=2;AF=0.852;AN=2;DP=11016;set=variant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:4910,522,0:0,0,77,97
chr1	144619318	.	G	A	3144.9	PASS	AC=2;AF=0.676;AN=2;DP=6475;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4268,402,0:0,0,84,50
chr1	144619346	.	G	A	4440.23	PASS	AC=1;AF=0.635;AN=2;DP=8375;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:109,86:195:99:1877,0,2553:60,49,48,38
chr1	144619483	.	A	C	5031.2	PASS	AC=2;AF=0.654;AN=2;DP=6841;set=variant-variant2-variant3-variant4-filterInvariant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4477,428,0:0,0,51,92
chr1	144619903	.	T	A	110.51	PASS	AC=2;AF=1;AN=2;DP=64;FS=0;FractionInformativeReads=1;set=filterInvariant3-filterInvariant4-variant10-filterInvariant14-variant19-filterInvariant21-filterInvariant31-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:132,12,0:0,0,1,3
chr1	144619961	.	C	T	41.26	PASS	AC=1;AF=0.5;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=42.49;MQRankSum=0.358;QD=8.25;ReadPosRankSum=0.358;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:69:69,0,108:0,3,0,2
chr1	144620009	.	T	C	389.73	PASS	AC=1;AF=0.556;AN=2;DP=159;FractionInformativeReads=1;set=filterInvariant3-filterInvariant10-filterInvariant17-filterInvariant30-filterInvariant31-filterInvariant38-filterInvariant40-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:268,0,195:5,3,7,3
chr1	144620091	.	C	T	1061.94	DRAGENHardSNP	AC=1;AF=0.6;AN=2;DP=1957;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:53,35:88:99:678,0,1117:32,21,22,13
chr1	144621642	.	A	G	1699.91	PASS	AC=1;AF=0.5;AN=2;DP=2224;set=variant-variant4-variant8-variant9-filterInvariant10-variant14-variant18-variant19-variant21-variant25-variant33-variant39-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:142,14:156:99:135,0,7251:50,92,3,11
chr1	144621643	.	G	A	1699.91	PASS	AC=1;AF=0.5;AN=2;DP=2168;set=variant-variant4-variant8-variant9-filterInvariant10-variant14-variant18-variant19-variant21-variant25-variant33-variant39-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:139,14:153:99:135,0,7251:50,89,3,11
chr1	144676646	.	T	C	185.66	PASS	AC=2;AF=0.6;AN=2;DP=2074;set=filterInvariant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-filterInvariant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant17-variant18-variant19-filterInvariant21-variant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant29-variant30-filterInvariant31-variant33-filterInvariant35-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:148,18,0:0,0,3,3
chr1	144680070	.	T	C	38.3	PASS	AC=2;AF=1;AN=2;DP=20;FS=0;FractionInformativeReads=1;set=filterInvariant-filterInvariant5-filterInvariant11-filterInvariant21-filterInvariant24-filterInvariant28-filterInvariant31-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:71,6,0:0,0,0,2
chr1	144811836	.	G	A	147.19	PASS	AC=2;AF=0.881;AN=2;DP=2471;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:50:1254,50,0:0,0,31,0
chr1	144811924	.	T	G	4451.43	PASS	AC=2;AF=0.989;AN=2;DP=6738;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2751,290,0:0,0,51,46
chr1	144813718	.	A	G	794.4	PASS	AC=1;AF=0.726;AN=2;DP=1733;set=variant2-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-variant12-filterInvariant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,17:73:99:484,0,1370:31,25,15,2
chr1	144816086	.	C	G	640.14	PASS	AC=1;AF=0.571;AN=2;DP=439;FractionInformativeReads=1;set=variant23-variant32-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,32:50:99:794,0,329:8,10,13,19
chr1	144824146	.	A	C	102.96	PASS	AC=2;AF=1;AN=2;DP=99;FS=0;FractionInformativeReads=1;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant6-variant8-filterInvariant11-filterInvariant13-filterInvariant14-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant29-filterInvariant31-filterInvariant32-filterInvariant34-filterInvariant37-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:101,9,0:0,0,0,3
chr1	144824666	.	A	C	96.55	PASS	AC=2;AF=0.917;AN=2;DP=107;FractionInformativeReads=1;set=filterInvariant2-filterInvariant15-filterInvariant16-filterInvariant20-filterInvariant23-filterInvariant26-filterInvariant32-filterInvariant35-variant39-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:313,27,0:0,0,5,4
chr1	144824967	.	C	G	54.21	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:170,0,183:2,4,1,5
chr1	144825577	.	G	A	399.21	PASS	AC=1;AF=0.5;AN=2;DP=2042;FractionInformativeReads=1;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,32:67:99:767,0,920:16,19,11,21
chr1	144825681	.	T	C	152.49	PASS	AC=1;AF=0.5;AN=2;DP=663;set=variant2-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant25-filterInvariant26-variant27-variant29-variant30-variant33-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:84:84,0,418:5,10,2,3
chr1	144825721	.	T	C	44.68	PASS	AC=1;AF=0.5;AN=2;DP=238;set=variant3-filterInvariant5-variant9-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant25-filterInvariant26-variant33-filterInvariant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:70:70,0,302:1,8,1,3
chr1	144828404	.	T	A	402.8	PASS	AC=1;AF=0.5;AN=2;DP=1086;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:854,0,736:16,4,23,2
chr1	144828418	.	C	T	133.15	PASS	AC=1;AF=0.5;AN=2;DP=1362;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,15:49:99:406,0,1282:31,3,13,2
chr1	144828454	.	G	C	87.25	PASS	AC=1;AF=0.619;AN=2;DP=2266;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,53:80:99:1561,0,746:22,5,42,11
chr1	144828484	.	G	A	112.8	PASS	AC=1;AF=0.5;AN=2;DP=3320;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-variant19-filterInvariant20-variant21-filterInvariant22-variant23-filterInvariant25-filterInvariant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-filterInvariant36-variant37-variant39-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:93,17:110:99:396,0,3862:72,21,11,6
chr1	144828497	.	C	T	52.53	PASS	AC=1;AF=0.5;AN=2;DP=3347;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-filterInvariant15-filterInvariant17-filterInvariant19-variant21-filterInvariant22-variant23-filterInvariant25-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant39-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:111,18:129:99:373,0,4281:83,28,11,7
chr1	144828748	.	C	T	99.26	PASS	AC=1;AF=0.5;AN=2;DP=6264;set=filterInvariant-filterInvariant4-variant5-filterInvariant6-filterInvariant10-filterInvariant11-variant12-filterInvariant15-variant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant28-variant31-variant34-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:209,33:242:99:203,0,5297:89,120,19,14
chr1	144828764	.	G	T	544.19	PASS	AC=1;AF=0.5;AN=2;DP=9929;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-filterInvariant7-filterInvariant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:203,37:240:99:943,0,8346:75,128,20,17
chr1	144828765	.	A	T	544.19	PASS	AC=1;AF=0.5;AN=2;DP=9922;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-filterInvariant7-filterInvariant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:203,37:240:99:943,0,8297:75,128,20,17
chr1	144828784	.	A	G	226.11	PASS	AC=1;AF=0.5;AN=2;DP=8286;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-variant5-variant6-filterInvariant7-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant13-variant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-filterInvariant22-variant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant34-filterInvariant35-filterInvariant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:167,42:209:99:502,0,4419:51,116,24,18
chr1	144828845	.	A	T	1049.62	PASS	AC=1;AF=0.5;AN=2;DP=3145;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant33-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,22:108:99:323,0,2684:30,56,6,16
chr1	144828857	.	C	G	843.64	PASS	AC=1;AF=0.5;AN=2;DP=2623;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant39-variant40-filterInvariant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,13:82:99:181,0,2356:19,50,2,11
chr1	144828910	.	A	T	183.07	PASS	AC=1;AF=0.5;AN=2;DP=1207;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:259,0,363:1,13,4,7
chr1	144852321	.	C	A	91.83	PASS	AC=1;AF=0.5;AN=2;DP=2231;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,19:47:99:461,0,678:14,14,11,8
chr1	144852390	.	C	T	146.07	PASS	AC=1;AF=0.5;AN=2;DP=2786;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:589,0,806:15,17,14,13
chr1	144852476	.	T	C	275.96	PASS	AC=1;AF=0.5;AN=2;DP=1842;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:35,9:44:99:147,0,895:15,20,2,7
chr1	144852545	.	C	T	331.4	PASS	AC=1;AF=0.5;AN=2;DP=828;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:279,0,354:6,9,3,8
chr1	144854180	.	T	C	2026.92	PASS	AC=1;AF=0.5;AN=2;DP=7056;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:109,45:154:99:916,0,3259:80,29,28,17
chr1	144854245	.	C	T	2201.49	PASS	AC=1;AF=0.5;AN=2;DP=16305;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:317,48:365:99:358,0,9163:180,137,28,20
chr1	144854277	.	A	G	5887.67	PASS	AC=1;AF=0.511;AN=2;DP=19169;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:196,242:438:99:5668,0,4467:103,93,124,118
chr1	144854341	.	CCT	C	1376.54	PASS	AC=1;AF=0.5;AN=2;DP=715;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:314,53:367:99:1263,0,13448:144,170,26,27
chr1	144854351	.	A	C	5707	PASS	AC=1;AF=0.784;AN=2;DP=13823;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:73,262:335:99:7782,0,1034:33,40,116,146
chr1	144854380	.	T	C	4238.04	PASS	AC=1;AF=0.5;AN=2;DP=10209;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:186,81:267:99:1854,0,6185:68,118,34,47
chr1	144854397	.	T	C	5409.55	PASS	AC=1;AF=0.807;AN=2;DP=7614;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,146:200:99:5161,0,1208:19,35,54,92
chr1	144854412	.	A	C	2069.17	PASS	AC=1;AF=0.5;AN=2;DP=6201;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:107,56:163:99:1429,0,3682:38,69,21,35
chr1	144854491	.	T	G	1770.3	PASS	AC=1;AF=0.5;AN=2;DP=6105;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,51:154:99:1829,0,4730:53,50,26,25
chr1	144854497	.	A	G	1927.75	PASS	AC=1;AF=0.5;AN=2;DP=6446;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,53:160:99:1864,0,4808:54,53,27,26
chr1	144854528	.	A	G	402.94	PASS	AC=1;AF=0.5;AN=2;DP=7884;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:160,47:207:99:1448,0,7062:82,78,26,21
chr1	144854537	.	T	C	521.18	PASS	AC=1;AF=0.5;AN=2;DP=8319;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:164,48:212:99:1470,0,7179:87,77,26,22
chr1	144854581	.	T	C	1244.95	PASS	AC=1;AF=0.5;AN=2;DP=9251;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:169,46:215:99:853,0,4447:82,87,23,23
chr1	144854594	.	G	T	1371.64	PASS	AC=1;AF=0.5;AN=2;DP=8984;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:164,46:210:99:1431,0,7109:74,90,22,24
chr1	144854597	.	T	C	4504.87	PASS	AC=1;AF=0.5;AN=2;DP=8847;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:93,117:210:99:4604,0,3693:39,54,53,64
chr1	144854598	.	C	T	2548.15	PASS	AC=1;AF=0.5;AN=2;DP=8801;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:138,71:209:99:2524,0,5796:59,79,33,38
chr1	144854730	.	A	G	312.12	PASS	AC=1;AF=0.5;AN=2;DP=1113;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,10:38:99:296,0,957:3,25,1,9
chr1	144855812	.	T	C	234.82	PASS	AC=1;AF=0.5;AN=2;DP=662;FractionInformativeReads=1;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:93:93,0,275:6,6,2,3
chr1	144857068	.	A	T	189.98	PASS	AC=1;AF=0.5;AN=2;DP=667;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:271,0,241:1,6,1,7
chr1	144857783	.	A	C	765.33	PASS	AC=1;AF=0.5;AN=2;DP=182;FS=1.398;FractionInformativeReads=1;MQ=47.28;MQRankSum=-1.878;QD=4.21;ReadPosRankSum=-2.792;SOR=0.87;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:139,43:182:99:794,0,3661:61,78,17,26
chr1	144859720	.	G	C	91.72	PASS	AC=2;AF=0.818;AN=2;DP=943;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:655,63,0:0,0,14,7
chr1	144860026	.	G	C	91.69	PASS	AC=1;AF=0.5;AN=2;DP=1359;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:447,0,385:7,8,5,11
chr1	144863207	.	C	T,A	175.23	PASS	AC=1,0;AF=0.453,0.047;AN=2;DP=1763;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant12-variant15-variant16-variant17-variant18-variant20-variant22-filterInvariant24-filterInvariant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-filterInvariant36-variant38-variant39-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:69:99:30,26,7,6
chr1	144863208	.	A	G	580.29	PASS	AC=1;AF=0.511;AN=2;DP=2538;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,24:69:99:694,0,1129:25,20,12,12
chr1	144863505	.	A	G	538.74	PASS	AC=1;AF=0.5;AN=2;DP=4074;set=variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-variant30-variant31-filterInvariant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,25:105:99:425,0,2053:35,45,12,13
chr1	144863613	.	C	T	242.93	PASS	AC=1;AF=0.5;AN=2;DP=1312;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:540,0,393:2,11,3,14
chr1	144864454	.	G	A	112.19	PASS	AC=1;AF=0.5;AN=2;DP=1150;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:748,0,651:4,16,3,19
chr1	144865850	.	G	T	2165.41	PASS	AC=1;AF=0.5;AN=2;DP=8448;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:82,82:164:99:2006,0,1992:34,48,35,47
chr1	144866509	.	G	A	184.38	PASS	AC=1;AF=0.5;AN=2;DP=2643;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,39:82:99:1110,0,1068:26,17,29,10
chr1	144866643	.	G	A	134.98	PASS	AC=1;AF=0.5;AN=2;DP=8379;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:106,92:198:99:2159,0,2431:49,57,48,44
chr1	144866662	.	T	C	94.6	PASS	AC=1;AF=0.5;AN=2;DP=8117;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,84:186:99:2066,0,2220:45,57,40,44
chr1	144868170	.	C	T	401.66	PASS	AC=1;AF=0.5;AN=2;DP=3593;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,40:83:99:1156,0,1174:12,31,10,30
chr1	144868204	.	A	C	231.51	PASS	AC=1;AF=0.5;AN=2;DP=1849;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:28,24:52:99:733,0,856:7,21,4,20
chr1	144871738	.	C	A	451.41	PASS	AC=1;AF=0.5;AN=2;DP=2588;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,39:62:99:1563,0,1339:17,6,31,8
chr1	144871755	.	A	T	611.68	PASS	AC=1;AF=0.5;AN=2;DP=3227;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,51:84:99:1890,0,1558:21,12,34,17
chr1	144871782	.	A	G	659.76	PASS	AC=1;AF=0.5;AN=2;DP=4281;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:37,55:92:99:1442,0,863:24,13,32,23
chr1	144871889	.	A	C	1015.34	PASS	AC=1;AF=0.5;AN=2;DP=5859;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:71,58:129:99:1468,0,1761:35,36,19,39
chr1	144873794	.	C	T	1498.53	PASS	AC=1;AF=0.5;AN=2;DP=8324;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:119,95:214:99:2438,0,3023:76,43,68,27
chr1	144873818	.	A	G	2010.33	PASS	AC=1;AF=0.5;AN=2;DP=10772;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:148,119:267:99:2986,0,3861:91,57,79,40
chr1	144873840	.	A	G	2374.63	PASS	AC=1;AF=0.5;AN=2;DP=12461;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:172,144:316:99:3440,0,4453:101,71,88,56
chr1	144873887	.	C	T	2787.42	PASS	AC=1;AF=0.5;AN=2;DP=15002;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:193,180:373:99:4303,0,4906:104,89,85,95
chr1	144873962	.	CT	C	1440.02	PASS	AC=1;AF=0.5;AN=2;DP=12643;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:202,171:373:99:5723,0,6884:93,109,72,99
chr1	144874038	.	T	C	2554.08	PASS	AC=1;AF=0.5;AN=2;DP=10333;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:142,92:234:99:2335,0,3773:52,90,31,61
chr1	144874070	.	C	T	1978.37	PASS	AC=1;AF=0.5;AN=2;DP=6686;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:95,65:160:99:1599,0,2604:31,64,22,43
chr1	144874088	.	G	C	1643.95	PASS	AC=1;AF=0.5;AN=2;DP=4965;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:70,51:121:99:1458,0,2135:17,53,12,39
chr1	144874641	.	G	C	355.59	PASS	AC=1;AF=0.5;AN=2;DP=5382;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:66,44:110:99:1134,0,1808:42,24,28,16
chr1	144874760	.	T	C	1179.62	PASS	AC=1;AF=0.5;AN=2;DP=10355;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:138,96:234:99:2150,0,3434:70,68,47,49
chr1	144874835	.	G	A	374.41	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.586;QD=2.77;ReadPosRankSum=-1.702;SOR=0.68;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:110,25:135:99:403,0,2994:36,74,8,17
chr1	144875799	.	G	A	1527.03	PASS	AC=1;AF=0.5;AN=2;DP=4598;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:80,47:127:99:1250,0,2176:54,26,35,12
chr1	144877176	.	C	T	1129.88	PASS	AC=1;AF=0.5;AN=2;DP=4453;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,36:77:99:1058,0,1068:26,15,25,11
chr1	144877366	.	A	G	1309.05	PASS	AC=1;AF=0.5;AN=2;DP=5105;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:76,49:125:99:1304,0,1834:30,46,15,34
chr1	144877390	.	G	A	945.15	PASS	AC=1;AF=0.5;AN=2;DP=3645;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:52,33:85:99:876,0,1519:14,38,9,24
chr1	144878928	.	G	T	2504.06	PASS	AC=1;AF=0.5;AN=2;DP=10003;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:131,119:250:99:3068,0,3419:83,48,81,38
chr1	144878971	.	C	T	2182.35	PASS	AC=1;AF=0.5;AN=2;DP=404;FS=0.59;FractionInformativeReads=0.998;MQ=60;MQRankSum=-1.316;QD=5.4;ReadPosRankSum=-2.27;SOR=0.581;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:288,115:403:99:2211,0,7718:171,117,65,50
chr1	144879264	.	A	G	582.37	PASS	AC=1;AF=0.602;AN=2;DP=1746;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:689,0,591:10,11,7,13
chr1	144879375	.	T	C	691.25	PASS	AC=1;AF=0.5;AN=2;DP=4941;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,51:96:99:1457,0,1279:32,13,33,18
chr1	144881711	.	T	G	33.56	PASS	AC=1;AF=0.5;AN=2;DP=1325;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-variant5-variant6-variant7-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-filterInvariant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:595,0,761:3,20,8,14
chr1	144882581	.	A	G	1908.64	PASS	AC=1;AF=0.5;AN=2;DP=4418;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,56:118:99:1709,0,2161:38,24,36,20
chr1	144882823	.	C	T	5139.25	PASS	AC=1;AF=0.5;AN=2;DP=19290;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:199,218:417:99:5406,0,5129:75,124,83,135
chr1	144882912	.	G	T	994.54	PASS	AC=1;AF=0.5;AN=2;DP=4557;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,63:126:99:1767,0,1729:16,47,15,48
chr1	144886063	.	T	C	1145.18	PASS	AC=1;AF=0.5;AN=2;DP=4135;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:44,28:72:99:710,0,1156:28,16,20,8
chr1	144886092	.	C	T	1489.41	PASS	AC=1;AF=0.5;AN=2;DP=5434;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,46:100:99:1137,0,1438:33,21,29,17
chr1	144886197	.	A	T	2470.65	PASS	AC=1;AF=0.5;AN=2;DP=8208;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:87,79:166:99:1793,0,2005:43,44,40,39
chr1	144886409	.	A	C	236.09	PASS	AC=1;AF=0.5;AN=2;DP=1527;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:679,0,740:5,19,7,16
chr1	144890833	.	T	C	302.34	PASS	AC=1;AF=0.5;AN=2;DP=1166;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:515,0,561:15,3,14,4
chr1	144892089	.	G	T	914.53	PASS	AC=1;AF=0.5;AN=2;DP=3181;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:37,26:63:99:726,0,937:26,11,20,6
chr1	144892149	.	G	A	1865.57	PASS	AC=1;AF=0.5;AN=2;DP=6725;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,59:136:99:1234,0,1882:47,30,34,25
chr1	144901139	.	T	C	7615.44	PASS	AC=1;AF=0.5;AN=2;DP=21374;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:345,129:474:99:2651,0,8632:176,169,73,56
chr1	144909956	.	G	A	567.68	PASS	AC=1;AF=0.5;AN=2;DP=1113;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant8-variant12-filterInvariant13-variant16-variant17-variant20-variant21-variant27-variant30-variant31-variant32-variant34-variant39-variant40-filterInvariant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:57,12:69:99:115,0,1383:33,24,7,5
chr1	144910082	.	A	G	820.94	PASS	AC=1;AF=0.727;AN=2;DP=3090;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,58:70:99:1436,0,166:4,8,24,34
chr1	144911702	.	C	A	415.59	PASS	AC=1;AF=0.5;AN=2;DP=920;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:333,0,805:8,6,6,3
chr1	144911704	.	G	C	415.59	PASS	AC=1;AF=0.5;AN=2;DP=950;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:333,0,805:9,6,6,3
chr1	144912153	.	A	G	161.01	PASS	AC=1;AF=0.744;AN=2;DP=560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:183,0,152:4,1,3,2
chr1	144912233	.	C	T	371.08	PASS	AC=1;AF=0.5;AN=2;DP=1264;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,6:24:99:117,0,405:9,9,2,4
chr1	144912424	.	G	A	43.68	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=2.808;FractionInformativeReads=1;MQ=60;MQRankSum=1.307;QD=4.85;ReadPosRankSum=0.729;SOR=0.148;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:72:72,0,141:1,4,2,2
chr1	144915561	.	G	A	1600.31	PASS	AC=1;AF=0.5;AN=2;DP=6400;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:71,69:140:99:1637,0,1728:27,44,27,42
chr1	144915624	.	G	A	1014.16	PASS	AC=1;AF=0.5;AN=2;DP=2529;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:931,0,944:5,24,8,24
chr1	144916676	.	C	T	548.09	PASS	AC=1;AF=0.5;AN=2;DP=5205;MQ=60;set=variant-variant2-filterInvariant3-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant12-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-filterInvariant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,30:148:99:564,0,2952:62,56,14,16
chr1	144916748	.	C	G	1631.42	PASS	AC=1;AF=0.5;AN=2;DP=5632;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:73,66:139:99:1576,0,1768:32,41,29,37
chr1	144917546	.	A	G	1227.64	PASS	AC=1;AF=0.5;AN=2;DP=5831;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:55,62:117:99:1675,0,1421:27,28,31,31
chr1	144917827	.	CA	C	82.25	PASS	AC=1;AF=0.5;AN=2;DP=1055;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,9:36:99:229,0,901:17,10,5,4
chr1	144917841	.	T	C	590.47	PASS	AC=1;AF=0.5;AN=2;DP=1594;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:559,0,494:11,9,13,8
chr1	144918957	.	T	A	1270.16	PASS	AC=1;AF=0.5;AN=2;DP=3877;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:60,39:99:99:766,0,1408:29,31,20,19
chr1	144919008	.	AC	A	716.79	PASS	AC=1;AF=0.5;AN=2;DP=2546;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-filterInvariant38-variant39-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,17:81:99:383,0,2101:27,37,8,9
chr1	144919094	.	C	T	469.18	PASS	AC=1;AF=0.5;AN=2;DP=1116;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:293,0,357:1,10,3,8
chr1	144922109	.	A	G	1979.31	PASS	AC=1;AF=0.5;AN=2;DP=9221;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:111,113:224:99:2896,0,2873:60,51,55,58
chr1	144922171	.	C	T	1873.19	PASS	AC=1;AF=0.5;AN=2;DP=10009;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:117,105:222:99:2660,0,3035:63,54,46,59
chr1	144922523	.	C	T	644.47	PASS	AC=1;AF=0.5;AN=2;DP=4763;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-filterInvariant9-variant11-variant12-variant15-variant16-variant17-filterInvariant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,29:141:99:421,0,2848:61,51,15,14
chr1	144922583	.	G	A	2290.83	PASS	AC=1;AF=0.5;AN=2;DP=6341;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:80,62:142:99:1338,0,1913:37,43,28,34
chr1	144923576	.	A	C	152.14	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=5.892;FractionInformativeReads=1;MQ=60;MQRankSum=-1.348;QD=3.38;ReadPosRankSum=0.156;SOR=0.094;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,9:45:99:180,0,1330:33,3,7,2
chr1	144923823	.	TAGGAAGAAACGGCA	T	2299.16	PASS	AC=2;AF=0.761;AN=2;DP=6057;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:4786,330,0:0,0,36,72
chr1	144923887	.	T	A	563.43	PASS	AC=1;AF=0.5;AN=2;DP=1220;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant12-variant15-variant16-variant18-variant20-variant22-variant25-variant27-variant28-variant29-filterInvariant35-variant38-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,13:61:99:317,0,1469:13,35,2,11
chr1	144930571	.	C	A	842.96	PASS	AC=1;AF=0.5;AN=2;DP=3282;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,40:65:99:1183,0,603:15,10,29,11
chr1	144930596	.	C	A	1061.8	PASS	AC=1;AF=0.5;AN=2;DP=4255;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:37,53:90:99:1318,0,806:19,18,35,18
chr1	144930940	.	T	C	3408.15	PASS	AC=1;AF=0.5;AN=2;DP=10589;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:124,114:238:99:3135,0,3037:54,70,55,59
chr1	144931330	.	C	T	1867.03	PASS	AC=1;AF=0.5;AN=2;DP=13290;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:166,155:321:99:4257,0,4085:79,87,73,82
chr1	144931392	.	G	A	1785.93	PASS	AC=1;AF=0.5;AN=2;DP=12111;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:160,132:292:99:3115,0,3954:81,79,58,74
chr1	144931727	.	G	A	1221.25	PASS	AC=1;AF=0.5;AN=2;DP=8283;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,118:228:99:2887,0,3030:48,62,49,69
chr1	144931873	.	C	G	2611.39	PASS	AC=1;AF=0.5;AN=2;DP=5542;MQ=60;set=variant-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:143,69:212:99:1423,0,3785:71,72,39,30
chr1	144932086	.	G	C	2510.74	PASS	AC=1;AF=0.5;AN=2;DP=10396;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:97,97:194:99:3367,0,2599:48,49,44,53
chr1	144932088	.	A	C	1162.92	PASS	AC=1;AF=0.5;AN=2;DP=195;FS=0.589;FractionInformativeReads=0.99;MQ=60;MQRankSum=1.974;QD=5.96;ReadPosRankSum=-1.569;SOR=0.787;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:138,55:193:99:1191,0,5123:66,72,25,30
chr1	144932151	.	G	T	637.43	PASS	AC=1;AF=0.5;AN=2;DP=7247;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:153,39:192:99:802,0,4166:77,76,18,21
chr1	144932196	.	TTCCGGCTCTGC	T	5067.21	PASS	AC=1;AF=0.5;AN=2;DP=5698;MQ=60;set=variant-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:169,50:219:99:1631,0,7023:92,77,25,25
chr1	144932208	.	G	A	5082	PASS	AC=1;AF=0.5;AN=2;DP=5424;MQ=60;set=variant-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,51:214:99:1682,0,6895:88,75,26,25
chr1	144932220	.	G	T	4824.86	PASS	AC=1;AF=0.5;AN=2;DP=5579;MQ=60;set=variant-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:183,54:237:99:1668,0,7204:102,81,28,26
chr1	144932342	.	T	G	2408.08	PASS	AC=1;AF=0.5;AN=2;DP=14777;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:194,191:385:99:4822,0,4712:102,92,101,90
chr1	144932414	.	A	C	2909.87	PASS	AC=1;AF=0.5;AN=2;DP=13330;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:181,184:365:99:7176,0,7937:82,99,92,92
chr1	144932415	.	C	G	2909.87	PASS	AC=1;AF=0.5;AN=2;DP=13271;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:180,185:365:99:7176,0,7937:81,99,94,91
chr1	144945941	.	G	A	789.81	PASS	AC=2;AF=1;AN=2;DP=868;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.542;ReadPosRankSum=-1.735;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,17:18:8:553,8,0:1,0,13,4
chr1	144946183	.	G	A	3969.91	PASS	AC=1;AF=0.5;AN=2;DP=17089;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:187,162:349:99:3895,0,4550:92,95,82,80
chr1	144946403	.	T	C	2271.18	PASS	AC=1;AF=0.5;AN=2;DP=7138;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:79,80:159:99:2147,0,2039:39,40,44,36
chr1	144946510	.	C	T	7390.86	PASS	AC=1;AF=0.943;AN=2;DP=8929;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,152:206:99:4291,0,1145:25,29,82,70
chr1	144946768	.	G	A	1506.56	PASS	AC=1;AF=0.5;AN=2;DP=4629;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:58,48:106:99:1276,0,1893:14,44,15,33
chr1	144946876	.	C	T	400.79	PASS	AC=1;AF=0.5;AN=2;DP=699;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:351,0,1113:1,8,0,9
chr1	144951973	.	T	C	4189.54	PASS	AC=1;AF=0.5;AN=2;DP=8820;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:76,115:191:99:2851,0,1787:50,26,68,47
chr1	144952003	.	T	C	449.41	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=774;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:213,35:248:99:346,0,5354:122,91,18,17
chr1	144952078	.	C	A	2498.81	PASS	AC=1;AF=0.5;AN=2;DP=11632;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:201,72:273:99:1460,0,5055:96,105,38,34
chr1	144952207	.	C	T	243.64	PASS	AC=1;AF=0.5;AN=2;DP=4179;set=variant-filterInvariant4-variant5-variant7-variant8-variant9-filterInvariant11-filterInvariant12-filterInvariant14-filterInvariant15-variant17-variant18-filterInvariant21-variant22-filterInvariant23-filterInvariant24-variant25-variant26-variant28-variant31-variant33-filterInvariant34-filterInvariant35-variant36-variant37-variant39-filterInvariant41-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:130,21:151:99:168,0,3370:45,85,7,14
chr1	144952220	.	C	T	835.11	PASS	AC=1;AF=0.5;AN=2;DP=5405;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,35:117:99:735,0,2072:26,56,10,25
chr1	144994658	.	C	A	4865.19	PASS	AC=1;AF=0.5;AN=2;DP=20914;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:271,192:463:99:4597,0,7411:159,112,124,68
chr1	144994861	.	C	T	11380	PASS	AC=1;AF=0.58;AN=2;DP=26573;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:87,459:546:99:13145,0,1128:37,50,214,245
chr1	144994902	.	G	A	1990.56	PASS	AC=1;AF=0.5;AN=2;DP=15939;MQ=60;set=variant2-filterInvariant7-filterInvariant9-filterInvariant10-variant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant25-filterInvariant26-filterInvariant28-variant29-variant30-filterInvariant32-variant33-filterInvariant37-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:455,71:526:99:721,0,13399:193,262,34,37
chr1	144995056	.	C	A	789.32	PASS	AC=1;AF=0.5;AN=2;DP=380;FS=1.047;FractionInformativeReads=0.997;MQ=60;MQRankSum=4.291;QD=2.08;ReadPosRankSum=-0.85;SOR=0.783;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:312,67:379:99:818,0,8301:133,179,27,40
chr1	144995123	.	A	G	583.62	PASS	AC=1;AF=0.5;AN=2;DP=191;FS=5.093;FractionInformativeReads=0.995;MQ=60;MQRankSum=-0.898;QD=3.06;ReadPosRankSum=1.222;SOR=1.243;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:157,33:190:99:612,0,4499:55,102,8,25
chr1	144995209	.	G	A	111.26	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.047;QD=1.77;ReadPosRankSum=0.461;SOR=0.588;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:53,10:63:99:139,0,1818:16,37,3,7
chr1	144995219	.	G	A	42.67	PASS	AC=1;AF=0.5;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=filterInvariant23-filterInvariant32-variant34-variant35-filterInvariant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,10:59:99:192,0,1592:15,34,4,6
chr1	145013802	.	T	G	1096.58	PASS	AC=2;AF=1;AN=2;DP=1505;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,18:19:11:594,11,0:1,0,12,6
chr1	145014053	.	T	C	197.04	PASS	AC=1;AF=0.5;AN=2;DP=6835;MQ=60;set=filterInvariant2-variant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-variant9-filterInvariant10-variant11-variant12-variant14-variant18-variant19-variant20-filterInvariant21-variant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant31-variant32-variant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-variant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:176,31:207:99:224,0,4764:82,94,15,16
chr1	145014103	.	G	C	1601.75	PASS	AC=1;AF=0.5;AN=2;DP=6959;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:87,69:156:99:1780,0,2400:42,45,33,36
chr1	145014186	.	GAA	G,GA,GAAA	1305.56	PASS	AC=1,0,0;AF=0.257,0.135,0.108;AN=2;DP=4502;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:98:99:39,40,10,9
chr1	145014210	.	G	A	1593.67	PASS	AC=1;AF=0.5;AN=2;DP=5262;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-filterInvariant36-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,37:126:99:1097,0,2679:55,34,19,18
chr1	145014218	.	G	A	1686.75	PASS	AC=1;AF=0.5;AN=2;DP=4032;MQ=60;set=variant-filterInvariant2-variant3-variant4-filterInvariant6-variant8-filterInvariant9-variant10-variant12-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant20-variant21-variant27-variant28-variant29-variant30-variant35-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:113,21:134:99:340,0,4351:65,48,11,10
chr1	145014263	.	C	T	2250.11	PASS	AC=1;AF=0.5;AN=2;DP=7609;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:103,67:170:99:1519,0,2436:55,48,34,33
chr1	145014394	.	C	T	969.97	PASS	AC=1;AF=0.5;AN=2;DP=2997;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,32:66:99:1114,0,1880:6,28,5,27
chr1	145014411	.	T	C	759.71	PASS	AC=1;AF=0.5;AN=2;DP=2272;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:909,0,1632:4,21,3,17
chr1	145014436	.	G	A	135.35	PASS	AC=1;AF=0.5;AN=2;DP=504;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant13-variant14-variant19-variant20-variant24-variant26-variant27-variant30-filterInvariant32-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,5:31:99:125,0,2154:4,22,0,5
chr1	145015601	.	T	G	73.93	PASS	AC=1;AF=0.5;AN=2;DP=570;FractionInformativeReads=1;MQ=60;set=variant2-variant11-filterInvariant15-variant16-filterInvariant18-filterInvariant20-variant24-variant28-variant31-variant32-variant33-filterInvariant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,4:25:87:87,0,730:17,4,4,0
chr1	145015657	.	G	C	152.38	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=3.023;FractionInformativeReads=1;MQ=60;MQRankSum=1.205;QD=2.31;ReadPosRankSum=-2.535;SOR=0.291;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,12:66:99:181,0,1548:38,16,7,5
chr1	145015844	.	C	T	734.05	PASS	AC=1;AF=0.5;AN=2;DP=344;FractionInformativeReads=1;MQ=60;set=variant13-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:166,28:194:99:232,0,4697:92,74,14,14
chr1	145015877	.	G	T	711.74	PASS	AC=1;AF=0.5;AN=2;DP=4367;FractionInformativeReads=1;MQ=60;set=variant-filterInvariant2-variant3-filterInvariant6-variant8-variant9-filterInvariant10-variant12-filterInvariant15-variant16-variant17-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant33-variant35-variant38-filterInvariant39-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:178,31:209:99:320,0,4785:98,80,15,16
chr1	145016020	.	T	G	3447.14	PASS	AC=2;AF=0.989;AN=2;DP=5351;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:5020,432,0:0,0,53,91
chr1	145016032	.	C	CA	264.95	PASS	AC=1;AF=0.5;AN=2;DP=3889;MQ=60;set=variant-variant2-variant4-variant5-variant6-filterInvariant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant15-filterInvariant16-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,14:108:75:75,0,2592:35,59,5,9
chr1	145016035	.	A	C	225.36	PASS	AC=1;AF=0.5;AN=2;DP=1871;MQ=60;set=variant-variant3-filterInvariant4-variant8-filterInvariant12-filterInvariant14-variant16-variant17-filterInvariant18-filterInvariant20-variant28-variant29-filterInvariant30-variant35-variant38-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:105,17:122:99:145,0,3153:37,68,6,11
chr1	145017784	.	CTT	CT,C	159.27	PASS	AC=2,0;AF=0.636,0.091;AN=2;DP=1028;set=Intersection	GT:DP:GQ:SB	1/1:20:60:0,0,8,12
chr1	145017822	.	C	CTCCTTCCTTCCCTCCCCTCCCCTCCCTTCCTTCCTTCCT,CTCCTTCCTTCCCTCCCCTCCCCTCCCTTCCTTCCT,CTCCTTCCTTCCCTCCCCTCCCCTCCCTTCCT,CTCCTTCCTTCCCTCCCCCCCCCTCCCTCCCTTCCTTCCT,CTCCTTCCTTCCCTCCCCTCCCCTCCCTCCCTTCCTTCCT,CTCCTTCCTTCCCTCCCCTCCCCTCCCCTCCCTTCCTTCCT	396.15	PASS	AC=0,1,0,0,0,0;AF=0.063,0.344,0.031,0.031,0.094,0.031;AN=2;DP=224;set=variant-variant2-variant5-variant7-variant10-variant12-variant15-variant17-variant23-variant26-variant28-variant29-variant32-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:8:77:1,2,0,5
chr1	145018023	.	G	T	1059.8	PASS	AC=1;AF=0.5;AN=2;DP=5442;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,54:108:99:1325,0,1272:24,30,24,30
chr1	145021024	.	G	C	716.34	PASS	AC=1;AF=0.5;AN=2;DP=3298;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:957,0,1145:30,9,23,9
chr1	145021034	.	C	A	100.24	PASS	AC=1;AF=0.5;AN=2;DP=2780;MQ=60;set=filterInvariant2-variant3-filterInvariant6-variant7-variant9-variant10-variant11-filterInvariant12-variant14-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-variant32-variant33-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:70,15:85:99:232,0,2988:51,19,11,4
chr1	145021089	.	G	A	66.5	PASS	AC=1;AF=0.5;AN=2;DP=7472;MQ=60;set=filterInvariant-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:158,26:184:99:306,0,4630:110,48,18,8
chr1	145021265	.	A	G	191.75	PASS	AC=1;AF=0.5;AN=2;DP=5751;MQ=60;set=filterInvariant2-variant3-filterInvariant4-filterInvariant6-variant7-variant9-filterInvariant10-variant11-filterInvariant14-variant18-variant19-variant20-filterInvariant21-variant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-variant32-variant33-variant35-filterInvariant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:110,56:166:99:1418,0,3297:35,75,18,38
chr1	145038736	.	C	G	476.74	PASS	AC=1;AF=0.5;AN=2;DP=1898;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:311,0,601:17,4,9,3
chr1	145038815	.	A	G	3081.99	PASS	AC=2;AF=0.864;AN=2;DP=4927;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3241,294,0:0,0,65,33
chr1	145038952	.	C	T	2089.6	PASS	AC=1;AF=0.5;AN=2;DP=10232;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:145,122:267:99:3107,0,3789:68,77,62,60
chr1	145039026	.	T	C	540.29	PASS	AC=1;AF=0.5;AN=2;DP=9933;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:225,35:260:99:260,0,5946:110,115,15,20
chr1	145039562	.	C	T	833.96	PASS	AC=1;AF=0.5;AN=2;DP=8007;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:98,60:158:99:1334,0,2614:61,37,38,22
chr1	145039633	.	C	T	476.87	PASS	AC=1;AF=0.5;AN=2;DP=9102;MQ=60;set=variant-filterInvariant2-variant3-filterInvariant4-filterInvariant6-variant8-filterInvariant9-variant10-filterInvariant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant27-variant29-filterInvariant33-filterInvariant35-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:234,91:325:99:1932,0,6031:135,99,57,34
chr1	145039744	.	C	A	394.42	PASS	AC=1;AF=0.5;AN=2;DP=2515;MQ=60;set=filterInvariant34-filterInvariant35-filterInvariant39-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:369,80:449:99:1182,0,9676:184,185,40,40
chr1	145039831	.	A	G	2549.09	PASS	AC=1;AF=0.5;AN=2;DP=19912;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:291,129:420:99:2968,0,7913:141,150,73,56
chr1	145039866	.	A	G	4713.77	PASS	AC=1;AF=0.5;AN=2;DP=20613;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:231,194:425:99:4748,0,5853:112,119,99,95
chr1	145040039	.	G	C	2225.55	PASS	AC=1;AF=0.5;AN=2;DP=9406;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:139,96:235:99:2289,0,3585:52,87,34,62
chr1	145040054	.	A	G	1520.53	PASS	AC=1;AF=0.5;AN=2;DP=7552;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:117,73:190:99:1766,0,3631:45,72,28,45
chr1	145040063	.	CT	C	1540.04	PASS	AC=1;AF=0.5;AN=2;DP=5186;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-filterInvariant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-filterInvariant34-variant36-variant38-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,40:161:99:1086,0,4737:44,77,14,26
chr1	145074919	.	A	G	677.17	PASS	AC=1;AF=0.5;AN=2;DP=3278;MQ=60;set=variant5-variant6-filterInvariant8-filterInvariant20-filterInvariant21-filterInvariant24-filterInvariant27-filterInvariant30-variant31-filterInvariant34-filterInvariant35-filterInvariant40-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:133,70:203:99:1475,0,3580:80,53,41,29
chr1	145074939	.	T	C	2060.97	PASS	AC=1;AF=0.5;AN=2;DP=11990;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:143,97:240:99:2477,0,3730:83,60,57,40
chr1	145075129	.	A	G	247.01	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=295;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=3.607;QD=0.84;ReadPosRankSum=0.984;SOR=0.677;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:258,37:295:99:275,0,7068:98,160,14,23
chr1	145075208	.	T	A	448.24	PASS	AC=1;AF=0.5;AN=2;DP=5363;MQ=60;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant26-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant36-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,36:109:99:827,0,2225:23,50,12,24
chr1	145075234	.	C	T	645.58	PASS	AC=1;AF=0.5;AN=2;DP=1523;MQ=60;set=variant4-variant8-variant10-variant13-variant14-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant23-filterInvariant25-filterInvariant28-variant30-filterInvariant31-filterInvariant37-filterInvariant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:64,9:73:99:132,0,2089:16,48,2,7
chr1	145075519	.	G	C	181.35	PASS	AC=1;AF=0.5;AN=2;DP=2150;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,11:54:99:161,0,1348:22,21,7,4
chr1	145075683	.	C	T	2480.3	PASS	AC=1;AF=0.5;AN=2;DP=13825;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:131,118:249:99:2704,0,3230:80,51,66,52
chr1	145075775	.	G	A,T	2362.17	PASS	AC=0,1;AF=0.464,0.036;AN=2;DP=7754;MQ=60;set=variant4-filterInvariant9-filterInvariant13-variant14-filterInvariant18-filterInvariant21-filterInvariant23-filterInvariant25-filterInvariant26-filterInvariant30-filterInvariant37-filterInvariant39-filterInvariant41-filterInvariant42	GT:DP:GQ:SB	0/2:480:99:229,193,29,29
chr1	145075854	.	G	C	6694.88	PASS	AC=1;AF=0.5;AN=2;DP=26249;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:301,214:515:99:5124,0,7887:161,140,109,105
chr1	145075903	.	C	T	2896.28	PASS	AC=1;AF=0.5;AN=2;DP=18036;MQ=60;set=variant-filterInvariant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-variant8-filterInvariant9-filterInvariant10-variant12-filterInvariant14-variant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant24-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant34-variant35-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:376,90:466:99:1451,0,12156:183,193,45,45
chr1	145075923	.	C	T	1996.84	PASS	AC=1;AF=0.5;AN=2;DP=19954;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-filterInvariant27-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant33-filterInvariant34-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:309,133:442:99:2841,0,9567:150,159,64,69
chr1	145076016	.	C	T	983.03	PASS	AC=1;AF=0.5;AN=2;DP=918;MQ=60;set=variant10-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:423,43:466:99:533,0,19777:203,220,22,21
chr1	145076041	.	C	T	107.95	PASS	AC=1;AF=0.5;AN=2;DP=8301;MQ=60;set=filterInvariant-variant4-filterInvariant9-variant10-variant13-variant14-filterInvariant19-filterInvariant23-filterInvariant25-filterInvariant26-filterInvariant28-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:415,51:466:99:698,0,19352:195,220,24,27
chr1	145076144	.	C	T	524.44	PASS	AC=1;AF=0.5;AN=2;DP=895;FractionInformativeReads=1;MQ=60;set=filterInvariant10-variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:253,42:295:99:871,0,10006:85,168,16,26
chr1	145076156	.	C	T	1088.84	PASS	AC=1;AF=0.5;AN=2;DP=4848;MQ=60;set=variant4-filterInvariant9-filterInvariant10-variant13-variant14-filterInvariant21-filterInvariant23-filterInvariant25-filterInvariant26-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant36-filterInvariant37-filterInvariant39-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:215,41:256:99:900,0,8998:75,140,15,26
chr1	145076241	.	C	T	279.8	PASS	AC=1;AF=0.5;AN=2;DP=3423;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,23:69:99:640,0,1504:9,37,4,19
chr1	145076284	.	C	G	561.6	PASS	AC=1;AF=0.625;AN=2;DP=1767;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,22:30:99:717,0,251:0,8,4,18
chr1	145096760	.	T	G	459.17	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.43;QD=12.75;ReadPosRankSum=-1.48;SOR=0.559;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:487,0,618:8,12,7,9
chr1	145103844	.	G	A	617.51	PASS	AC=1;AF=0.5;AN=2;DP=4769;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:76,26:102:99:597,0,2363:56,20,19,7
chr1	145103947	.	T	C	1399.73	PASS	AC=1;AF=0.5;AN=2;DP=13325;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:220,94:314:99:2268,0,5225:108,112,44,50
chr1	145104049	.	TTAAG	T	734.12	PASS	AC=1;AF=0.5;AN=2;DP=162;FS=2.939;FractionInformativeReads=0.963;MQ=60;MQRankSum=-1.702;QD=4.53;ReadPosRankSum=1.402;SOR=1.002;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:128,28:156:99:771,0,5692:41,87,7,21
chr1	145104052	.	AGT	A	966.84	PASS	AC=1;AF=0.5;AN=2;DP=5641;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,54:142:99:1948,0,3442:21,67,16,38
chr1	145104075	.	G	A	152.93	PASS	AC=1;AF=0.5;AN=2;DP=1075;MQ=60;set=filterInvariant5-variant6-variant8-variant21-filterInvariant24-variant27-filterInvariant30-variant31-variant34-filterInvariant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:89,20:109:99:348,0,2688:22,67,6,14
chr1	145109456	.	C	T	863.17	PASS	AC=1;AF=0.5;AN=2;DP=5344;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,33:117:99:772,0,2473:58,26,25,8
chr1	145109468	.	A	G	5854.28	PASS	AC=2;AF=0.955;AN=2;DP=6598;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:5738,450,0:0,0,104,45
chr1	145109493	.	C	T	788.41	PASS	AC=1;AF=0.5;AN=2;DP=6568;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-filterInvariant34-variant35-variant38-filterInvariant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:162,41:203:99:737,0,4578:102,60,27,14
chr1	145109549	.	G	T	1247.91	PASS	AC=1;AF=0.5;AN=2;DP=14134;MQ=60;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:265,59:324:99:865,0,7257:149,116,36,23
chr1	145109583	.	C	A	4525.34	PASS	AC=1;AF=0.5;AN=2;DP=15878;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:208,160:368:99:3892,0,5009:107,101,82,78
chr1	145109661	.	G	A	1647.67	PASS	AC=1;AF=0.5;AN=2;DP=14434;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:244,77:321:99:1458,0,6714:107,137,30,47
chr1	145109809	.	T	A	174.88	PASS	AC=1;AF=0.5;AN=2;DP=1366;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,12:45:99:378,0,1232:2,31,0,12
chr1	145112284	.	CCG	C	232.12	PASS	AC=1;AF=0.5;AN=2;DP=3146;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:51,17:68:99:594,0,3211:43,8,12,5
chr1	145112287	.	T	C	388.25	PASS	AC=1;AF=0.5;AN=2;DP=3080;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,10:68:99:199,0,2071:46,12,9,1
chr1	145112288	.	G	GCA	259.66	PASS	AC=1;AF=0.5;AN=2;DP=3258;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,18:68:99:627,0,3208:42,8,13,5
chr1	145112313	.	T	C	678.15	PASS	AC=1;AF=0.5;AN=2;DP=5034;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,17:109:99:340,0,3178:72,20,14,3
chr1	145112414	.	T	C	2034.63	PASS	AC=1;AF=0.5;AN=2;DP=16742;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:336,70:406:99:1828,0,15788:189,147,41,29
chr1	145112420	.	C	T	1691.25	PASS	AC=1;AF=0.5;AN=2;DP=16981;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:306,112:418:99:1975,0,9010:172,134,61,51
chr1	145112428	.	C	T	2054.79	PASS	AC=1;AF=0.5;AN=2;DP=17834;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:362,72:434:99:1809,0,16537:199,163,38,34
chr1	145112485	.	C	T	1028.37	PASS	AC=1;AF=0.5;AN=2;DP=16240;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:332,65:397:99:731,0,8537:147,185,27,38
chr1	145115658	.	TATTTTTAA	T	1084.54	PASS	AC=1;AF=0.5;AN=2;DP=3969;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:71,19:90:99:584,0,3891:57,14,15,4
chr1	145115681	.	C	T	205.32	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=118;FS=1.21;FractionInformativeReads=1;MQ=60;MQRankSum=1.478;QD=1.74;ReadPosRankSum=-1.26;SOR=0.99;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:103,15:118:99:234,0,4818:74,29,12,3
chr1	145115810	.	A	G	3980.04	PASS	AC=1;AF=0.5;AN=2;DP=14917;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:176,137:313:99:3916,0,4486:81,95,64,73
chr1	145115820	.	T	C	1185.79	PASS	AC=1;AF=0.5;AN=2;DP=13880;MQ=60;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:255,55:310:99:750,0,11004:115,140,25,30
chr1	145139088	.	C	CG	868.97	PASS	AC=2;AF=1;AN=2;DP=973;FS=0;MQRankSum=-0.98;ReadPosRankSum=-1.281;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:99:1263,102,0:0,0,32,0
chr1	145209152	.	GGGC	G	603.92	PASS	AC=1;AF=0.5;AN=2;DP=3734;set=variant3-variant5-filterInvariant6-variant9-variant10-variant12-variant16-variant19-variant20-variant21-filterInvariant22-variant24-variant28-variant31-filterInvariant37-variant39-filterInvariant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:125,21:146:99:506,0,5128:61,64,6,15
chr1	145209612	.	GCCCCGCCAACCGCCGGGGTT	G,GCCCCGCCAACCGCCGGGGTTCCCCGCCAACCGCCGGGGTT	6540.38	PASS	AC=2,0;AF=0.648,0.023;AN=2;DP=14035;set=Intersection	GT:DP:GQ:SB	1/1:162:99:7,0,81,74
chr1	145209819	.	C	T	63.81	PASS	AC=1;AF=0.5;AN=2;DP=9681;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-filterInvariant9-filterInvariant10-filterInvariant11-variant12-filterInvariant15-filterInvariant16-filterInvariant17-variant19-variant20-variant21-filterInvariant22-filterInvariant25-filterInvariant26-filterInvariant27-variant28-variant31-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:199,33:232:99:659,0,4999:99,100,6,27
chr1	145209869	.	A	C	883.92	PASS	AC=1;AF=0.5;AN=2;DP=13508;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:192,70:262:99:2410,0,9086:98,94,46,24
chr1	145209870	.	A	G	883.92	PASS	AC=1;AF=0.5;AN=2;DP=13585;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:194,72:266:99:2410,0,9086:98,96,47,25
chr1	145273431	.	A	G	2053.98	PASS	AC=1;AF=0.5;AN=2;DP=14303;set=variant-variant4-filterInvariant11-filterInvariant13-filterInvariant14-filterInvariant18-filterInvariant22-variant23-filterInvariant26-filterInvariant27-variant29-variant30-filterInvariant32-filterInvariant33-variant34-filterInvariant36-filterInvariant37-variant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:525,124:649:99:1644,0,14223:194,331,47,77
chr1	145273520	.	G	A	766.97	PASS	AC=1;AF=0.5;AN=2;DP=7788;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,60:175:99:1567,0,3829:17,98,12,48
chr1	145281247	.	T	A	765.85	PASS	AC=1;AF=0.5;AN=2;DP=4926;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,48:138:99:1065,0,2401:85,5,40,8
chr1	145281413	.	G	A	1706.39	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1070;FS=0.742;FractionInformativeReads=1;MQ=40.27;MQRankSum=-1.245;QD=1.59;ReadPosRankSum=-5.713;SOR=0.819;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:903,167:1070:99:1735,0,23325:481,422,94,73
chr1	145281543	.	C	T	3315.7	PASS	AC=1;AF=0.5;AN=2;DP=39050;set=variant-variant2-filterInvariant3-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-filterInvariant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:489,234:723:99:5202,0,13450:196,293,102,132
chr1	145282093	.	G	A	1122.05	PASS	AC=1;AF=0.5;AN=2;DP=7768;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,40:160:99:927,0,3433:38,82,10,30
chr1	145287302	.	G	A	38.3	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=2;FS=0;FractionInformativeReads=1;MQ=28.5;QD=19.15;SOR=2.303;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:67,6,0:0,0,2,0
chr1	145290317	.	C	T	211.39	PASS	AC=1;AF=0.5;AN=2;DP=624;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant28-filterInvariant29-filterInvariant30-variant32-variant36-variant37-filterInvariant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,4:20:89:89,0,751:13,3,4,0
chr1	145290320	.	C	T	359.98	PASS	AC=1;AF=0.5;AN=2;DP=981;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:387,0,263:7,1,10,2
chr1	145290346	.	A	G	746.92	PASS	AC=1;AF=0.5;AN=2;DP=1597;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:620,0,371:10,4,12,6
chr1	145290351	.	A	G	40.15	PASS	AC=1;AF=0.5;AN=2;DP=1149;set=filterInvariant2-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant17-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-filterInvariant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,10:36:99:202,0,1016:18,8,7,3
chr1	145290377	.	T	C	303.2	PASS	AC=1;AF=0.5;AN=2;DP=2605;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:801,0,623:16,8,19,12
chr1	145290401	.	T	G	730.04	PASS	AC=1;AF=0.5;AN=2;DP=3594;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,13:82:99:322,0,3061:40,29,10,3
chr1	145290409	.	G	A	733.04	PASS	AC=1;AF=0.5;AN=2;DP=4040;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-filterInvariant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,17:92:99:380,0,3178:42,33,11,6
chr1	145290498	.	T	G	290.17	PASS	AC=1;AF=0.5;AN=2;DP=4641;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant9-filterInvariant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant19-variant20-filterInvariant21-variant22-variant23-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-variant30-filterInvariant31-filterInvariant32-variant33-variant35-variant36-filterInvariant37-filterInvariant38-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,20:109:99:300,0,2171:40,49,11,9
chr1	145290535	.	C	T	421.15	PASS	AC=1;AF=0.5;AN=2;DP=3710;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-filterInvariant21-variant22-filterInvariant23-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-variant32-variant33-filterInvariant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,18:81:99:319,0,1626:26,37,8,10
chr1	145290547	.	C	A	346.57	PASS	AC=1;AF=0.5;AN=2;DP=3186;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-filterInvariant21-variant22-variant23-variant25-variant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,17:73:99:352,0,1496:22,34,7,10
chr1	145290560	.	T	C	245.75	PASS	AC=1;AF=0.5;AN=2;DP=2551;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant27-variant29-filterInvariant30-variant31-filterInvariant32-variant33-filterInvariant35-variant36-filterInvariant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,13:51:99:274,0,1201:12,26,4,9
chr1	145290562	.	G	A	38.97	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=50;FS=0;FractionInformativeReads=1;MQ=55.68;MQRankSum=2.314;QD=0.78;ReadPosRankSum=1.687;SOR=0.426;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:44,6:50:67:67,0,1518:13,31,2,4
chr1	145290583	.	G	C	217	PASS	AC=1;AF=0.5;AN=2;DP=1296;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-filterInvariant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant16-variant17-filterInvariant20-variant22-filterInvariant25-variant26-filterInvariant29-variant31-variant33-filterInvariant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,8:30:99:201,0,842:3,19,1,7
chr1	145293012	.	G	A	117.78	PASS	AC=1;AF=0.5;AN=2;DP=3090;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,11:74:70:70,0,1713:39,24,6,5
chr1	145293128	.	C	T	121.27	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=165;FS=5.625;FractionInformativeReads=1;MQ=58.02;MQRankSum=-2.771;QD=0.73;ReadPosRankSum=-0.095;SOR=0.938;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:141,24:165:99:150,0,3757:64,77,14,10
chr1	145293425	.	C	A	891.1	PASS	AC=1;AF=0.5;AN=2;DP=18718;set=variant-filterInvariant2-filterInvariant4-variant5-filterInvariant6-variant8-variant9-filterInvariant10-variant11-filterInvariant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-filterInvariant30-variant32-variant33-filterInvariant34-variant35-variant36-filterInvariant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:399,64:463:99:586,0,11579:236,163,36,28
chr1	145293428	.	G	C	251.85	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2130;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:416,61:477:99:508,0,12190:239,177,39,22
chr1	145293498	.	G	C	2601.15	PASS	AC=1;AF=0.5;AN=2;DP=28882;set=variant-variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-variant33-filterInvariant34-variant35-variant36-filterInvariant37-filterInvariant38-variant39-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:547,97:644:99:1053,0,14700:273,274,45,52
chr1	145293510	.	C	G	1331.77	PASS	AC=1;AF=0.5;AN=2;DP=26773;set=variant-variant2-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-variant32-variant33-filterInvariant34-variant35-variant36-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:556,97:653:99:1018,0,14954:266,290,47,50
chr1	145293566	.	G	A	959.5	PASS	AC=1;AF=0.5;AN=2;DP=19164;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-filterInvariant13-variant14-variant15-variant17-variant18-variant19-variant21-filterInvariant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:402,87:489:99:1329,0,11109:173,229,34,53
chr1	145296207	.	T	C	265.43	PASS	AC=1;AF=0.5;AN=2;DP=1495;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant13-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-filterInvariant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,22:68:99:434,0,1670:42,4,14,8
chr1	145296268	.	C	T,G	1509.06	PASS	AC=0,1;AF=0.389,0.125;AN=2;DP=3885;set=variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant30-variant31-variant33-variant35-variant36-filterInvariant37-variant38-variant39-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/2:152:99:94,34,11,13
chr1	145296372	.	A	G	2101.39	PASS	AC=1;AF=0.558;AN=2;DP=10422;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,189:276:99:5012,0,1807:45,42,92,97
chr1	145296478	.	G	T	1132.06	PASS	AC=1;AF=0.557;AN=2;DP=6617;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,83:187:99:1987,0,2584:40,64,31,52
chr1	145297458	.	G	C	236.6	PASS	AC=1;AF=0.5;AN=2;DP=2141;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,19:69:99:532,0,1567:43,7,19,0
chr1	145297817	.	G	C	2392.12	PASS	AC=1;AF=0.557;AN=2;DP=5067;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:69,61:130:99:1841,0,2059:17,52,11,50
chr1	145298186	.	C	G	367.26	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3454;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:72,23:95:99:401,0,1696:27,45,9,14
chr1	145298220	.	G	A	81.4	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=89;FS=2.718;FractionInformativeReads=1;MQ=27.8;MQRankSum=1.572;QD=0.91;ReadPosRankSum=-1.144;SOR=1.206;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:75,14:89:99:110,0,1868:25,50,3,11
chr1	145298233	.	C	T	65.94	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=84;FS=8.861;FractionInformativeReads=1;MQ=27.66;MQRankSum=-2.046;QD=0.79;ReadPosRankSum=0.246;SOR=0.157;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:70,14:84:94:94,0,1774:20,50,7,7
chr1	145301587	.	G	T	296.19	DRAGENHardSNP	AC=2;AF=0.512;AN=2;DP=1811;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1332,138,0:0,0,45,1
chr1	145301639	.	A	G	474.82	PASS	AC=1;AF=0.5;AN=2;DP=160;FS=3.683;FractionInformativeReads=0.994;MQ=38.66;MQRankSum=-0.294;QD=2.97;ReadPosRankSum=0.739;SOR=0.419;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:123,36:159:99:503,0,3052:84,39,22,14
chr1	145301697	.	C	T	1265.35	PASS	AC=1;AF=0.5;AN=2;DP=14452;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:192,83:275:99:1237,0,4100:93,99,40,43
chr1	145301793	.	A	G	1088.01	PASS	AC=1;AF=0.5;AN=2;DP=9450;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,37:138:99:745,0,3235:33,68,9,28
chr1	145301802	.	C	G	1096.32	PASS	AC=1;AF=0.5;AN=2;DP=8235;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,79:116:99:2634,0,799:13,24,20,59
chr1	145301853	.	C	G	574.01	PASS	AC=2;AF=0.818;AN=2;DP=2530;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:695,63,0:0,0,9,12
chr1	145301887	.	G	A	319.61	PASS	AC=1;AF=0.5;AN=2;DP=1609;set=variant2-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant21-filterInvariant22-variant23-filterInvariant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:244,0,476:5,7,4,3
chr1	145301907	.	A	C	313.59	PASS	AC=1;AF=0.5;AN=2;DP=1577;FractionInformativeReads=1;set=variant2-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:332,0,419:3,8,4,6
chr1	145302505	.	G	C	732.77	PASS	AC=2;AF=1;AN=2;DP=978;FS=0;MQRankSum=0.315;ReadPosRankSum=1.103;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:568,51,0:0,0,12,5
chr1	145302562	.	T	A	214.39	PASS	AC=1;AF=0.5;AN=2;DP=191;FractionInformativeReads=1;set=variant4-variant12-filterInvariant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:429,0,394:8,11,11,9
chr1	145302704	.	A	G	38.98	PASS	AC=1;AF=0.833;AN=2;DP=70;FS=0;FractionInformativeReads=1;set=filterInvariant5-filterInvariant8-filterInvariant16-variant18-filterInvariant22-filterInvariant23-filterInvariant26-variant28-filterInvariant31-filterInvariant35-filterInvariant36-filterInvariant39-filterInvariant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:21:131,0,21:0,1,6,0
chr1	145303971	.	A	G	696.96	PASS	AC=2;AF=0.625;AN=2;DP=6280;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-filterInvariant12-filterInvariant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant24-filterInvariant25-variant26-variant28-variant31-filterInvariant32-filterInvariant34-variant37-variant38-variant39-filterInvariant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3226,330,0:0,0,43,67
chr1	145304153	.	A	G	283	PASS	AC=1;AF=0.5;AN=2;DP=1811;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant8-variant11-variant13-variant14-variant15-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,6:45:74:74,0,1004:15,24,2,4
chr1	145304793	.	C	G	198.59	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=52.06;MQRankSum=0.159;QD=3.42;ReadPosRankSum=0.912;SOR=0.774;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,11:58:99:227,0,1601:11,36,2,9
chr1	145304804	.	A	G	151.92	PASS	AC=1;AF=0.5;AN=2;DP=190;FractionInformativeReads=1;set=variant4-variant12-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:754,0,574:6,17,4,20
chr1	145310197	.	C	T	833.27	PASS	AC=1;AF=0.5;AN=2;DP=3761;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,52:97:99:1063,0,1225:13,32,22,30
chr1	145310932	.	C	A	94.22	PASS	AC=1;AF=0.523;AN=2;DP=850;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant31-variant32-filterInvariant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:71:71,0,283:8,0,3,0
chr1	145310983	.	G	C	1076.85	PASS	AC=2;AF=0.591;AN=2;DP=3396;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1894,165,0:0,0,46,9
chr1	145311785	.	C	G	38.79	PASS	AC=2;AF=0.864;AN=2;DP=427;set=filterInvariant3-filterInvariant12-variant15-variant19-filterInvariant20-filterInvariant21-filterInvariant25-filterInvariant31-filterInvariant34-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	1/1:1,10:11:23:296,23,0:0,1,9,1
chr1	145311828	.	C	G	2543.6	PASS	AC=2;AF=1;AN=2;DP=5991;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:869,81,0:0,0,21,6
chr1	145311885	.	C	A	264.68	PASS	AC=1;AF=0.5;AN=2;DP=92;FS=0;FractionInformativeReads=1;MQ=30.4;MQRankSum=-1.87;QD=2.88;ReadPosRankSum=-2.735;SOR=0.718;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,21:92:99:293,0,1698:43,28,13,8
chr1	145312537	.	G	T	41.83	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=2.884;FractionInformativeReads=1;MQ=31.12;MQRankSum=-2.369;QD=2.32;ReadPosRankSum=-2.251;SOR=2.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,3:18:70:70,0,788:9,6,3,0
chr1	145312540	.	C	G	41.83	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=2.884;FractionInformativeReads=1;MQ=31.12;MQRankSum=-2.488;QD=2.32;ReadPosRankSum=-2.251;SOR=2.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,3:18:70:70,0,788:9,6,3,0
chr1	145312716	.	C	A	57.71	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:26:114,0,26:0,2,2,4
chr1	145323539	.	T	G	297.12	PASS	AC=1;AF=0.5;AN=2;DP=2005;FractionInformativeReads=1;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-variant36-variant37-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:18,31:49:99:784,0,433:18,0,30,1
chr1	145323562	.	C	T	63.05	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=192;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:99,11:110:68:68,0,2795:83,16,10,1
chr1	145323757	.	A	T	3333.93	PASS	AC=1;AF=0.773;AN=2;DP=7976;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:66,191:257:99:4786,0,1226:25,41,58,133
chr1	145325899	.	A	G	70.06	PASS	AC=2;AF=0.979;AN=2;DP=119;FS=0;FractionInformativeReads=1;MQRankSum=0.731;ReadPosRankSum=0.731;set=filterInvariant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant11-filterInvariant12-filterInvariant14-filterInvariant16-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant26-filterInvariant29-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:365,36,0:0,0,5,7
chr1	145328200	.	T	G	45.95	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=14;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:99,12,0:0,0,2,2
chr1	145354441	.	A	G	50.99	DRAGENHardSNP	AC=1;AF=0.938;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQRankSum=-0.727;ReadPosRankSum=0.727;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:25:72,0,25:0,1,0,3
chr1	145365332	.	G	A	2008.06	PASS	AC=1;AF=0.5;AN=2;DP=175;FS=0.571;FractionInformativeReads=1;MQ=36.19;MQRankSum=-0.22;QD=11.47;ReadPosRankSum=2.928;SOR=0.61;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,94:175:99:2036,0,1727:50,31,56,38
chr1	145365506	.	G	T	679.23	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=2194;FS=0;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:1,52:53:99:1487,113,0:0,1,7,45
chr1	145366418	.	G	C	105.36	PASS	AC=1;AF=0.533;AN=2;DP=317;FractionInformativeReads=1;set=variant3-filterInvariant4-variant6-filterInvariant7-variant8-variant12-variant13-variant22-variant24-filterInvariant32-variant33-filterInvariant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:82:82,0,196:2,6,3,1
chr1	145367014	.	G	A	285.99	PASS	AC=2;AF=0.595;AN=2;DP=766;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:666,63,0:0,0,15,6
chr1	145367094	.	C	T	36.22	PASS	AC=1;AF=0.5;AN=2;DP=1921;set=filterInvariant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant12-variant13-variant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,10:48:99:213,0,884:22,16,7,3
chr1	145367178	.	T	G	68.77	PASS	AC=1;AF=0.5;AN=2;DP=1569;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,11:35:99:244,0,584:9,15,4,7
chr1	145367426	.	G	T	36.52	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=53.69;MQRankSum=-1.026;QD=9.13;ReadPosRankSum=-1.026;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:37:65,0,37:1,1,2,0
chr1	145367719	.	G	A	241.46	PASS	AC=1;AF=0.5;AN=2;DP=44;FractionInformativeReads=1;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:129,0,282:7,2,4,1
chr1	145368473	.	G	C	865.96	PASS	AC=1;AF=0.5;AN=2;DP=26846;set=filterInvariant-filterInvariant2-variant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-variant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:477,92:569:99:1104,0,13013:284,193,65,27
chr1	145368518	.	C	T	1449.22	PASS	AC=1;AF=0.5;AN=2;DP=37792;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-variant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:608,155:763:99:1604,0,16019:328,280,83,72
chr1	145368555	.	C	T	1962.92	PASS	AC=1;AF=0.5;AN=2;DP=792;FS=0;FractionInformativeReads=0.997;MQ=50.71;MQRankSum=4.228;QD=2.48;ReadPosRankSum=-2.689;SOR=0.81;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:651,139:790:99:1991,0,16794:333,318,75,64
chr1	145368808	.	C	T	367.16	PASS	AC=1;AF=0.5;AN=2;DP=169;FractionInformativeReads=1;set=variant4-filterInvariant12-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:774,0,974:5,26,0,22
chr1	145438578	.	C	A	811.53	PASS	AC=2;AF=1;AN=2;DP=917;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.545;ReadPosRankSum=-1.139;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:563,54,0:0,0,12,6
chr1	145439653	.	A	T	1604.86	PASS	AC=1;AF=0.5;AN=2;DP=105;FS=7.907;FractionInformativeReads=1;MQ=60;MQRankSum=-1.586;QD=15.28;ReadPosRankSum=1.292;SOR=0.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,63:105:99:1633,0,1037:15,27,32,31
chr1	145441620	.	T	C	9188.9	PASS	AC=1;AF=0.943;AN=2;DP=10161;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:98,124:222:99:2924,0,2497:49,49,65,59
chr1	145441840	.	TA	T	6736.82	PASS	AC=1;AF=0.943;AN=2;DP=6432;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:68,78:146:99:2472,0,2098:39,29,43,35
chr1	145442254	.	G	C	6977.94	PASS	AC=1;AF=0.955;AN=2;DP=5774;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:75,78:153:99:2894,0,4031:27,48,26,52
chr1	145442264	.	T	A	6549.05	PASS	AC=1;AF=0.955;AN=2;DP=5145;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:66,71:137:99:2739,0,3919:19,47,22,49
chr1	145456731	.	G	C	372.57	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0;FractionInformativeReads=0.872;MQ=60;MQRankSum=-1.759;QD=3.96;ReadPosRankSum=1.629;SOR=0.776;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,26:82:99:401,0,1544:25,31,11,15
chr1	145456908	.	G	T	305.61	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.051;QD=21.83;ReadPosRankSum=0.778;SOR=0.307;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:334,0,141:0,4,2,8
chr1	145457677	.	A	AG	753.87	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0;FractionInformativeReads=0.922;MQ=60;MQRankSum=-2.208;QD=9.79;ReadPosRankSum=-0.133;SOR=0.605;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,33:71:99:791,0,964:13,25,12,21
chr1	145459902	.	G	A	816.46	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=6.905;FractionInformativeReads=1;MQ=60;MQRankSum=0.521;QD=12.76;ReadPosRankSum=-2.321;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:845,0,1009:18,18,9,19
chr1	145460000	.	A	G	698.41	PASS	AC=1;AF=0.5;AN=2;DP=97;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,15:49:99:430,0,969:17,17,10,5
chr1	145471549	.	A	C	190.46	PASS	AC=2;AF=1;AN=2;DP=546;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.552;ReadPosRankSum=-0.822;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:358,36,0:0,0,7,5
chr1	145472558	.	GCCC	G,GCC,GC	1437.38	PASS	AC=0,0,1;AF=0.136,0.17,0.614;AN=2;DP=3308;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:67:99:21,12,23,11
chr1	145474626	.	A	C	610.64	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=6169;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:173,44:217:99:184,0,7350:37,136,44,0
chr1	145474634	.	A	C	131.01	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3395;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:167,33:200:99:170,0,7375:31,136,33,0
chr1	145499904	.	GT	G,GTT	97.27	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=1440;MQ=60;set=filterInvariant5-filterInvariant6-filterInvariant9-filterInvariant10-filterInvariant20-filterInvariant39-variant41-filterInvariant44	GT:DP:GQ:SB	0/2:117:99:15,44,24,34
chr1	145500921	.	C	CTA	15988.8	PASS	AC=1;AF=0.955;AN=2;DP=11302;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:144,121:265:99:4608,0,6195:90,54,78,43
chr1	145501246	.	C	T	1027.28	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.539;QD=12.53;ReadPosRankSum=0.074;SOR=0.666;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,39:82:99:1056,0,1293:13,30,12,27
chr1	145501455	.	A	G	1504.15	PASS	AC=1;AF=0.5;AN=2;DP=273;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,82:157:99:2093,0,1829:40,35,43,39
chr1	145508146	.	C	A	780.02	PASS	AC=1;AF=0.5;AN=2;DP=189;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,65:118:99:1702,0,1195:29,24,36,29
chr1	145509217	.	C	G	566.42	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=4.111;FractionInformativeReads=1;MQ=58.36;MQRankSum=-0.665;QD=19.53;ReadPosRankSum=2.134;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:595,0,306:1,9,5,14
chr1	145510376	.	A	G	546.92	DRAGENHardSNP	AC=1;AF=0.955;AN=2;DP=1132;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:90:90,0,221:6,4,2,2
chr1	145516138	.	T	G	485.34	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.35;QD=14.71;ReadPosRankSum=-0.682;SOR=0.955;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,20:33:99:514,0,358:7,6,12,8
chr1	145517191	.	G	A	999.54	PASS	AC=1;AF=0.5;AN=2;DP=106;FS=1.589;FractionInformativeReads=1;MQ=60;MQRankSum=-1.355;QD=9.43;ReadPosRankSum=-2.365;SOR=0.919;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,45:106:99:1028,0,1581:32,29,26,19
chr1	145517252	.	C	T	1243.2	PASS	AC=1;AF=0.5;AN=2;DP=125;FS=4.425;FractionInformativeReads=1;MQ=60;MQRankSum=2.013;QD=9.95;ReadPosRankSum=1.333;SOR=0.999;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:75,50:125:99:1271,0,1953:36,39,29,21
chr1	145522423	.	T	TTG	228.43	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=0.923;MQ=60;MQRankSum=-1.378;QD=17.57;ReadPosRankSum=0.869;SOR=0.269;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:266,0,235:5,1,4,2
chr1	145527604	.	A	G	2054.31	PASS	AC=1;AF=0.5;AN=2;DP=337;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:92,72:164:99:1738,0,2145:56,36,36,36
chr1	145531980	.	T	C	2251.69	PASS	AC=2;AF=1;AN=2;DP=2850;FS=0;MQ=60;MQRankSum=-0.675;ReadPosRankSum=-0.147;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2515,209,0:0,0,42,28
chr1	145532010	.	CTGTG	CTGTGTG,CTGTGTGTG,CTGTGTGTGTG,C,CTG	227.92	PASS	AC=0,0,0,1,1;AF=0.21,0.194,0.065,0.048,0.065;AN=2;DP=2080;set=variant-filterInvariant3-variant4-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-filterInvariant22-variant24-variant27-variant28-variant29-variant30-variant31-filterInvariant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	4/5:54:99:8,1,24,21
chr1	145532549	.	T	C	6078.82	PASS	AC=2;AF=1;AN=2;DP=7570;FS=0;MQ=60;MQRankSum=1.492;ReadPosRankSum=0.409;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:5946,565,0:0,0,97,92
chr1	145535611	.	T	G	1574.28	PASS	AC=1;AF=0.75;AN=2;DP=1558;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:567,0,413:10,5,14,6
chr1	145535921	.	T	C	6516.04	PASS	AC=1;AF=0.75;AN=2;DP=9532;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,108:221:99:2867,0,2926:59,54,52,56
chr1	145538664	.	A	G	5392.48	PASS	AC=1;AF=0.75;AN=2;DP=6852;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,86:166:99:2166,0,2084:47,33,47,39
chr1	145539046	.	C	T	908.08	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=6.86;FractionInformativeReads=1;MQ=60;MQRankSum=0.886;QD=9.98;ReadPosRankSum=-1.966;SOR=0.29;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,44:91:99:936,0,1327:16,31,21,23
chr1	145555653	.	C	T	3351.89	PASS	AC=1;AF=0.743;AN=2;DP=11105;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:177,177:354:99:3979,0,4336:98,79,93,84
chr1	145556986	.	C	T	223.25	PASS	AC=1;AF=0.615;AN=2;DP=949;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant12-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,14:47:99:310,0,876:21,12,10,4
chr1	145558565	.	C	G	2765.2	PASS	AC=1;AF=0.989;AN=2;DP=3886;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:51,47:98:99:1426,0,1533:14,37,10,37
chr1	145558824	.	A	C	772.91	PASS	AC=1;AF=0.641;AN=2;DP=2426;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,38:87:99:967,0,1483:33,16,22,16
chr1	145562293	.	G	C	969.86	PASS	AC=1;AF=0.763;AN=2;DP=6172;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,80:175:99:1924,0,2430:48,47,36,44
chr1	145562532	.	C	G	1683.61	PASS	AC=1;AF=0.667;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant5-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,66:159:99:1385,0,2432:41,52,32,34
chr1	145567527	.	T	C	323.56	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=4.563;FractionInformativeReads=1;MQ=60;MQRankSum=0.321;QD=11.98;ReadPosRankSum=-1.012;SOR=2.147;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:352,0,563:11,5,10,1
chr1	145578791	.	T	C	1188.46	PASS	AC=1;AF=0.5;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,55:116:99:1585,0,1561:28,33,18,37
chr1	145585005	.	G	A	156.67	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.466;QD=14.24;ReadPosRankSum=1.186;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:185,0,183:0,5,1,5
chr1	145585317	.	A	G	2749.25	PASS	AC=1;AF=0.989;AN=2;DP=5231;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:69,40:109:99:1041,0,1783:37,32,26,14
chr1	145586309	.	C	T	1454.01	PASS	AC=2;AF=1;AN=2;DP=1764;FS=0;MQ=60;MQRankSum=-0.657;ReadPosRankSum=0.179;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1439,138,0:0,0,22,24
chr1	145586403	.	G	T	1535.56	PASS	AC=1;AF=0.977;AN=2;DP=1744;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:571,0,470:11,6,10,14
chr1	145588065	.	T	G	40.7	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.198;QD=5.81;ReadPosRankSum=-0.922;SOR=0.027;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,787:5,0,1,1
chr1	145588066	.	C	T	40.7	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.198;QD=5.81;ReadPosRankSum=0.922;SOR=0.027;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,787:5,0,1,1
chr1	145588184	.	T	C	414.73	PASS	AC=1;AF=0.654;AN=2;DP=764;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant30-variant31-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:307,0,484:11,5,7,5
chr1	145589491	.	A	T	1992.3	PASS	AC=1;AF=0.989;AN=2;DP=4276;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:58,59:117:99:1271,0,1348:26,32,27,32
chr1	145589516	.	G	C	545.13	PASS	AC=1;AF=0.633;AN=2;DP=2711;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,54:112:99:1344,0,1476:25,33,24,30
chr1	145589666	.	C	A	400.31	PASS	AC=1;AF=0.989;AN=2;DP=683;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:429,0,252:2,6,2,11
chr1	145594799	.	C	T	481.36	PASS	AC=1;AF=0.743;AN=2;DP=484;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:65:65,0,166:5,1,2,1
chr1	145597116	.	C	T	2751.98	PASS	AC=1;AF=0.989;AN=2;DP=4498;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:61,47:108:99:1270,0,1570:30,31,22,25
chr1	145598459	.	T	C	2378.69	PASS	AC=1;AF=0.989;AN=2;DP=3720;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,48:95:99:1298,0,1275:19,28,22,26
chr1	145601861	.	G	A	2798	PASS	AC=1;AF=0.989;AN=2;DP=3739;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:49,39:88:99:1118,0,1354:14,35,9,30
chr1	145688667	.	TA	T	3834.15	PASS	AC=1;AF=0.909;AN=2;DP=6814;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:65,33:98:99:551,0,1202:36,29,19,14
chr1	145695923	.	T	G	593.94	PASS	AC=1;AF=0.989;AN=2;DP=871;MQ=60;MQRankSum=-1.169;ReadPosRankSum=0.734;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:373,0,386:10,2,9,4
chr1	145697315	.	ATTT	AT,A,ATT,ATTTT,ATTTTT	1326.8	PASS	AC=1,0,0,0,0;AF=0.211,0.224,0.25,0.039,0.013;AN=2;DP=7034;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:122:99:40,34,21,27
chr1	145697799	.	A	G	7194.57	PASS	AC=1;AF=0.989;AN=2;DP=7829;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:108,92:200:99:2398,0,2820:43,65,34,58
chr1	145697814	.	CT	C	345.97	PASS	AC=1;AF=0.5;AN=2;DP=6040;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,46:113:99:547,0,807:24,43,17,29
chr1	145706564	.	CAA	CA,CAAA,CAAAA,C	168.86	PASS	AC=1,0,0,0;AF=0.227,0.25,0.045,0.023;AN=2;DP=579;set=variant3-filterInvariant4-filterInvariant5-variant6-variant9-variant11-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant26-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41	GT:DP:GQ:SB	0/1:18:34:5,2,9,2
chr1	146013577	.	A	C	352.31	PASS	AC=1;AF=0.534;AN=2;DP=2690;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,39:65:99:1014,0,700:9,17,15,24
chr1	146055321	.	T	C	133.51	DRAGENHardSNP	AC=2;AF=0.848;AN=2;DP=113;FS=0;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:82,9,0:0,0,3,0
chr1	146055329	.	T	C	230.93	DRAGENHardSNP	AC=1;AF=0.542;AN=2;DP=336;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:111,0,240:6,3,5,1
chr1	146057251	.	T	C	298.71	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=45;FS=2.892;FractionInformativeReads=1;MQ=28.25;MQRankSum=-1.292;QD=6.64;ReadPosRankSum=-0.652;SOR=1.307;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:29,16:45:99:327,0,641:18,11,12,4
chr1	146215022	.	T	C	386.62	DRAGENHardSNP	AC=1;AF=0.693;AN=2;DP=1403;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:4,31:35:75:771,0,75:3,1,26,5
chr1	146215111	.	G	A	5334.07	DRAGENHardSNP	AC=2;AF=0.761;AN=2;DP=8761;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:8,149:157:99:6390,119,0:4,4,100,49
chr1	146215113	.	G	A	5334.07	DRAGENHardSNP	AC=2;AF=0.761;AN=2;DP=8939;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:8,151:159:99:6390,119,0:4,4,101,50
chr1	146215138	.	A	G	3652.35	PASS	AC=2;AF=0.795;AN=2;DP=10834;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:8,187:195:99:4772,225,0:4,4,120,67
chr1	146215223	.	G	C	5189.29	PASS	AC=2;AF=0.727;AN=2;DP=10113;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:7181,497,0:0,0,68,97
chr1	146215232	.	A	C	4924.69	PASS	AC=2;AF=0.727;AN=2;DP=9730;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:7015,479,0:0,0,66,92
chr1	146215276	.	C	T	1759.76	PASS	AC=2;AF=0.75;AN=2;DP=6557;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:2,99:101:99:2816,254,0:1,1,33,66
chr1	146215376	.	T	C	359.41	PASS	AC=2;AF=0.727;AN=2;DP=1993;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:2,41:43:80:1101,80,0:1,1,10,31
chr1	146246117	.	C	T	167.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=134;FS=0;FractionInformativeReads=0.993;MQ=24.97;MQRankSum=-5;QD=1.25;ReadPosRankSum=0.711;SOR=0.675;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:109,24:133:99:196,0,2267:55,54,12,12
chr1	146250855	.	C	T	213.34	DRAGENHardSNP	AC=2;AF=0.641;AN=2;DP=1946;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:89:727,89,0:0,0,15,15
chr1	146250905	.	G	C	248.36	DRAGENHardSNP	AC=2;AF=0.621;AN=2;DP=2024;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:776,95,0:0,0,16,16
chr1	146316483	.	C	G	86.75	PASS	AC=1;AF=0.75;AN=2;DP=914;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant6-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant13-filterInvariant14-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant34-variant36-variant41-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:404,0,381:12,4,11,7
chr1	146320949	.	C	T	286.36	PASS	AC=1;AF=0.5;AN=2;DP=78;FractionInformativeReads=1;set=variant5-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:273,0,132:3,3,5,4
chr1	146395447	.	A	G	395.24	PASS	AC=1;AF=0.5;AN=2;DP=3865;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,21:89:99:284,0,1884:48,20,13,8
chr1	146395537	.	A	G	299.67	PASS	AC=1;AF=0.5;AN=2;DP=3964;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,16:101:99:185,0,2362:34,51,4,12
chr1	146398203	.	A	G,T	1041.54	DRAGENHardSNP	AC=0,1;AF=0.489,0.011;AN=2;DP=3558;FractionInformativeReads=1;set=FilteredInAll	GT:DP:GQ:SB	0/2:78:99:27,13,26,12
chr1	146398208	.	A	G	1155.19	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3921;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:42,50:92:99:1724,0,1806:27,15,32,18
chr1	146399411	.	G	A	510.32	PASS	AC=1;AF=0.927;AN=2;DP=1080;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,10:46:99:154,0,944:22,14,8,2
chr1	146399499	.	CTG	C	1627.02	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=9.106;FractionInformativeReads=0.972;MQ=33.79;MQRankSum=2.44;QD=22.6;ReadPosRankSum=2.224;SOR=0.177;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,42:70:99:1664,0,1001:22,6,25,17
chr1	146399535	.	T	C	1200.82	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=1.588;FractionInformativeReads=1;MQ=35.75;MQRankSum=-2.108;QD=10.72;ReadPosRankSum=0.456;SOR=0.876;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,48:112:99:1229,0,1923:40,24,32,16
chr1	146491095	.	A	G	172.01	PASS	AC=2;AF=0.941;AN=2;DP=419;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-filterInvariant20-variant21-filterInvariant23-variant24-variant25-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant31-variant33-variant34-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:305,27,0:0,0,6,3
chr1	146493279	.	C	T	691.77	PASS	AC=2;AF=0.947;AN=2;DP=517;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:315,21,0:0,0,7,0
chr1	146493280	.	A	G	691.77	PASS	AC=2;AF=0.947;AN=2;DP=522;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:315,21,0:0,0,7,0
chr1	146495506	.	T	G	360.3	PASS	AC=2;AF=1;AN=2;DP=334;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:136,12,0:0,0,3,1
chr1	146496661	.	G	A	212.57	PASS	AC=1;AF=0.563;AN=2;DP=199;MQ=60;set=variant-variant2-variant6-variant17-variant20-variant25-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:249,0,508:2,13,2,7
chr1	146514576	.	T	C	1536.43	PASS	AC=1;AF=0.543;AN=2;DP=3812;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant18-variant19-variant23-variant24-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:78,74:152:99:1889,0,1923:45,33,50,24
chr1	146584316	.	T	A	289.04	PASS	AC=1;AF=0.525;AN=2;DP=1673;set=variant-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant25-variant27-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,42:94:99:944,0,1243:23,29,17,25
chr1	146584337	.	G	A	200.93	PASS	AC=1;AF=0.524;AN=2;DP=1481;set=variant-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,37:84:99:891,0,1158:21,26,14,23
chr1	146586670	.	T	G	151.77	PASS	AC=2;AF=0.682;AN=2;DP=136;FractionInformativeReads=1;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant14-variant16-variant17-variant18-variant21-variant25-variant29-variant31-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,3,0
chr1	146586676	.	T	C	196.77	PASS	AC=2;AF=0.696;AN=2;DP=150;FractionInformativeReads=1;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant17-variant18-variant21-variant25-variant26-variant29-variant31-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:15:217,15,0:0,0,4,0
chr1	146586677	.	G	A	196.77	PASS	AC=2;AF=0.696;AN=2;DP=155;FractionInformativeReads=1;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant17-variant18-variant21-variant25-variant26-variant29-variant31-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:217,15,0:0,0,5,0
chr1	146586688	.	G	A	222.3	PASS	AC=2;AF=0.673;AN=2;DP=220;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant21-variant25-variant26-variant29-variant31-variant33-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:214,15,0:0,0,5,0
chr1	146586703	.	G	T	286.77	PASS	AC=2;AF=0.679;AN=2;DP=300;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant21-variant25-variant26-variant27-variant29-variant31-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:24:350,24,0:0,0,6,1
chr1	146586705	.	A	C	286.77	PASS	AC=2;AF=0.679;AN=2;DP=315;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant21-variant25-variant26-variant27-variant29-variant31-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:350,24,0:0,0,6,2
chr1	146586727	.	G	A	236.46	PASS	AC=1;AF=0.5;AN=2;DP=82;FractionInformativeReads=1;set=variant-variant9-variant12-variant25-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:148,0,238:5,2,4,1
chr1	146627405	.	C	G	7227.02	PASS	AC=2;AF=0.632;AN=2;DP=7848;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,168:170:99:5105,458,0:1,1,76,92
chr1	146627693	.	G	GT	1286.44	PASS	AC=1;AF=0.5;AN=2;DP=584;MQ=60;set=variant-variant9-variant12-variant25-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,41:98:99:1337,0,1918:32,25,21,20
chr1	146627805	.	C	CACAA	3990.32	PASS	AC=1;AF=0.5;AN=2;DP=1673;MQ=60;set=variant-variant9-variant12-variant25-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:139,100:239:99:3858,0,8002:76,63,59,41
chr1	146628374	.	A	C	1868.73	PASS	AC=1;AF=0.5;AN=2;DP=1119;MQ=60;set=variant-variant9-variant12-variant25-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:84,69:153:99:1906,0,2297:47,37,43,26
chr1	146628407	.	T	C	7439.25	PASS	AC=2;AF=0.632;AN=2;DP=7286;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:6730,612,0:0,0,120,84
chr1	146628635	.	A	G	3813.21	PASS	AC=2;AF=0.632;AN=2;DP=3440;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:4166,360,0:0,0,38,82
chr1	146628742	.	T	G	959.91	PASS	AC=2;AF=0.636;AN=2;DP=885;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1519,138,0:0,0,14,32
chr1	146629400	.	GC	G	1043.07	PASS	AC=1;AF=0.563;AN=2;DP=2661;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,33:91:99:945,0,1845:21,37,8,25
chr1	146629916	.	C	T	6294.69	PASS	AC=1;AF=0.563;AN=2;DP=14251;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:212,161:373:99:4070,0,5544:100,112,89,72
chr1	146630941	.	T	C	759.46	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.54;QD=14.06;ReadPosRankSum=1.822;SOR=0.598;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,32:54:99:788,0,532:13,9,18,14
chr1	146633933	.	G	A	799.8	PASS	AC=2;AF=0.632;AN=2;DP=1856;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1753,168,0:0,0,35,21
chr1	146639588	.	A	G	372.2	PASS	AC=1;AF=0.5;AN=2;DP=360;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant12-variant25-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,35:57:99:993,0,566:7,15,11,24
chr1	146643555	.	A	G	1597.83	PASS	AC=2;AF=0.632;AN=2;DP=2819;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2713,279,0:0,0,50,43
chr1	146644199	.	C	A	224.34	PASS	AC=2;AF=0.553;AN=2;DP=480;MQ=60;set=variant-variant7-variant8-variant14-variant17-variant19-variant21-variant22-variant25-variant27-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:558,51,0:0,0,9,8
chr1	146651140	.	A	C	622.54	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.724;QD=20.75;ReadPosRankSum=0.86;SOR=0.756;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,21:30:99:651,0,292:2,7,5,16
chr1	146656292	.	A	G	775.48	PASS	AC=2;AF=0.898;AN=2;DP=2864;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1957,180,0:0,0,22,38
chr1	146658041	.	G	GA	2317.99	PASS	AC=1;AF=0.528;AN=2;DP=4691;MQ=60;set=variant-variant7-variant8-variant14-variant17-variant19-variant21-variant22-variant25-variant27-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:97,116:213:99:2727,0,2274:44,53,61,55
chr1	146672906	.	C	T	1368.77	PASS	AC=2;AF=0.898;AN=2;DP=5087;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3573,312,0:0,0,50,54
chr1	146673178	.	A	G	1137.52	PASS	AC=2;AF=0.966;AN=2;DP=1259;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1040,84,0:0,0,5,23
chr1	146680262	.	A	G	713.25	PASS	AC=2;AF=0.898;AN=2;DP=1798;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1158,105,0:0,0,23,12
chr1	146685121	.	G	A	670.24	PASS	AC=2;AF=0.898;AN=2;DP=2058;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1356,122,0:0,0,16,25
chr1	146687250	.	A	T	510.49	PASS	AC=2;AF=0.966;AN=2;DP=523;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:703,51,0:0,0,16,1
chr1	146696955	.	G	C	629.27	PASS	AC=1;AF=0.643;AN=2;DP=2034;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:791,0,710:18,9,16,15
chr1	146714392	.	G	T,C	2135.73	PASS	AC=1,0;AF=0.233,0.628;AN=2;DP=7339;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:154:99:45,26,49,34
chr1	146724093	.	A	G	2340.16	PASS	AC=2;AF=0.966;AN=2;DP=2990;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,80:81:99:2989,202,0:1,0,35,45
chr1	146727388	.	G	T	330.39	PASS	AC=1;AF=0.556;AN=2;DP=268;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant8-variant14-variant17-variant19-variant21-variant22-variant27-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:268,0,264:6,3,7,1
chr1	146728162	.	T	TA	3319.4	PASS	AC=2;AF=0.966;AN=2;DP=3714;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:3129,253,0:0,0,50,33
chr1	146736092	.	C	T	554.15	PASS	AC=1;AF=0.556;AN=2;DP=987;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant8-variant14-variant17-variant19-variant21-variant22-variant27-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,30:50:99:942,0,467:12,8,20,10
chr1	146740502	.	C	G	2462.65	PASS	AC=1;AF=0.556;AN=2;DP=3746;MQ=60;set=variant-variant3-variant7-variant8-variant14-variant17-variant19-variant21-variant22-variant27-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:99,101:200:99:2393,0,2495:53,46,49,52
chr1	146740576	.	G	A	2579.68	PASS	AC=1;AF=0.872;AN=2;DP=9138;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,93:211:99:2119,0,2866:58,60,44,49
chr1	146746871	.	G	A	617.21	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=1.169;FractionInformativeReads=1;MQ=60;MQRankSum=-2.002;QD=12.86;ReadPosRankSum=-1.527;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:645,0,614:17,8,14,9
chr1	146747153	.	T	C	1546.45	PASS	AC=1;AF=0.86;AN=2;DP=4300;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,44:88:99:1077,0,1166:14,30,15,29
chr1	146747194	.	G	A	614.69	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=1.559;FractionInformativeReads=1;MQ=60;MQRankSum=-0.406;QD=15.37;ReadPosRankSum=0.867;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:643,0,588:3,16,5,16
chr1	146748072	.	A	G	238.54	PASS	AC=2;AF=0.989;AN=2;DP=353;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:333,27,0:0,0,1,8
chr1	146751782	.	A	C	3652.31	PASS	AC=2;AF=0.966;AN=2;DP=5896;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4367,421,0:0,0,80,61
chr1	146759306	.	T	C	330.04	PASS	AC=1;AF=0.556;AN=2;DP=670;MQ=60;set=variant-variant3-variant7-variant8-variant14-variant17-variant19-variant21-variant22-variant27-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,24:57:99:568,0,918:23,10,16,8
chr1	146762865	.	A	G	103.54	PASS	AC=1;AF=0.864;AN=2;DP=154;FS=0;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:104,0,163:4,1,3,0
chr1	146763089	.	G	A	1432.49	PASS	AC=1;AF=0.793;AN=2;DP=4346;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,46:125:99:1194,0,2005:38,41,29,17
chr1	146763415	.	T	C	399.59	PASS	AC=1;AF=0.793;AN=2;DP=926;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:371,0,338:1,8,1,10
chr1	146763438	.	A	G	393.12	PASS	AC=1;AF=0.955;AN=2;DP=634;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:188,0,236:1,7,1,5
chr1	146765454	.	C	G	591.24	PASS	AC=1;AF=0.5;AN=2;DP=422;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant9-variant12-variant29-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,29:54:99:806,0,696:10,15,8,21
chr1	146766069	.	C	CAT	5400.27	PASS	AC=2;AF=0.966;AN=2;DP=5892;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:5693,388,0:0,0,84,44
chr1	146767062	.	A	G	221.4	PASS	AC=1;AF=0.5;AN=2;DP=248;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant9-variant12-variant29-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:300,0,291:8,1,8,2
chr1	146767149	.	G	T	2481.48	PASS	AC=2;AF=0.966;AN=2;DP=3446;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1857,186,0:0,0,39,23
chr1	146767320	.	A	G	4136.4	PASS	AC=1;AF=0.793;AN=2;DP=11073;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:133,98:231:99:2252,0,3556:78,55,56,42
chr1	146767486	.	T	C	2745.48	PASS	AC=1;AF=0.793;AN=2;DP=5067;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,54:130:99:1879,0,2881:22,54,18,36
chr1	146767490	.	G	A	5694.46	PASS	AC=2;AF=0.966;AN=2;DP=5072;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:4594,376,0:0,0,36,88
chr1	146767494	.	C	G	2562.17	PASS	AC=1;AF=0.793;AN=2;DP=4399;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,45:114:99:1724,0,2765:17,52,12,33
chr1	147076702	.	A	G	139.14	PASS	AC=1;AF=0.5;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant9-variant13-variant14-variant16-variant19-variant30-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:171,0,322:2,8,2,5
chr1	147083744	.	C	T	2602.9	PASS	AC=1;AF=0.611;AN=2;DP=1196;MQ=60;set=variant3-variant6-variant7-variant9-variant12-variant13-variant18-variant19-variant20-variant21-variant24-variant26-variant30-variant31-variant32-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,36:67:99:938,0,826:13,18,13,23
chr1	147086504	.	A	C	455.69	PASS	AC=1;AF=0.568;AN=2;DP=744;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant20-variant22-variant24-variant25-variant27-variant29-variant31-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,23:35:99:677,0,373:2,10,7,16
chr1	147092112	.	G	A	1288.23	PASS	AC=1;AF=0.5;AN=2;DP=225;FractionInformativeReads=1;MQ=60;set=variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,48:94:99:1148,0,1213:26,20,24,24
chr1	147096794	.	A	G	1474.61	PASS	AC=2;AF=0.932;AN=2;DP=2618;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1520,147,0:0,0,20,29
chr1	147096828	.	C	G	1375.41	PASS	AC=2;AF=0.989;AN=2;DP=2021;MQ=60;MQRankSum=0.796;ReadPosRankSum=-0.726;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1404,123,0:0,0,15,26
chr1	147097266	.	T	C	1737.21	PASS	AC=1;AF=0.571;AN=2;DP=2782;set=variant-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant17-variant20-variant22-variant24-variant25-variant27-variant29-variant31-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,64:120:99:1627,0,1583:23,33,27,37
chr1	147097635	.	C	T	639.04	PASS	AC=2;AF=0.92;AN=2;DP=2920;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2198,201,0:0,0,31,36
chr1	147119273	.	G	A	2984.52	PASS	AC=1;AF=0.811;AN=2;DP=3533;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,52:103:99:1144,0,1155:26,25,27,25
chr1	147121977	.	C	T	2546.5	PASS	AC=2;AF=1;AN=2;DP=4059;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2793,286,0:0,0,57,39
chr1	147124310	.	T	G	1895.41	PASS	AC=1;AF=0.817;AN=2;DP=2912;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,26:52:99:602,0,726:12,14,15,11
chr1	147127602	.	G	A	245.36	PASS	AC=1;AF=0.55;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant12-variant16-variant17-variant20-variant22-variant24-variant25-variant29-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:130,0,229:3,6,1,4
chr1	147131465	.	T	C	2437.89	PASS	AC=1;AF=0.805;AN=2;DP=3084;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,45:75:99:1261,0,667:19,11,29,16
chr1	147131945	.	T	C	337.42	PASS	AC=1;AF=0.808;AN=2;DP=522;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:172,0,473:4,11,0,6
chr1	147142296	.	T	C	926.64	PASS	AC=1;AF=0.563;AN=2;DP=1899;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant17-variant18-variant20-variant22-variant24-variant25-variant29-variant31-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,36:73:99:902,0,881:22,15,18,18
chr1	147228874	.	C	T	407.26	PASS	AC=1;AF=0.63;AN=2;DP=1309;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant11-variant13-variant16-variant18-variant19-variant25-variant26-variant27-variant30-variant31-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,24:57:99:579,0,938:16,17,12,12
chr1	147229299	.	G	A	925.32	PASS	AC=2;AF=0.866;AN=2;DP=1658;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:911,93,0:0,0,17,14
chr1	147229382	.	G	A	1202.9	PASS	AC=2;AF=1;AN=2;DP=2286;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:987,110,0:0,0,21,16
chr1	147229628	.	G	GGGGCATTTGCCAGAGGTACATACCA	587.95	PASS	AC=1;AF=0.683;AN=2;DP=1545;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,15:39:99:611,0,4081:11,13,6,9
chr1	147230217	.	T	C	1930.55	PASS	AC=2;AF=0.866;AN=2;DP=3869;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2921,297,0:0,0,58,41
chr1	147231531	.	T	C	458.04	PASS	AC=2;AF=1;AN=2;DP=592;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:657,57,0:0,0,6,13
chr1	147232555	.	T	C	719.01	PASS	AC=2;AF=1;AN=2;DP=1129;FS=0;MQ=60;MQRankSum=1.083;ReadPosRankSum=-0.758;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:948,84,0:0,0,18,10
chr1	147232740	.	C	T	226.59	PASS	AC=2;AF=0.65;AN=2;DP=994;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:809,75,0:0,0,9,16
chr1	147245324	.	T	C	980.89	PASS	AC=2;AF=1;AN=2;DP=1492;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1215,108,0:0,0,24,12
chr1	147245474	.	G	C	2084.55	PASS	AC=2;AF=1;AN=2;DP=2769;FS=0;MQ=60;MQRankSum=1.354;ReadPosRankSum=0.409;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1874,174,0:0,0,25,33
chr1	147381397	.	GA	G,GAA	126.29	PASS	AC=1,1;AF=0.17,0.477;AN=2;DP=1927;MQ=60;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:32:99:1,1,10,20
chr1	147381444	.	A	C	116.07	PASS	AC=1;AF=0.756;AN=2;DP=930;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:267,0,234:4,6,3,7
chr1	147400734	.	C	T	355.77	PASS	AC=1;AF=0.5;AN=2;DP=358;FractionInformativeReads=1;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:149,37:186:99:662,0,4063:63,86,3,34
chr1	147400824	.	A	C	251.59	PASS	AC=1;AF=0.5;AN=2;DP=259;FractionInformativeReads=1;set=variant14-variant29-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:84,16:100:99:143,0,2605:32,52,9,7
chr1	147581616	.	C	T	134.44	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=48;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:179,0,255:3,9,2,7
chr1	147595168	.	T	C	132.18	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=9.248;FractionInformativeReads=1;MQ=42.9;MQRankSum=-2.817;QD=3.39;ReadPosRankSum=0.883;SOR=2.584;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,9:39:99:160,0,751:13,17,1,8
chr1	147806559	.	C	T	1131.66	PASS	AC=1;AF=0.872;AN=2;DP=3970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:778,0,605:18,6,19,10
chr1	147806574	.	T	C	1293.62	PASS	AC=1;AF=0.5;AN=2;DP=174;FractionInformativeReads=1;MQ=60;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,27:71:99:695,0,1125:27,17,19,8
chr1	147806652	.	A	G	2305.92	PASS	AC=1;AF=0.5;AN=2;DP=390;MQ=60;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,86:174:99:2040,0,2205:53,35,48,38
chr1	147806677	.	C	T	2403.92	PASS	AC=1;AF=0.5;AN=2;DP=431;MQ=60;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:96,93:189:99:2145,0,2553:55,41,51,42
chr1	147806874	.	G	C	593.73	PASS	AC=2;AF=0.895;AN=2;DP=1423;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1524,108,0:0,0,3,33
chr1	147806880	.	T	C	1170.3	PASS	AC=2;AF=1;AN=2;DP=1241;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:93:1389,93,0:0,0,2,27
chr1	148004472	.	G	A	52.13	PASS	AC=1;AF=0.532;AN=2;DP=1511;set=filterInvariant-variant3-filterInvariant5-variant7-variant9-filterInvariant10-variant11-variant12-variant14-filterInvariant16-variant17-variant18-variant19-variant21-filterInvariant22-variant23-filterInvariant26-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:223,0,392:9,1,5,0
chr1	148004475	.	C	G	40.13	PASS	AC=1;AF=0.548;AN=2;DP=1618;set=filterInvariant-variant3-variant5-variant7-variant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-variant14-variant17-variant18-variant19-filterInvariant21-filterInvariant22-variant23-filterInvariant26-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:223,0,392:9,1,6,1
chr1	148004525	.	C	T	150.29	PASS	AC=1;AF=0.5;AN=2;DP=90;FractionInformativeReads=1;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,8:36:99:118,0,597:13,15,6,2
chr1	148004567	.	C	A	331.31	PASS	AC=1;AF=0.5;AN=2;DP=469;FractionInformativeReads=1;set=variant3-variant12-variant17-filterInvariant31-variant38-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:52,7:59:99:137,0,2126:29,23,4,3
chr1	148004568	.	C	A	331.31	PASS	AC=1;AF=0.5;AN=2;DP=472;FractionInformativeReads=1;set=variant3-variant12-variant17-filterInvariant31-variant38-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:52,7:59:99:137,0,2126:29,23,4,3
chr1	148004758	.	A	C	1214.36	PASS	AC=2;AF=1;AN=2;DP=90;FS=0;FractionInformativeReads=1;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1519,156,0:0,0,21,31
chr1	148004781	.	T	C	750.33	PASS	AC=2;AF=1;AN=2;DP=45;FS=0;FractionInformativeReads=1;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1136,81,0:0,0,7,20
chr1	148004784	.	T	C	683.31	PASS	AC=2;AF=1;AN=2;DP=37;FS=0;FractionInformativeReads=1;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:75:1096,75,0:0,0,4,18
chr1	148004785	.	G	A	1006.77	PASS	AC=2;AF=1;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=42.26;QD=29.16;SOR=2.737;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:69:1035,69,0:0,0,4,18
chr1	148004795	.	C	G	310.36	PASS	AC=2;AF=1;AN=2;DP=20;FS=0;FractionInformativeReads=1;SOR=4.804;set=filterInvariant10-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:432,30,0:0,0,0,10
chr1	148004834	.	G	A	135.52	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=26.74;QD=33.88;SOR=3.258;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:164,12,0:0,0,0,4
chr1	148004840	.	C	G	135.52	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=3;FS=0;FractionInformativeReads=1;MQ=27.6;QD=28.11;SOR=2.833;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:12:164,12,0:0,0,0,3
chr1	148010726	.	T	G	72.41	DRAGENHardSNP	AC=2;AF=0.561;AN=2;DP=375;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:103,12,0:0,0,4,0
chr1	148010911	.	G	A	3363.42	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=20112;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:79,245:324:99:4927,0,983:41,38,121,124
chr1	148010972	.	A	G	71.54	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2939;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:305,49:354:99:191,0,6355:141,164,22,27
chr1	148011027	.	C	T	264.97	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=783;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:100,17:117:65:65,0,2162:32,68,6,11
chr1	148012775	.	C	G	34.07	PASS	AC=1;AF=0.5;AN=2;DP=3;FS=0;FractionInformativeReads=1;MQ=44.51;MQRankSum=0.736;QD=11.36;ReadPosRankSum=0.736;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:28:62,0,28:1,0,2,0
chr1	148017191	.	A	T	37.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=21.89;MQRankSum=0.572;QD=4.71;ReadPosRankSum=1.589;SOR=0.105;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:66:66,0,246:5,1,1,1
chr1	148017197	.	C	T	37.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=21.89;MQRankSum=-0.572;QD=4.71;ReadPosRankSum=0.572;SOR=0.105;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:66:66,0,246:5,1,1,1
chr1	148017292	.	C	G	69.39	DRAGENHardSNP	AC=1;AF=0.55;AN=2;DP=64;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:77:77,0,138:2,2,3,1
chr1	148017605	.	C	T	232.23	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=234;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:100,26:126:99:264,0,2084:46,54,11,15
chr1	148017629	.	C	T	141.1	PASS	AC=1;AF=0.5;AN=2;DP=5895;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:54,40:94:99:686,0,1069:20,34,18,22
chr1	148021700	.	G	A	346.74	PASS	AC=2;AF=0.557;AN=2;DP=2295;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:319,36,0:0,0,8,4
chr1	148021837	.	T	C	64.64	PASS	AC=2;AF=0.56;AN=2;DP=359;FractionInformativeReads=1;set=variant2-filterInvariant3-variant4-variant5-variant7-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant34-variant35-filterInvariant38-variant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	148021838	.	G	A	64.64	PASS	AC=2;AF=0.56;AN=2;DP=348;FractionInformativeReads=1;set=variant2-filterInvariant3-variant4-variant5-variant7-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant34-variant35-filterInvariant38-variant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	148022889	.	A	T	350.91	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=25;FS=0;MQRankSum=-1.735;ReadPosRankSum=1.156;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:148,18,0:0,0,5,1
chr1	148023129	.	C	G	36.14	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1843;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:39,12:51:99:145,0,855:14,25,5,7
chr1	148023403	.	G	A	297.95	PASS	AC=1;AF=0.547;AN=2;DP=1302;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-variant6-variant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:330,0,371:12,5,14,0
chr1	148023489	.	C	T	187.46	PASS	AC=1;AF=0.543;AN=2;DP=1859;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,16:47:99:536,0,1382:20,11,11,5
chr1	148023494	.	G	A	190.47	PASS	AC=1;AF=0.545;AN=2;DP=1019;FractionInformativeReads=1;set=filterInvariant-filterInvariant3-variant4-filterInvariant10-filterInvariant12-filterInvariant14-filterInvariant17-variant18-filterInvariant19-filterInvariant21-filterInvariant25-filterInvariant29-filterInvariant30-filterInvariant31-variant33-variant34-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,14:43:99:487,0,1363:19,10,9,5
chr1	148023502	.	GT	G	1669.79	PASS	AC=1;AF=0.583;AN=2;DP=481;set=variant3-variant10-variant12-variant17-variant29-variant30-variant31-variant34-variant38-filterInvariant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,15:42:99:515,0,1291:17,10,8,7
chr1	148023509	.	G	A	457.93	PASS	AC=1;AF=0.534;AN=2;DP=2323;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-variant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,28:41:99:873,0,224:7,6,15,13
chr1	148024964	.	A	G	222.99	PASS	AC=2;AF=0.688;AN=2;DP=1548;set=variant-filterInvariant4-variant8-variant9-filterInvariant10-filterInvariant13-filterInvariant14-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-filterInvariant30-filterInvariant31-variant33-variant36-filterInvariant37-filterInvariant39-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:627,63,0:0,0,9,12
chr1	148025606	.	C	T	225.19	PASS	AC=2;AF=0.643;AN=2;DP=902;set=variant-filterInvariant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-filterInvariant13-filterInvariant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant36-filterInvariant37-filterInvariant39-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:431,48,0:0,0,10,6
chr1	148025663	.	C	T	196.61	PASS	AC=1;AF=0.5;AN=2;DP=395;FractionInformativeReads=1;set=filterInvariant3-filterInvariant14-filterInvariant18-filterInvariant22-variant24-variant26-variant35-variant36-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:25,5:30:99:178,0,991:17,8,4,1
chr1	148025668	.	G	A	200.58	PASS	AC=1;AF=0.5;AN=2;DP=435;FractionInformativeReads=1;set=filterInvariant3-filterInvariant14-filterInvariant18-filterInvariant22-variant24-variant26-variant35-variant36-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:25,8:33:99:202,0,988:17,8,6,2
chr1	148025702	.	G	A	258.74	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=632;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:44,10:54:86:86,0,1089:28,16,5,5
chr1	148252111	.	C	T	276.17	PASS	AC=1;AF=0.5;AN=2;DP=10470;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant9-variant10-variant11-variant12-variant13-filterInvariant14-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:185,43:228:99:392,0,5009:67,118,23,20
chr1	148252164	.	A	C	294.59	PASS	AC=1;AF=0.5;AN=2;DP=4092;set=variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant9-filterInvariant10-variant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-variant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant24-filterInvariant25-variant26-filterInvariant27-variant28-variant29-filterInvariant31-variant32-filterInvariant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:93,14:107:59:59,0,2910:19,74,4,10
chr1	148342488	.	T	C	1064.88	PASS	AC=1;AF=0.5;AN=2;DP=10305;set=variant-variant2-variant5-variant6-filterInvariant8-variant9-variant11-variant12-filterInvariant15-variant16-filterInvariant19-variant20-filterInvariant21-filterInvariant22-variant24-filterInvariant25-variant27-variant28-filterInvariant29-filterInvariant31-variant32-variant33-variant34-variant35-filterInvariant36-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:243,39:282:99:126,0,8153:116,127,22,17
chr1	148342500	.	GCCT	G	3966.59	PASS	AC=1;AF=0.5;AN=2;DP=305;FS=0;FractionInformativeReads=0.974;MQ=55.7;MQRankSum=5.505;QD=13.01;ReadPosRankSum=0.101;SOR=0.669;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:186,111:297:99:4004,0,7397:91,95,55,56
chr1	148344491	.	T	A	38.95	PASS	AC=1;AF=0.5;AN=2;DP=2375;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,11:57:99:217,0,1541:41,5,9,2
chr1	148344521	.	C	T	364.79	PASS	AC=1;AF=0.5;AN=2;DP=3512;set=variant2-filterInvariant3-variant4-variant5-variant7-variant9-variant10-filterInvariant11-variant12-variant13-variant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant21-variant22-filterInvariant23-variant24-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-filterInvariant33-variant35-filterInvariant36-variant37-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,26:102:99:394,0,2353:65,11,19,7
chr1	148344564	.	T	C	323.21	PASS	AC=1;AF=0.5;AN=2;DP=7849;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,51:195:99:925,0,3851:94,50,39,12
chr1	148344615	.	G	GC	409.77	PASS	AC=1;AF=0.5;AN=2;DP=7286;set=filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant31-filterInvariant32-filterInvariant35-filterInvariant36-filterInvariant37-variant40-filterInvariant41-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:329,37:366:99:154,0,12829:174,155,17,20
chr1	148344624	.	T	C,A	1879.8	PASS	AC=1,0;AF=0.386,0.114;AN=2;DP=13312;set=Intersection	GT:DP:GQ:SB	0/1:291:99:90,55,62,84
chr1	148344660	.	G	C	153.13	PASS	AC=1;AF=0.5;AN=2;DP=10939;set=filterInvariant-filterInvariant2-variant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-variant13-filterInvariant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:336,40:376:99:135,0,8970:167,169,7,33
chr1	148344741	.	G	C	389.8	PASS	AC=1;AF=0.5;AN=2;DP=4428;set=variant-filterInvariant3-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-variant30-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant38-variant39-filterInvariant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:148,23:171:99:319,0,4158:61,87,2,21
chr1	148756363	.	A	G	376.77	DRAGENHardSNP	AC=2;AF=0.932;AN=2;DP=569;FS=0;FractionInformativeReads=1;MQRankSum=-3.418;ReadPosRankSum=-1.275;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:39:585,39,0:0,0,10,2
chr1	148756384	.	G	A	401.49	PASS	AC=2;AF=0.682;AN=2;DP=931;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:810,54,0:0,0,14,4
chr1	148756397	.	C	T	475.68	PASS	AC=2;AF=0.693;AN=2;DP=1080;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:835,57,0:0,0,14,5
chr1	148756432	.	C	A	628.5	PASS	AC=2;AF=0.705;AN=2;DP=1484;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:1,29:30:79:662,79,0:1,0,14,15
chr1	148756515	.	A	C	446.32	DRAGENHardSNP	AC=2;AF=0.92;AN=2;DP=862;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:659,48,0:0,0,3,13
chr1	148756518	.	C	T	421.77	DRAGENHardSNP	AC=2;AF=0.738;AN=2;DP=678;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:634,45,0:0,0,2,13
chr1	148873574	.	G	T	818.7	PASS	AC=1;AF=0.5;AN=2;DP=4281;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:50,38:88:99:833,0,1190:19,31,12,26
chr1	148882326	.	C	A	257.24	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2097;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:29,10:39:99:147,0,640:11,18,5,5
chr1	148889543	.	AT	A	692.74	PASS	AC=1;AF=0.5;AN=2;DP=3240;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-filterInvariant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,24:73:99:508,0,1890:32,17,16,8
chr1	148889551	.	TAA	T,AAA	1553.41	PASS	AC=1,0;AF=0.5,0.05;AN=2;DP=3572;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant2-variant22-variant24-variant25-variant26-variant27-variant28-variant-variant29-variant30-variant31-variant32-variant33-variant34-variant4-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:77:99:26,12,23,16
chr1	148889699	.	A	G	703.23	PASS	AC=1;AF=0.5;AN=2;DP=3655;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:49,39:88:99:943,0,1225:20,29,13,26
chr1	148889778	.	T	C	209.12	PASS	AC=1;AF=0.5;AN=2;DP=837;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:223,0,383:0,12,0,7
chr1	148903047	.	G	A	391.27	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=18554;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:248,119:367:99:1839,0,5596:142,106,55,64
chr1	148903089	.	G	A	253.14	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=10999;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:247,39:286:99:188,0,6204:125,122,18,21
chr1	148903118	.	C	T	289.77	PASS	AC=1;AF=0.5;AN=2;DP=12082;set=filterInvariant2-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-variant12-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:230,41:271:99:409,0,6208:135,95,10,31
chr1	148903133	.	C	T	179.5	PASS	AC=1;AF=0.5;AN=2;DP=6737;set=filterInvariant6-filterInvariant7-filterInvariant10-filterInvariant12-filterInvariant14-filterInvariant16-filterInvariant17-variant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant26-variant30-variant33-filterInvariant35-filterInvariant37-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:232,30:262:99:100,0,6523:141,91,7,23
chr1	148903154	.	G	C	479.46	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=273;FS=1.303;FractionInformativeReads=1;MQ=31.59;MQRankSum=-0.976;QD=1.76;ReadPosRankSum=-3.871;SOR=0.549;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:228,45:273:99:508,0,6703:135,93,25,20
chr1	149279525	.	C	T	391.61	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=0;FractionInformativeReads=1;MQ=54;MQRankSum=-0.005;QD=4.3;ReadPosRankSum=-0.246;SOR=0.656;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:69,22:91:99:420,0,1809:44,25,14,8
chr1	149279739	.	C	T	2695.91	PASS	AC=2;AF=0.784;AN=2;DP=4104;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1724,132,0:0,0,3,41
chr1	149279743	.	T	A	347.72	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=2.645;FractionInformativeReads=1;MQ=42.15;MQRankSum=1.505;QD=8.92;ReadPosRankSum=-0.641;SOR=1.341;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,13:39:99:376,0,833:2,24,0,13
chr1	149290370	.	G	A	175.91	PASS	AC=1;AF=0.5;AN=2;DP=1409;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,15:22:99:373,0,136:5,2,8,7
chr1	149290383	.	G	T	140.38	PASS	AC=1;AF=0.5;AN=2;DP=1422;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:335,0,157:6,3,6,9
chr1	149290738	.	C	A	1232.77	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=9.716;FractionInformativeReads=1;MQ=43.21;MQRankSum=3.945;QD=20.89;ReadPosRankSum=-1.346;SOR=1.03;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,47:59:99:1261,0,145:4,8,29,18
chr1	149290779	.	T	A	1276.48	PASS	AC=2;AF=1;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=49.3;QD=31.13;SOR=0.954;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1305,123,0:0,0,23,18
chr1	149370885	.	G	A	178.2	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=27.92;QD=25.46;SOR=1.609;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:206,21,0:0,0,2,5
chr1	149375372	.	G	A	449.84	PASS	AC=2;AF=1;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=42.84;QD=29.85;SOR=2.67;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:478,36,0:0,0,2,10
chr1	149379258	.	C	A	53.99	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=3;FS=0;FractionInformativeReads=1;MQ=28.67;QD=18;SOR=1.179;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:82,9,0:0,0,2,1
chr1	149398947	.	G	A	2273.15	PASS	AC=2;AF=1;AN=2;DP=81;FS=0;FractionInformativeReads=1;MQ=39.74;MQRankSum=1.354;QD=28.06;ReadPosRankSum=0.441;SOR=0.609;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:2,79:81:99:2301,201,0:0,2,45,34
chr1	149400309	.	C	G	1295.84	PASS	AC=2;AF=1;AN=2;DP=32;FS=0;FractionInformativeReads=1;MQ=45.16;QD=35.69;SOR=3.126;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1324,96,0:0,0,5,27
chr1	149665098	.	T	C	2015.99	PASS	AC=1;AF=0.5;AN=2;DP=1790;set=variant3-variant10-variant12-variant17-variant18-variant25-variant29-variant30-variant31-variant34-variant38-variant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:105,43:148:99:984,0,2801:72,33,31,12
chr1	149665167	.	A	G	5595.19	PASS	AC=1;AF=0.977;AN=2;DP=9015;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,177:217:99:4942,0,684:20,20,103,74
chr1	149665383	.	A	G	1556.55	PASS	AC=1;AF=0.523;AN=2;DP=6707;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,109:156:99:2871,0,934:14,33,34,75
chr1	149675876	.	A	G	89.23	PASS	AC=2;AF=1;AN=2;DP=206;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant19-variant20-variant21-variant22-variant24-filterInvariant25-filterInvariant26-filterInvariant28-filterInvariant30-variant31-variant33-filterInvariant34-filterInvariant35-variant36-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:143,12,0:0,0,4,0
chr1	149676075	.	G	A	71.06	PASS	AC=1;AF=0.987;AN=2;DP=174;FractionInformativeReads=1;MQRankSum=0.533;ReadPosRankSum=-1.381;set=filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-filterInvariant35-filterInvariant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:129,0,185:4,4,5,0
chr1	149676264	.	T	C	205.45	PASS	AC=1;AF=0.5;AN=2;DP=5330;set=filterInvariant3-variant5-filterInvariant7-variant9-filterInvariant12-filterInvariant17-filterInvariant18-filterInvariant22-filterInvariant24-filterInvariant26-filterInvariant28-filterInvariant31-variant35-filterInvariant36-filterInvariant37-filterInvariant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:241,33:274:72:72,0,6096:140,101,21,12
chr1	149676401	.	A	G	429.07	PASS	AC=1;AF=0.5;AN=2;DP=8607;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:116,86:202:99:1959,0,2603:51,65,27,59
chr1	149676508	.	A	T	919.38	PASS	AC=1;AF=0.583;AN=2;DP=358;set=variant3-variant10-variant12-variant17-variant18-variant25-variant29-variant30-variant31-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,10:36:99:260,0,744:6,20,0,10
chr1	149785120	.	C	A	33.65	PASS	AC=1;AF=0.5;AN=2;DP=4616;FractionInformativeReads=1;set=filterInvariant-variant4-variant5-variant8-variant9-variant13-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-filterInvariant32-variant34-variant35-variant36-filterInvariant38-filterInvariant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:149,30:179:99:812,0,36840:86,63,15,15
chr1	149785132	.	C	G	848.55	PASS	AC=1;AF=0.5;AN=2;DP=4648;FractionInformativeReads=1;set=variant4-variant5-variant8-variant9-variant13-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-filterInvariant32-variant34-filterInvariant35-variant36-filterInvariant38-filterInvariant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:161,30:191:99:751,0,48448:91,70,15,15
chr1	149785138	.	C	G	811.67	PASS	AC=1;AF=0.5;AN=2;DP=4703;FractionInformativeReads=1;set=variant4-variant5-variant8-variant9-variant13-filterInvariant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-filterInvariant32-filterInvariant34-filterInvariant35-variant36-filterInvariant38-filterInvariant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:162,29:191:99:706,0,51063:91,71,14,15
chr1	149785147	.	C	G	703.46	PASS	AC=1;AF=0.5;AN=2;DP=4717;FractionInformativeReads=1;set=variant4-variant5-filterInvariant8-variant9-variant13-filterInvariant15-filterInvariant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-filterInvariant30-filterInvariant32-filterInvariant34-filterInvariant35-variant36-filterInvariant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:163,29:192:99:700,0,53997:93,70,14,15
chr1	149785162	.	C	A	538.51	PASS	AC=1;AF=0.5;AN=2;DP=4441;FractionInformativeReads=1;set=filterInvariant4-variant5-filterInvariant8-filterInvariant9-variant13-filterInvariant15-filterInvariant16-filterInvariant18-variant19-variant22-variant23-variant24-variant25-variant30-filterInvariant32-filterInvariant34-filterInvariant35-variant36-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:185,28:213:99:586,0,62367:106,79,13,15
chr1	149785165	.	T	C	508.56	PASS	AC=1;AF=0.5;AN=2;DP=4428;FractionInformativeReads=1;set=filterInvariant4-variant5-filterInvariant8-filterInvariant9-variant13-filterInvariant15-filterInvariant16-filterInvariant18-filterInvariant19-variant22-variant23-variant24-filterInvariant25-variant30-filterInvariant32-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:190,26:216:99:592,0,62109:112,78,11,15
chr1	149815013	.	GCTCC	G,GCTCCCTCC	872.59	PASS	AC=1,0;AF=0.429,0.071;AN=2;DP=283;set=variant11-variant13-variant28-variant34-variant39-variant41-variant44	GT:DP:GQ:SB	0/1:42:99:10,11,8,13
chr1	149821912	.	CGGAG	C	1986.62	PASS	AC=1;AF=0.5;AN=2;DP=523;set=variant11-variant13-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:1007,0,1568:16,17,8,20
chr1	149871065	.	G	T	474.83	PASS	AC=1;AF=0.556;AN=2;DP=627;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant19-variant21-variant25-variant30-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,59:88:99:1400,0,669:15,14,31,28
chr1	149879505	.	C	T	227.43	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.342;FractionInformativeReads=1;MQ=60;MQRankSum=1.991;QD=5.55;ReadPosRankSum=0.473;SOR=0.99;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,12:41:99:256,0,777:17,12,8,4
chr1	149881173	.	A	C	1361.83	PASS	AC=1;AF=0.5;AN=2;DP=919;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant19-variant21-variant25-variant30-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:956,0,1110:20,25,21,21
chr1	149885583	.	A	G	1455.83	PASS	AC=2;AF=0.919;AN=2;DP=2151;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1408,135,0:0,0,24,21
chr1	149885800	.	G	A	247.12	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant19-variant21-variant25-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:309,0,261:3,7,4,8
chr1	149900985	.	CA	CAA,C	64.47	PASS	AC=0,1;AF=0.091,0.409;AN=2;DP=908;set=filterInvariant-variant3-variant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-variant10-variant13-variant17-variant18-variant24-variant25-variant26-filterInvariant28-variant29-filterInvariant31-filterInvariant33-variant34-variant37-filterInvariant41-variant44	GT:DP:GQ:SB	0/2:57:99:25,21,8,3
chr1	149905279	.	G	A	1036.85	PASS	AC=1;AF=0.5;AN=2;DP=485;FractionInformativeReads=1;MQ=60;set=variant9-variant13-variant20-variant33-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:650,0,726:15,13,16,6
chr1	149908108	.	A	G	1964.94	PASS	AC=2;AF=0.571;AN=2;DP=2602;MQ=60;set=variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3888,371,0:0,0,49,75
chr1	149912782	.	A	G	1632.21	PASS	AC=2;AF=1;AN=2;DP=2685;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,66:67:99:1882,190,0:1,0,33,33
chr1	149914683	.	G	A	3473.92	PASS	AC=2;AF=1;AN=2;DP=6439;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4469,469,0:0,0,82,75
chr1	149922308	.	GT	G	158.91	PASS	AC=1;AF=0.529;AN=2;DP=247;MQ=60;set=variant9-variant10-variant13-variant15-variant19-variant20-variant21-variant25-variant28-variant33-variant34-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:231,0,190:2,5,3,5
chr1	149931541	.	G	A	819.72	PASS	AC=1;AF=0.5;AN=2;DP=529;MQ=60;set=variant9-variant13-variant20-variant33-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,49:79:99:1115,0,726:20,10,28,21
chr1	149982626	.	A	G	370.46	PASS	AC=1;AF=0.528;AN=2;DP=787;MQ=60;set=variant9-variant10-variant13-variant15-variant19-variant20-variant21-variant25-variant28-variant30-variant33-variant34-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,19:47:99:493,0,740:10,18,8,11
chr1	150039678	.	G	A	2164.58	PASS	AC=2;AF=0.821;AN=2;DP=3541;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2937,278,0:0,0,49,44
chr1	150054676	.	A	G	511.84	PASS	AC=1;AF=0.5;AN=2;DP=89;FractionInformativeReads=1;MQ=60;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:530,0,405:13,3,14,6
chr1	150117533	.	G	A	5261.83	PASS	AC=2;AF=1;AN=2;DP=6264;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4885,435,0:0,0,38,108
chr1	150122493	.	T	C	1498.86	PASS	AC=2;AF=1;AN=2;DP=2214;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1351,138,0:0,0,19,27
chr1	150128425	.	C	T	832.5	PASS	AC=2;AF=0.821;AN=2;DP=1261;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1171,111,0:0,0,13,24
chr1	150129267	.	G	A	926.53	PASS	AC=2;AF=1;AN=2;DP=2060;FS=0;MQ=60;MQRankSum=1.54;ReadPosRankSum=0.385;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1414,125,0:0,0,9,33
chr1	150192506	.	CAAA	CAA,C,CA,CAAAA	323.52	PASS	AC=1,1,0,0;AF=0.136,0.091,0.303,0.015;AN=2;DP=4148;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant13-filterInvariant15-filterInvariant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	2/1:66:99:4,15,22,25
chr1	150193165	.	G	A	220.11	PASS	AC=1;AF=0.556;AN=2;DP=478;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant9-variant11-variant15-variant19-variant20-variant21-variant25-variant28-variant30-variant32-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:686,0,795:3,20,3,17
chr1	150199123	.	G	T	2096.96	PASS	AC=1;AF=0.721;AN=2;DP=2909;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,42:86:99:1143,0,1202:16,28,20,22
chr1	150246412	.	G	A	641.99	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=3.738;FractionInformativeReads=1;MQ=60;MQRankSum=-0.486;QD=10.88;ReadPosRankSum=-0.255;SOR=1.21;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,24:59:99:670,0,955:21,14,17,7
chr1	150248046	.	T	G	363.86	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=2.935;FractionInformativeReads=1;MQ=60;MQRankSum=1.479;QD=19.15;ReadPosRankSum=0.211;SOR=0.191;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:392,0,226:7,0,10,2
chr1	150252984	.	T	G	276.69	PASS	AC=2;AF=0.769;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:261,24,0:0,0,5,3
chr1	150254920	.	AG	AGG,A	268.66	PASS	AC=0,1;AF=0.533,0.033;AN=2;DP=327;MQ=60;set=variant-variant6-variant8-variant16-variant18-variant19-variant22-variant24-variant27-variant29-variant33-variant38-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:31:99:16,4,10,1
chr1	150255587	.	T	C	2501.26	PASS	AC=1;AF=0.756;AN=2;DP=2344;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:740,0,986:17,13,15,12
chr1	150258838	.	C	G	2945.71	PASS	AC=1;AF=0.75;AN=2;DP=3634;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,41:93:99:1153,0,1430:33,19,27,14
chr1	150266600	.	T	C	658.35	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.263;FractionInformativeReads=1;MQ=60;MQRankSum=1.195;QD=16.06;ReadPosRankSum=0.565;SOR=0.387;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:687,0,1205:8,15,8,10
chr1	150266609	.	A	G	652.33	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=1.232;FractionInformativeReads=1;MQ=60;MQRankSum=-1.096;QD=15.17;ReadPosRankSum=-1.145;SOR=0.417;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,18:43:99:681,0,1277:9,16,8,10
chr1	150281202	.	A	C	1765.6	PASS	AC=1;AF=0.8;AN=2;DP=2317;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,44:65:99:1502,0,670:21,0,38,6
chr1	150281441	.	C	CT	820.1	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=0;FractionInformativeReads=0.735;MQ=60;MQRankSum=-1.246;QD=8.04;ReadPosRankSum=-2.147;SOR=0.808;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,39:75:99:857,0,856:11,25,11,28
chr1	150281501	.	A	C	853.77	PASS	AC=1;AF=0.788;AN=2;DP=763;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:267,0,355:0,9,0,7
chr1	150297334	.	CT	C,CTT	132.08	PASS	AC=1,0;AF=0.483,0.017;AN=2;DP=1036;set=variant-variant4-variant5-variant8-variant10-variant12-variant13-variant14-filterInvariant15-variant16-filterInvariant17-variant18-filterInvariant19-variant21-variant22-filterInvariant24-variant25-variant27-variant28-filterInvariant29-variant30-variant31-variant33-variant35-filterInvariant36-variant37-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:39:99:10,9,12,8
chr1	150300727	.	T	C	673.68	PASS	AC=2;AF=0.676;AN=2;DP=1936;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1685,147,0:0,0,31,18
chr1	150301006	.	ATTTT	ATT,ATTTTT,A,AT,ATTTTTTTTT,ATTT,ATTTTTTTTTT	295.04	PASS	AC=0,0,0,1,0,0,0;AF=0.188,0.021,0.042,0.125,0.042,0.083,0.021;AN=2;DP=1105;set=variant4-filterInvariant7-variant8-variant10-variant12-variant14-variant15-variant19-variant21-variant24-variant28-variant29-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-filterInvariant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/4:12:44:3,2,0,7
chr1	150307270	.	T	G	164.58	PASS	AC=2;AF=0.681;AN=2;DP=531;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:460,36,0:0,0,11,1
chr1	150310557	.	A	G	488.36	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=4.452;FractionInformativeReads=1;MQ=60;MQRankSum=-2.309;QD=10.39;ReadPosRankSum=-0.372;SOR=0.267;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:517,0,690:18,6,14,9
chr1	150312549	.	G	A	449.36	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=1.423;FractionInformativeReads=1;MQ=60;MQRankSum=0.919;QD=13.62;ReadPosRankSum=-0.594;SOR=1.065;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:478,0,405:10,6,12,5
chr1	150316003	.	T	A	1338.46	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=1.562;FractionInformativeReads=1;MQ=60;MQRankSum=-0.725;QD=12.28;ReadPosRankSum=-0.272;SOR=0.904;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,62:109:99:1367,0,1063:22,25,26,36
chr1	150317239	.	CT	C	66.34	PASS	AC=2;AF=0.75;AN=2;DP=315;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant16-variant18-variant21-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:249,27,0:0,0,1,8
chr1	150321486	.	G	A	270.08	PASS	AC=1;AF=0.595;AN=2;DP=503;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant12-variant14-variant16-variant18-variant19-variant21-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:171,0,347:9,5,5,4
chr1	150389964	.	GA	G	367.31	PASS	AC=2;AF=0.676;AN=2;DP=1250;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:917,96,0:0,0,24,8
chr1	150413940	.	G	T	2537.28	PASS	AC=2;AF=0.676;AN=2;DP=6123;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:6592,581,0:0,0,103,91
chr1	150416913	.	A	G	268.37	PASS	AC=1;AF=0.568;AN=2;DP=669;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:469,0,312:3,9,3,12
chr1	150432870	.	GGTT	G,GGTTGTT	143.38	PASS	AC=2,0;AF=0.464,0.232;AN=2;DP=319;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:7:21:0,0,0,7
chr1	150445819	.	A	G	1553.67	PASS	AC=1;AF=0.595;AN=2;DP=3022;MQ=60;set=variant2-variant4-variant5-variant6-variant12-variant14-variant16-variant18-variant19-variant21-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:88,50:138:99:1329,0,2478:49,39,30,20
chr1	150446032	.	TAA	TAAA,TA,TAAAAAAAAAAA,TAAAAAAAAAA,T,TAAAAAA,TAAAAAAAAAAAA	166.75	PASS	AC=0,1,0,0,0,0,0;AF=0.043,0.329,0.086,0.043,0.014,0.014,0.014;AN=2;DP=4708;set=filterInvariant-variant2-variant3-variant6-variant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-variant14-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant22-filterInvariant23-variant24-variant26-variant27-filterInvariant28-variant29-variant31-variant32-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/2:83:99:14,19,18,32
chr1	150446067	.	C	T	2038.7	PASS	AC=2;AF=0.619;AN=2;DP=2557;set=variant2-variant4-variant5-variant6-variant12-variant14-variant16-variant18-variant19-variant21-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3462,330,0:0,0,57,56
chr1	150446874	.	CT	C	6067.68	PASS	AC=1;AF=0.5;AN=2;DP=386;FS=0.37;FractionInformativeReads=0.99;MQ=60;MQRankSum=1.429;QD=15.72;ReadPosRankSum=0.846;SOR=0.717;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:202,180:382:99:6105,0,6893:91,111,80,100
chr1	150447269	.	G	A	3482.62	PASS	AC=2;AF=0.676;AN=2;DP=8292;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,213:213:99:6741,637,0:0,0,99,114
chr1	150447398	.	A	G	1119	PASS	AC=1;AF=0.595;AN=2;DP=2408;set=variant2-variant4-variant5-variant6-variant12-variant14-variant16-variant18-variant19-variant21-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,81:139:99:2204,0,1393:21,37,30,51
chr1	150447462	.	C	T	1560.75	PASS	AC=1;AF=0.591;AN=2;DP=1664;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant12-variant14-variant16-variant18-variant19-variant21-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:1230,0,1049:12,20,16,27
chr1	150447848	.	G	A	1989.28	PASS	AC=1;AF=0.5;AN=2;DP=148;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.133;QD=13.44;ReadPosRankSum=-1.915;SOR=0.728;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:78,70:148:99:2018,0,2160:33,45,29,41
chr1	150448019	.	G	A	9513.43	PASS	AC=2;AF=1;AN=2;DP=11034;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,259:259:99:7859,775,0:0,0,139,120
chr1	150460168	.	A	G	225.69	PASS	AC=2;AF=0.662;AN=2;DP=533;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:667,57,0:0,0,13,6
chr1	150470182	.	A	G	1334.85	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=1.484;FractionInformativeReads=1;MQ=60;MQRankSum=-0.821;QD=11.61;ReadPosRankSum=1.589;SOR=0.547;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,54:115:99:1363,0,1367:28,33,27,27
chr1	150470322	.	C	A	272.38	PASS	AC=2;AF=0.619;AN=2;DP=687;FractionInformativeReads=1;set=variant2-variant4-variant5-variant6-variant12-variant14-variant16-variant18-variant19-variant21-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1043,93,0:0,0,9,22
chr1	150471848	.	A	AT	45.77	PASS	AC=2;AF=0.667;AN=2;DP=650;MQ=60;set=variant-filterInvariant4-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:397,45,0:0,0,5,10
chr1	150477061	.	C	T	2113.57	PASS	AC=1;AF=0.595;AN=2;DP=3390;MQ=60;set=variant2-variant4-variant5-variant6-variant12-variant14-variant16-variant18-variant19-variant21-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,71:139:99:1803,0,1878:37,31,35,36
chr1	150477250	.	G	A	2458.13	PASS	AC=1;AF=0.5;AN=2;DP=169;FS=2.723;FractionInformativeReads=1;MQ=60;MQRankSum=-0.678;QD=14.55;ReadPosRankSum=3.597;SOR=0.502;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,96:169:99:2486,0,1836:42,31,50,46
chr1	150481896	.	C	T	450.12	PASS	AC=1;AF=0.5;AN=2;DP=94;FractionInformativeReads=1;MQ=60;set=variant2-variant29-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:284,0,386:10,2,7,3
chr1	150482162	.	A	C	436.84	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2007;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:132,41:173:99:166,0,2502:41,91,36,5
chr1	150482639	.	C	T	1172.42	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=0.729;FractionInformativeReads=1;MQ=60;MQRankSum=-0.801;QD=11.49;ReadPosRankSum=-0.714;SOR=0.776;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,48:102:99:1201,0,1338:27,27,25,23
chr1	150482738	.	G	A	146.24	PASS	AC=1;AF=0.594;AN=2;DP=827;MQ=60;set=variant-variant2-variant6-variant16-variant18-variant19-variant24-variant27-variant29-variant31-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:881,0,797:11,17,7,22
chr1	150483236	.	A	C	72.36	PASS	AC=2;AF=0.676;AN=2;DP=797;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:769,63,0:0,0,18,3
chr1	150483355	.	C	T	990.78	PASS	AC=1;AF=0.595;AN=2;DP=2288;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant12-variant14-variant16-variant18-variant19-variant21-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,33:94:99:809,0,1601:37,24,21,12
chr1	150483840	.	C	T	440.81	PASS	AC=1;AF=0.667;AN=2;DP=2009;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:1014,0,849:14,12,18,14
chr1	150484016	.	G	A	733.65	PASS	AC=1;AF=0.5;AN=2;DP=97;FS=7.111;FractionInformativeReads=1;MQ=60;MQRankSum=-1.423;QD=7.56;ReadPosRankSum=-1.07;SOR=0.964;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,32:97:99:762,0,1828:37,28,13,19
chr1	150484395	.	ACC	A	1319.24	PASS	AC=2;AF=0.681;AN=2;DP=2665;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2184,157,0:0,0,25,27
chr1	150484555	.	C	G	105.45	PASS	AC=1;AF=0.671;AN=2;DP=721;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,15:19:84:409,0,84:2,2,4,11
chr1	150484987	.	G	A	1703.24	PASS	AC=2;AF=0.636;AN=2;DP=4169;MQ=60;set=variant2-variant4-variant5-variant6-variant12-variant14-variant16-variant18-variant19-variant21-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:5685,535,0:0,0,91,88
chr1	150485053	.	G	GTC	2106.24	PASS	AC=1;AF=0.5;AN=2;DP=274;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,71:149:99:2780,0,3031:35,43,35,36
chr1	150485176	.	C	T	1645.16	PASS	AC=1;AF=0.5;AN=2;DP=153;FS=2.857;FractionInformativeReads=1;MQ=60;MQRankSum=1.485;QD=10.75;ReadPosRankSum=0.584;SOR=0.713;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:83,70:153:99:1673,0,2205:44,39,33,37
chr1	150485566	.	T	G	141.61	PASS	AC=2;AF=0.676;AN=2;DP=805;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:60:891,60,0:0,0,11,8
chr1	150485571	.	T	C	536.62	PASS	AC=2;AF=1;AN=2;DP=1036;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:969,66,0:0,0,14,8
chr1	150485984	.	A	C	175.1	PASS	AC=1;AF=0.5;AN=2;DP=585;MQ=60;set=filterInvariant3-filterInvariant4-variant7-filterInvariant10-variant11-filterInvariant17-filterInvariant19-filterInvariant20-variant23-variant24-filterInvariant27-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:46,14:60:65:65,0,979:17,29,14,0
chr1	150485994	.	A	C	161.65	PASS	AC=1;AF=0.5;AN=2;DP=405;MQ=60;set=variant3-variant4-variant9-variant19-filterInvariant23-variant24-filterInvariant29-filterInvariant37-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:36,17:53:99:320,0,1056:8,28,17,0
chr1	150486239	.	C	G	1478.17	PASS	AC=1;AF=0.5;AN=2;DP=196;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,47:83:99:1381,0,916:12,24,14,33
chr1	150486381	.	G	C	422	PASS	AC=1;AF=0.5;AN=2;DP=216;MQ=60;set=variant4-variant5-variant6-variant12-filterInvariant14-variant18-variant21-variant28-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:127,0,192:1,5,0,4
chr1	150522242	.	T	C	288.82	PASS	AC=1;AF=0.735;AN=2;DP=818;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:99:244,0,138:0,4,6,5
chr1	150522471	.	C	CTG	682.4	PASS	AC=1;AF=0.735;AN=2;DP=1839;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:866,0,723:10,9,11,11
chr1	150524367	.	CA	C,CAA	63.76	PASS	AC=1,0;AF=0.4,0.1;AN=2;DP=620;set=filterInvariant2-filterInvariant4-variant5-variant6-filterInvariant8-variant13-variant20-filterInvariant22-filterInvariant31-filterInvariant32-variant33-variant37-variant41-filterInvariant42-variant44	GT:DP:GQ:SB	0/1:36:99:16,6,8,6
chr1	150526044	.	G	C	467.63	PASS	AC=1;AF=0.6;AN=2;DP=4311;MQ=60;set=variant-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,61:132:99:1486,0,1780:32,39,28,33
chr1	150526406	.	C	T	2325.74	PASS	AC=1;AF=0.595;AN=2;DP=3515;MQ=60;set=variant-variant4-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant30-variant32-variant34-variant35-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:95,89:184:99:2245,0,2422:49,46,46,43
chr1	150528090	.	G	GACAC	694.07	PASS	AC=1;AF=0.645;AN=2;DP=3087;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,40:74:99:1577,0,1308:14,20,21,19
chr1	150528118	.	T	TACAC,TACACAC	633.13	PASS	AC=1,0;AF=0.632,0.013;AN=2;DP=2424;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:63:99:10,16,18,19
chr1	150528175	.	GCA	G	248.46	PASS	AC=1;AF=0.645;AN=2;DP=1118;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,19:28:99:749,0,321:3,6,8,11
chr1	150528197	.	A	G	706.51	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:163,0,682:7,9,3,5
chr1	150528208	.	C	T	159.39	PASS	AC=2;AF=0.607;AN=2;DP=504;FractionInformativeReads=1;set=variant-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:69:777,69,0:0,0,8,14
chr1	150529322	.	T	TAA	1986.04	PASS	AC=2;AF=0.92;AN=2;DP=2499;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2209,153,0:0,0,19,31
chr1	150530433	.	C	T	823.38	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=7.297;FractionInformativeReads=1;MQ=60;MQRankSum=0.809;QD=13.07;ReadPosRankSum=-0.505;SOR=1.685;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,28:63:99:852,0,978:20,15,21,7
chr1	150531008	.	T	C	2370.84	PASS	AC=2;AF=0.92;AN=2;DP=8443;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5665,560,0:0,0,105,82
chr1	150531050	.	G	A	3150.1	PASS	AC=2;AF=0.86;AN=2;DP=9670;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:6344,640,0:0,0,122,93
chr1	150531170	.	C	T	6137.71	PASS	AC=2;AF=1;AN=2;DP=9825;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,239:239:99:6793,715,0:0,0,103,136
chr1	150531380	.	T	C	723.51	PASS	AC=1;AF=0.643;AN=2;DP=1929;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,19:56:99:515,0,918:19,18,10,9
chr1	150532586	.	C	A	2420.08	PASS	AC=1;AF=0.5;AN=2;DP=184;FS=1.148;FractionInformativeReads=1;MQ=60;MQRankSum=1.351;QD=13.15;ReadPosRankSum=1.32;SOR=0.819;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:88,96:184:99:2448,0,1995:43,45,44,52
chr1	150533425	.	T	A	1289	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=1.033;FractionInformativeReads=1;MQ=60;MQRankSum=0.992;QD=19.24;ReadPosRankSum=0.331;SOR=0.884;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,42:67:99:1317,0,576:17,8,30,12
chr1	150547747	.	G	A	780.26	PASS	AC=2;AF=0.677;AN=2;DP=1265;MQ=60;set=variant-variant4-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1484,131,0:0,0,16,28
chr1	150548887	.	C	CCTAT	9352.87	PASS	AC=2;AF=1;AN=2;DP=7788;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,171:171:99:7894,534,0:0,0,94,77
chr1	150549585	.	A	G	4468.23	PASS	AC=1;AF=0.5;AN=2;DP=307;FS=0.419;FractionInformativeReads=1;MQ=60;MQRankSum=3.586;QD=14.55;ReadPosRankSum=1.521;SOR=0.728;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:135,172:307:99:4496,0,3640:60,75,75,97
chr1	150550019	.	T	TA	1632.1	PASS	AC=2;AF=1;AN=2;DP=2253;FS=0;MQ=60;MQRankSum=1.555;ReadPosRankSum=1.466;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1822,150,0:0,0,15,35
chr1	150551792	.	T	C	1971.95	PASS	AC=1;AF=0.5;AN=2;DP=182;FS=3.395;FractionInformativeReads=1;MQ=60;MQRankSum=1.658;QD=10.83;ReadPosRankSum=-2.888;SOR=0.611;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:97,85:182:99:2000,0,2223:53,44,41,44
chr1	150552263	.	GGCCGGGGCCGGGGCCTGA	G	521.99	PASS	AC=2;AF=0.75;AN=2;DP=420;set=variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant25-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:32:278,32,0:0,0,4,6
chr1	150600181	.	C	T	645.9	PASS	AC=2;AF=0.73;AN=2;DP=611;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:688,66,0:0,0,7,15
chr1	150618961	.	T	G	7420.88	PASS	AC=1;AF=0.662;AN=2;DP=7361;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,113:244:99:3066,0,3593:70,61,67,46
chr1	150619602	.	T	C	9747.98	PASS	AC=2;AF=1;AN=2;DP=11021;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,247:247:99:7824,740,0:0,0,119,128
chr1	150620569	.	C	G	1623.04	PASS	AC=1;AF=0.69;AN=2;DP=4642;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:98,73:171:99:1751,0,2422:43,55,27,46
chr1	150666797	.	G	A	41.5	PASS	AC=1;AF=0.679;AN=2;DP=241;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:181,0,110:1,3,0,5
chr1	150669414	.	T	G	353.06	PASS	AC=1;AF=0.672;AN=2;DP=575;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:170,0,290:8,1,5,2
chr1	150670484	.	T	G	1226	PASS	AC=1;AF=0.672;AN=2;DP=1701;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:759,0,597:16,12,18,9
chr1	150671243	.	AC	A	1141.43	PASS	AC=1;AF=0.69;AN=2;DP=1278;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:557,0,546:6,10,6,11
chr1	150676485	.	T	C	473.11	PASS	AC=1;AF=0.66;AN=2;DP=319;FractionInformativeReads=1;set=variant-variant2-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,3:14:85:85,0,331:8,3,3,0
chr1	150678910	.	T	C	265.32	PASS	AC=1;AF=0.672;AN=2;DP=650;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:568,0,374:11,1,15,2
chr1	150679358	.	C	T	646.57	PASS	AC=1;AF=0.69;AN=2;DP=1031;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,15:44:99:301,0,824:20,9,8,7
chr1	150686633	.	A	T	389.42	PASS	AC=1;AF=0.579;AN=2;DP=662;MQ=60;set=variant-variant2-variant4-filterInvariant8-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant28-variant30-variant34-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:266,0,541:6,14,4,7
chr1	150689984	.	A	AT	115.75	PASS	AC=1;AF=0.773;AN=2;DP=135;set=variant3-variant17-variant20-variant24-variant25-variant26-variant29-variant35-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:29:135,0,29:0,2,1,5
chr1	150692146	.	A	G	83.49	PASS	AC=1;AF=0.5;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.358;QD=16.7;ReadPosRankSum=-0.358;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:76:112,0,76:0,2,0,3
chr1	150702663	.	A	C	1374.79	PASS	AC=1;AF=0.69;AN=2;DP=2136;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,44:82:99:1256,0,1104:29,9,33,11
chr1	150702717	.	G	C	1966.5	PASS	AC=1;AF=0.69;AN=2;DP=5062;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:88,85:173:99:2065,0,2327:57,31,55,30
chr1	150703034	.	CAGA	C	614.49	PASS	AC=1;AF=0.672;AN=2;DP=1332;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:1280,0,1556:18,14,16,17
chr1	150705755	.	G	A	207.15	PASS	AC=1;AF=0.69;AN=2;DP=357;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:54:406,0,54:2,2,1,10
chr1	150727539	.	G	A	1624.45	PASS	AC=1;AF=0.672;AN=2;DP=5007;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,66:168:99:1634,0,2639:51,51,32,34
chr1	150730184	.	C	A	276.05	PASS	AC=1;AF=0.69;AN=2;DP=746;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:226,0,347:9,0,6,1
chr1	150730279	.	A	G	1512.13	PASS	AC=1;AF=0.672;AN=2;DP=3507;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,48:122:99:1181,0,1956:46,28,30,18
chr1	150738197	.	C	T	1693.89	PASS	AC=1;AF=0.672;AN=2;DP=1149;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:814,0,777:17,3,20,7
chr1	150738200	.	A	G	488.2	PASS	AC=1;AF=0.672;AN=2;DP=1201;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:630,0,1071:20,7,17,4
chr1	150738483	.	CGGGA	C	174.95	PASS	AC=1;AF=0.672;AN=2;DP=745;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:402,0,1207:2,18,2,9
chr1	150771703	.	T	C	3074.51	PASS	AC=2;AF=0.977;AN=2;DP=4453;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2227,222,0:0,0,42,32
chr1	150779481	.	TTC	TCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTC,T,TCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTC	394.19	PASS	AC=0,0,0,0,0,0,0,1;AF=0.083,0.389,0.028,0.028,0.083,0.056,0.028,0.028;AN=2;DP=291;set=variant2-variant3-variant5-variant7-variant10-variant12-variant19-variant24-variant25-variant26-variant30-variant31-variant32-variant35-variant36-variant41-variant43-variant44	GT:DP:GQ:SB	0/8:11:99:2,3,1,5
chr1	150779755	.	C	T	3709.04	PASS	AC=2;AF=0.977;AN=2;DP=5264;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3717,376,0:0,0,68,58
chr1	150782110	.	CAAAAAAAAAAAAAA	C,CAAAAAAAAAAAA,CAAAAAA,CAAAA,CAAAAAAAAAAAAA,CAAAAAAAAAAA,CAAAAAAAA,CAAAAAAAAAA	164.33	PASS	AC=0,0,0,1,0,0,0,0;AF=0.074,0.044,0.103,0.324,0.029,0.044,0.059,0.015;AN=2;DP=384;set=variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:12:99:3,0,8,1
chr1	150782122	.	A	C	421.09	PASS	AC=1;AF=0.667;AN=2;DP=260;set=variant3-variant5-variant7-variant11-variant14-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant35-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:141,0,111:3,0,5,0
chr1	150783108	.	TA	T	614.35	PASS	AC=1;AF=0.5;AN=2;DP=5596;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,57:101:99:875,0,627:22,22,29,28
chr1	150783934	.	GCACA	GCACACACA,GCACACACACA,G,GCGCACACACA,GCACACACACACACACA,GCACACA,GCACACACACACA,GCACACACACACACA	1292.78	PASS	AC=1,1,0,0,0,0,0,0;AF=0.42,0.409,0.011,0.011,0.023,0.011,0.034,0.011;AN=2;DP=1941;set=Intersection	GT:DP:GQ:SB	1/2:19:99:1,1,5,12
chr1	150783985	.	T	C	493.84	PASS	AC=1;AF=0.672;AN=2;DP=1154;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:665,0,409:7,7,8,13
chr1	150789961	.	A	T	380.17	PASS	AC=1;AF=0.741;AN=2;DP=438;set=variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:206,0,188:3,5,3,7
chr1	150801466	.	T	C	1317.92	PASS	AC=2;AF=0.953;AN=2;DP=1515;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1243,114,0:0,0,26,12
chr1	150804401	.	GA	G,GAA	408.76	PASS	AC=0,1;AF=0.211,0.329;AN=2;DP=1531;set=variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-variant31-filterInvariant33-filterInvariant34-variant35-variant36-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:26:99:3,11,2,10
chr1	150804429	.	A	C	273.78	PASS	AC=1;AF=0.672;AN=2;DP=785;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:322,0,304:3,8,2,8
chr1	150804649	.	T	C	540.89	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=4.17;FractionInformativeReads=1;MQ=60;MQRankSum=-0.264;QD=16.9;ReadPosRankSum=-0.529;SOR=1.781;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:569,0,459:11,4,15,2
chr1	150808889	.	C	G	754.71	PASS	AC=1;AF=0.7;AN=2;DP=2378;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,31:72:99:846,0,1056:19,22,12,19
chr1	150811794	.	T	C	453.61	PASS	AC=1;AF=0.7;AN=2;DP=1042;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:424,0,473:13,2,11,5
chr1	150825511	.	C	T	447.01	PASS	AC=1;AF=0.704;AN=2;DP=301;FractionInformativeReads=1;set=variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:136,0,367:3,8,1,4
chr1	150849071	.	ACC	A,AC,ACCC	540.37	PASS	AC=0,1,0;AF=0.239,0.67,0.045;AN=2;DP=1530;MQ=60;set=Intersection	GT:DP:GQ:SB	0/2:42:99:8,8,13,13
chr1	150923774	.	T	A	810.08	PASS	AC=1;AF=0.685;AN=2;DP=1787;MQ=60;set=variant2-variant3-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,34:62:99:915,0,746:15,13,24,10
chr1	150931882	.	C	T	492.45	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.529;QD=15.39;ReadPosRankSum=0.566;SOR=0.801;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:521,0,451:5,12,4,11
chr1	150932953	.	GAA	GA,G	48.38	PASS	AC=1,0;AF=0.458,0.042;AN=2;DP=171;MQ=60;set=variant3-variant7-variant9-variant10-variant16-variant17-variant25-variant31-variant33-variant35-variant41-variant42	GT:DP:GQ:SB	0/1:10:52:3,1,6,0
chr1	150935872	.	A	G	823.81	PASS	AC=1;AF=0.714;AN=2;DP=2173;MQ=60;set=variant2-variant3-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,27:78:99:733,0,1231:29,22,18,9
chr1	150937594	.	T	C	1176.88	PASS	AC=1;AF=0.714;AN=2;DP=1912;set=variant2-variant3-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,24:78:99:432,0,1481:33,21,11,13
chr1	150937661	.	A	G	1917.43	PASS	AC=1;AF=0.685;AN=2;DP=3742;FractionInformativeReads=1;set=variant2-variant3-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:102,53:155:99:1047,0,2473:49,53,25,28
chr1	150937771	.	T	A	2127.11	PASS	AC=2;AF=0.977;AN=2;DP=2981;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2658,261,0:0,0,41,46
chr1	150938571	.	G	A	450.09	PASS	AC=1;AF=0.685;AN=2;DP=1643;MQ=60;set=variant2-variant3-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,30:45:99:816,0,399:12,3,17,13
chr1	150938616	.	G	A	1902.61	PASS	AC=2;AF=1;AN=2;DP=3369;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2036,186,0:0,0,37,25
chr1	150941381	.	C	T	322.55	PASS	AC=1;AF=0.714;AN=2;DP=874;MQ=60;set=variant2-variant3-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,25:38:99:707,0,405:11,2,17,8
chr1	150944541	.	A	G	277.7	PASS	AC=2;AF=1;AN=2;DP=605;FS=0;MQ=60;MQRankSum=1.542;ReadPosRankSum=1.349;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:489,39,0:0,0,3,10
chr1	150947256	.	C	G	580.88	PASS	AC=1;AF=0.685;AN=2;DP=670;set=variant2-variant3-variant7-variant10-variant11-variant12-variant13-filterInvariant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,6:25:83:83,0,556:6,13,2,4
chr1	150954671	.	G	A	830.36	PASS	AC=1;AF=0.536;AN=2;DP=1249;MQ=60;set=variant-variant4-variant5-variant6-variant11-variant14-variant15-variant18-variant21-variant22-variant28-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,40:85:99:1115,0,1263:30,15,26,14
chr1	150955703	.	G	A	1723.01	PASS	AC=1;AF=0.5;AN=2;DP=106;FS=0.75;FractionInformativeReads=1;MQ=60;MQRankSum=-0.986;QD=16.25;ReadPosRankSum=-0.208;SOR=0.581;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,65:106:99:1751,0,1027:24,17,36,29
chr1	150958836	.	A	G	825.15	PASS	AC=1;AF=0.5;AN=2;DP=1256;MQ=60;set=variant-variant4-variant5-variant6-variant11-variant18-variant21-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:79,56:135:99:1264,0,2055:42,37,28,28
chr1	150967211	.	G	T	865.25	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=1.007;FractionInformativeReads=1;MQ=60;MQRankSum=-1.178;QD=12.72;ReadPosRankSum=1.448;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:893,0,920:9,24,11,24
chr1	150968188	.	A	G	57.97	PASS	AC=1;AF=0.989;AN=2;DP=274;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.731;ReadPosRankSum=-0.731;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:31:128,0,31:0,1,1,3
chr1	150969567	.	A	G	2281.78	PASS	AC=1;AF=0.989;AN=2;DP=4069;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,40:83:99:960,0,1095:23,20,18,22
chr1	150969992	.	T	C	4514.47	PASS	AC=1;AF=0.932;AN=2;DP=8272;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:94,86:180:99:2110,0,2188:50,44,47,39
chr1	150970577	.	G	T	1536.64	PASS	AC=1;AF=0.989;AN=2;DP=3344;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,39:92:99:1008,0,1289:31,22,21,18
chr1	150970836	.	T	A	1233.91	PASS	AC=1;AF=0.677;AN=2;DP=1453;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:795,0,649:4,17,6,19
chr1	150972538	.	G	A	2595.09	PASS	AC=2;AF=1;AN=2;DP=2495;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1375,140,0:0,0,22,25
chr1	150973514	.	G	A	1199.25	PASS	AC=1;AF=0.845;AN=2;DP=1175;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:292,0,445:9,5,8,1
chr1	150974162	.	G	A	3291.53	PASS	AC=1;AF=0.814;AN=2;DP=5241;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,60:139:99:1265,0,1939:39,40,28,32
chr1	150975108	.	T	C	3128.44	PASS	AC=1;AF=0.932;AN=2;DP=4944;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:76,45:121:99:1290,0,2183:40,36,21,24
chr1	150981201	.	A	T	976.55	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.817;QD=12.52;ReadPosRankSum=-2.561;SOR=0.723;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,36:78:99:1005,0,1241:19,23,16,20
chr1	150981228	.	C	T	680.92	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=3.786;FractionInformativeReads=0.982;MQ=60;MQRankSum=-0.263;QD=12.16;ReadPosRankSum=1.061;SOR=0.938;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:709,0,920:14,17,14,10
chr1	150981460	.	A	G	1392.46	PASS	AC=1;AF=0.5;AN=2;DP=278;FractionInformativeReads=1;MQ=60;set=variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,64:137:99:1485,0,1810:31,42,27,37
chr1	150981620	.	C	T	328.45	PASS	AC=2;AF=1;AN=2;DP=455;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:551,39,0:0,0,2,11
chr1	150990466	.	C	CAT	1247.11	PASS	AC=1;AF=0.706;AN=2;DP=2291;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,32:60:99:1193,0,1075:12,16,12,20
chr1	150990825	.	A	G	506.5	PASS	AC=2;AF=0.791;AN=2;DP=613;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:910,78,0:0,0,20,6
chr1	150991285	.	A	G	849.09	PASS	AC=2;AF=0.849;AN=2;DP=945;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:875,69,0:0,0,3,20
chr1	150997842	.	T	A	218.42	PASS	AC=1;AF=0.559;AN=2;DP=218;MQ=60;set=variant-variant2-variant8-variant9-variant10-variant15-variant16-variant25-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:268,0,144:4,0,7,2
chr1	150997940	.	T	C	530.44	PASS	AC=1;AF=0.718;AN=2;DP=1731;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:853,0,570:13,11,21,9
chr1	150998221	.	ATT	AT,A	459.65	PASS	AC=2,0;AF=0.731,0.013;AN=2;DP=1769;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:32:96:0,0,9,23
chr1	150999863	.	A	G	2772.08	PASS	AC=1;AF=0.652;AN=2;DP=5678;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,110:177:99:2963,0,1594:25,42,43,67
chr1	151001583	.	G	A	861.29	PASS	AC=2;AF=0.825;AN=2;DP=880;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:71:808,71,0:0,0,3,21
chr1	151006539	.	C	A	2175.29	PASS	AC=2;AF=0.884;AN=2;DP=5113;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3635,374,0:0,0,58,67
chr1	151008928	.	G	A	196.77	PASS	AC=2;AF=0.929;AN=2;DP=191;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:309,21,0:0,0,5,2
chr1	151015299	.	G	GA	187.98	PASS	AC=2;AF=0.882;AN=2;DP=506;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:36:293,36,0:0,0,9,2
chr1	151017413	.	G	A	773.41	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=1.868;FractionInformativeReads=1;MQ=60;MQRankSum=0.342;QD=10.04;ReadPosRankSum=1.402;SOR=0.783;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,37:77:99:802,0,899:19,21,20,17
chr1	151018861	.	A	G	936.83	PASS	AC=2;AF=0.833;AN=2;DP=755;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:86:1050,86,0:0,0,19,10
chr1	151019180	.	A	G	3279.75	PASS	AC=2;AF=0.875;AN=2;DP=4026;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3448,327,0:0,0,50,59
chr1	151024688	.	T	G	1138.08	PASS	AC=2;AF=1;AN=2;DP=1383;FS=0;MQ=60;MQRankSum=0.612;ReadPosRankSum=1.019;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1312,132,0:0,0,22,22
chr1	151026815	.	C	T	3590.79	PASS	AC=2;AF=0.875;AN=2;DP=4144;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,78:80:99:2456,191,0:1,1,35,43
chr1	151028234	.	G	T	3039.34	PASS	AC=2;AF=1;AN=2;DP=5315;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3931,362,0:0,0,49,72
chr1	151030172	.	AACACACACACACACACACACACACAC	AACACACACACACAC,AACACACACACACACACACAC,AACACACACACACACAC,AACACACACACACACACACACAC,AACACACACACAC,A,AACACACACACACACACACACACAC	35.31	PASS	AC=1,0,1,0,0,0,0;AF=0.324,0.108,0.27,0.054,0.054,0.027,0.081;AN=2;DP=282;FS=0;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:9:99:0,0,8,1
chr1	151030848	.	A	G	687.57	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.271;QD=14.95;ReadPosRankSum=-1.03;SOR=0.763;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:716,0,539:8,12,10,16
chr1	151031476	.	T	A	1281.1	PASS	AC=2;AF=0.875;AN=2;DP=2316;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1896,174,0:0,0,30,28
chr1	151031667	.	T	C	2701.97	PASS	AC=2;AF=0.888;AN=2;DP=4135;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3667,330,0:0,0,59,51
chr1	151032150	.	C	G	5817.84	PASS	AC=2;AF=1;AN=2;DP=7917;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4491,436,0:0,0,79,67
chr1	151039609	.	A	G	1288.83	PASS	AC=2;AF=0.888;AN=2;DP=1038;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:835,69,0:0,0,19,4
chr1	151040435	.	G	A	9887.61	PASS	AC=2;AF=0.833;AN=2;DP=9949;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,255:255:99:8004,764,0:0,0,126,129
chr1	151070252	.	CA	C	744.23	PASS	AC=2;AF=0.833;AN=2;DP=1907;set=variant-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,47:48:99:1176,117,0:1,0,37,10
chr1	151083724	.	CT	CTT,C	360.75	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=166;set=variant3-filterInvariant41	GT:DP:GQ:SB	0/2:52:85:16,27,2,7
chr1	151091181	.	A	G	5443.06	PASS	AC=2;AF=0.875;AN=2;DP=7292;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5144,518,0:0,0,80,93
chr1	151093945	.	A	G	304.78	PASS	AC=2;AF=0.956;AN=2;DP=262;FS=0;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:299,24,0:0,0,1,7
chr1	151093983	.	T	C	182.97	PASS	AC=2;AF=0.955;AN=2;DP=176;FS=0;FractionInformativeReads=1;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:204,15,0:0,0,0,5
chr1	151096924	.	CT	C,CTT	321.47	PASS	AC=1,0;AF=0.487,0.013;AN=2;DP=3326;set=variant-filterInvariant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-variant31-filterInvariant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:85:99:39,16,17,13
chr1	151097499	.	TTTAG	T	1702.86	PASS	AC=1;AF=0.611;AN=2;DP=1953;MQ=60;set=variant-variant4-variant6-variant8-variant12-variant14-variant17-variant19-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,46:100:99:1756,0,2803:23,31,18,28
chr1	151097716	.	G	C	3735.56	PASS	AC=2;AF=1;AN=2;DP=4830;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:3930,388,0:0,0,72,58
chr1	151104055	.	C	T	76.41	PASS	AC=2;AF=0.924;AN=2;DP=228;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:280,27,0:0,0,6,3
chr1	151104078	.	C	T	79.61	PASS	AC=1;AF=0.708;AN=2;DP=221;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant12-variant13-variant17-variant19-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:70:70,0,120:3,2,2,1
chr1	151104598	.	A	G	1977.6	PASS	AC=2;AF=0.875;AN=2;DP=3189;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2064,195,0:0,0,29,36
chr1	151104950	.	G	A	4188.73	PASS	AC=2;AF=0.784;AN=2;DP=4759;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4008,385,0:0,0,78,51
chr1	151105146	.	C	T	1786.27	PASS	AC=1;AF=0.5;AN=2;DP=154;FS=2.082;FractionInformativeReads=0.994;MQ=60;MQRankSum=1.218;QD=11.6;ReadPosRankSum=0.031;SOR=0.889;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,73:153:99:1815,0,2132:32,48,26,47
chr1	151105824	.	C	G	2767.25	PASS	AC=2;AF=0.85;AN=2;DP=4151;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2996,296,0:0,0,51,48
chr1	151108137	.	T	G	1891.68	PASS	AC=2;AF=0.863;AN=2;DP=4992;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4187,405,0:0,0,75,60
chr1	151114882	.	C	CT	1867.97	PASS	AC=2;AF=0.85;AN=2;DP=3251;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2825,229,0:0,0,44,32
chr1	151115186	.	C	T	1361.1	PASS	AC=2;AF=0.784;AN=2;DP=2364;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,43:45:99:1407,114,0:2,0,16,27
chr1	151131091	.	A	G	588.71	PASS	AC=1;AF=0.6;AN=2;DP=1102;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant18-variant21-variant28-variant30-variant31-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:416,0,711:14,13,10,6
chr1	151132714	.	CA	CAAAAAAAAAAA,CAAAAAAAA,CAAAAAAAAAAAAAA,C	185.01	PASS	AC=0,0,0,1;AF=0.2,0.1,0.1,0.2;AN=2;DP=44;FS=0;set=variant12-variant15-variant22-variant23-variant41	GT:DP:GQ:SB	0/4:11:70:4,1,5,1
chr1	151133265	.	T	A	641.54	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=2.034;FractionInformativeReads=1;MQ=60;MQRankSum=-1.647;QD=9.3;ReadPosRankSum=-0.894;SOR=0.997;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,29:69:99:670,0,1042:22,18,18,11
chr1	151138550	.	T	TC	845.91	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=4.501;FractionInformativeReads=0.962;MQ=60;MQRankSum=-1.425;QD=10.85;ReadPosRankSum=-1.777;SOR=0.905;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,33:75:99:883,0,1213:19,23,19,14
chr1	151146186	.	C	G	965.03	PASS	AC=2;AF=0.977;AN=2;DP=2791;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2281,204,0:0,0,22,46
chr1	151146276	.	T	C	157.38	PASS	AC=2;AF=0.977;AN=2;DP=785;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:880,69,0:0,0,6,17
chr1	151149601	.	A	G	449.11	PASS	AC=2;AF=1;AN=2;DP=875;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:884,78,0:0,0,6,20
chr1	151204404	.	G	C	1035.64	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=1.222;FractionInformativeReads=1;MQ=60;MQRankSum=-0.345;QD=15.46;ReadPosRankSum=-0.546;SOR=0.472;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,35:67:99:1064,0,912:5,27,7,28
chr1	151205303	.	A	G	409.28	PASS	AC=2;AF=0.813;AN=2;DP=1357;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1614,114,0:0,0,1,37
chr1	151209063	.	C	T	1061.19	PASS	AC=2;AF=0.813;AN=2;DP=4645;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3589,342,0:0,0,72,42
chr1	151209297	.	CTT	CTTTT,C,CTTT,CTTTTT,CT	296.7	PASS	AC=1,0,0,0,0;AF=0.286,0.036,0.143,0.036,0.036;AN=2;DP=932;set=variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant23-variant24-variant25-filterInvariant26-variant27-filterInvariant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:16:99:3,5,2,6
chr1	151210789	.	C	T	1395.16	PASS	AC=2;AF=0.775;AN=2;DP=4451;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2352,236,0:0,0,37,42
chr1	151212399	.	C	CCTT	1003.35	PASS	AC=2;AF=0.909;AN=2;DP=3247;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3796,261,0:0,0,58,23
chr1	151220596	.	T	C	1645.83	PASS	AC=2;AF=1;AN=2;DP=2032;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.87;ReadPosRankSum=-0.606;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1386,126,0:0,0,23,19
chr1	151220893	.	AAG	A	3236.01	PASS	AC=2;AF=0.775;AN=2;DP=7435;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:7390,503,0:0,0,83,84
chr1	151227371	.	A	G	464.36	PASS	AC=2;AF=0.898;AN=2;DP=1241;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1240,93,0:0,0,4,27
chr1	151237589	.	TC	T	1292.91	PASS	AC=2;AF=0.813;AN=2;DP=4905;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3920,379,0:0,0,63,63
chr1	151238222	.	G	A	450.93	PASS	AC=2;AF=0.775;AN=2;DP=1710;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2033,167,0:0,0,6,50
chr1	151239051	.	T	C	1295.24	PASS	AC=2;AF=0.813;AN=2;DP=4163;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3171,290,0:0,0,38,59
chr1	151239570	.	C	T	1081.12	PASS	AC=2;AF=0.775;AN=2;DP=4561;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4006,377,0:0,0,69,57
chr1	151240008	.	A	G	318.24	PASS	AC=2;AF=0.8;AN=2;DP=1462;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1088,99,0:0,0,9,24
chr1	151254036	.	T	A	1103.95	PASS	AC=1;AF=0.5;AN=2;DP=272;FractionInformativeReads=1;MQ=60;set=variant20-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,42:80:99:1183,0,1058:26,12,31,11
chr1	151254041	.	T	C	1289.44	PASS	AC=2;AF=0.852;AN=2;DP=4436;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:3326,255,0:0,0,59,26
chr1	151263782	.	A	G	731.36	PASS	AC=2;AF=0.732;AN=2;DP=2579;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2081,185,0:0,0,34,28
chr1	151264513	.	A	G	1051.48	PASS	AC=2;AF=1;AN=2;DP=2269;FS=0;MQ=60;MQRankSum=0.075;ReadPosRankSum=-0.377;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1245,120,0:0,0,21,19
chr1	151271782	.	A	C	228.19	PASS	AC=2;AF=0.75;AN=2;DP=856;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:41:436,41,0:0,0,3,11
chr1	151274973	.	T	A	756.7	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=4.077;FractionInformativeReads=1;MQ=60;MQRankSum=1.389;QD=13.76;ReadPosRankSum=2.416;SOR=1.341;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,28:55:99:785,0,688:10,17,7,21
chr1	151278505	.	A	G	978.54	PASS	AC=2;AF=0.852;AN=2;DP=3195;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2187,195,0:0,0,38,27
chr1	151280400	.	C	G	283.32	PASS	AC=2;AF=0.852;AN=2;DP=1565;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1398,129,0:0,0,19,24
chr1	151282770	.	T	G	32.4	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=44;FS=39.254;FractionInformativeReads=0.932;MQ=60;MQRankSum=1.958;QD=0.74;ReadPosRankSum=-2.99;SOR=3.222;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:31,10:41:61:61,0,640:25,6,1,9
chr1	151283019	.	T	C	299.37	PASS	AC=2;AF=0.776;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:538,39,0:0,0,2,11
chr1	151288172	.	G	A	1500.51	PASS	AC=1;AF=0.707;AN=2;DP=5081;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,75:135:99:2309,0,1678:30,30,43,32
chr1	151288391	.	A	G	5169.08	PASS	AC=2;AF=1;AN=2;DP=9250;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:6448,611,0:0,0,97,107
chr1	151299692	.	A	AC,ACCCCC,ACC	52.41	PASS	AC=0,0,1;AF=0.5,0.05,0.05;AN=2;DP=120;MQ=60;set=variant8-variant15-variant16-variant21-variant22-variant25-variant30-variant35-variant37-variant41	GT:DP:GQ:SB	0/3:7:16:0,1,5,1
chr1	151313578	.	T	G	667.04	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=1.4;FractionInformativeReads=1;MQ=60;MQRankSum=0.016;QD=18.03;ReadPosRankSum=-0.673;SOR=0.382;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,23:37:99:695,0,352:4,10,9,14
chr1	151313774	.	A	G	146.4	PASS	AC=2;AF=0.732;AN=2;DP=1539;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1426,135,0:0,0,24,21
chr1	151314379	.	T	C	1289.24	PASS	AC=2;AF=0.852;AN=2;DP=4819;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3870,342,0:0,0,55,59
chr1	151316006	.	T	C	1551.31	PASS	AC=1;AF=0.5;AN=2;DP=105;FS=0.738;FractionInformativeReads=1;MQ=60;MQRankSum=-1.266;QD=14.77;ReadPosRankSum=1.428;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,60:105:99:1580,0,1035:19,26,27,33
chr1	151316161	.	G	A	770.43	PASS	AC=2;AF=1;AN=2;DP=1712;FS=0;MQ=60;MQRankSum=1.209;ReadPosRankSum=1.209;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1663,144,0:0,0,26,22
chr1	151337788	.	A	G	354.27	PASS	AC=1;AF=0.683;AN=2;DP=1784;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:469,0,706:11,15,9,9
chr1	151340787	.	C	T	1358.91	PASS	AC=1;AF=0.5;AN=2;DP=126;FS=1.418;FractionInformativeReads=1;MQ=60;MQRankSum=1.16;QD=10.78;ReadPosRankSum=-1.018;SOR=0.656;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,60:126:99:1387,0,1643:35,31,29,31
chr1	151341728	.	G	GC	171.47	PASS	AC=1;AF=0.677;AN=2;DP=450;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:135,0,174:1,5,1,4
chr1	151372770	.	A	G	1489.83	PASS	AC=2;AF=1;AN=2;DP=2478;FS=0;MQRankSum=0;ReadPosRankSum=1.496;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1962,162,0:0,0,21,33
chr1	151373200	.	T	C	4617.25	PASS	AC=2;AF=1;AN=2;DP=4879;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3648,332,0:0,0,55,56
chr1	151374025	.	T	C	684.62	PASS	AC=1;AF=0.5;AN=2;DP=1088;MQ=60;set=variant4-variant5-variant8-variant12-variant14-variant16-variant18-variant26-variant28-variant31-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,40:84:99:960,0,1165:21,23,21,19
chr1	151374545	.	C	T	723.83	PASS	AC=1;AF=0.86;AN=2;DP=707;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:175,0,427:4,11,2,6
chr1	151375584	.	T	C	614.5	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=0;FractionInformativeReads=1;MQ=60;set=variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,29:43:99:730,0,279:6,8,14,15
chr1	151377248	.	T	C	2271.92	PASS	AC=2;AF=1;AN=2;DP=1801;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1005,78,0:0,0,14,12
chr1	151377407	.	A	C	2214.83	PASS	AC=1;AF=0.5;AN=2;DP=647;MQ=60;set=variant2-variant10-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:89,80:169:99:1948,0,2108:45,44,39,41
chr1	151379699	.	G	GT	641.8	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.431;QD=9.87;ReadPosRankSum=-1.557;SOR=0.66;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,28:65:99:679,0,948:24,13,18,10
chr1	151384052	.	T	TA	37.56	PASS	AC=1;AF=0.5;AN=2;DP=120;MQ=60;set=filterInvariant-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,25:51:99:462,0,486:18,8,13,12
chr1	151384258	.	T	TAGG	1021.69	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=2.285;FractionInformativeReads=0.91;MQ=60;MQRankSum=3.249;QD=15.25;ReadPosRankSum=-2.337;SOR=1.065;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:1059,0,1503:12,21,8,20
chr1	151384711	.	A	G	2097.57	PASS	AC=1;AF=0.864;AN=2;DP=2486;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,29:83:99:605,0,1398:34,20,17,12
chr1	151384733	.	G	A	2435.69	PASS	AC=1;AF=0.864;AN=2;DP=3233;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:66,34:100:99:685,0,1607:39,27,19,15
chr1	151395755	.	A	G	402.6	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=3.096;FractionInformativeReads=0.947;MQ=60;MQRankSum=1.084;QD=21.19;ReadPosRankSum=1.084;SOR=2.049;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:99:431,0,124:4,1,12,1
chr1	151402045	.	A	G	2033.1	PASS	AC=1;AF=0.864;AN=2;DP=2843;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:42,29:71:99:704,0,1029:26,16,20,9
chr1	151431632	.	T	C	61.77	PASS	AC=2;AF=0.978;AN=2;DP=111;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.026;ReadPosRankSum=0;set=variant3-variant4-variant6-variant7-variant11-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr1	151483854	.	A	G	983.26	PASS	AC=2;AF=1;AN=2;DP=1324;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1293,90,0:0,0,27,3
chr1	151483892	.	G	A	1676.79	PASS	AC=2;AF=1;AN=2;DP=2190;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1962,141,0:0,0,39,8
chr1	151483911	.	T	TGCCCGA,TGCCCGAGCCCGA	2255.88	PASS	AC=1,1;AF=0.909,0.057;AN=2;DP=2750;set=Intersection	GT:DP:GQ:SB	1/2:41:99:0,0,29,12
chr1	151495796	.	T	C	3693.27	PASS	AC=2;AF=0.583;AN=2;DP=1130;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant20-variant23-variant26-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2166,213,0:0,0,42,29
chr1	151497140	.	T	C	4481.03	PASS	AC=2;AF=0.583;AN=2;DP=1510;MQ=60;set=variant4-variant12-variant20-variant23-variant26-variant31-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:3852,387,0:0,0,71,58
chr1	151497376	.	G	A	802.54	PASS	AC=2;AF=0.591;AN=2;DP=187;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant20-variant23-variant26-variant31-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:742,60,0:0,0,4,16
chr1	151498330	.	A	G	768.13	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=1.388;FractionInformativeReads=1;MQ=60;MQRankSum=0.763;QD=15.06;ReadPosRankSum=1.988;SOR=1.148;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,25:51:99:796,0,737:6,20,4,21
chr1	151501698	.	A	G	2688.1	PASS	AC=2;AF=0.966;AN=2;DP=2857;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2379,240,0:0,0,46,34
chr1	151501737	.	T	C	3392.08	PASS	AC=2;AF=0.966;AN=2;DP=3816;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2950,297,0:0,0,56,43
chr1	151504778	.	C	T	273.12	PASS	AC=2;AF=0.633;AN=2;DP=1043;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:891,87,0:0,0,19,10
chr1	151505088	.	CTTT	CTT,C,CTTTT,CT	55.39	PASS	AC=2,0,0,0;AF=0.308,0.077,0.038,0.154;AN=2;DP=230;MQ=60;set=variant2-variant3-variant9-variant10-variant18-variant19-variant29-variant31-variant36-variant37-variant38-variant40-variant41	GT:DP:GQ:SB	1/1:8:2:0,1,0,7
chr1	151509966	.	T	TA	494.89	PASS	AC=2;AF=0.909;AN=2;DP=1833;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,36:38:60:870,60,0:1,1,18,18
chr1	151510026	.	A	G	993.56	PASS	AC=2;AF=0.932;AN=2;DP=2054;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1578,150,0:0,0,28,22
chr1	151510825	.	C	T	854.36	PASS	AC=1;AF=0.5;AN=2;DP=728;MQ=60;set=variant4-variant7-variant15-variant20-variant21-variant25-variant28-variant31-variant34-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:676,0,688:15,14,14,13
chr1	151534142	.	A	C	381.99	PASS	AC=1;AF=0.617;AN=2;DP=2196;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:651,0,786:19,9,15,11
chr1	151535020	.	ATC	ATCTC,A	192.71	PASS	AC=1,0;AF=0.543,0.022;AN=2;DP=337;set=variant-variant5-variant6-variant9-variant11-variant13-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant37-variant38-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:15:99:4,1,8,2
chr1	151538412	.	G	A	245.17	PASS	AC=1;AF=0.571;AN=2;DP=80;MQ=60;set=variant7-variant18-variant21-variant23-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:156,0,192:4,1,4,2
chr1	151538507	.	T	TC	216.58	PASS	AC=1;AF=0.977;AN=2;DP=548;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:151,0,184:2,5,0,6
chr1	151541940	.	G	A	636.14	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=1.02;FractionInformativeReads=1;MQ=60;MQRankSum=-0.584;QD=10.78;ReadPosRankSum=-1.647;SOR=0.557;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:664,0,838:21,10,18,10
chr1	151542099	.	G	T	4470.42	PASS	AC=2;AF=0.795;AN=2;DP=5876;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5390,506,0:0,0,95,74
chr1	151546931	.	A	G	545.3	PASS	AC=2;AF=0.932;AN=2;DP=945;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:776,54,0:0,0,0,18
chr1	151551078	.	A	G	69.72	PASS	AC=2;AF=0.866;AN=2;DP=324;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:375,36,0:0,0,8,4
chr1	151551320	.	G	A	2448.68	PASS	AC=1;AF=0.78;AN=2;DP=4435;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,56:100:99:1413,0,1145:25,19,30,26
chr1	151552301	.	TG	T	482.2	PASS	AC=1;AF=0.788;AN=2;DP=519;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:247,0,166:0,5,1,6
chr1	151553252	.	A	G	157.86	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=3.09;FractionInformativeReads=1;MQ=60;MQRankSum=-0.278;QD=14.35;ReadPosRankSum=0.278;SOR=0.148;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:186,0,141:4,0,5,2
chr1	151553918	.	C	T	151.77	PASS	AC=1;AF=0.78;AN=2;DP=451;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:230,0,174:5,0,5,2
chr1	151554503	.	T	C	4904.63	PASS	AC=1;AF=0.78;AN=2;DP=6279;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,88:164:99:2225,0,1823:46,30,55,33
chr1	151555160	.	C	T	1329.45	PASS	AC=1;AF=0.5;AN=2;DP=123;FS=2.397;FractionInformativeReads=1;MQ=60;MQRankSum=-1.193;QD=10.81;ReadPosRankSum=1.121;SOR=0.481;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,53:123:99:1358,0,1876:25,45,22,31
chr1	151555701	.	C	T	325.66	PASS	AC=1;AF=0.811;AN=2;DP=466;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:90:90,0,240:4,2,3,0
chr1	151555741	.	A	G	186.72	PASS	AC=2;AF=0.852;AN=2;DP=826;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:517,42,0:0,0,9,5
chr1	151634512	.	A	AT	348.48	PASS	AC=1;AF=0.744;AN=2;DP=1299;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:369,0,335:12,2,11,4
chr1	151634803	.	G	A	445.65	PASS	AC=1;AF=0.667;AN=2;DP=1266;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:413,0,559:2,14,4,11
chr1	151655751	.	C	T	729.41	PASS	AC=1;AF=0.5;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant11-variant20-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:384,0,624:17,8,11,2
chr1	151664882	.	CTT	CTTT,CTTTT,C,CT,CTTTTT	183.1	PASS	AC=1,0,0,0,0;AF=0.235,0.206,0.044,0.044,0.044;AN=2;DP=1670;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant14-filterInvariant15-filterInvariant16-variant17-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant39-variant40-filterInvariant41-variant43-variant44	GT:DP:GQ:SB	0/1:29:97:6,9,9,5
chr1	151668295	.	A	C	1136.56	PASS	AC=1;AF=0.6;AN=2;DP=2224;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant31-variant33-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:889,0,1193:26,14,20,15
chr1	151668974	.	T	G	50.43	PASS	AC=2;AF=0.75;AN=2;DP=10;FS=0;MQ=60;MQRankSum=1.026;ReadPosRankSum=1.026;SOR=2.303;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:85,6,0:0,0,0,2
chr1	151669442	.	C	T	307.18	PASS	AC=1;AF=0.6;AN=2;DP=1020;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant31-variant33-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:517,0,736:19,6,15,8
chr1	151669555	.	C	A	1414.78	PASS	AC=1;AF=0.58;AN=2;DP=3037;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant31-variant33-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,68:123:99:1789,0,1584:37,18,42,26
chr1	151669997	.	C	A	1188.99	PASS	AC=1;AF=0.596;AN=2;DP=2564;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,36:98:99:834,0,1554:30,32,19,17
chr1	151675414	.	A	G	2209.85	PASS	AC=2;AF=1;AN=2;DP=2908;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2333,219,0:0,0,33,40
chr1	151675618	.	T	C	1128.54	PASS	AC=2;AF=1;AN=2;DP=2711;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2033,186,0:0,0,33,29
chr1	151679441	.	T	C	887.26	PASS	AC=1;AF=0.593;AN=2;DP=1332;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,23:33:99:675,0,239:6,4,14,9
chr1	151679900	.	C	T	1158.9	PASS	AC=1;AF=0.593;AN=2;DP=3179;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,55:108:99:1471,0,1497:35,18,30,25
chr1	151682503	.	G	A	76.73	PASS	AC=1;AF=0.5;AN=2;DP=83;MQ=60;set=variant-variant8-variant11-variant20-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:184,0,105:1,3,3,5
chr1	151683100	.	T	C	746.91	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.502;QD=9.45;ReadPosRankSum=-1.407;SOR=0.73;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,33:79:99:775,0,1127:26,20,19,14
chr1	151686081	.	C	T	115.39	PASS	AC=1;AF=0.662;AN=2;DP=488;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:128,0,230:4,4,2,3
chr1	151686983	.	T	A	1491.26	PASS	AC=1;AF=0.621;AN=2;DP=5636;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,98:196:99:2461,0,2395:50,48,51,47
chr1	151700189	.	C	CCTG	639.95	PASS	AC=2;AF=0.92;AN=2;DP=1593;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:2016,135,0:0,0,15,30
chr1	151701210	.	A	G	1168	PASS	AC=1;AF=0.5;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant8-variant20-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,42:76:99:1105,0,933:18,16,24,18
chr1	151732700	.	A	G	1060.11	PASS	AC=1;AF=0.571;AN=2;DP=2796;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,42:80:99:1044,0,963:13,25,19,23
chr1	151733162	.	G	A	281.29	PASS	AC=1;AF=0.5;AN=2;DP=86;FractionInformativeReads=1;MQ=60;set=variant8-variant20-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:169,0,302:8,3,6,2
chr1	151733327	.	T	C	1403.57	PASS	AC=1;AF=0.5;AN=2;DP=354;FractionInformativeReads=1;MQ=60;set=variant8-variant20-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,33:87:99:1224,0,2082:32,22,16,17
chr1	151733335	.	T	G	535.63	PASS	AC=1;AF=0.571;AN=2;DP=3351;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,33:85:99:1227,0,2060:30,22,16,17
chr1	151733379	.	CAAA	CAAAAAAA,CAAAAA,CA,CAAAA,C,CAAAAAA,CAA,CAAAAAAAAAAAAAAAAAA	927.24	PASS	AC=0,0,0,0,0,0,1,0;AF=0.017,0.138,0.052,0.086,0.052,0.069,0.138,0.017;AN=2;DP=1735;set=variant3-variant4-variant5-filterInvariant6-filterInvariant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant22-variant23-variant24-filterInvariant25-variant26-variant27-variant31-variant32-filterInvariant35-variant36-filterInvariant37-variant38-filterInvariant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/7:15:56:1,4,4,6
chr1	151733874	.	C	G	1342.43	PASS	AC=1;AF=0.5;AN=2;DP=507;FractionInformativeReads=1;MQ=60;set=variant8-variant20-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,52:124:99:1152,0,1976:39,33,28,24
chr1	151734690	.	G	C	370.49	PASS	AC=1;AF=0.5;AN=2;DP=149;FractionInformativeReads=1;MQ=60;set=variant8-variant20-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:656,0,535:10,12,10,13
chr1	151735007	.	G	A	821.76	PASS	AC=1;AF=0.5;AN=2;DP=264;MQ=60;set=variant8-variant20-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,16:66:99:345,0,1204:21,29,5,11
chr1	151735441	.	G	A	1836.58	PASS	AC=1;AF=0.5;AN=2;DP=487;FractionInformativeReads=1;MQ=60;set=variant8-variant20-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,62:108:99:1746,0,1183:24,22,35,27
chr1	151736268	.	CTG	C	940.29	PASS	AC=1;AF=0.574;AN=2;DP=1566;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,28:65:99:1054,0,1640:16,21,10,18
chr1	151736876	.	C	T	7966.75	PASS	AC=1;AF=0.671;AN=2;DP=7727;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,102:223:99:2401,0,3164:50,71,49,53
chr1	151737349	.	T	A	564.76	PASS	AC=2;AF=0.886;AN=2;DP=2038;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1609,138,0:0,0,32,14
chr1	151738184	.	ATT	A,AT	1978.82	PASS	AC=0,2;AF=0.125,0.852;AN=2;DP=4873;MQ=60;set=Intersection	GT:DP:GQ:SB	2/2:88:99:2,1,18,67
chr1	151740420	.	G	A	678.96	PASS	AC=2;AF=0.617;AN=2;DP=1151;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1083,105,0:0,0,23,12
chr1	151740479	.	C	A	2247.15	PASS	AC=2;AF=1;AN=2;DP=2423;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1951,176,0:0,0,37,22
chr1	151740666	.	T	C	4591.75	PASS	AC=2;AF=1;AN=2;DP=6604;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4871,470,0:0,0,79,78
chr1	151742798	.	T	C	618.21	PASS	AC=2;AF=0.617;AN=2;DP=1188;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1504,123,0:0,0,9,32
chr1	151746074	.	A	T	2524	PASS	AC=1;AF=0.5;AN=2;DP=256;FS=2.855;FractionInformativeReads=1;MQ=60;MQRankSum=2.63;QD=9.86;ReadPosRankSum=2.366;SOR=0.516;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:148,108:256:99:2552,0,3847:56,92,46,62
chr1	151747970	.	A	G	774.93	PASS	AC=2;AF=0.604;AN=2;DP=2224;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant22-variant24-variant26-variant29-variant31-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2638,249,0:0,0,31,52
chr1	151763246	.	G	A	119.26	PASS	AC=2;AF=0.905;AN=2;DP=486;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:531,48,0:0,0,11,5
chr1	151763815	.	C	T	140.78	PASS	AC=2;AF=0.895;AN=2;DP=1434;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:87:978,87,0:0,0,20,10
chr1	151773152	.	A	G	1467.68	PASS	AC=2;AF=1;AN=2;DP=2473;FS=0;MQ=60;MQRankSum=0.037;ReadPosRankSum=1.585;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2148,204,0:0,0,36,32
chr1	151773167	.	G	A	609.02	PASS	AC=2;AF=0.617;AN=2;DP=1871;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2311,228,0:0,0,39,37
chr1	151777651	.	G	A	636.2	PASS	AC=1;AF=0.583;AN=2;DP=2756;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,38:99:99:746,0,1471:37,24,21,17
chr1	151778899	.	T	C	482.05	PASS	AC=2;AF=0.6;AN=2;DP=2566;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2925,288,0:0,0,42,54
chr1	151783688	.	A	C	634.6	PASS	AC=1;AF=0.65;AN=2;DP=1091;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:575,0,274:8,2,11,5
chr1	151783736	.	G	A	392.27	PASS	AC=1;AF=0.5;AN=2;DP=299;MQ=60;set=variant-variant16-variant19-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,38:69:99:1016,0,806:20,11,21,17
chr1	151783805	.	G	C	1250.05	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=1.485;FractionInformativeReads=1;MQ=60;MQRankSum=0.081;QD=10.87;ReadPosRankSum=-0.697;SOR=0.551;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,55:115:99:1278,0,1451:34,26,29,26
chr1	151785229	.	T	C	33.94	PASS	AC=1;AF=0.5;AN=2;DP=56;FractionInformativeReads=1;MQ=60;set=variant-variant16-variant19-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:67:152,0,67:3,1,5,0
chr1	151789588	.	C	CTGTGTG,CTGTGTGTG,CTG,CTGTGTGTGTG,CTGTG	1526.57	PASS	AC=1,1,0,0,0;AF=0.318,0.602,0.023,0.034,0.011;AN=2;DP=1535;set=Intersection	GT:DP:GQ:SB	1/2:21:99:0,0,19,2
chr1	151789609	.	C	T	1378.64	PASS	AC=2;AF=0.989;AN=2;DP=2400;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:85:1269,85,0:0,0,20,9
chr1	151789611	.	C	T	408.38	PASS	AC=2;AF=0.909;AN=2;DP=2396;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:85:1268,85,0:0,0,20,9
chr1	151789647	.	T	G	1354.99	PASS	AC=1;AF=0.694;AN=2;DP=3625;set=variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,60:110:99:1284,0,1369:35,15,34,26
chr1	151801680	.	G	A	214.42	PASS	AC=1;AF=0.583;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant11-variant23-variant26-variant30-variant32-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:421,0,250:5,3,8,7
chr1	151803449	.	G	T	452.03	PASS	AC=1;AF=0.604;AN=2;DP=1380;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant18-variant19-variant21-variant24-variant26-variant27-variant31-variant33-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,31:48:99:826,0,369:10,7,18,13
chr1	151803764	.	G	C	250.39	PASS	AC=2;AF=0.943;AN=2;DP=692;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:623,51,0:0,0,4,13
chr1	151810304	.	G	C	196.82	PASS	AC=1;AF=0.729;AN=2;DP=1120;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant17-variant18-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:388,0,648:16,8,9,5
chr1	151810486	.	G	A	2266.97	PASS	AC=1;AF=0.5;AN=2;DP=202;FS=1.755;FractionInformativeReads=0.995;MQ=60;MQRankSum=-1.399;QD=11.22;ReadPosRankSum=3.052;SOR=0.832;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:104,97:201:99:2295,0,2581:61,43,60,37
chr1	151811226	.	G	A	1821.37	PASS	AC=1;AF=0.989;AN=2;DP=2314;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:37,22:59:99:493,0,1031:18,19,11,11
chr1	151811569	.	A	C	955.71	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=1.803;FractionInformativeReads=1;MQ=60;MQRankSum=-0.116;QD=11.38;ReadPosRankSum=-2.183;SOR=0.925;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,41:84:99:984,0,1075:18,25,15,26
chr1	151812578	.	A	C	510.1	PASS	AC=2;AF=1;AN=2;DP=676;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:953,78,0:0,0,21,5
chr1	151813044	.	T	C	291.35	PASS	AC=2;AF=1;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;QD=26.49;SOR=1.27;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:320,33,0:0,0,4,7
chr1	151819031	.	T	G	2382.08	PASS	AC=2;AF=1;AN=2;DP=3746;FS=0;MQ=60;MQRankSum=1.254;ReadPosRankSum=-0.378;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2731,273,0:0,0,48,43
chr1	151819691	.	AGGAGGCAGGAGGCAGGCAGGGGAGGCAGGAGGCAGGAGGCAGGCAGG	A	710.26	PASS	AC=2;AF=0.966;AN=2;DP=4764;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:99:1401,142,0:0,0,10,19
chr1	151820298	.	G	C	4739.7	PASS	AC=2;AF=1;AN=2;DP=7779;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:6051,616,0:0,0,104,102
chr1	151820324	.	T	C	4726.58	PASS	AC=2;AF=0.854;AN=2;DP=7153;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,197:197:99:5878,589,0:0,0,98,99
chr1	151825713	.	G	C	30.23	PASS	AC=2;AF=0.736;AN=2;DP=676;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:595,51,0:0,0,13,4
chr1	151825991	.	G	T	246.29	PASS	AC=2;AF=0.797;AN=2;DP=2932;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2504,259,0:0,0,44,43
chr1	151846059	.	C	T	246.9	PASS	AC=1;AF=0.94;AN=2;DP=249;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,158:4,1,2,0
chr1	151846517	.	C	T	538.5	PASS	AC=1;AF=0.717;AN=2;DP=408;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,9:11:59:256,0,59:0,2,3,6
chr1	151849668	.	T	C	1049.32	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.65;QD=14.18;ReadPosRankSum=-0.089;SOR=0.668;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,45:74:99:1078,0,639:12,17,19,26
chr1	151860801	.	T	C	563.39	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=1.768;FractionInformativeReads=1;MQ=60;MQRankSum=0.753;QD=18.78;ReadPosRankSum=-1.967;SOR=1.508;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:592,0,379:9,4,14,3
chr1	151861477	.	A	G	93.57	PASS	AC=2;AF=1;AN=2;DP=43;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant9-variant14-variant20-variant23-variant25-variant26-variant27-variant28-variant32-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:87,6,0:0,0,2,0
chr1	151862661	.	G	A	1781.53	PASS	AC=1;AF=0.712;AN=2;DP=2237;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,39:67:99:986,0,684:17,11,23,16
chr1	151867560	.	G	A	665.01	PASS	AC=1;AF=0.898;AN=2;DP=2346;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:20,23:43:99:754,0,685:11,9,10,13
chr1	151881885	.	A	C	621.79	PASS	AC=1;AF=0.898;AN=2;DP=3030;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:813,0,666:12,12,16,15
chr1	151964935	.	C	G	655.91	PASS	AC=1;AF=0.529;AN=2;DP=553;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant14-variant15-variant16-variant17-variant21-variant23-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:594,0,422:12,7,16,7
chr1	151966348	.	C	T	1708.48	PASS	AC=1;AF=0.712;AN=2;DP=2017;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:812,0,595:12,14,16,15
chr1	152005327	.	TA	T	1580.63	PASS	AC=1;AF=0.543;AN=2;DP=2371;MQ=60;set=variant2-variant7-variant11-variant13-variant15-variant16-variant17-variant21-variant23-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,51:109:99:1677,0,1957:25,33,22,29
chr1	152005482	.	C	G	454.35	PASS	AC=1;AF=0.552;AN=2;DP=378;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant10-variant11-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:142,0,281:1,8,1,4
chr1	152009530	.	T	C	1324.19	PASS	AC=2;AF=0.898;AN=2;DP=4135;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2820,276,0:0,0,34,58
chr1	152060796	.	A	T	415.47	PASS	AC=2;AF=1;AN=2;DP=718;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:602,54,0:0,0,4,14
chr1	152083325	.	A	T	2730	PASS	AC=1;AF=0.5;AN=2;DP=2796;MQ=60;set=variant2-variant11-variant15-variant16-variant17-variant21-variant23-variant28-variant29-variant30-variant32-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,65:139:99:1557,0,1999:39,35,40,25
chr1	152085505	.	A	C	4664.24	PASS	AC=2;AF=1;AN=2;DP=5541;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:4019,366,0:0,0,53,69
chr1	152184487	.	T	G	2354.45	PASS	AC=2;AF=0.989;AN=2;DP=1804;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1609,120,0:0,0,37,3
chr1	152184534	.	C	G	4572.31	PASS	AC=1;AF=0.779;AN=2;DP=4395;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,39:95:99:1236,0,1651:43,13,33,6
chr1	152184704	.	C	T	17302.2	PASS	AC=1;AF=0.779;AN=2;DP=20707;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:218,205:423:99:4922,0,5491:114,104,102,103
chr1	152184950	.	T	G	11110.9	PASS	AC=1;AF=0.779;AN=2;DP=15103;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,204:364:99:4918,0,4066:76,84,95,109
chr1	152185095	.	T	A	5658.15	PASS	AC=1;AF=0.779;AN=2;DP=6282;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,80:160:99:2375,0,2232:32,48,39,41
chr1	152185184	.	C	T	7437.06	PASS	AC=1;AF=0.779;AN=2;DP=9548;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,119:229:99:3051,0,3162:68,42,68,51
chr1	152185500	.	C	G	3490.54	PASS	AC=1;AF=0.5;AN=2;DP=4377;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,104:228:99:2854,0,3605:51,73,41,63
chr1	152185750	.	G	A	6016.15	PASS	AC=1;AF=0.525;AN=2;DP=5374;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,159:221:99:4666,0,1996:26,36,81,78
chr1	152185762	.	C	G	3981.12	PASS	AC=1;AF=0.763;AN=2;DP=7158;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:160,53:213:99:1670,0,6761:81,79,19,34
chr1	152185768	.	T	G	3760.3	PASS	AC=1;AF=0.757;AN=2;DP=6816;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:161,49:210:99:1592,0,6686:81,80,17,32
chr1	152185774	.	A	G	3289.18	PASS	AC=1;AF=0.75;AN=2;DP=6232;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:165,45:210:99:1419,0,6950:84,81,16,29
chr1	152185780	.	G	A	3105.31	PASS	AC=1;AF=0.75;AN=2;DP=5955;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:172,38:210:99:1216,0,7516:86,86,12,26
chr1	152185790	.	T	C	2311.77	PASS	AC=1;AF=0.727;AN=2;DP=5272;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:177,21:198:99:658,0,7723:95,82,6,15
chr1	152185792	.	G	A	1996.77	PASS	AC=1;AF=0.727;AN=2;DP=5071;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:179,18:197:99:325,0,7705:94,85,4,14
chr1	152185796	.	A	G	1771.77	PASS	AC=1;AF=0.727;AN=2;DP=4804;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant16-filterInvariant18-variant19-variant22-variant25-variant27-variant28-filterInvariant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:176,17:193:99:175,0,7465:90,86,4,13
chr1	152186141	.	C	T	496.69	DRAGENHardSNP	AC=1;AF=0.84;AN=2;DP=1599;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:62,29:91:99:486,0,1319:35,27,7,22
chr1	152186699	.	T	A	309.08	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=14229;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:510,156:666:99:2086,0,11349:308,202,102,54
chr1	152186766	.	G	A	921.84	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=20029;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:600,338:938:99:5461,0,12644:274,326,170,168
chr1	152187183	.	C	A	666.01	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=12510;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:427,178:605:99:3263,0,10350:84,343,32,146
chr1	152187554	.	C	T	303.13	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=5685;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:172,78:250:99:1284,0,3805:99,73,51,27
chr1	152187562	.	A	C	1782.51	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=6216;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:6745,620,0:0,0,124,80
chr1	152187588	.	C	T	184.98	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=8671;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:468,79:547:99:354,0,13744:274,194,50,29
chr1	152187589	.	G	A	1599.11	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=6295;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:500,78:578:99:310,0,14466:299,201,43,35
chr1	152187606	.	G	A	1488.61	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2604;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:732,109:841:99:273,0,19777:407,325,59,50
chr1	152187935	.	C	T	1703.23	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=7765;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:145,135:280:99:5373,0,5918:79,66,106,29
chr1	152187945	.	C	T	1980.14	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=9686;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:159,189:348:99:6404,0,6069:87,72,133,56
chr1	152188062	.	T	C	1610.47	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2494;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:619,98:717:99:331,0,13497:289,330,44,54
chr1	152188109	.	T	A	1592.2	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=22758;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:420,373:793:99:7364,0,10354:295,125,143,230
chr1	152188176	.	G	A	1760.68	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=30834;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:1001,149:1150:99:675,0,22850:611,390,82,67
chr1	152188463	.	G	A	2538.03	PASS	AC=1;AF=0.5;AN=2;DP=53267;set=variant-filterInvariant4-variant6-variant7-filterInvariant8-variant10-variant11-variant13-variant15-filterInvariant16-variant20-variant21-variant23-variant24-variant25-filterInvariant26-filterInvariant28-variant29-filterInvariant30-variant32-variant33-filterInvariant35-variant36-filterInvariant38-filterInvariant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1705,557:2262:99:8406,0,39452:755,950,240,317
chr1	152188920	.	C	T	462.01	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=7432;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:197,45:242:99:461,0,4369:83,114,18,27
chr1	152188998	.	C	T	319.16	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4857;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:93,41:134:99:724,0,2173:20,73,9,32
chr1	152190720	.	C	T	166.79	PASS	AC=1;AF=0.789;AN=2;DP=329;FS=0;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-variant6-filterInvariant7-filterInvariant8-variant10-filterInvariant11-filterInvariant12-variant13-filterInvariant15-filterInvariant16-filterInvariant18-variant19-filterInvariant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-variant31-filterInvariant32-variant33-filterInvariant35-filterInvariant36-filterInvariant38-variant39-filterInvariant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:149,0,293:10,0,6,0
chr1	152190835	.	G	A	3937.71	PASS	AC=1;AF=0.5;AN=2;DP=4280;set=variant3-variant5-variant8-variant9-variant10-variant13-variant14-variant16-filterInvariant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:141,136:277:99:3059,0,3219:92,49,89,47
chr1	152190945	.	C	T	5852	PASS	AC=1;AF=0.5;AN=2;DP=6065;set=variant3-variant5-variant8-variant9-variant10-variant13-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:164,198:362:99:4692,0,3933:83,81,99,99
chr1	152191502	.	C	G	3420.77	PASS	AC=1;AF=0.5;AN=2;DP=263;FS=0.452;FractionInformativeReads=1;MQ=60;MQRankSum=1.681;QD=13.01;ReadPosRankSum=-1.267;SOR=0.746;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:133,130:263:99:3449,0,3760:59,74,56,74
chr1	152191709	.	C	G	6813.51	PASS	AC=1;AF=0.786;AN=2;DP=16282;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:166,177:343:99:4488,0,4119:85,81,95,82
chr1	152191879	.	G	A	6919.62	PASS	AC=1;AF=0.779;AN=2;DP=19019;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:194,210:404:99:5509,0,5011:98,96,106,104
chr1	152192097	.	C	CGG	235.1	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=2360;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:357,30:387:99:240,0,14965:169,188,30,0
chr1	152192100	.	A	C	67.19	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4812;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:363,40:403:99:438,0,15368:172,191,38,2
chr1	152192101	.	ATC	A	49.14	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=3745;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:371,45:416:99:411,0,15642:178,193,41,4
chr1	152192114	.	C	T	4760.26	PASS	AC=1;AF=0.581;AN=2;DP=17057;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:298,158:456:99:3987,0,8793:165,133,70,88
chr1	152192163	.	G	T	104.55	PASS	AC=1;AF=0.5;AN=2;DP=13218;set=filterInvariant-variant6-filterInvariant7-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant15-filterInvariant16-variant19-variant20-variant21-variant23-variant24-variant25-filterInvariant26-variant28-variant29-filterInvariant30-filterInvariant32-filterInvariant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:296,188:484:99:3250,0,8084:144,152,90,98
chr1	152192219	.	G	C	44.07	PASS	AC=1;AF=0.5;AN=2;DP=13257;set=filterInvariant-variant6-filterInvariant7-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant15-filterInvariant16-variant19-variant20-variant21-variant23-variant24-variant25-filterInvariant26-variant28-variant29-filterInvariant30-filterInvariant32-filterInvariant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:281,186:467:99:3352,0,7704:140,141,88,98
chr1	152192259	.	T	C	516.65	PASS	AC=1;AF=0.5;AN=2;DP=7604;set=filterInvariant6-filterInvariant10-filterInvariant12-filterInvariant13-variant15-filterInvariant19-filterInvariant20-variant21-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant29-filterInvariant35-filterInvariant36-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:299,56:355:99:1010,0,8334:150,149,3,53
chr1	152192293	.	C	T	6323.97	PASS	AC=1;AF=0.779;AN=2;DP=15241;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,166:306:99:4337,0,3673:69,71,80,86
chr1	152192555	.	T	C	6549.29	PASS	AC=1;AF=0.5;AN=2;DP=6830;set=variant3-variant5-variant8-variant9-variant10-variant13-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:209,216:425:99:5797,0,5110:104,105,106,110
chr1	152192631	.	C	T	7465.84	PASS	AC=1;AF=0.779;AN=2;DP=19684;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:216,203:419:99:4723,0,5617:108,108,95,108
chr1	152192687	.	T	C	6293.09	PASS	AC=2;AF=0.989;AN=2;DP=17135;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,379:379:99:11581,1133,0:0,0,169,210
chr1	152192825	.	C	T	1897.27	PASS	AC=1;AF=0.609;AN=2;DP=7192;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,121:237:99:2964,0,3379:52,64,61,60
chr1	152192978	.	T	C	6164.6	PASS	AC=2;AF=0.989;AN=2;DP=17094;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,341:341:99:10938,1022,0:0,0,179,162
chr1	152193052	.	A	G	7120.94	PASS	AC=2;AF=0.989;AN=2;DP=18428;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,388:389:99:12543,1123,0:1,0,208,180
chr1	152193121	.	G	T	8362.16	PASS	AC=1;AF=0.779;AN=2;DP=20036;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:271,187:458:99:4740,0,6888:149,122,95,92
chr1	152193286	.	G	T	3020.87	PASS	AC=1;AF=0.609;AN=2;DP=17593;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:290,250:540:99:9387,0,16250:142,148,129,121
chr1	152193291	.	G	T	9286.85	PASS	AC=1;AF=0.779;AN=2;DP=24408;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:287,246:533:99:9340,0,16288:143,144,128,118
chr1	152193544	.	A	G	4795.25	PASS	AC=1;AF=0.786;AN=2;DP=7906;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,90:181:99:2534,0,2304:37,54,35,55
chr1	152193547	.	G	A	4819.95	PASS	AC=2;AF=0.989;AN=2;DP=8076;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:6725,539,0:0,0,70,109
chr1	152193851	.	C	T	3908.52	PASS	AC=1;AF=0.786;AN=2;DP=5087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,50:120:99:1145,0,1783:34,36,26,24
chr1	152193990	.	A	G	1179.44	PASS	AC=1;AF=0.786;AN=2;DP=1245;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:413,0,419:3,12,5,12
chr1	152195579	.	G	A	2005.74	PASS	AC=1;AF=0.5;AN=2;DP=2836;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,70:156:99:1941,0,2526:56,30,49,21
chr1	152195728	.	AT	A	6864.44	PASS	AC=2;AF=0.989;AN=2;DP=12115;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,270:271:99:7284,782,0:0,1,112,158
chr1	152195851	.	TAGTC	T	2241.7	PASS	AC=1;AF=0.779;AN=2;DP=2878;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,21:50:99:760,0,1631:7,22,2,19
chr1	152196717	.	C	A	156.22	PASS	AC=2;AF=0.989;AN=2;DP=602;FractionInformativeReads=1;MQ=60;MQRankSum=-1.936;ReadPosRankSum=0.421;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:387,39,0:0,0,4,9
chr1	152196814	.	C	T	111.22	PASS	AC=2;AF=1;AN=2;DP=160;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	152274685	.	T	A	4722.79	PASS	AC=2;AF=1;AN=2;DP=5961;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4341,400,0:0,0,94,40
chr1	152276149	.	C	T	4090.18	PASS	AC=1;AF=0.5;AN=2;DP=5119;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:193,197:390:99:4834,0,4662:104,89,110,87
chr1	152276459	.	C	T	1194.24	PASS	AC=1;AF=0.5;AN=2;DP=6745;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant34-variant35-filterInvariant37-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:271,68:339:99:666,0,6560:146,125,34,34
chr1	152276583	.	C	G	130.76	PASS	AC=1;AF=0.55;AN=2;DP=2046;set=filterInvariant5-filterInvariant11-variant13-filterInvariant14-filterInvariant29-variant34-filterInvariant35-variant37-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:176,21:197:99:113,0,7472:76,100,8,13
chr1	152276659	.	T	C	884.54	PASS	AC=1;AF=0.5;AN=2;DP=2509;set=variant3-filterInvariant5-variant8-variant9-filterInvariant10-filterInvariant14-filterInvariant16-filterInvariant18-filterInvariant27-variant29-variant30-filterInvariant31-filterInvariant34-filterInvariant37-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:168,19:187:99:367,0,8279:77,91,16,3
chr1	152276660	.	G	C	916	PASS	AC=1;AF=0.5;AN=2;DP=2538;set=variant3-filterInvariant5-variant8-variant9-filterInvariant10-variant14-filterInvariant16-filterInvariant18-filterInvariant27-variant29-variant30-filterInvariant31-filterInvariant34-filterInvariant37-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:168,20:188:99:367,0,8279:77,91,17,3
chr1	152276671	.	C	T,A	1554.49	PASS	AC=1,0;AF=0.417,0.083;AN=2;DP=3634;FractionInformativeReads=1;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-filterInvariant18-variant20-variant24-variant27-variant29-variant30-variant31-variant33-filterInvariant34-filterInvariant37-variant41	GT:DP:GQ:SB	0/1:200:99:81,89,23,7
chr1	152276772	.	C	A	5990.76	PASS	AC=1;AF=0.5;AN=2;DP=6098;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:223,202:425:99:4706,0,5685:116,107,105,97
chr1	152276871	.	A	G	8587.96	PASS	AC=1;AF=0.567;AN=2;DP=5320;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:193,179:372:99:6698,0,10145:86,107,78,101
chr1	152276889	.	A	G	7840.66	PASS	AC=1;AF=0.563;AN=2;DP=5100;set=variant3-variant5-variant8-variant9-variant10-variant13-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:189,173:362:99:6665,0,10125:84,105,77,96
chr1	152277055	.	C	G	2807.65	PASS	AC=1;AF=0.531;AN=2;DP=2992;set=variant3-variant5-variant8-variant9-variant10-variant13-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:112,93:205:99:2427,0,3254:63,49,44,49
chr1	152277168	.	A	G	5490.3	PASS	AC=1;AF=0.563;AN=2;DP=5848;set=variant3-variant5-variant7-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:254,153:407:99:3620,0,6889:152,102,86,67
chr1	152277345	.	C	T	7465.84	PASS	AC=1;AF=0.5;AN=2;DP=8434;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:351,293:644:99:6925,0,8757:168,183,145,148
chr1	152277396	.	T	C	6458.96	PASS	AC=1;AF=0.5;AN=2;DP=9984;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:314,253:567:99:6546,0,8136:145,169,103,150
chr1	152277717	.	C	A	2562.66	PASS	AC=1;AF=0.553;AN=2;DP=4768;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,83:246:99:1854,0,4467:85,78,33,50
chr1	152277822	.	T	C	311.22	PASS	AC=1;AF=0.5;AN=2;DP=2394;set=filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant16-variant29-filterInvariant31-filterInvariant35-filterInvariant37-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:179,22:201:99:370,0,10261:77,102,0,22
chr1	152277826	.	A	C	215.86	PASS	AC=1;AF=0.625;AN=2;DP=2268;set=filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant10-variant11-filterInvariant16-variant29-variant31-variant34-variant37-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:177,20:197:99:340,0,10242:74,103,0,20
chr1	152278434	.	T	G	590.11	PASS	AC=1;AF=0.5;AN=2;DP=916;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:673,0,820:24,0,19,0
chr1	152278555	.	T	C	1583.6	PASS	AC=1;AF=0.5;AN=2;DP=3736;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:268,63:331:99:1283,0,8148:200,68,48,15
chr1	152278689	.	C	A	17128.6	PASS	AC=1;AF=0.553;AN=2;DP=15493;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:608,605:1213:99:15765,0,16350:333,275,350,255
chr1	152278856	.	T	G	3075.79	PASS	AC=1;AF=0.5;AN=2;DP=10818;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:800,183:983:99:2825,0,21796:307,493,68,115
chr1	152279019	.	G	A	855.49	PASS	AC=1;AF=0.5;AN=2;DP=6004;set=filterInvariant3-filterInvariant5-variant8-variant9-variant10-filterInvariant14-variant16-filterInvariant18-filterInvariant27-variant29-filterInvariant30-variant31-variant37-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:435,80:515:99:563,0,10275:187,248,34,46
chr1	152279729	.	C	T	9589.15	PASS	AC=1;AF=0.553;AN=2;DP=12072;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:276,324:600:99:8073,0,6775:129,147,161,163
chr1	152279841	.	G	C	6045.84	PASS	AC=1;AF=0.553;AN=2;DP=7311;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:181,205:386:99:5340,0,4610:76,105,85,120
chr1	152279920	.	A	G	3613.43	PASS	AC=1;AF=0.5;AN=2;DP=4015;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,115:227:99:3634,0,3429:54,58,57,58
chr1	152280032	.	T	C	5021.65	PASS	AC=1;AF=0.5;AN=2;DP=6155;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:187,173:360:99:4411,0,4677:104,83,93,80
chr1	152280170	.	C	G	2853.77	PASS	AC=1;AF=0.5;AN=2;DP=4184;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,109:229:99:2791,0,2972:44,76,39,70
chr1	152280265	.	C	G	284.48	PASS	AC=1;AF=0.5;AN=2;DP=1557;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,25:73:99:800,0,1511:25,23,8,17
chr1	152280347	.	C	T	308.63	PASS	AC=1;AF=0.5;AN=2;DP=1856;set=variant7-variant8-filterInvariant10-filterInvariant14-filterInvariant16-filterInvariant27-filterInvariant29-variant31-variant34-filterInvariant35-variant37-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:110,25:135:99:723,0,4904:76,34,24,1
chr1	152280372	.	G	A	478.96	PASS	AC=1;AF=0.553;AN=2;DP=3898;set=filterInvariant3-filterInvariant5-variant7-variant8-filterInvariant9-variant10-filterInvariant11-filterInvariant14-variant16-filterInvariant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,43:189:99:1210,0,5700:88,58,42,1
chr1	152280471	.	C	G	586.75	PASS	AC=1;AF=0.5;AN=2;DP=7077;set=filterInvariant3-filterInvariant5-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant14-filterInvariant16-variant18-variant27-filterInvariant29-variant30-variant31-filterInvariant34-variant35-filterInvariant37-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:357,58:415:99:287,0,10124:182,175,30,28
chr1	152280736	.	T	C	5293.26	PASS	AC=1;AF=0.5;AN=2;DP=11580;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:480,113:593:99:3287,0,18797:218,262,60,53
chr1	152280759	.	A	G	5900.55	PASS	AC=1;AF=0.5;AN=2;DP=11214;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:463,130:593:99:3748,0,18778:202,261,66,64
chr1	152280782	.	A	G	13508	PASS	AC=1;AF=0.55;AN=2;DP=10441;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:184,365:549:99:11909,0,4241:81,103,169,196
chr1	152280788	.	T	G	4216.49	PASS	AC=1;AF=0.5;AN=2;DP=9811;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:393,146:539:99:2769,0,13526:169,224,72,74
chr1	152280864	.	A	G	6915.21	PASS	AC=1;AF=0.553;AN=2;DP=5961;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,217:333:99:6217,0,2882:54,62,95,122
chr1	152280900	.	T	G	2592.89	PASS	AC=1;AF=0.5;AN=2;DP=5399;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-filterInvariant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:230,90:320:99:2140,0,6430:107,123,44,46
chr1	152281007	.	A	G	7055.2	PASS	AC=1;AF=0.5;AN=2;DP=6497;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:308,147:455:99:5146,0,13137:155,153,76,71
chr1	152281008	.	A	G	7055.2	PASS	AC=1;AF=0.5;AN=2;DP=6507;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:309,146:455:99:5146,0,13137:155,154,76,70
chr1	152281039	.	G	A	4173.6	PASS	AC=1;AF=0.5;AN=2;DP=7267;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:325,148:473:99:3055,0,8473:175,150,73,75
chr1	152281228	.	C	G	4257.79	PASS	AC=1;AF=0.5;AN=2;DP=8921;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:444,155:599:99:3155,0,12529:219,225,85,70
chr1	152281290	.	A	G	8994.44	PASS	AC=1;AF=0.5;AN=2;DP=9449;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:443,163:606:99:5288,0,12429:225,218,85,78
chr1	152281304	.	A	C	8806.47	PASS	AC=1;AF=0.5;AN=2;DP=9521;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:439,168:607:99:3511,0,17261:223,216,85,83
chr1	152281479	.	G	T	10767.5	PASS	AC=1;AF=0.55;AN=2;DP=9703;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:168,382:550:99:10155,0,4225:77,91,177,205
chr1	152281690	.	C	T	9504.74	PASS	AC=1;AF=0.5;AN=2;DP=9297;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:311,299:610:99:7118,0,7411:149,162,138,161
chr1	152281948	.	G	A	4026.68	PASS	AC=1;AF=0.5;AN=2;DP=3663;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:137,123:260:99:3036,0,3732:67,70,58,65
chr1	152282267	.	G	A	4568.68	PASS	AC=1;AF=0.5;AN=2;DP=4596;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:145,180:325:99:4934,0,3980:74,71,87,93
chr1	152282311	.	C	T	4326.99	PASS	AC=1;AF=0.5;AN=2;DP=4132;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:137,174:311:99:4620,0,3558:71,66,84,90
chr1	152282917	.	G	T	3226.93	PASS	AC=1;AF=0.5;AN=2;DP=3411;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:142,130:272:99:3181,0,3733:68,74,68,62
chr1	152283236	.	T	C	5637.68	PASS	AC=1;AF=0.5;AN=2;DP=7120;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:188,192:380:99:5129,0,4724:91,97,90,102
chr1	152283283	.	C	T	5146.8	PASS	AC=1;AF=0.5;AN=2;DP=5124;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:169,185:354:99:4743,0,4177:84,85,82,103
chr1	152283862	.	G	C	2394.07	PASS	AC=1;AF=0.55;AN=2;DP=4011;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,102:223:99:2587,0,3468:68,53,51,51
chr1	152283975	.	A	G	4355.61	PASS	AC=1;AF=0.553;AN=2;DP=6411;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:193,141:334:99:3973,0,5309:104,89,76,65
chr1	152284854	.	A	G	3508.98	PASS	AC=1;AF=0.553;AN=2;DP=4811;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:157,97:254:99:2527,0,4529:77,80,53,44
chr1	152285099	.	C	T	5392.54	PASS	AC=1;AF=0.5;AN=2;DP=7604;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:227,168:395:99:4219,0,6234:117,110,80,88
chr1	152285930	.	G	A	4315.27	PASS	AC=1;AF=0.5;AN=2;DP=5890;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:201,163:364:99:3979,0,5206:103,98,89,74
chr1	152286002	.	T	C	4769.13	PASS	AC=1;AF=0.553;AN=2;DP=6275;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:194,173:367:99:4768,0,5083:99,95,94,79
chr1	152286032	.	C	T	4563.33	PASS	AC=1;AF=0.5;AN=2;DP=4946;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:183,195:378:99:4760,0,4723:92,91,106,89
chr1	152286367	.	C	A	3570.45	PASS	AC=1;AF=0.5;AN=2;DP=4841;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant18-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:139,148:287:99:3808,0,3633:71,68,71,77
chr1	152297517	.	A	G	602.21	PASS	AC=1;AF=0.5;AN=2;DP=292;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,12:16:99:378,0,131:4,0,10,2
chr1	152297830	.	C	G	198.09	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=3.59;FractionInformativeReads=1;MQ=60;MQRankSum=-1.059;QD=12.38;ReadPosRankSum=0.953;SOR=0.116;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:226,0,364:0,9,1,6
chr1	152321344	.	T	G	6624.44	PASS	AC=1;AF=0.5;AN=2;DP=7025;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant34-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:176,184:360:99:4670,0,4251:91,85,100,84
chr1	152322042	.	T	C	5710.24	PASS	AC=1;AF=0.526;AN=2;DP=5819;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant34-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:140,127:267:99:2931,0,3609:72,68,72,55
chr1	152323132	.	G	T	3257.84	PASS	AC=1;AF=0.5;AN=2;DP=3124;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant34-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:92,80:172:99:2239,0,2720:39,53,37,43
chr1	152323176	.	C	T	2859.79	PASS	AC=1;AF=0.5;AN=2;DP=190;FS=1.142;FractionInformativeReads=1;MQ=60;MQRankSum=-0.326;QD=15.05;ReadPosRankSum=-0.531;SOR=0.594;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:85,105:190:99:2888,0,2373:50,35,59,46
chr1	152324987	.	A	G	7774.54	PASS	AC=1;AF=0.5;AN=2;DP=608;FS=0.518;FractionInformativeReads=1;MQ=59.96;MQRankSum=0.347;QD=12.79;ReadPosRankSum=2.215;SOR=0.757;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:296,312:608:99:7803,0,7342:150,146,163,149
chr1	152325732	.	G	A	6882.04	PASS	AC=1;AF=0.5;AN=2;DP=8856;set=variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant34-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:257,192:449:99:5081,0,7014:128,129,108,84
chr1	152327469	.	C	T	5558.15	PASS	AC=1;AF=0.5;AN=2;DP=8949;set=variant3-variant5-variant8-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:432,174:606:99:3859,0,12253:224,208,71,103
chr1	152328411	.	A	G	8617.41	PASS	AC=1;AF=0.522;AN=2;DP=17618;set=filterInvariant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-filterInvariant14-variant16-variant18-variant27-variant29-variant30-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:488,293:781:99:8173,0,13047:233,255,169,124
chr1	152329435	.	C	T	3379.38	PASS	AC=1;AF=0.5;AN=2;DP=4722;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant34-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:151,127:278:99:3399,0,4058:78,73,67,60
chr1	152331240	.	G	A	1108.15	PASS	AC=1;AF=0.526;AN=2;DP=1635;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant34-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,29:93:99:648,0,1704:38,26,19,10
chr1	152382062	.	C	T	1168.11	PASS	AC=1;AF=0.529;AN=2;DP=1966;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,58:119:99:1452,0,1638:27,34,31,27
chr1	152382120	.	C	T	2474.89	PASS	AC=1;AF=0.559;AN=2;DP=2774;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,81:167:99:2027,0,2190:49,37,47,34
chr1	152384498	.	G	GT	162.49	PASS	AC=2;AF=0.893;AN=2;DP=348;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:27:358,27,0:0,0,7,1
chr1	152384759	.	A	G	1349.28	PASS	AC=1;AF=0.526;AN=2;DP=2179;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant16-variant18-variant27-variant29-variant30-variant34-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,55:129:99:1267,0,1633:32,42,23,32
chr1	152384833	.	T	C	1592	PASS	AC=2;AF=0.884;AN=2;DP=2388;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1886,171,0:0,0,16,41
chr1	152484129	.	G	A	3053.34	PASS	AC=1;AF=0.713;AN=2;DP=8366;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,120:232:99:2894,0,2907:50,62,55,65
chr1	152486860	.	T	G	82.72	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;set=variant11-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,80:2,1,2,0
chr1	152486989	.	T	C	194.83	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=2.447;FractionInformativeReads=1;MQ=60;MQRankSum=-0.473;QD=12.18;ReadPosRankSum=-0.893;SOR=0.132;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:223,0,217:7,1,5,3
chr1	152487979	.	C	T	2256.82	PASS	AC=1;AF=0.713;AN=2;DP=2973;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,55:86:99:1647,0,687:12,19,24,31
chr1	152488063	.	C	T	2822.4	PASS	AC=2;AF=0.725;AN=2;DP=4280;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3380,332,0:0,0,58,53
chr1	152488428	.	T	C	1482.57	PASS	AC=2;AF=0.732;AN=2;DP=2007;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1419,123,0:0,0,10,31
chr1	152538358	.	G	C	1409.29	PASS	AC=1;AF=0.577;AN=2;DP=1741;MQ=60;set=variant10-variant15-variant17-variant19-variant21-variant25-variant26-variant27-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,58:131:99:1548,0,1912:43,30,36,22
chr1	152552461	.	C	A	3769.74	PASS	AC=1;AF=0.571;AN=2;DP=3418;MQ=60;set=variant4-variant8-variant10-variant15-variant19-variant21-variant25-variant26-variant27-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,109:224:99:2940,0,3007:42,73,34,75
chr1	152595194	.	G	A	150.99	PASS	AC=1;AF=0.571;AN=2;DP=778;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:635,0,434:7,9,15,7
chr1	152595405	.	G	A	1486.22	PASS	AC=1;AF=0.5;AN=2;DP=367;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:98,78:176:99:2022,0,2597:61,37,45,33
chr1	152637150	.	A	T	2215.84	PASS	AC=1;AF=0.607;AN=2;DP=4493;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,76:130:99:2062,0,1316:21,33,23,53
chr1	152649114	.	T	A	357.84	PASS	AC=1;AF=0.625;AN=2;DP=418;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:228,0,229:2,6,0,6
chr1	152649137	.	C	G	127.5	PASS	AC=1;AF=0.5;AN=2;DP=37;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant21-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:111,0,205:0,5,0,3
chr1	152659266	.	G	T	1520.55	PASS	AC=1;AF=0.5;AN=2;DP=763;set=variant10-variant11-variant12-variant21-variant28-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,54:122:99:1409,0,1728:44,24,38,16
chr1	152659471	.	T	G	2688.04	PASS	AC=1;AF=0.5;AN=2;DP=1643;FractionInformativeReads=1;set=variant10-variant11-variant12-variant21-variant28-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:89,105:194:99:3034,0,2128:34,55,35,70
chr1	152659628	.	C	T	2808.74	PASS	AC=1;AF=0.5;AN=2;DP=422;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:94,99:193:99:2594,0,2351:56,38,55,44
chr1	152671913	.	C	G	692.44	PASS	AC=1;AF=0.5;AN=2;DP=397;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant12-variant21-variant28-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:588,0,751:8,19,8,14
chr1	152680909	.	G	A	112.69	PASS	AC=1;AF=0.5;AN=2;DP=163;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant21-variant28-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,9:28:99:237,0,487:8,11,3,6
chr1	152681543	.	T	C	3551.41	PASS	AC=2;AF=1;AN=2;DP=13896;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,319:319:99:9382,955,0:0,0,170,149
chr1	152681680	.	C	CAGCTCTGGGGGCTGCTGT	526.66	PASS	AC=2;AF=0.75;AN=2;DP=7196;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:6309,421,0:0,0,45,96
chr1	152691078	.	A	G	398.46	PASS	AC=1;AF=0.611;AN=2;DP=1318;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:634,0,761:15,14,11,17
chr1	152691272	.	G	T	94.73	PASS	AC=1;AF=0.615;AN=2;DP=302;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:206,0,318:1,8,1,6
chr1	152691943	.	G	A	959.31	PASS	AC=1;AF=0.611;AN=2;DP=2739;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,44:103:99:1054,0,1754:40,19,27,17
chr1	152692074	.	G	C	2947.8	PASS	AC=1;AF=0.611;AN=2;DP=7074;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:160,130:290:99:3347,0,4226:90,70,81,49
chr1	152692472	.	A	C	590.39	PASS	AC=1;AF=0.611;AN=2;DP=4019;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:90,94:184:99:2618,0,2364:47,43,48,46
chr1	152692588	.	A	G	1125.67	PASS	AC=1;AF=0.611;AN=2;DP=4682;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:110,103:213:99:2540,0,2829:53,57,49,54
chr1	152692781	.	G	T	1487.35	PASS	AC=1;AF=0.611;AN=2;DP=3756;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,102:173:99:2565,0,1864:39,32,54,48
chr1	152692862	.	G	C	1342.26	PASS	AC=1;AF=0.611;AN=2;DP=3180;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,87:163:99:2208,0,1899:38,38,35,52
chr1	152692948	.	T	A	1376.04	PASS	AC=1;AF=0.611;AN=2;DP=1858;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,47:100:99:1800,0,2055:14,39,17,30
chr1	152692952	.	G	A	1348.1	PASS	AC=1;AF=0.611;AN=2;DP=1771;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,47:96:99:1828,0,1990:14,35,17,30
chr1	152732106	.	A	T	1961.86	PASS	AC=1;AF=0.536;AN=2;DP=1878;MQ=60;set=variant4-variant10-variant15-variant19-variant21-variant26-variant27-variant31-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,73:143:99:1863,0,1762:42,28,41,32
chr1	152732436	.	G	C	1323.71	PASS	AC=1;AF=0.657;AN=2;DP=4669;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,69:133:99:2101,0,1803:30,34,32,37
chr1	152732567	.	G	A	2746.12	PASS	AC=1;AF=0.5;AN=2;DP=1213;MQ=60;set=variant7-variant10-variant19-variant21-variant28-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:89,105:194:99:2912,0,2430:49,40,57,48
chr1	152733301	.	T	A	2001.06	PASS	AC=1;AF=0.657;AN=2;DP=10979;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:177,169:346:99:4202,0,4447:90,87,84,85
chr1	152733797	.	A	AT	970.55	PASS	AC=1;AF=0.5;AN=2;DP=250;FS=0;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,60:116:99:1538,0,1416:27,29,28,32
chr1	152734390	.	C	T	1068.84	PASS	AC=1;AF=0.5;AN=2;DP=591;MQ=60;set=variant7-variant10-variant19-variant21-variant28-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1233,0,1230:16,28,25,24
chr1	152734633	.	T	A	42.2	PASS	AC=1;AF=0.71;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:22:258,0,22:1,1,1,6
chr1	152749091	.	C	T	3253.32	PASS	AC=1;AF=0.538;AN=2;DP=2906;MQ=60;set=variant10-variant15-variant19-variant21-variant26-variant27-variant31-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,126:226:99:3619,0,2612:57,43,65,61
chr1	152758656	.	C	A	40.14	PASS	AC=1;AF=0.5;AN=2;DP=88;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant12-variant21-variant24-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:226,0,101:2,1,5,1
chr1	152758915	.	G	T	205.92	PASS	AC=1;AF=0.533;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant15-variant16-variant19-variant21-variant26-variant27-variant31-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:165,0,478:5,11,3,4
chr1	152759678	.	C	T	1320.38	PASS	AC=1;AF=0.667;AN=2;DP=5620;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:95,103:198:99:2977,0,2461:64,31,75,28
chr1	152759950	.	A	G	1489.44	PASS	AC=1;AF=0.667;AN=2;DP=5936;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:95,76:171:99:1889,0,2766:44,51,36,40
chr1	152760075	.	A	G	463.06	PASS	AC=1;AF=0.5;AN=2;DP=2213;FractionInformativeReads=1;set=filterInvariant7-variant10-filterInvariant11-filterInvariant19-variant21-filterInvariant24-variant28-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:207,36:243:99:784,0,8569:116,91,13,23
chr1	152760093	.	T	C	279.74	PASS	AC=1;AF=0.5;AN=2;DP=1820;set=filterInvariant7-filterInvariant10-filterInvariant19-variant21-variant28-filterInvariant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:222,32:254:99:713,0,9309:116,106,11,21
chr1	152760096	.	A	T	266.11	PASS	AC=1;AF=0.5;AN=2;DP=1826;set=filterInvariant7-filterInvariant10-filterInvariant19-variant21-filterInvariant28-filterInvariant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:218,33:251:99:697,0,9228:112,106,11,22
chr1	152760106	.	G	A	4259.92	PASS	AC=1;AF=0.5;AN=2;DP=2027;set=variant10-variant34-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,215:256:99:5311,0,920:15,26,110,105
chr1	152760628	.	T	C	483.16	PASS	AC=1;AF=0.727;AN=2;DP=316;FractionInformativeReads=1;set=variant7-variant10-variant11-variant12-variant19-variant21-variant24-variant28-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:1220,0,4605:19,7,23,8
chr1	152760642	.	C	T	850.39	PASS	AC=1;AF=0.727;AN=2;DP=379;FractionInformativeReads=1;set=variant7-variant10-variant11-variant12-variant19-variant21-variant24-variant28-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,35:62:99:1382,0,4820:20,7,24,11
chr1	152760644	.	C	T	847.38	PASS	AC=1;AF=0.727;AN=2;DP=389;FractionInformativeReads=1;set=variant7-variant10-variant11-variant12-variant19-variant21-variant24-variant28-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,35:63:99:1382,0,4820:21,7,24,11
chr1	152760647	.	C	A	905.12	PASS	AC=1;AF=0.727;AN=2;DP=403;FractionInformativeReads=1;set=variant7-variant10-variant11-variant12-variant19-variant21-variant24-variant28-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:1376,0,4887:22,8,24,11
chr1	152760651	.	C	T	908.13	PASS	AC=1;AF=0.727;AN=2;DP=424;FractionInformativeReads=1;set=variant7-variant10-variant11-variant12-variant19-variant21-variant24-variant28-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,35:66:99:1376,0,4887:23,8,24,11
chr1	152770521	.	G	A	6803.12	PASS	AC=1;AF=0.55;AN=2;DP=2046;set=variant7-variant10-filterInvariant11-variant12-variant19-variant21-variant24-variant28-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,134:215:99:3753,0,2161:43,38,77,57
chr1	152770589	.	A	G	7269.22	PASS	AC=1;AF=0.591;AN=2;DP=4288;set=variant7-variant10-variant11-variant12-variant19-variant21-variant24-variant28-variant34-variant37-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:384,90:474:99:965,0,9710:198,186,54,36
chr1	152778861	.	T	C	74.56	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.322;QD=9.32;ReadPosRankSum=-0.322;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:103,0,362:5,0,3,0
chr1	152798560	.	G	A	410.51	PASS	AC=1;AF=0.5;AN=2;DP=124;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,30:70:99:596,0,1020:24,16,16,14
chr1	152815406	.	G	A	506.26	PASS	AC=1;AF=0.5;AN=2;DP=54;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:245,0,308:6,6,7,3
chr1	152850906	.	G	A	98.75	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:469,0,393:8,10,6,13
chr1	152850938	.	A	C	143.94	PASS	AC=1;AF=0.536;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant10-variant11-variant12-variant20-variant24-variant25-variant32-variant34-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:381,0,384:7,9,6,10
chr1	152857481	.	C	A	105.36	PASS	AC=1;AF=0.5;AN=2;DP=49;FractionInformativeReads=1;MQ=60;set=variant10-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:225,0,291:4,7,4,6
chr1	152882610	.	A	G	1129.91	PASS	AC=1;AF=0.563;AN=2;DP=700;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant20-variant32-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,39:80:99:1009,0,1078:19,22,20,19
chr1	152882982	.	C	G,CAGCAGCAGGAGGGGCAGCTGGAGCTCTCTG	773.67	PASS	AC=1,1;AF=0.103,0.868;AN=2;DP=1807;set=variant5-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant3-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant4-variant32-variant33-variant6-variant34-variant35-variant8-variant36-variant38-variant39-variant40-variant9-variant41-variant42-variant43	GT:DP:GQ:SB	1/2:39:99:0,0,27,12
chr1	152883608	.	G	A	2708.78	PASS	AC=1;AF=0.563;AN=2;DP=1398;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant20-variant32-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,94:166:99:2424,0,1779:32,40,47,47
chr1	152883680	.	A	G	2849.45	PASS	AC=1;AF=0.563;AN=2;DP=1342;set=variant5-variant10-variant20-variant32-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,106:168:99:3979,0,2076:32,30,52,54
chr1	152883711	.	G	C	2924.46	PASS	AC=1;AF=0.563;AN=2;DP=1261;MQ=60;set=variant5-variant10-variant20-variant32-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,97:159:99:3716,0,1961:30,32,45,52
chr1	152884111	.	G	A	1156.03	PASS	AC=1;AF=0.563;AN=2;DP=771;MQ=60;set=variant5-variant10-variant20-variant32-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,35:86:99:903,0,1519:26,25,15,20
chr1	152884246	.	G	T	1768.89	PASS	AC=1;AF=0.563;AN=2;DP=528;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant20-variant32-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:1029,0,1716:10,20,12,15
chr1	152884247	.	A	G	1768.89	PASS	AC=1;AF=0.563;AN=2;DP=521;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant20-variant32-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:1029,0,1716:10,20,12,14
chr1	152944594	.	C	T	1406.3	PASS	AC=1;AF=0.737;AN=2;DP=6722;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,87:172:99:2361,0,2351:40,45,42,45
chr1	152957573	.	T	C	300.5	PASS	AC=1;AF=0.629;AN=2;DP=719;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:181,0,225:8,1,5,0
chr1	152957832	.	C	A	493.88	PASS	AC=1;AF=0.636;AN=2;DP=2409;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,45:99:99:1184,0,1565:23,31,23,22
chr1	152957887	.	G	A	473.52	PASS	AC=1;AF=0.632;AN=2;DP=2982;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,57:123:99:1512,0,1994:35,31,30,27
chr1	152974063	.	G	A	45.98	PASS	AC=2;AF=0.816;AN=2;DP=70;FS=0;MQ=60;set=variant-variant2-variant6-variant7-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant29-variant32-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:94,9,0:0,0,2,1
chr1	152974119	.	C	T	32.98	PASS	AC=1;AF=0.667;AN=2;DP=204;MQ=60;set=variant-variant2-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,79:2,1,1,1
chr1	152974247	.	C	G	326.41	PASS	AC=1;AF=0.625;AN=2;DP=639;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:597,0,461:5,6,7,8
chr1	152974254	.	C	T	326.41	PASS	AC=1;AF=0.613;AN=2;DP=605;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:625,0,458:5,6,7,9
chr1	152974285	.	A	G	197.45	PASS	AC=1;AF=0.661;AN=2;DP=523;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:314,0,163:3,4,5,8
chr1	152975277	.	G	A	1139.59	PASS	AC=1;AF=0.636;AN=2;DP=1553;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:783,0,744:18,7,14,9
chr1	152975495	.	G	A	2039.17	PASS	AC=1;AF=0.636;AN=2;DP=8178;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,133:264:99:3253,0,3196:75,56,72,61
chr1	152975763	.	C	A	977.61	PASS	AC=1;AF=0.636;AN=2;DP=3104;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,50:97:99:1624,0,2128:28,19,29,21
chr1	152975829	.	A	G	1704	PASS	AC=1;AF=0.636;AN=2;DP=5411;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,80:157:99:2507,0,1905:40,37,51,29
chr1	152975941	.	C	G	1657.28	PASS	AC=1;AF=0.629;AN=2;DP=6647;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,97:203:99:2463,0,2864:52,54,50,47
chr1	152976108	.	C	T	4631.35	PASS	AC=1;AF=0.636;AN=2;DP=6552;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,120:233:99:4589,0,6043:62,51,68,52
chr1	152976114	.	G	C	4801.4	PASS	AC=1;AF=0.636;AN=2;DP=6857;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,124:244:99:4710,0,6040:65,55,76,48
chr1	152976306	.	T	G	3571.28	PASS	AC=1;AF=0.636;AN=2;DP=8881;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:129,143:272:99:3765,0,3261:57,72,57,86
chr1	153003803	.	AT	A	312.26	PASS	AC=1;AF=0.613;AN=2;DP=516;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:95:95,0,156:1,5,0,4
chr1	153003853	.	C	T	241.77	PASS	AC=2;AF=0.68;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant13-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	153004652	.	G	A	199.33	PASS	AC=1;AF=0.606;AN=2;DP=750;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:233,0,545:14,3,7,2
chr1	153004721	.	A	T	614.64	PASS	AC=1;AF=0.606;AN=2;DP=2324;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,34:75:99:711,0,1102:25,16,19,15
chr1	153004778	.	C	T	734.75	PASS	AC=1;AF=0.606;AN=2;DP=3818;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,40:101:99:967,0,1645:30,31,22,18
chr1	153004809	.	T	C	813.73	PASS	AC=1;AF=0.606;AN=2;DP=4327;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,51:113:99:1190,0,1614:32,30,28,23
chr1	153004848	.	T	C	1236.8	PASS	AC=1;AF=0.606;AN=2;DP=4223;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,47:107:99:1745,0,2319:29,31,23,24
chr1	153004853	.	C	T	1239.81	PASS	AC=1;AF=0.606;AN=2;DP=4169;FractionInformativeReads=1;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,46:102:99:1754,0,2238:28,28,24,22
chr1	153004983	.	C	T	509.23	PASS	AC=1;AF=0.606;AN=2;DP=2901;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-filterInvariant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,55:96:99:1591,0,1214:25,16,31,24
chr1	153005156	.	C	T	1325.87	PASS	AC=1;AF=0.606;AN=2;DP=5994;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,87:174:99:2176,0,2213:43,44,40,47
chr1	153012354	.	T	G	463.45	PASS	AC=1;AF=0.6;AN=2;DP=1573;FractionInformativeReads=1;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:763,0,1082:11,11,9,11
chr1	153012356	.	C	T	463.45	PASS	AC=1;AF=0.6;AN=2;DP=1560;FractionInformativeReads=1;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:763,0,1082:11,11,9,11
chr1	153013630	.	G	C,A	454.22	PASS	AC=1,1;AF=0.6,0.014;AN=2;DP=2135;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:75:99:0,0,34,41
chr1	153013742	.	G	T	127.69	PASS	AC=1;AF=0.609;AN=2;DP=399;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:431,0,300:3,6,3,10
chr1	153014082	.	T	A	254.87	PASS	AC=1;AF=0.615;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant35-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:185,0,193:4,2,5,2
chr1	153029137	.	C	T	557.87	PASS	AC=1;AF=0.597;AN=2;DP=1249;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:893,0,957:7,21,10,20
chr1	153044009	.	G	A	215.07	PASS	AC=1;AF=0.594;AN=2;DP=1047;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,12:46:99:281,0,993:24,10,9,3
chr1	153044071	.	C	A	628.07	PASS	AC=1;AF=0.594;AN=2;DP=2335;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,45:97:99:1022,0,1250:27,25,26,19
chr1	153066072	.	T	C	3099.63	PASS	AC=1;AF=0.6;AN=2;DP=531;FractionInformativeReads=1;set=variant10-variant20-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,59:104:99:1512,0,1083:22,23,28,31
chr1	153066262	.	T	C	661.97	PASS	AC=1;AF=0.515;AN=2;DP=3787;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,69:93:99:1923,0,462:12,12,28,41
chr1	153113913	.	A	G	702.39	PASS	AC=1;AF=0.764;AN=2;DP=2820;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,29:77:99:814,0,1300:28,20,18,11
chr1	153114077	.	G	T	436.36	PASS	AC=1;AF=0.7;AN=2;DP=402;MQ=60;set=variant2-variant5-variant8-variant10-variant12-variant13-variant17-variant18-variant20-variant30-variant32-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:586,0,573:5,15,5,16
chr1	153189937	.	G	A	235.34	PASS	AC=1;AF=0.545;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant10-variant14-variant16-variant26-variant29-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:321,0,315:9,4,9,6
chr1	153189978	.	A	G	270.03	PASS	AC=1;AF=0.617;AN=2;DP=790;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant14-variant15-variant16-variant19-variant22-variant23-variant26-variant27-variant29-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:520,0,339:8,7,12,8
chr1	153190146	.	G	T	169.46	PASS	AC=1;AF=0.545;AN=2;DP=230;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant10-variant14-variant16-variant26-variant29-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:329,0,413:6,10,5,9
chr1	153190590	.	G	GT	787.04	PASS	AC=1;AF=0.545;AN=2;DP=935;MQ=60;set=variant5-variant8-variant10-variant14-variant16-variant26-variant29-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,37:84:99:865,0,1183:26,21,24,13
chr1	153191512	.	T	A	2110.24	PASS	AC=1;AF=0.55;AN=2;DP=1760;MQ=60;set=variant5-variant8-variant10-variant14-variant16-variant26-variant29-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:101,72:173:99:1718,0,2427:57,44,37,35
chr1	153233488	.	C	CGGCGGT	1608	PASS	AC=1;AF=0.636;AN=2;DP=739;MQ=60;set=variant5-variant8-variant10-variant13-variant14-variant16-variant26-variant27-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:591,0,1276:9,13,6,10
chr1	153233701	.	A	C	1536.69	PASS	AC=1;AF=0.714;AN=2;DP=1002;set=variant5-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant24-variant26-variant27-variant28-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:483,0,440:12,10,10,8
chr1	153233991	.	A	ACTCTGGCGGCGG	862.95	PASS	AC=1;AF=0.762;AN=2;DP=2681;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:1562,0,1648:16,20,18,18
chr1	153234295	.	G	A	1248.61	PASS	AC=1;AF=0.636;AN=2;DP=1078;MQ=60;set=variant5-variant8-variant10-variant13-variant14-variant16-variant26-variant27-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,36:83:99:877,0,1184:27,20,20,16
chr1	153234503	.	C	T	1148.58	PASS	AC=1;AF=0.5;AN=2;DP=498;MQ=60;set=variant18-variant25-variant29-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,57:114:99:1466,0,1609:25,32,18,39
chr1	153234602	.	T	C	315.51	PASS	AC=1;AF=0.762;AN=2;DP=1316;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:503,0,489:7,13,3,14
chr1	153270362	.	C	G	244.3	PASS	AC=1;AF=0.615;AN=2;DP=1256;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,35:63:99:971,0,782:15,13,25,10
chr1	153270857	.	T	C	222.45	PASS	AC=1;AF=0.632;AN=2;DP=792;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,21:27:99:641,0,147:1,5,5,16
chr1	153271524	.	C	T	349.25	PASS	AC=1;AF=0.618;AN=2;DP=1908;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:1009,0,1053:28,12,25,13
chr1	153277423	.	C	T	1568.7	PASS	AC=1;AF=0.615;AN=2;DP=3024;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,45:96:99:1228,0,1303:24,27,21,24
chr1	153277660	.	A	T	546.44	PASS	AC=1;AF=0.635;AN=2;DP=1074;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,35:56:99:945,0,415:10,11,11,24
chr1	153277768	.	C	T	92.19	PASS	AC=1;AF=0.7;AN=2;DP=162;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant8-variant11-variant13-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:67:246,0,67:0,2,0,6
chr1	153279462	.	TAAG	T	2844.21	PASS	AC=2;AF=0.808;AN=2;DP=2793;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2823,192,0:0,0,42,22
chr1	153282892	.	C	T	279.29	PASS	AC=1;AF=0.596;AN=2;DP=667;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:319,0,482:12,6,9,3
chr1	153283004	.	C	T	3566.18	PASS	AC=2;AF=0.833;AN=2;DP=4691;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3373,312,0:0,0,62,42
chr1	153283179	.	A	G	1295.35	PASS	AC=1;AF=0.615;AN=2;DP=3212;MQ=60;set=variant2-variant5-variant6-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,68:122:99:1792,0,1429:19,35,25,43
chr1	153302827	.	T	G	3980.05	PASS	AC=2;AF=0.825;AN=2;DP=4380;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3601,291,0:0,0,23,74
chr1	153302887	.	G	A	640.75	PASS	AC=1;AF=0.607;AN=2;DP=1423;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:594,0,761:6,17,6,13
chr1	153303638	.	A	G	291.54	PASS	AC=1;AF=0.6;AN=2;DP=955;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,29:47:99:800,0,518:3,15,8,21
chr1	153309981	.	G	A	295.33	PASS	AC=1;AF=0.615;AN=2;DP=873;MQ=60;set=variant2-variant5-variant6-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,15:43:99:459,0,711:11,17,5,10
chr1	153312644	.	A	G	719.91	PASS	AC=2;AF=0.929;AN=2;DP=2090;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1741,167,0:0,0,39,17
chr1	153313912	.	A	G	255.13	PASS	AC=2;AF=0.824;AN=2;DP=390;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:512,45,0:0,0,11,4
chr1	153314153	.	C	A	1547.96	PASS	AC=2;AF=0.8;AN=2;DP=2713;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1875,188,0:0,0,33,30
chr1	153314347	.	C	T	465.43	PASS	AC=2;AF=0.808;AN=2;DP=583;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:554,48,0:0,0,3,13
chr1	153315467	.	T	TAAG	359.93	PASS	AC=2;AF=0.929;AN=2;DP=1118;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1215,81,0:0,0,23,4
chr1	153315579	.	A	G	594.95	PASS	AC=2;AF=0.929;AN=2;DP=3980;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3283,317,0:0,0,58,48
chr1	153315784	.	T	C	469.53	PASS	AC=2;AF=0.929;AN=2;DP=1605;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1370,129,0:0,0,13,30
chr1	153320159	.	G	C	102.99	PASS	AC=2;AF=0.853;AN=2;DP=303;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:196,18,0:0,0,5,1
chr1	153320334	.	T	C	1524.15	PASS	AC=2;AF=0.8;AN=2;DP=2452;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1678,159,0:0,0,32,21
chr1	153320372	.	T	G	1879.53	PASS	AC=2;AF=0.8;AN=2;DP=3191;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2196,224,0:0,0,42,33
chr1	153320581	.	T	C	363.46	PASS	AC=2;AF=0.8;AN=2;DP=773;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:795,63,0:0,0,5,16
chr1	153321010	.	C	A	706.98	PASS	AC=2;AF=0.8;AN=2;DP=1217;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1238,111,0:0,0,27,10
chr1	153321197	.	T	G	1957.08	PASS	AC=2;AF=0.8;AN=2;DP=1966;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1519,144,0:0,0,18,30
chr1	153321217	.	G	GAGA	2205.09	PASS	AC=2;AF=0.8;AN=2;DP=1617;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1744,117,0:0,0,15,24
chr1	153321348	.	G	T	142.99	PASS	AC=2;AF=0.829;AN=2;DP=437;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:607,45,0:0,0,5,10
chr1	153321368	.	CCAGGTAGCT	C	142.73	PASS	AC=2;AF=0.833;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:532,36,0:0,0,3,9
chr1	153321407	.	C	T	94.88	PASS	AC=2;AF=0.868;AN=2;DP=186;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,2,6
chr1	153321413	.	C	G	91.72	PASS	AC=2;AF=0.867;AN=2;DP=156;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:394,27,0:0,0,3,6
chr1	153390411	.	T	TA	570.61	PASS	AC=1;AF=0.875;AN=2;DP=1058;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:409,0,227:6,4,11,4
chr1	153390491	.	G	A	294.95	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=0;FractionInformativeReads=0.981;MQ=60;MQRankSum=-0.94;QD=5.46;ReadPosRankSum=-1.463;SOR=0.813;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,16:53:99:323,0,1019:24,13,11,5
chr1	153390542	.	G	C	608.2	PASS	AC=1;AF=0.5;AN=2;DP=673;set=variant10-variant11-variant13-variant27-variant32-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,25:76:99:628,0,1478:31,20,18,7
chr1	153391729	.	G	A	1769.29	PASS	AC=1;AF=0.5;AN=2;DP=2243;FractionInformativeReads=1;set=variant10-variant11-variant12-variant13-variant23-variant27-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:75,79:154:99:1918,0,1865:42,33,44,35
chr1	153391786	.	T	C	1822.4	PASS	AC=1;AF=0.5;AN=2;DP=2459;set=variant10-variant11-variant12-variant13-variant23-variant27-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,71:145:99:1767,0,1701:35,39,30,41
chr1	153392042	.	A	C	1346.5	PASS	AC=1;AF=0.5;AN=2;DP=761;set=variant10-variant11-variant12-variant13-variant23-variant27-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:936,0,1640:14,17,11,14
chr1	153392044	.	C	G	1346.5	PASS	AC=1;AF=0.5;AN=2;DP=758;set=variant10-variant11-variant12-variant13-variant23-variant27-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:936,0,1640:14,17,11,13
chr1	153392302	.	G	T	932.85	PASS	AC=1;AF=0.5;AN=2;DP=1192;MQ=60;set=variant10-variant11-variant12-variant13-variant23-variant27-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:72,34:106:99:944,0,1842:42,30,23,11
chr1	153392993	.	T	C	1070.47	PASS	AC=1;AF=0.5;AN=2;DP=1094;MQ=60;set=variant10-variant11-variant12-variant13-variant23-variant27-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,46:93:99:1148,0,1078:22,25,22,24
chr1	153393048	.	C	T	915.94	PASS	AC=1;AF=0.5;AN=2;DP=1053;set=variant10-variant11-variant12-variant13-variant23-variant27-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:929,0,979:16,20,17,19
chr1	153393318	.	T	C	858.95	PASS	AC=1;AF=0.5;AN=2;DP=1043;set=variant10-variant11-variant12-variant13-variant23-variant27-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,28:95:99:914,0,1852:27,40,6,22
chr1	153393554	.	T	C	2350.51	PASS	AC=1;AF=0.5;AN=2;DP=1815;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant12-variant13-variant23-variant27-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,62:120:99:1711,0,1672:30,28,29,33
chr1	153410822	.	C	A	4761.48	PASS	AC=1;AF=0.813;AN=2;DP=5344;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,68:134:99:1824,0,1771:26,40,27,41
chr1	153411720	.	T	C	625.95	PASS	AC=1;AF=0.5;AN=2;DP=462;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant19-variant23-variant28-variant32-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,12:44:99:277,0,769:15,17,6,6
chr1	153411752	.	C	T	669.68	PASS	AC=1;AF=0.5;AN=2;DP=427;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant19-variant23-variant28-variant32-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,13:47:99:282,0,825:16,18,5,8
chr1	153411867	.	G	A	223.58	PASS	AC=1;AF=0.813;AN=2;DP=492;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:187,0,103:0,3,2,5
chr1	153412392	.	T	G	2025.58	PASS	AC=2;AF=0.884;AN=2;DP=4993;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4189,413,0:0,0,71,67
chr1	153430285	.	C	A	2353.85	PASS	AC=1;AF=0.5;AN=2;DP=223;FS=1.617;FractionInformativeReads=1;MQ=60;MQRankSum=-2.419;QD=10.56;ReadPosRankSum=-3.451;SOR=0.592;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:118,105:223:99:2382,0,2867:53,65,50,55
chr1	153431200	.	T	C	1980.81	PASS	AC=2;AF=0.884;AN=2;DP=2956;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2668,207,0:0,0,54,15
chr1	153431406	.	C	G	5055.4	PASS	AC=2;AF=0.977;AN=2;DP=7962;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:6378,585,0:0,0,76,119
chr1	153432265	.	C	G	1870.3	PASS	AC=2;AF=0.884;AN=2;DP=2593;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1368,129,0:0,0,26,17
chr1	153538449	.	C	T	214.45	PASS	AC=1;AF=0.826;AN=2;DP=628;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:228,0,280:2,8,2,6
chr1	153581758	.	C	T	189.09	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=3.779;FractionInformativeReads=1;MQ=60;MQRankSum=0.634;QD=6.3;ReadPosRankSum=-0.317;SOR=1.65;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:217,0,662:9,12,2,7
chr1	153588340	.	C	T	1260.29	PASS	AC=2;AF=0.603;AN=2;DP=3810;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant30-variant32-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3256,329,0:0,0,57,53
chr1	153589205	.	G	GTCTC,GTC	94.2	PASS	AC=1,1;AF=0.866,0.11;AN=2;DP=354;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:16:99:0,0,11,5
chr1	153604029	.	C	T	4554.55	PASS	AC=2;AF=0.841;AN=2;DP=5734;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4402,432,0:0,0,74,71
chr1	153606394	.	A	G	268.44	PASS	AC=1;AF=0.5;AN=2;DP=61;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:522,0,501:14,4,14,2
chr1	153617510	.	CT	CTT,C	88.85	PASS	AC=0,1;AF=0.2,0.3;AN=2;DP=197;MQ=60;set=variant2-filterInvariant10-variant13-variant17-variant19-filterInvariant33-variant36-variant37-variant38-filterInvariant41	GT:DP:GQ:SB	0/2:25:81:14,5,4,2
chr1	153636432	.	TTACTAC	TTAC,T,TTACTACTAC	41.39	PASS	AC=1,0,0;AF=0.45,0.05,0.1;AN=2;DP=109;MQ=60;set=variant10-variant11-variant17-variant18-variant19-variant20-variant37-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:13:99:5,0,8,0
chr1	153642835	.	G	C	4100.52	PASS	AC=1;AF=0.977;AN=2;DP=5174;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:42,62:104:99:1622,0,1049:18,24,27,35
chr1	153651269	.	TTCTCTCTCTC	TTCTCTCTC,T,TTCTCTCTCTCTC,TTCTCTC	3503.19	PASS	AC=1,0,0,0;AF=0.569,0.014,0.028,0.028;AN=2;DP=4267;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	0/1:97:98:45,41,6,5
chr1	153662544	.	ATCTCTCTCTC	ATCTCTCTC,A,ATCTCTC,ATCTC	42.52	PASS	AC=0,0,0,1;AF=0.063,0.188,0.125,0.188;AN=2;DP=121;set=variant16-variant18-variant20-variant21-variant34-variant37-variant41-filterInvariant43	GT:DP:GQ:SB	0/4:7:23:0,1,2,4
chr1	153662584	.	GTCTCTCTC	GTCTCTC,GTCTC,G,GTCTCTCTCTC	77.04	PASS	AC=2,0,0,0;AF=0.615,0.077,0.077,0.077;AN=2;DP=101;FS=0;set=variant7-variant12-variant13-variant15-variant20-variant22-variant27-variant29-variant34-variant35-variant37-variant41-variant44	GT:DP:GQ:SB	1/1:3:9:0,0,2,1
chr1	153662617	.	T	A	100.1	PASS	AC=2;AF=0.833;AN=2;DP=86;FS=0;set=variant7-variant12-variant15-variant22-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:10:101,10,0:0,0,3,0
chr1	153700841	.	A	G	2598.18	PASS	AC=2;AF=0.977;AN=2;DP=4645;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3674,360,0:0,0,59,61
chr1	153701376	.	G	C	424.22	PASS	AC=2;AF=1;AN=2;DP=530;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:565,51,0:0,0,11,6
chr1	153731750	.	GAAA	GAA,GA,GAAAA,G	256.6	PASS	AC=1,0,1,0;AF=0.556,0.019,0.056,0.019;AN=2;DP=474;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-filterInvariant15-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant32-variant33-variant35-variant36-variant41-variant42-variant43	GT:DP:GQ:SB	1/3:20:99:1,0,14,5
chr1	153732640	.	A	G	130.47	PASS	AC=2;AF=0.74;AN=2;DP=153;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant21-variant22-variant23-variant25-variant26-variant32-variant33-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:215,15,0:0,0,5,0
chr1	153732708	.	CAAAAAAA	CAAAAAAAA,CAAAAAA,C,CAA,CAAAAA,CAAAA	80.81	PASS	AC=0,0,0,0,0,1;AF=0.077,0.077,0.115,0.038,0.115,0.077;AN=2;DP=366;set=variant3-filterInvariant4-variant10-variant14-variant18-variant21-variant29-variant35-variant37-variant39-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	0/6:17:99:6,6,5,0
chr1	153732973	.	G	A	467.47	PASS	AC=1;AF=0.5;AN=2;DP=154;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant17-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,12:35:99:272,0,821:3,20,4,8
chr1	153735240	.	A	G	520.9	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=3.798;FractionInformativeReads=1;MQ=60;MQRankSum=0.06;QD=9.47;ReadPosRankSum=2.346;SOR=1.252;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,23:55:99:549,0,744:15,17,8,15
chr1	153741512	.	C	A	154.57	PASS	AC=1;AF=0.5;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant17-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:366,0,342:4,8,5,10
chr1	153742142	.	AT	A	118.17	PASS	AC=1;AF=0.5;AN=2;DP=75;MQ=60;set=variant10-variant11-variant17-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:98:98,0,211:5,4,4,1
chr1	153742437	.	T	C	517.79	PASS	AC=1;AF=0.5;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant17-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,10:32:99:334,0,1024:7,15,2,8
chr1	153742469	.	A	G	280.59	PASS	AC=1;AF=0.5;AN=2;DP=89;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant17-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:306,0,731:0,10,2,6
chr1	153742534	.	GGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	G,GGTGTGTGTGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGTGTGTGTGTGT	233.56	PASS	AC=1,0,0,0;AF=0.2,0.1,0.4,0.05;AN=2;DP=88;FS=0;MQ=60;set=variant11-variant12-variant16-variant17-variant24-variant28-variant34-variant36-variant39-variant41	GT:DP:GQ:SB	0/1:6:27:1,0,4,1
chr1	153742578	.	T	C	218.55	PASS	AC=1;AF=0.5;AN=2;DP=39;FractionInformativeReads=1;MQ=60;set=variant11-variant17-variant18-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:24:247,0,24:1,0,5,1
chr1	153742610	.	GGT	G	387.74	PASS	AC=1;AF=0.5;AN=2;DP=64;MQ=60;set=variant11-variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:85:209,0,85:2,3,7,0
chr1	153743234	.	T	C	738.78	PASS	AC=1;AF=0.615;AN=2;DP=2125;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant11-variant13-variant15-variant18-variant20-variant21-variant23-variant25-variant26-variant28-variant30-variant32-variant33-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,25:57:99:611,0,874:15,17,10,15
chr1	153743289	.	C	G	2464.12	PASS	AC=1;AF=0.559;AN=2;DP=1230;MQ=60;set=variant3-variant5-variant7-variant10-variant11-variant17-variant18-variant20-variant21-variant23-variant33-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,33:59:99:818,0,504:11,15,15,18
chr1	153743317	.	G	A	1789.09	PASS	AC=1;AF=0.641;AN=2;DP=2198;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:723,0,554:11,13,12,18
chr1	153745128	.	G	C	1499.83	PASS	AC=1;AF=0.5;AN=2;DP=776;MQ=60;set=variant10-variant11-variant17-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,69:145:99:1913,0,2174:25,51,22,47
chr1	153746781	.	G	A	110.48	PASS	AC=1;AF=0.5;AN=2;DP=54;FractionInformativeReads=1;MQ=60;set=variant11-variant17-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:277,0,185:5,2,7,3
chr1	153747616	.	C	T	2381.77	PASS	AC=1;AF=0.5;AN=2;DP=1075;MQ=60;set=variant10-variant11-variant17-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,93:202:99:2186,0,2896:58,51,46,47
chr1	153748219	.	C	T	1678.06	PASS	AC=1;AF=0.5;AN=2;DP=653;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant17-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,57:125:99:1391,0,1853:39,29,30,27
chr1	153752152	.	GCT	G	355.62	PASS	AC=1;AF=0.536;AN=2;DP=276;MQ=60;set=variant8-variant10-variant12-variant18-variant20-variant21-variant22-variant25-variant27-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,6:20:99:210,0,569:8,6,5,1
chr1	153777669	.	G	T	1178.08	PASS	AC=1;AF=0.645;AN=2;DP=1337;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,29:50:99:653,0,524:12,9,16,13
chr1	153777848	.	C	T	1121.74	PASS	AC=1;AF=0.645;AN=2;DP=1299;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:694,0,528:9,12,15,12
chr1	153779089	.	GT	G,GTT	3599.31	PASS	AC=2,0;AF=0.672,0.016;AN=2;DP=3988;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:103:99:5,2,57,39
chr1	153779412	.	A	G	9268.77	PASS	AC=1;AF=0.645;AN=2;DP=9721;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:149,111:260:99:2726,0,3674:67,82,57,54
chr1	153780298	.	C	T	1928.3	PASS	AC=1;AF=0.645;AN=2;DP=2375;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,31:85:99:678,0,1406:28,26,17,14
chr1	153781888	.	G	A	1780.99	PASS	AC=1;AF=0.645;AN=2;DP=1989;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,16:44:99:401,0,761:16,12,9,7
chr1	153782188	.	CA	C,CAA,CAAA,CAAAAA	161.02	PASS	AC=1,0,0,0;AF=0.288,0.154,0.038,0.019;AN=2;DP=2369;set=filterInvariant-filterInvariant2-filterInvariant4-filterInvariant6-variant9-filterInvariant10-variant14-filterInvariant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-filterInvariant21-filterInvariant25-variant27-filterInvariant31-variant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant38-variant39-variant40-filterInvariant41	GT:DP:GQ:SB	0/1:57:99:22,17,12,6
chr1	153784666	.	CTT	CTTT,CT,C,CTTTT	280.89	PASS	AC=0,1,0,0;AF=0.182,0.466,0.023,0.011;AN=2;DP=1866;set=Intersection	GT:DP:GQ:SB	0/2:35:41:2,5,8,20
chr1	153790790	.	CTTT	CTT,C,CT,CTTTT	142.98	PASS	AC=0,0,1,0;AF=0.5,0.019,0.148,0.019;AN=2;DP=436;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant29-variant30-variant31-variant32-variant35-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/3:9:69:0,3,1,5
chr1	153791159	.	G	A	924.52	PASS	AC=1;AF=0.5;AN=2;DP=102;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,21:49:99:551,0,859:18,10,15,6
chr1	153792051	.	CAAG	C	1939.94	PASS	AC=1;AF=0.5;AN=2;DP=152;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,37:67:99:1381,0,1362:21,9,26,11
chr1	153800931	.	TACACACACAC	TACAC,TAC,TACACACACACAC,TACACACACACACAC,T	206.46	PASS	AC=0,0,0,2,0;AF=0.016,0.484,0.194,0.113,0.032;AN=2;DP=292;FS=0;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/4:3:9:0,0,1,2
chr1	153904574	.	T	C	606.44	PASS	AC=1;AF=0.635;AN=2;DP=1176;set=variant-variant3-variant7-variant9-variant10-variant11-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,24:43:99:644,0,461:12,7,16,8
chr1	153906397	.	A	G	1149.2	PASS	AC=1;AF=0.676;AN=2;DP=2049;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:696,0,781:10,20,11,19
chr1	153907278	.	CCTGCTGCTG	C,CCTGCTGCTGCTG	4841.32	PASS	AC=1,0;AF=0.615,0.019;AN=2;DP=3986;set=variant-variant3-variant7-variant9-variant10-variant11-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:118:99:38,19,39,22
chr1	153909069	.	G	C	1837.75	PASS	AC=1;AF=0.64;AN=2;DP=2430;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant9-variant10-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,38:91:99:877,0,1571:31,22,21,17
chr1	153913699	.	T	G	1401.27	PASS	AC=1;AF=0.64;AN=2;DP=1705;MQ=60;set=variant-variant3-variant7-variant9-variant10-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:962,0,668:17,15,23,20
chr1	153913770	.	A	G	1492.64	PASS	AC=1;AF=0.676;AN=2;DP=3012;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,53:89:99:1330,0,765:19,17,29,24
chr1	153915660	.	C	T	1575.34	PASS	AC=1;AF=0.5;AN=2;DP=287;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,77:158:99:1916,0,2106:36,45,32,45
chr1	153917369	.	C	T	710.81	PASS	AC=1;AF=0.64;AN=2;DP=523;MQ=60;set=variant-variant3-variant7-variant9-variant10-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:391,0,296:8,2,8,5
chr1	153920286	.	G	A	682.99	PASS	AC=1;AF=0.64;AN=2;DP=693;MQ=60;set=variant-variant3-variant7-variant9-variant10-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:143,0,477:12,9,5,4
chr1	153920564	.	A	G	1674.6	PASS	AC=1;AF=0.64;AN=2;DP=2108;MQ=60;set=variant-variant3-variant7-variant9-variant10-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,37:99:99:959,0,1505:30,32,24,13
chr1	153926078	.	T	C	1798.63	PASS	AC=1;AF=0.64;AN=2;DP=1850;MQ=60;set=variant-variant3-variant7-variant9-variant10-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:685,0,883:16,20,10,19
chr1	153927052	.	C	G	277.42	PASS	AC=1;AF=0.615;AN=2;DP=474;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant9-variant10-variant11-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:84:84,0,449:6,9,2,3
chr1	153932212	.	G	C	2171.45	PASS	AC=1;AF=0.62;AN=2;DP=1544;MQ=60;set=variant-variant3-variant7-variant9-variant10-variant11-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,31:54:99:740,0,604:12,11,19,12
chr1	153932470	.	AG	A	801.43	PASS	AC=1;AF=0.5;AN=2;DP=146;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,37:71:99:1262,0,1146:15,19,20,17
chr1	153933398	.	C	G	631.52	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=6.901;FractionInformativeReads=1;MQ=60;MQRankSum=-1.61;QD=14.03;ReadPosRankSum=-0.035;SOR=0.156;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:660,0,605:4,14,12,15
chr1	153940144	.	GA	G	249.81	PASS	AC=1;AF=0.683;AN=2;DP=516;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:42:71,0,42:1,1,2,1
chr1	153940739	.	A	C	1124.1	PASS	AC=1;AF=0.672;AN=2;DP=1028;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:359,0,251:5,5,5,7
chr1	153941197	.	G	C	1250.55	PASS	AC=1;AF=0.5;AN=2;DP=232;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,63:123:99:1700,0,1598:26,34,30,33
chr1	153941602	.	G	A	2196.1	PASS	AC=1;AF=0.5;AN=2;DP=272;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,56:122:99:1517,0,1742:30,36,36,20
chr1	153946863	.	G	C	1374.53	PASS	AC=1;AF=0.5;AN=2;DP=191;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,48:80:99:1178,0,749:13,19,22,26
chr1	153947299	.	A	C	796.21	PASS	AC=1;AF=0.5;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,32:63:99:837,0,809:12,19,12,20
chr1	153954674	.	T	C	2210.62	PASS	AC=1;AF=0.667;AN=2;DP=2250;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:509,0,653:13,14,10,14
chr1	153954778	.	AACACAC	AACAC,AAC,AACACACAC,A	34.33	PASS	AC=0,0,0,1;AF=0.339,0.089,0.089,0.036;AN=2;DP=909;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-filterInvariant18-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant31-variant33-filterInvariant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/4:27:99:11,4,9,3
chr1	154061855	.	T	G	2099.84	PASS	AC=2;AF=1;AN=2;DP=2668;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1436,146,0:0,0,30,19
chr1	154076366	.	T	C	256.24	PASS	AC=2;AF=0.741;AN=2;DP=266;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant20-variant21-variant23-variant24-variant25-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:348,27,0:0,0,8,1
chr1	154090127	.	T	C	724.78	PASS	AC=1;AF=0.5;AN=2;DP=107;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,20:52:99:559,0,1051:26,6,16,4
chr1	154108387	.	G	A	1800.65	PASS	AC=2;AF=1;AN=2;DP=2519;FS=0;MQ=60;MQRankSum=1.209;ReadPosRankSum=1.536;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1597,147,0:0,0,18,31
chr1	154112167	.	A	C	531.76	PASS	AC=1;AF=0.713;AN=2;DP=806;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,18:21:21:398,0,21:2,1,14,4
chr1	154128664	.	G	A	913.56	PASS	AC=1;AF=0.5;AN=2;DP=99;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:519,0,558:13,3,13,5
chr1	154141908	.	A	G	2065.56	PASS	AC=1;AF=0.708;AN=2;DP=3146;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,48:95:99:1208,0,1242:17,30,16,32
chr1	154192458	.	G	GT	121.91	PASS	AC=1;AF=0.5;AN=2;DP=72;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:549,0,740:5,8,4,14
chr1	154192463	.	G	T	759.27	PASS	AC=1;AF=0.5;AN=2;DP=68;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:595,0,740:5,8,3,13
chr1	154199543	.	T	C	767.12	PASS	AC=1;AF=0.989;AN=2;DP=897;MQRankSum=-0.106;ReadPosRankSum=-0.951;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:265,0,339:9,2,7,3
chr1	154231529	.	T	C	1561.15	PASS	AC=1;AF=0.5;AN=2;DP=105;FS=2.575;FractionInformativeReads=1;MQ=60;MQRankSum=-0.918;QD=14.87;ReadPosRankSum=0.854;SOR=1.015;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,58:105:99:1589,0,1163:22,25,23,35
chr1	154243115	.	C	T	841.83	PASS	AC=1;AF=0.625;AN=2;DP=1851;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:903,0,1009:19,19,19,17
chr1	154245512	.	A	G	103.72	PASS	AC=1;AF=0.63;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:155,0,400:4,7,2,4
chr1	154245626	.	TAA	TA,T	98.55	PASS	AC=1,0;AF=0.411,0.089;AN=2;DP=1006;set=variant-variant2-variant3-filterInvariant5-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant26-variant27-variant29-filterInvariant31-variant32-variant33-filterInvariant35-variant36-variant37-variant39-variant40-variant41	GT:DP:GQ:SB	0/1:32:99:13,3,12,4
chr1	154305010	.	A	G	341.9	PASS	AC=2;AF=0.909;AN=2;DP=913;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:667,63,0:0,0,15,6
chr1	154310048	.	C	G	5489.79	PASS	AC=2;AF=0.65;AN=2;DP=4995;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5856,525,0:0,0,87,88
chr1	154313232	.	T	C	329.22	PASS	AC=2;AF=0.75;AN=2;DP=686;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:691,60,0:0,0,14,6
chr1	154317153	.	C	T	3192.72	PASS	AC=2;AF=0.633;AN=2;DP=4556;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4178,395,0:0,0,67,65
chr1	154317418	.	T	C	1666.56	PASS	AC=2;AF=0.633;AN=2;DP=1651;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2034,161,0:0,0,27,27
chr1	154319349	.	T	TTTTA,TTTTATTTA	275.96	PASS	AC=2,0;AF=0.636,0.045;AN=2;DP=575;MQ=60;set=variant-variant2-variant5-variant8-variant9-variant10-variant13-filterInvariant14-variant19-variant21-variant24-variant25-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:5:14:0,0,0,5
chr1	154321072	.	A	G	1098.35	PASS	AC=2;AF=0.977;AN=2;DP=2379;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1473,129,0:0,0,17,26
chr1	154323548	.	AT	A	39.42	PASS	AC=2;AF=0.735;AN=2;DP=132;MQ=60;set=variant4-variant8-variant9-variant10-variant13-variant19-variant21-variant22-variant23-variant24-variant29-variant32-variant35-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:153,15,0:0,0,2,3
chr1	154377569	.	C	T	675.91	PASS	AC=2;AF=0.989;AN=2;DP=1396;MQ=60;MQRankSum=0.217;ReadPosRankSum=-1.463;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1427,129,0:0,0,30,13
chr1	154401972	.	T	C	813.15	PASS	AC=1;AF=0.662;AN=2;DP=3129;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,32:80:99:869,0,1345:13,35,10,22
chr1	154407419	.	A	C	587.96	PASS	AC=1;AF=0.629;AN=2;DP=598;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,18:22:99:596,0,117:3,1,12,6
chr1	154407713	.	T	C	627.89	PASS	AC=1;AF=0.638;AN=2;DP=1480;MQ=60;set=variant3-variant4-variant5-variant6-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,15:44:99:387,0,770:9,20,3,12
chr1	154408340	.	T	C	241.58	PASS	AC=1;AF=0.676;AN=2;DP=1066;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,6:20:99:162,0,377:8,6,5,1
chr1	154409893	.	A	AT	378.81	PASS	AC=1;AF=0.621;AN=2;DP=989;MQ=60;set=variant3-variant4-variant5-variant6-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-filterInvariant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:197,0,221:5,6,8,2
chr1	154420402	.	G	C	46.72	PASS	AC=1;AF=0.641;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,231:5,1,4,0
chr1	154422580	.	CTG	CTGTGTGTGTGTGTGTG,CTGTGTG,CTGTGTGTGTG,CTGTGTGTGTGTG,C,CTGTGTGTGTGTGTG,CTGTGTGTG,CTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTG	114.07	PASS	AC=0,0,0,0,1,0,0,0,1;AF=0.071,0.048,0.167,0.095,0.071,0.048,0.167,0.095,0.024;AN=2;DP=354;set=variant3-variant5-variant6-variant7-variant8-variant15-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant29-variant30-variant32-variant35-variant36-variant38-variant41-variant43	GT:DP:GQ:SB	5/9:12:99:0,0,1,11
chr1	154426970	.	A	C	1369.24	PASS	AC=1;AF=0.638;AN=2;DP=2474;MQ=60;set=variant3-variant4-variant5-variant6-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,32:72:99:803,0,1001:24,16,18,14
chr1	154437896	.	T	C	3057	PASS	AC=1;AF=0.866;AN=2;DP=4292;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,51:118:99:1283,0,1593:34,33,22,29
chr1	154438084	.	C	T	1590.82	PASS	AC=1;AF=0.866;AN=2;DP=2201;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,34:61:99:832,0,716:11,16,16,18
chr1	154438880	.	T	C	640.01	PASS	AC=1;AF=0.854;AN=2;DP=1014;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:442,0,477:6,11,5,10
chr1	154439865	.	T	A	728.71	PASS	AC=1;AF=0.866;AN=2;DP=1646;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:301,0,384:6,7,4,7
chr1	154441856	.	GT	G	3695.96	PASS	AC=1;AF=0.75;AN=2;DP=12931;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,165:290:99:4078,0,2724:54,71,69,96
chr1	154442960	.	G	A	767.61	PASS	AC=1;AF=0.744;AN=2;DP=2908;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:705,0,1018:10,26,7,19
chr1	154452100	.	A	G	5325.8	PASS	AC=1;AF=0.966;AN=2;DP=7087;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:80,70:150:99:1822,0,2107:48,32,40,30
chr1	154452218	.	C	T	8843.69	PASS	AC=1;AF=0.955;AN=2;DP=11206;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:154,132:286:99:3012,0,3894:84,70,71,61
chr1	154454674	.	C	G	320.92	PASS	AC=1;AF=0.965;AN=2;DP=328;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:64:247,0,64:2,0,5,2
chr1	154455949	.	T	C	803.93	PASS	AC=1;AF=0.744;AN=2;DP=2519;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:829,0,840:16,19,14,19
chr1	154457855	.	A	C	932.26	PASS	AC=1;AF=0.864;AN=2;DP=1621;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:27,15:42:99:381,0,707:14,13,7,8
chr1	154459197	.	C	G	1277.86	PASS	AC=1;AF=0.966;AN=2;DP=3233;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,52:88:99:1223,0,888:18,18,23,29
chr1	154473726	.	G	A	1298.79	PASS	AC=1;AF=0.955;AN=2;DP=1413;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:211,0,282:7,3,6,2
chr1	154474131	.	C	G	3252.7	PASS	AC=1;AF=0.864;AN=2;DP=6314;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:61,82:143:99:2244,0,1490:24,37,39,43
chr1	154474557	.	T	C	1994.23	PASS	AC=1;AF=0.864;AN=2;DP=2771;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:742,0,1034:17,24,13,20
chr1	154474875	.	G	A	1081.84	PASS	AC=1;AF=0.744;AN=2;DP=2722;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:1078,0,1221:13,14,15,17
chr1	154474900	.	G	A	1092.3	PASS	AC=1;AF=0.744;AN=2;DP=2607;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:937,0,1420:16,18,10,15
chr1	154475330	.	T	A	4216.11	PASS	AC=1;AF=0.732;AN=2;DP=7962;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,92:205:99:3465,0,5609:55,58,42,50
chr1	154475331	.	C	A	4216.09	PASS	AC=1;AF=0.732;AN=2;DP=7932;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,92:202:99:3465,0,5609:54,56,42,50
chr1	154479657	.	C	CAT	2842.87	PASS	AC=1;AF=0.955;AN=2;DP=2202;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:1079,0,757:10,8,17,10
chr1	154479670	.	C	T	1062.85	PASS	AC=1;AF=0.744;AN=2;DP=2341;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,32:54:99:930,0,580:13,9,17,15
chr1	154492673	.	G	A	646.09	PASS	AC=1;AF=0.5;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:930,0,702:19,5,24,4
chr1	154492702	.	G	A	758.62	PASS	AC=1;AF=0.744;AN=2;DP=3311;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,48:93:99:1205,0,1284:33,12,33,15
chr1	154493721	.	T	C	1370.19	PASS	AC=1;AF=0.955;AN=2;DP=1761;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:369,0,373:9,8,9,6
chr1	154514331	.	C	A	279.03	PASS	AC=1;AF=0.732;AN=2;DP=1085;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:256,0,315:8,4,7,3
chr1	154516477	.	G	A	4488.85	PASS	AC=1;AF=0.609;AN=2;DP=7261;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant12-variant15-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant35-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:154,132:286:99:3193,0,3951:80,74,65,67
chr1	154516571	.	T	C	9055.04	PASS	AC=1;AF=0.955;AN=2;DP=10950;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:126,105:231:99:2633,0,3422:54,72,44,61
chr1	154521641	.	G	A	861.06	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=1.903;FractionInformativeReads=1;MQ=60;MQRankSum=-1.425;QD=11.48;ReadPosRankSum=0.752;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,33:75:99:889,0,1150:23,19,20,13
chr1	154522248	.	A	G	2032.64	PASS	AC=1;AF=0.837;AN=2;DP=2880;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,26:71:99:773,0,1313:17,28,5,21
chr1	154523215	.	C	T	1205.87	PASS	AC=1;AF=0.955;AN=2;DP=1871;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,23:56:99:770,0,1042:27,6,18,5
chr1	154523588	.	T	G	1141.54	PASS	AC=1;AF=0.943;AN=2;DP=1427;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:446,0,712:5,17,3,13
chr1	154524973	.	A	G	2513.9	PASS	AC=1;AF=0.604;AN=2;DP=4312;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant12-variant15-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,97:194:99:2203,0,2197:48,49,46,51
chr1	154528086	.	T	C	3091.54	PASS	AC=1;AF=0.943;AN=2;DP=4090;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:58,66:124:99:1598,0,1465:29,29,33,33
chr1	154540307	.	A	G	673.38	PASS	AC=1;AF=0.5;AN=2;DP=229;FractionInformativeReads=1;MQ=60;set=variant10-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:603,0,379:9,8,12,11
chr1	154540717	.	A	G	1439.18	PASS	AC=1;AF=0.5;AN=2;DP=533;FractionInformativeReads=1;MQ=60;set=variant10-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,82:140:99:2063,0,1475:22,36,34,48
chr1	154542092	.	A	G	1651.28	PASS	AC=1;AF=0.5;AN=2;DP=886;MQ=60;set=variant10-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:111,79:190:99:1861,0,2758:62,49,43,36
chr1	154543506	.	A	G	623.89	PASS	AC=1;AF=0.5;AN=2;DP=123;FractionInformativeReads=1;MQ=60;set=variant10-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:543,0,626:12,12,8,9
chr1	154548721	.	T	C	2091.05	PASS	AC=2;AF=0.826;AN=2;DP=3402;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2295,210,0:0,0,30,40
chr1	154551717	.	C	T	800.85	PASS	AC=1;AF=0.5;AN=2;DP=289;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,31:53:99:731,0,618:13,9,16,15
chr1	154554951	.	A	AGGGGCATG	4821.24	PASS	AC=1;AF=0.943;AN=2;DP=6112;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:66,68:134:99:2594,0,5792:28,38,28,40
chr1	154555492	.	T	C	974.68	PASS	AC=1;AF=0.738;AN=2;DP=1512;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,21:28:99:626,0,182:5,2,12,9
chr1	154555733	.	A	T	1195.78	PASS	AC=1;AF=0.615;AN=2;DP=1748;MQ=60;set=variant3-variant5-variant6-variant9-variant10-variant12-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,33:78:99:797,0,1262:22,23,16,17
chr1	154556266	.	G	A	1350.4	PASS	AC=1;AF=0.738;AN=2;DP=1754;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:383,0,519:12,8,10,6
chr1	154556425	.	G	A	650.58	PASS	AC=1;AF=0.662;AN=2;DP=1822;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:686,0,870:17,14,12,13
chr1	154556663	.	G	A	787.03	PASS	AC=1;AF=0.662;AN=2;DP=2447;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,23:62:99:492,0,1194:13,26,12,11
chr1	154557685	.	C	T	971.02	PASS	AC=1;AF=0.662;AN=2;DP=3616;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,57:105:99:1723,0,1193:29,19,36,21
chr1	154559036	.	G	C	289.98	PASS	AC=1;AF=0.955;AN=2;DP=403;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:114,0,115:1,2,0,3
chr1	154561261	.	G	C	2516.78	PASS	AC=1;AF=0.943;AN=2;DP=2998;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:615,0,909:16,20,10,16
chr1	154562617	.	A	AC,ACC	661.9	PASS	AC=1,0;AF=0.421,0.079;AN=2;DP=1845;MQ=60;set=variant3-variant4-variant7-variant10-variant11-variant15-variant19-variant26-variant27-variant32-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	0/1:79:99:37,24,4,14
chr1	154562625	.	G	C	1374.71	PASS	AC=2;AF=0.875;AN=2;DP=4206;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:3,80:83:99:2346,166,0:2,1,40,40
chr1	154562629	.	C	A	788.7	PASS	AC=1;AF=0.5;AN=2;DP=608;MQ=60;set=variant2-variant6-variant17-variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,39:91:99:701,0,1486:22,30,23,16
chr1	154571174	.	T	TGGA	592.49	PASS	AC=2;AF=0.989;AN=2;DP=604;FS=0;MQ=60;MQRankSum=0.751;ReadPosRankSum=0.751;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:487,33,0:0,0,0,11
chr1	154573967	.	T	C	5124.46	PASS	AC=1;AF=0.726;AN=2;DP=6741;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,76:148:99:1971,0,1902:40,32,34,42
chr1	154574820	.	T	C	2977.94	PASS	AC=2;AF=1;AN=2;DP=5799;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4113,410,0:0,0,65,72
chr1	154575040	.	C	T	3231.03	PASS	AC=2;AF=1;AN=2;DP=5191;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4259,419,0:0,0,69,71
chr1	154580458	.	C	A	1994.47	PASS	AC=1;AF=0.553;AN=2;DP=5011;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant19-variant24-variant33-variant34-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:128,123:251:99:3098,0,2992:60,68,56,67
chr1	154600372	.	A	G	3432.51	PASS	AC=2;AF=1;AN=2;DP=5735;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3480,347,0:0,0,61,55
chr1	154600401	.	A	C	73.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3833;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:75,24:99:99:241,0,1599:10,65,20,4
chr1	154679901	.	CT	CTT,C	109.63	PASS	AC=1,0;AF=0.611,0.037;AN=2;DP=318;set=variant2-variant3-variant4-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant44	GT:DP:GQ:SB	0/1:14:42:3,1,6,4
chr1	154744185	.	T	G	323.84	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=1.333;FractionInformativeReads=1;MQ=60;MQRankSum=1.034;QD=8.1;ReadPosRankSum=2.905;SOR=0.467;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,15:40:99:352,0,764:18,7,10,5
chr1	154832290	.	C	T	2147.61	PASS	AC=2;AF=0.607;AN=2;DP=2423;MQ=60;set=variant4-variant7-variant11-variant17-variant19-variant22-variant32-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:6398,599,0:0,0,83,117
chr1	154832322	.	A	C	5906.09	PASS	AC=2;AF=0.942;AN=2;DP=6036;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5378,510,0:0,0,69,101
chr1	154842199	.	GGCTGCTGCT	GGCTGCTGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCTGCTGCT,GGCTGCT,G,GGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCT,GGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT	2072.81	PASS	AC=0,1,0,1,0,0,0,0,0;AF=0.182,0.091,0.045,0.386,0.102,0.011,0.034,0.091,0.011;AN=2;DP=4436;set=Intersection	GT:DP:GQ:SB	4/2:27:99:0,0,8,19
chr1	154897561	.	A	C	347.17	PASS	AC=1;AF=0.5;AN=2;DP=1602;set=filterInvariant2-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant15-filterInvariant16-filterInvariant21-filterInvariant22-variant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant34-filterInvariant36-variant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:31,19:50:99:616,0,2512:5,26,19,0
chr1	154897567	.	A	C	526.14	PASS	AC=1;AF=0.5;AN=2;DP=1855;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-filterInvariant34-filterInvariant36-variant37-variant38-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:42,18:60:99:590,0,2964:13,29,18,0
chr1	154897570	.	T	C	520.12	PASS	AC=1;AF=0.5;AN=2;DP=1810;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant11-filterInvariant12-variant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant21-filterInvariant22-variant23-filterInvariant25-filterInvariant26-variant27-filterInvariant28-variant29-filterInvariant30-filterInvariant34-filterInvariant36-variant37-filterInvariant38-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:42,17:59:99:572,0,2913:13,29,17,0
chr1	154917701	.	A	G	870.51	PASS	AC=2;AF=0.92;AN=2;DP=2693;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,80:81:99:2499,201,0:1,0,28,52
chr1	154988666	.	C	T	831.66	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=4.729;FractionInformativeReads=1;MQ=60;MQRankSum=1.251;QD=9.14;ReadPosRankSum=-3.312;SOR=1.364;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,32:91:99:860,0,1702:39,20,25,7
chr1	154989823	.	T	TGGGGGCAGTAGAGGGGGCAGTAGA,TGGGGGCAGTAGA,TGGGGGCAGTAGAGGGGGCAGTAGAGGGGGCAGTAGAGGGGCCCCGGCAGTAGA	958.78	PASS	AC=1,0,0;AF=0.438,0.063,0.063;AN=2;DP=987;set=variant5-variant8-variant14-variant15-variant16-variant20-variant21-variant26-variant28-variant30-variant31-variant32-variant36-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:62:99:12,24,11,15
chr1	155003992	.	C	T	61.03	PASS	AC=1;AF=0.5;AN=2;DP=209;MQ=60;set=variant15-variant17-variant22-variant23-variant25-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:360,0,1845:5,10,12,0
chr1	155003995	.	A	C	46.08	PASS	AC=1;AF=0.5;AN=2;DP=814;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-filterInvariant15-variant17-variant19-variant21-variant22-variant25-variant26-variant27-variant28-filterInvariant29-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,12:34:99:429,0,1151:11,11,12,0
chr1	155004000	.	A	C	71.65	PASS	AC=1;AF=0.5;AN=2;DP=987;set=variant2-filterInvariant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant17-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant33-variant34-variant35-filterInvariant36-variant38-variant39-variant40-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,12:41:99:418,0,1231:14,15,12,0
chr1	155004005	.	A	C	41.99	PASS	AC=1;AF=0.5;AN=2;DP=1119;set=filterInvariant2-filterInvariant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant17-variant19-variant21-filterInvariant22-variant23-variant26-variant28-variant29-variant33-variant34-variant35-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,12:45:99:306,0,2910:16,17,12,0
chr1	155004009	.	CACATCGGCT	C	233.11	PASS	AC=1;AF=0.5;AN=2;DP=323;set=variant7-variant8-variant17-variant23-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,12:76:99:216,0,4120:38,26,12,0
chr1	155004021	.	T	C	236.73	PASS	AC=1;AF=0.5;AN=2;DP=329;set=variant7-variant8-variant17-variant23-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,9:79:99:208,0,4029:41,29,9,0
chr1	155006450	.	C	A	842.49	PASS	AC=1;AF=0.563;AN=2;DP=778;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant16-variant20-variant21-variant26-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:894,0,1516:13,14,14,10
chr1	155006451	.	C	G	842.49	PASS	AC=1;AF=0.563;AN=2;DP=787;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant16-variant20-variant21-variant26-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,24:52:99:894,0,1516:14,14,14,10
chr1	155021867	.	T	C	733	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=2.3;FractionInformativeReads=1;MQ=60;MQRankSum=1.338;QD=12.22;ReadPosRankSum=-0.51;SOR=0.366;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:761,0,777:9,21,12,18
chr1	155023375	.	C	G	4162.95	PASS	AC=1;AF=0.5;AN=2;DP=358;FS=1.726;FractionInformativeReads=1;MQ=60;MQRankSum=2.457;QD=11.63;ReadPosRankSum=0.509;SOR=0.794;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:183,175:358:99:4191,0,4533:86,97,78,97
chr1	155023998	.	G	T	1217.33	PASS	AC=1;AF=0.5;AN=2;DP=131;FS=4.177;FractionInformativeReads=1;MQ=60;MQRankSum=-0.095;QD=9.29;ReadPosRankSum=-1.751;SOR=0.747;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,59:131:99:1246,0,1876:39,33,27,32
chr1	155026114	.	C	T	251.59	PASS	AC=2;AF=0.718;AN=2;DP=1203;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1356,120,0:0,0,15,25
chr1	155026871	.	G	T	601.01	PASS	AC=1;AF=0.5;AN=2;DP=1039;MQ=60;set=variant-variant4-variant7-variant9-variant20-variant21-variant22-variant27-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,40:87:99:1067,0,1246:16,31,15,25
chr1	155026942	.	A	C	1449.58	PASS	AC=2;AF=0.86;AN=2;DP=3265;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2524,237,0:0,0,39,40
chr1	155028522	.	G	A	1490.7	PASS	AC=1;AF=0.641;AN=2;DP=6519;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant22-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,109:225:99:2562,0,3127:62,54,50,59
chr1	155030557	.	A	C	3883.48	PASS	AC=1;AF=0.625;AN=2;DP=12397;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant22-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:223,191:414:99:4951,0,5550:101,122,84,107
chr1	155033317	.	T	C	2836.76	PASS	AC=2;AF=0.718;AN=2;DP=3644;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3022,270,0:0,0,33,57
chr1	155057467	.	A	G	572.66	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.3;QD=13.97;ReadPosRankSum=1.317;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:601,0,567:17,4,17,3
chr1	155057499	.	A	G,C	741.62	PASS	AC=1,0;AF=0.611,0.042;AN=2;DP=2474;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:61:99:26,8,22,5
chr1	155057837	.	T	G	2209.23	PASS	AC=1;AF=0.5;AN=2;DP=217;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.118;QD=10.18;ReadPosRankSum=0.76;SOR=0.662;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:123,94:217:99:2237,0,2941:54,69,42,52
chr1	155058584	.	A	C	40.81	PASS	AC=1;AF=0.5;AN=2;DP=245;set=filterInvariant4-filterInvariant5-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,16:67:99:246,0,815:18,33,15,1
chr1	155058588	.	G	C	53.39	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=63;FS=30.366;FractionInformativeReads=0.984;MQ=59.94;MQRankSum=-0.955;QD=0.85;ReadPosRankSum=-1.858;SOR=4.399;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:54,8:62:82:82,0,3203:20,34,8,0
chr1	155058590	.	A	C	55	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=64;FS=28.448;FractionInformativeReads=1;MQ=59.94;MQRankSum=-0.817;QD=0.86;ReadPosRankSum=-1.57;SOR=4.164;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:57,7:64:83:83,0,3286:20,37,7,0
chr1	155058595	.	A	C	32.94	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=70;FS=26.589;FractionInformativeReads=1;MQ=59.94;MQRankSum=-0.489;QD=0.47;ReadPosRankSum=-2.31;SOR=4.165;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:63,7:70:61:61,0,3476:24,39,7,0
chr1	155058816	.	T	C	1445.34	PASS	AC=1;AF=0.5;AN=2;DP=527;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant28-variant29-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,39:91:99:1420,0,5424:32,20,20,19
chr1	155058820	.	T	TGCTGCC	1568.87	PASS	AC=1;AF=0.5;AN=2;DP=543;MQ=60;set=variant11-variant13-variant28-variant29-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,40:94:99:1602,0,5420:34,20,21,19
chr1	155059035	.	T	TG	2251.14	PASS	AC=1;AF=0.5;AN=2;DP=1643;MQ=60;set=variant11-variant13-variant28-variant29-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:139,103:242:99:2245,0,3423:56,83,40,63
chr1	155059851	.	A	G	624.07	PASS	AC=1;AF=0.633;AN=2;DP=2299;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,35:90:99:992,0,1255:29,26,15,20
chr1	155099947	.	A	G	423.12	PASS	AC=1;AF=0.5;AN=2;DP=228;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant28-variant29-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:413,0,260:7,4,10,3
chr1	155099963	.	T	C	600.43	PASS	AC=1;AF=0.5;AN=2;DP=273;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant28-variant29-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:464,0,282:7,4,11,4
chr1	155100265	.	A	G	543.4	PASS	AC=2;AF=0.607;AN=2;DP=776;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-filterInvariant33-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1346,119,0:0,0,24,16
chr1	155106550	.	A	G	748.79	PASS	AC=1;AF=0.58;AN=2;DP=2937;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,49:101:99:1301,0,1401:24,28,33,16
chr1	155106697	.	G	A	1219.94	PASS	AC=1;AF=0.58;AN=2;DP=2680;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,61:102:99:1539,0,1070:24,17,27,34
chr1	155108287	.	G	A	1312.9	PASS	AC=1;AF=0.58;AN=2;DP=2383;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,55:94:99:1556,0,1142:23,16,38,17
chr1	155108663	.	A	AG	437.18	PASS	AC=2;AF=1;AN=2;DP=926;FS=0;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:65:750,65,0:0,0,21,3
chr1	155113104	.	G	T	619.66	PASS	AC=1;AF=0.565;AN=2;DP=1403;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant32-variant33-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:875,0,1045:7,26,9,25
chr1	155142210	.	A	G	1287.36	PASS	AC=2;AF=0.625;AN=2;DP=3067;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3622,332,0:0,0,47,64
chr1	155142229	.	G	A	1217.37	PASS	AC=2;AF=0.625;AN=2;DP=3076;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3554,323,0:0,0,49,59
chr1	155148781	.	G	A	277.04	PASS	AC=1;AF=0.571;AN=2;DP=728;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant28-variant30-variant32-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:679,0,600:4,17,7,18
chr1	155149718	.	G	A	2247.16	PASS	AC=2;AF=0.591;AN=2;DP=3800;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant28-variant30-variant32-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4131,397,0:0,0,52,81
chr1	155154491	.	C	T	2179.32	PASS	AC=1;AF=0.5;AN=2;DP=174;FS=7.532;FractionInformativeReads=1;MQ=60;MQRankSum=1.121;QD=12.52;ReadPosRankSum=-0.598;SOR=0.633;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:86,88:174:99:2208,0,2149:49,37,41,47
chr1	155156306	.	C	T	4013.03	PASS	AC=1;AF=0.5;AN=2;DP=570;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:119,139:258:99:3659,0,3013:52,67,66,73
chr1	155162067	.	C	T	3459.22	PASS	AC=2;AF=0.661;AN=2;DP=3959;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4751,446,0:0,0,72,77
chr1	155167451	.	C	G	395.19	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=92;FS=73.196;FractionInformativeReads=1;MQ=60;MQRankSum=0.157;QD=4.3;ReadPosRankSum=-4.342;SOR=5.13;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:80,12:92:99:423,0,15335:65,15,0,12
chr1	155167452	.	T	G	573.73	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=198;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:78,20:98:99:423,0,15335:65,13,0,20
chr1	155167457	.	T	G	39.95	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=390;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:70,31:101:99:441,0,14496:60,10,0,31
chr1	155172379	.	G	A	703.81	PASS	AC=2;AF=0.661;AN=2;DP=699;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:50:561,50,0:0,0,11,6
chr1	155176247	.	G	A	978.04	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=0.851;FractionInformativeReads=0.988;MQ=60;MQRankSum=0.398;QD=12.23;ReadPosRankSum=-2.687;SOR=0.801;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,37:79:99:1006,0,1047:17,25,14,23
chr1	155178782	.	A	T	1325.64	PASS	AC=2;AF=0.722;AN=2;DP=4062;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3244,321,0:0,0,45,63
chr1	155181843	.	G	T	877.97	PASS	AC=2;AF=0.661;AN=2;DP=1140;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1460,123,0:0,0,32,9
chr1	155182164	.	C	T	6099.75	PASS	AC=2;AF=0.661;AN=2;DP=7509;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,252:252:99:7630,754,0:0,0,134,118
chr1	155184975	.	A	G	1998.93	PASS	AC=2;AF=0.736;AN=2;DP=8584;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,248:248:99:7533,742,0:0,0,107,141
chr1	155184987	.	G	A	2753.56	PASS	AC=1;AF=0.5;AN=2;DP=225;FS=7.537;FractionInformativeReads=1;MQ=55.59;MQRankSum=0.544;QD=12.24;ReadPosRankSum=-0.05;SOR=0.382;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:112,113:225:99:2782,0,2952:41,71,52,61
chr1	155186729	.	T	C	3823.01	PASS	AC=2;AF=0.661;AN=2;DP=4642;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4427,438,0:0,0,61,85
chr1	155186742	.	G	A	3452.05	PASS	AC=1;AF=0.571;AN=2;DP=3662;set=variant2-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,66:125:99:1622,0,1481:22,37,26,40
chr1	155194980	.	T	C	373.66	PASS	AC=2;AF=0.712;AN=2;DP=225;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant28-variant29-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,1,3
chr1	155202689	.	A	C	1031.05	PASS	AC=1;AF=0.579;AN=2;DP=2339;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant24-variant26-variant28-variant30-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,44:103:99:1135,0,1614:37,22,25,19
chr1	155203060	.	G	A	1479.86	PASS	AC=1;AF=0.575;AN=2;DP=2804;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant24-variant26-variant28-variant30-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,71:133:99:1684,0,1377:29,33,32,39
chr1	155205669	.	G	T	4277.23	PASS	AC=2;AF=0.989;AN=2;DP=9858;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,209:210:99:6451,615,0:1,0,78,131
chr1	155206168	.	C	T	1283.25	PASS	AC=1;AF=0.5;AN=2;DP=113;FS=2.506;FractionInformativeReads=1;MQ=60;MQRankSum=-0.539;QD=11.36;ReadPosRankSum=0.399;SOR=0.971;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,47:113:99:1311,0,1966:28,38,17,30
chr1	155206341	.	T	G	1220.8	PASS	AC=1;AF=0.579;AN=2;DP=1669;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant24-variant26-variant28-variant30-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,53:105:99:1169,0,1255:18,34,23,30
chr1	155209360	.	C	T	61.21	PASS	AC=1;AF=0.571;AN=2;DP=435;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant10-variant11-filterInvariant12-variant13-variant17-variant18-variant20-variant22-variant24-variant26-variant28-variant30-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:456,0,678:17,2,13,1
chr1	155214473	.	A	G	308.44	PASS	AC=1;AF=0.556;AN=2;DP=576;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant18-variant20-variant22-variant24-variant26-variant28-variant30-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:463,0,352:5,9,9,11
chr1	155217435	.	AGG	A	1462.82	PASS	AC=1;AF=0.556;AN=2;DP=1241;MQ=60;set=variant2-variant5-variant10-variant11-variant12-variant13-variant18-variant20-variant22-variant24-variant26-variant28-variant30-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,37:79:99:1407,0,3230:20,22,14,23
chr1	155217438	.	A	ATT	1462.82	PASS	AC=1;AF=0.556;AN=2;DP=1222;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant10-variant11-variant12-variant13-variant18-variant20-variant22-variant24-variant26-variant28-variant30-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:1407,0,3230:19,22,14,23
chr1	155218168	.	T	C	1677.74	PASS	AC=1;AF=0.556;AN=2;DP=2396;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant10-variant11-variant12-variant13-variant18-variant20-variant22-variant24-variant26-variant28-variant30-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,56:130:99:1400,0,2115:34,40,25,31
chr1	155221837	.	C	A	655.63	PASS	AC=1;AF=0.559;AN=2;DP=662;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant10-variant11-variant12-variant13-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:229,0,376:5,8,4,5
chr1	155224068	.	A	G	1939.83	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.459;QD=17.8;ReadPosRankSum=2.733;SOR=0.726;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,59:109:99:1968,0,1500:25,25,29,30
chr1	155224091	.	C	A	900.88	PASS	AC=1;AF=0.559;AN=2;DP=1437;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant10-variant11-variant12-variant13-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,67:109:99:1981,0,1297:22,20,32,35
chr1	155224301	.	C	A	1756.35	PASS	AC=1;AF=0.559;AN=2;DP=1908;MQ=60;set=variant2-variant5-variant10-variant11-variant12-variant13-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,51:109:99:1310,0,1665:25,33,17,34
chr1	155230131	.	C	T	1179.81	PASS	AC=1;AF=0.583;AN=2;DP=2247;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,52:112:99:1230,0,1486:38,22,33,19
chr1	155230705	.	GT	G	233.66	PASS	AC=1;AF=0.588;AN=2;DP=461;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:339,0,214:2,9,1,14
chr1	155231545	.	T	G	766.64	PASS	AC=1;AF=0.575;AN=2;DP=1240;set=variant2-variant5-variant7-variant10-variant11-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,21:59:99:614,0,1090:10,28,5,16
chr1	155232074	.	C	T	936.15	PASS	AC=1;AF=0.583;AN=2;DP=2075;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:81,54:135:99:1249,0,2113:41,40,30,24
chr1	155236833	.	G	A	410.85	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:253,0,548:1,13,1,7
chr1	155239624	.	G	A	1246.85	PASS	AC=1;AF=0.605;AN=2;DP=1822;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,46:103:99:1092,0,1593:16,41,16,30
chr1	155254476	.	C	T	1850.24	PASS	AC=1;AF=0.5;AN=2;DP=171;FS=1.906;FractionInformativeReads=1;MQ=60;MQRankSum=-1.307;QD=10.82;ReadPosRankSum=0.113;SOR=0.889;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:93,78:171:99:1878,0,2413:47,46,43,35
chr1	155255610	.	G	T	1508.32	PASS	AC=1;AF=0.5;AN=2;DP=260;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,67:126:99:1646,0,1492:26,33,36,31
chr1	155255837	.	T	C	623.3	PASS	AC=1;AF=0.605;AN=2;DP=714;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,23:43:99:755,0,561:5,15,3,20
chr1	155257492	.	C	G	755.97	PASS	AC=1;AF=0.605;AN=2;DP=1358;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,44:84:99:1155,0,1025:26,14,25,19
chr1	155258752	.	G	A	1924.26	PASS	AC=1;AF=0.614;AN=2;DP=2642;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,73:105:99:2917,0,1863:15,17,36,37
chr1	155258756	.	C	T	1896.68	PASS	AC=1;AF=0.605;AN=2;DP=2274;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,76:107:99:2985,0,1813:14,17,36,40
chr1	155259323	.	C	T	614.76	PASS	AC=1;AF=0.605;AN=2;DP=884;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:756,0,517:8,12,10,17
chr1	155260096	.	G	A	881.57	PASS	AC=1;AF=0.605;AN=2;DP=985;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,11:33:99:204,0,551:8,14,6,5
chr1	155260350	.	A	G	1028.15	PASS	AC=1;AF=0.605;AN=2;DP=1525;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,52:113:99:1348,0,1368:33,28,30,22
chr1	155260383	.	G	T	1276.01	PASS	AC=1;AF=0.605;AN=2;DP=1890;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,63:137:99:1433,0,1776:36,38,32,31
chr1	155265177	.	A	G	1853.59	PASS	AC=1;AF=0.619;AN=2;DP=2995;MQ=60;set=variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,66:146:99:1663,0,2057:35,45,28,38
chr1	155269776	.	A	G	471.96	PASS	AC=1;AF=0.625;AN=2;DP=607;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant13-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant34-variant35-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:497,0,457:11,4,13,5
chr1	155280104	.	CT	CTT,C	1069.41	PASS	AC=0,1;AF=0.283,0.217;AN=2;DP=4058;set=variant2-filterInvariant4-variant5-variant7-filterInvariant8-variant10-variant12-variant13-filterInvariant14-variant17-variant18-filterInvariant19-variant20-filterInvariant21-variant22-variant26-filterInvariant27-variant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-variant34-variant35-filterInvariant36-variant37-filterInvariant38-variant41-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:103:99:27,49,7,20
chr1	155287836	.	G	A	1580.18	PASS	AC=1;AF=0.5;AN=2;DP=138;FS=5.196;FractionInformativeReads=1;MQ=60;MQRankSum=-0.524;QD=11.45;ReadPosRankSum=0.746;SOR=1.154;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,71:138:99:1608,0,1584:35,32,44,27
chr1	155294274	.	A	G	3433.09	PASS	AC=2;AF=1;AN=2;DP=4774;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3042,264,0:0,0,32,56
chr1	155294772	.	A	G	2337.36	PASS	AC=2;AF=0.989;AN=2;DP=3207;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2209,189,0:0,0,27,36
chr1	155305549	.	G	GT	1073.15	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=0.912;MQ=60;MQRankSum=1.14;QD=15.78;ReadPosRankSum=1.962;SOR=0.586;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,44:62:99:1110,0,324:10,8,23,21
chr1	155306151	.	T	TACAC	97.61	PASS	AC=2;AF=1;AN=2;DP=213;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,1,2
chr1	155313047	.	T	C	976.84	PASS	AC=2;AF=0.989;AN=2;DP=2047;FS=0;MQ=60;MQRankSum=0.565;ReadPosRankSum=-0.188;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1948,173,0:0,0,41,17
chr1	155330237	.	AT	A,ATT	95.11	PASS	AC=0,1;AF=0.318,0.182;AN=2;DP=704;MQ=60;set=filterInvariant-filterInvariant9-filterInvariant10-variant11-filterInvariant22-filterInvariant28-variant34-filterInvariant38-filterInvariant40-variant41-filterInvariant44	GT:DP:GQ:SB	0/2:44:99:12,18,3,11
chr1	155408635	.	T	C	3821.14	PASS	AC=2;AF=1;AN=2;DP=5505;FS=0;MQ=60;MQRankSum=1.344;ReadPosRankSum=0.439;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3623,324,0:0,0,59,49
chr1	155531805	.	T	A	341.1	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=54.02;MQRankSum=0.035;QD=7.58;ReadPosRankSum=1.332;SOR=0.53;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:369,0,787:19,8,12,6
chr1	155532316	.	T	C	5127.87	PASS	AC=2;AF=1;AN=2;DP=6620;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:6366,427,0:0,0,63,74
chr1	155532325	.	T	C	5261.5	PASS	AC=2;AF=1;AN=2;DP=6654;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:6840,458,0:0,0,69,79
chr1	155532332	.	T	C	5168.26	PASS	AC=2;AF=1;AN=2;DP=6732;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:7041,476,0:0,0,74,77
chr1	155532341	.	T	C	4954.61	PASS	AC=2;AF=1;AN=2;DP=6774;FS=0;MQRankSum=1.407;ReadPosRankSum=1.617;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:6765,463,0:0,0,77,77
chr1	155618415	.	CT	C	6911.09	PASS	AC=2;AF=0.989;AN=2;DP=7735;MQRankSum=-5.776;ReadPosRankSum=1.755;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:6055,529,0:0,0,90,86
chr1	155629964	.	C	T	2684.1	PASS	AC=1;AF=0.5;AN=2;DP=173;FS=3.532;FractionInformativeReads=1;MQ=59.37;MQRankSum=0.348;QD=15.52;ReadPosRankSum=2.444;SOR=0.667;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:74,99:173:99:2712,0,2190:34,40,52,47
chr1	155631307	.	AACACAC	AACAC,AACACACACACACAC,AACACACACACACACAC,AACACACACAC,AAC,AACACACACACAC,A,AACACACACACACACACACACAC,AACACACAC	598.48	PASS	AC=0,0,0,0,1,0,0,0,1;AF=0.324,0.027,0.081,0.081,0.081,0.095,0.041,0.014,0.014;AN=2;DP=1401;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-filterInvariant19-filterInvariant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-filterInvariant38-variant40-variant41-variant44	GT:DP:GQ:SB	5/9:26:84:1,1,3,21
chr1	155657723	.	T	A	593.73	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=56.66;MQRankSum=1.04;QD=14.84;ReadPosRankSum=-2.763;SOR=0.674;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:622,0,431:12,5,16,7
chr1	155658085	.	T	C	2799.86	PASS	AC=1;AF=0.583;AN=2;DP=5826;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant20-variant22-variant26-variant28-variant30-variant32-variant34-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:154,129:283:99:3216,0,3637:80,74,62,67
chr1	155695904	.	CT	C,CTT,CTTT	99.48	PASS	AC=0,1,0;AF=0.25,0.2,0.05;AN=2;DP=443;set=filterInvariant3-filterInvariant19-filterInvariant20-variant21-filterInvariant22-filterInvariant24-filterInvariant29-filterInvariant31-variant41-filterInvariant43	GT:DP:GQ:SB	0/2:17:99:0,8,3,6
chr1	155701652	.	G	GA	271.22	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:308,0,466:13,8,10,5
chr1	155708344	.	G	A	3420.28	PASS	AC=1;AF=0.5;AN=2;DP=558;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:136,141:277:99:3449,0,3466:76,60,80,61
chr1	155716858	.	T	C	30.32	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=125;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:60,8:68:59:59,0,1537:23,37,0,8
chr1	155719111	.	A	C	536.38	PASS	AC=1;AF=0.5;AN=2;DP=967;FractionInformativeReads=1;set=variant5-variant13-variant18-variant20-variant22-variant28-variant32-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,38:88:99:949,0,1187:27,23,23,15
chr1	155735585	.	C	T	2361.77	PASS	AC=1;AF=0.5;AN=2;DP=241;FS=14.609;FractionInformativeReads=1;MQ=51.54;MQRankSum=-1.607;QD=9.8;ReadPosRankSum=0.603;SOR=1.488;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:163,78:241:99:2390,0,4518:72,91,23,55
chr1	155735901	.	C	T	2517.2	PASS	AC=1;AF=0.5;AN=2;DP=177;FS=1.857;FractionInformativeReads=0.994;MQ=60;MQRankSum=0.138;QD=14.22;ReadPosRankSum=1.77;SOR=0.643;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:78,98:176:99:2545,0,2051:37,41,50,48
chr1	155737385	.	C	T	1130.13	PASS	AC=2;AF=0.989;AN=2;DP=1424;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1061,104,0:0,0,21,14
chr1	155737425	.	AACACAC	AAC,AACACACAC,AACAC,A	1391.16	PASS	AC=1,1,0,0;AF=0.628,0.081,0.023,0.023;AN=2;DP=1380;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:37:99:1,2,13,21
chr1	155746340	.	CT	C	932.22	PASS	AC=2;AF=0.966;AN=2;DP=2939;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,40:42:73:1064,73,0:1,1,14,26
chr1	155754117	.	G	A	1149.91	PASS	AC=2;AF=0.966;AN=2;DP=1479;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1354,126,0:0,0,13,29
chr1	155755097	.	G	A	3927.49	PASS	AC=2;AF=0.989;AN=2;DP=5028;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2551,242,0:0,0,40,41
chr1	155783763	.	C	T	627.34	PASS	AC=1;AF=0.943;AN=2;DP=1277;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:270,0,558:4,14,2,7
chr1	155784173	.	C	T	1118.3	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.294;QD=10.26;ReadPosRankSum=1.222;SOR=0.734;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,53:109:99:1147,0,1350:27,29,25,28
chr1	155785578	.	CAACT	C	5632.05	PASS	AC=2;AF=0.966;AN=2;DP=5675;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:5524,370,0:0,0,74,49
chr1	155822971	.	C	T	1019.56	PASS	AC=1;AF=0.744;AN=2;DP=832;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:412,0,322:9,2,10,3
chr1	155823002	.	T	C	1807.63	PASS	AC=2;AF=1;AN=2;DP=1860;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1560,132,0:0,0,33,11
chr1	155829140	.	C	G	2625.84	PASS	AC=2;AF=0.989;AN=2;DP=4456;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2920,291,0:0,0,56,41
chr1	155829360	.	C	A	3678.89	PASS	AC=2;AF=0.989;AN=2;DP=7861;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,218:218:99:6452,649,0:0,0,113,105
chr1	155837865	.	G	C	4099.2	PASS	AC=2;AF=0.989;AN=2;DP=7587;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:5703,565,0:0,0,105,84
chr1	155838267	.	T	C	3496.57	PASS	AC=2;AF=1;AN=2;DP=7452;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:5140,471,0:0,0,89,68
chr1	155850558	.	T	C	872.02	PASS	AC=1;AF=0.756;AN=2;DP=1768;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:496,0,577:3,15,5,13
chr1	155850811	.	G	A	509.68	PASS	AC=1;AF=0.763;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:136,0,155:4,0,4,0
chr1	155852123	.	C	T	3501.29	PASS	AC=1;AF=0.744;AN=2;DP=3040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,42:74:99:1400,0,1012:20,12,28,14
chr1	155868336	.	C	G,A	724.91	PASS	AC=1,0;AF=0.702,0.226;AN=2;DP=694;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:19:99:9,1,9,0
chr1	155868625	.	G	A	3528.57	PASS	AC=1;AF=0.6;AN=2;DP=4491;MQ=60;set=variant2-variant5-variant7-variant8-variant11-variant12-variant13-variant16-variant17-variant20-variant22-variant26-variant28-variant30-variant34-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,99:223:99:2371,0,3502:54,70,45,54
chr1	155868984	.	T	C	3565.33	PASS	AC=2;AF=0.942;AN=2;DP=3596;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2972,264,0:0,0,32,56
chr1	155869435	.	T	TA	5014.3	PASS	AC=1;AF=0.737;AN=2;DP=10002;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,96:206:99:1901,0,2374:42,68,42,54
chr1	155870416	.	G	A	4068.07	PASS	AC=2;AF=0.942;AN=2;DP=4714;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2872,279,0:0,0,47,46
chr1	155880159	.	T	C	411.48	PASS	AC=1;AF=0.6;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant11-variant12-variant13-variant16-variant17-variant20-variant22-variant26-variant28-variant30-variant34-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:376,0,258:7,2,9,4
chr1	155880573	.	C	G	3825.71	PASS	AC=2;AF=0.942;AN=2;DP=7056;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4062,396,0:0,0,64,68
chr1	155880760	.	C	CA	1478.69	PASS	AC=2;AF=0.93;AN=2;DP=2357;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2901,220,0:0,0,23,50
chr1	155884155	.	GA	G	1479.88	PASS	AC=1;AF=0.5;AN=2;DP=137;FS=0.659;FractionInformativeReads=0.934;MQ=60;MQRankSum=-1.099;QD=10.8;ReadPosRankSum=1.223;SOR=0.689;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,70:128:99:1517,0,1201:28,30,36,34
chr1	155891045	.	A	C	1409.45	PASS	AC=1;AF=0.757;AN=2;DP=1337;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:682,0,591:15,6,17,5
chr1	155891857	.	AT	ATT,A,ATTT	87.16	PASS	AC=0,1,0;AF=0.455,0.091,0.023;AN=2;DP=902;set=variant2-filterInvariant5-filterInvariant6-variant7-variant8-variant11-variant12-filterInvariant13-filterInvariant14-variant15-variant16-variant17-variant20-variant22-variant26-variant28-filterInvariant33-variant34-filterInvariant37-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	0/2:25:46:0,6,2,17
chr1	155891877	.	C	CAG	490.13	PASS	AC=2;AF=1;AN=2;DP=955;FS=0;MQRankSum=-1.404;ReadPosRankSum=1.404;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:63:926,63,0:0,0,0,20
chr1	155899020	.	A	T	1701.22	PASS	AC=1;AF=0.75;AN=2;DP=2173;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,33:55:99:700,0,523:13,9,20,13
chr1	155899125	.	C	T	685.19	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.789;QD=8.16;ReadPosRankSum=-1.461;SOR=0.624;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,30:84:99:713,0,1314:26,28,15,15
chr1	155903310	.	T	C	911.08	PASS	AC=2;AF=1;AN=2;DP=1268;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1200,108,0:0,0,26,10
chr1	155903408	.	C	T	2742.04	PASS	AC=1;AF=0.75;AN=2;DP=3241;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,42:102:99:958,0,1472:30,30,24,18
chr1	155904177	.	T	C	7773.81	PASS	AC=2;AF=0.942;AN=2;DP=17083;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,394:394:99:11530,1181,0:0,0,210,184
chr1	155904390	.	C	T	425.95	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=0;FractionInformativeReads=0.973;MQ=60;MQRankSum=0.43;QD=11.51;ReadPosRankSum=1.671;SOR=0.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:454,0,651:3,17,3,13
chr1	155904392	.	G	A	144.21	PASS	AC=2;AF=0.942;AN=2;DP=1254;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1461,111,0:0,0,7,30
chr1	155912481	.	G	T	4011.91	PASS	AC=1;AF=0.5;AN=2;DP=346;FS=1.285;FractionInformativeReads=1;MQ=60;MQRankSum=0.589;QD=11.6;ReadPosRankSum=0.222;SOR=0.607;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:174,172:346:99:4040,0,4319:71,103,74,98
chr1	155912486	.	T	C	10817.5	PASS	AC=2;AF=1;AN=2;DP=13870;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,323:323:99:12266,995,0:0,0,135,188
chr1	155917880	.	T	A	1890.63	PASS	AC=1;AF=0.93;AN=2;DP=6583;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,99:185:99:2553,0,1991:39,47,47,52
chr1	155928232	.	T	C	1685.8	PASS	AC=1;AF=0.93;AN=2;DP=1594;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:392,0,564:6,15,5,9
chr1	155928242	.	C	T	1522.77	PASS	AC=2;AF=0.942;AN=2;DP=1393;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1145,93,0:0,0,10,21
chr1	155931368	.	G	A	558.76	PASS	AC=2;AF=0.763;AN=2;DP=1481;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1241,117,0:0,0,27,12
chr1	155947875	.	A	G	2954.55	PASS	AC=2;AF=0.808;AN=2;DP=5437;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:3919,409,0:0,0,66,71
chr1	155948438	.	C	G	538.43	PASS	AC=1;AF=0.563;AN=2;DP=252;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant18-variant32-variant33-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,31:53:99:865,0,619:5,17,8,23
chr1	155955076	.	A	G	1479.3	PASS	AC=2;AF=1;AN=2;DP=3029;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2308,234,0:0,0,50,28
chr1	155981489	.	C	G	1348.09	PASS	AC=2;AF=0.718;AN=2;DP=2897;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1968,188,0:0,0,42,21
chr1	156011444	.	T	C	4095.02	PASS	AC=2;AF=0.718;AN=2;DP=6475;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5026,494,0:0,0,94,71
chr1	156013676	.	C	T	372.7	PASS	AC=1;AF=0.553;AN=2;DP=1096;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant12-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant32-variant33-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:698,0,831:20,12,17,10
chr1	156025096	.	C	T	794.88	PASS	AC=1;AF=0.528;AN=2;DP=1687;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant12-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant33-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,48:85:99:1146,0,957:26,11,28,20
chr1	156040310	.	A	G	1113.09	PASS	AC=1;AF=0.875;AN=2;DP=1227;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,27:37:99:765,0,255:4,6,10,17
chr1	156044253	.	C	T	168.09	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.109;QD=12.01;ReadPosRankSum=-0.471;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:196,0,190:3,3,4,4
chr1	156044938	.	C	G	601.45	PASS	AC=1;AF=0.583;AN=2;DP=966;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant12-variant15-variant18-variant19-variant21-variant27-variant28-variant32-variant34-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:566,0,645:12,10,15,9
chr1	156045183	.	T	A	348.85	PASS	AC=1;AF=0.559;AN=2;DP=791;MQ=60;set=variant-variant2-variant5-variant6-variant12-variant15-variant18-variant19-variant21-variant27-variant28-variant32-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:590,0,671:16,12,12,11
chr1	156045662	.	A	G	346.87	PASS	AC=2;AF=0.672;AN=2;DP=1956;MQ=60;set=variant-variant2-variant5-variant6-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2777,264,0:0,0,51,37
chr1	156045973	.	C	T	236.99	PASS	AC=1;AF=0.559;AN=2;DP=598;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant12-variant15-variant18-variant19-variant21-variant27-variant28-variant32-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,26:42:99:740,0,408:8,8,12,14
chr1	156052286	.	A	G	1191.31	PASS	AC=2;AF=1;AN=2;DP=1648;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1159,105,0:0,0,26,9
chr1	156096376	.	G	A	568.77	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=1.725;FractionInformativeReads=1;MQ=60;MQRankSum=0.52;QD=16.73;ReadPosRankSum=2.393;SOR=1.42;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:597,0,489:11,4,16,3
chr1	156096417	.	T	G	1003.58	PASS	AC=1;AF=0.5;AN=2;DP=675;MQ=60;set=variant18-variant23-variant26-variant29-variant33-variant34-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:847,0,793:20,9,21,12
chr1	156099669	.	T	G	597.15	PASS	AC=1;AF=0.5;AN=2;DP=373;FractionInformativeReads=1;MQ=60;set=variant18-variant23-variant26-variant29-variant33-variant34-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,25:40:99:559,0,398:5,10,13,12
chr1	156104375	.	G	T	442.13	PASS	AC=1;AF=0.5;AN=2;DP=57;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:499,0,770:2,11,4,9
chr1	156104392	.	C	T	408.02	PASS	AC=1;AF=0.5;AN=2;DP=45;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:454,0,651:2,8,4,8
chr1	156105028	.	T	C	797.56	PASS	AC=1;AF=0.5;AN=2;DP=861;FractionInformativeReads=1;MQ=60;set=variant11-variant18-variant23-variant26-variant29-variant33-variant34-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,49:77:99:1246,0,588:12,16,21,28
chr1	156105609	.	G	T	1076.87	PASS	AC=1;AF=0.5;AN=2;DP=652;FractionInformativeReads=1;MQ=60;set=variant11-variant18-variant23-variant26-variant29-variant33-variant34-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,39:72:99:1079,0,948:24,9,28,11
chr1	156105928	.	G	A	2042.42	PASS	AC=1;AF=0.5;AN=2;DP=1870;MQ=60;set=variant11-variant18-variant23-variant26-variant29-variant33-variant34-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:83,77:160:99:1871,0,2041:34,49,35,42
chr1	156106185	.	T	C	364.3	PASS	AC=1;AF=0.5;AN=2;DP=317;MQ=60;set=variant11-variant18-variant23-variant26-variant29-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:554,0,272:3,8,8,10
chr1	156106369	.	G	A	177.89	PASS	AC=1;AF=0.545;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant11-variant18-variant23-variant26-variant29-variant33-variant34-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:205,0,254:5,2,2,4
chr1	156106863	.	C	T	2209.52	PASS	AC=2;AF=0.55;AN=2;DP=2037;MQ=60;set=variant11-variant18-variant23-variant26-variant29-variant33-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:6341,629,0:0,0,100,111
chr1	156107337	.	G	A	639.9	PASS	AC=1;AF=0.5;AN=2;DP=97;FS=0;FractionInformativeReads=1;MQ=60;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:417,0,671:15,12,9,7
chr1	156108976	.	G	C	799.04	PASS	AC=2;AF=0.55;AN=2;DP=663;FractionInformativeReads=1;MQ=60;set=variant11-variant18-variant23-variant26-variant29-variant33-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2290,207,0:0,0,32,37
chr1	156109094	.	CA	C,CAA	2201.07	PASS	AC=0,1;AF=0.355,0.177;AN=2;DP=6776;set=variant-filterInvariant2-variant3-variant4-variant7-filterInvariant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-variant14-variant16-variant18-filterInvariant19-variant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant29-filterInvariant31-filterInvariant32-variant33-variant34-variant36-filterInvariant37-variant38-variant39-variant41-filterInvariant42	GT:DP:GQ:SB	0/2:173:99:22,11,82,58
chr1	156123230	.	C	G	470.44	PASS	AC=1;AF=0.553;AN=2;DP=778;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant11-variant14-variant16-variant17-variant18-variant23-variant26-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:450,0,512:13,4,11,8
chr1	156131095	.	C	CGGGGCGG	398.53	PASS	AC=2;AF=1;AN=2;DP=62;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.742;ReadPosRankSum=0.742;set=variant2-variant4-variant5-variant10-variant13-variant15-variant17-variant22-variant23-variant27-variant28-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,1:1:9:131,9,0:0,0,1,0
chr1	156132909	.	GCA	G	1839.67	PASS	AC=1;AF=0.571;AN=2;DP=2829;MQ=60;set=variant-variant2-variant5-variant6-variant10-variant13-variant15-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,59:119:99:2297,0,2374:31,29,28,31
chr1	156146218	.	C	T	2292.56	PASS	AC=1;AF=0.684;AN=2;DP=3427;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,44:90:99:1169,0,1100:22,24,24,20
chr1	156147326	.	T	C	1352.98	PASS	AC=1;AF=0.621;AN=2;DP=1749;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:676,0,781:12,15,8,17
chr1	156147558	.	C	T	324.76	PASS	AC=1;AF=0.617;AN=2;DP=338;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:153,0,150:2,4,2,4
chr1	156169610	.	A	G	898.96	PASS	AC=1;AF=0.548;AN=2;DP=3771;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,48:112:99:1276,0,1801:44,20,34,14
chr1	156180847	.	TTGTGTGTGTGTGTGTGTGTG	TTGTGTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTG,T,TTGTGTGTGTGTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG	76.8	PASS	AC=0,0,0,1,0,0,1,0;AF=0.382,0.105,0.039,0.079,0.026,0.013,0.026,0.013;AN=2;DP=1070;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/7:14:99:0,0,10,4
chr1	156181007	.	C	G	411.34	PASS	AC=1;AF=0.548;AN=2;DP=1351;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:664,0,748:17,12,14,14
chr1	156181530	.	A	G	796.51	PASS	AC=1;AF=0.5;AN=2;DP=380;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant11-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,29:60:99:849,0,754:14,17,16,13
chr1	156181770	.	A	G	675.07	PASS	AC=1;AF=0.548;AN=2;DP=2250;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,32:75:99:894,0,1212:22,21,14,18
chr1	156182710	.	T	C	109.13	PASS	AC=1;AF=0.548;AN=2;DP=775;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:367,0,335:8,2,9,2
chr1	156202173	.	A	G	2089.64	PASS	AC=1;AF=0.578;AN=2;DP=5799;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,85:172:99:1984,0,2168:45,42,45,40
chr1	156203399	.	C	G	1059.65	PASS	AC=1;AF=0.5;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant5-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,46:96:99:1225,0,1151:29,21,24,22
chr1	156206158	.	C	T	4099.21	PASS	AC=1;AF=0.5;AN=2;DP=895;MQ=60;set=variant5-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:143,163:306:99:4130,0,3586:69,74,84,79
chr1	156209857	.	C	T	127.4	PASS	AC=1;AF=0.533;AN=2;DP=506;MQ=60;set=variant-variant4-variant5-variant7-variant14-variant19-variant20-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:241,0,564:7,12,3,7
chr1	156213257	.	G	A	582.57	PASS	AC=1;AF=0.756;AN=2;DP=1933;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,25:51:99:761,0,814:12,14,16,9
chr1	156213921	.	C	T	2672.34	PASS	AC=1;AF=0.536;AN=2;DP=3051;MQ=60;set=variant-variant4-variant5-variant7-variant19-variant20-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:128,107:235:99:2717,0,3399:53,75,52,55
chr1	156215899	.	G	A	1085.4	PASS	AC=1;AF=0.595;AN=2;DP=5039;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,67:123:99:1736,0,1483:33,23,36,31
chr1	156219450	.	A	G	511.14	PASS	AC=1;AF=0.595;AN=2;DP=2594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,36:62:99:891,0,577:11,15,17,19
chr1	156220056	.	T	C	2185.13	PASS	AC=1;AF=0.583;AN=2;DP=4998;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,56:125:99:1384,0,1761:48,21,36,20
chr1	156222635	.	A	C	1391.8	PASS	AC=1;AF=0.5;AN=2;DP=119;FS=2.521;FractionInformativeReads=1;MQ=60;MQRankSum=-2.746;QD=11.7;ReadPosRankSum=2.986;SOR=0.989;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,53:119:99:1420,0,1822:42,24,37,16
chr1	156230002	.	G	A	156.08	PASS	AC=1;AF=0.583;AN=2;DP=115;MQ=60;set=variant-variant4-variant5-variant7-variant14-variant19-variant20-variant33-variant35-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:75:115,0,75:2,2,2,2
chr1	156230141	.	T	A	711.28	PASS	AC=1;AF=0.533;AN=2;DP=749;MQ=60;set=variant-variant4-variant5-variant7-variant14-variant19-variant20-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,16:39:99:344,0,504:14,9,10,6
chr1	156230206	.	C	A	718.09	PASS	AC=1;AF=0.533;AN=2;DP=1166;MQ=60;set=variant-variant4-variant5-variant7-variant14-variant19-variant20-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,36:73:99:806,0,1002:23,14,19,17
chr1	156230605	.	C	G	245.12	PASS	AC=1;AF=0.533;AN=2;DP=266;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant14-variant19-variant20-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:279,0,201:3,4,4,7
chr1	156231266	.	G	C	79.7	PASS	AC=1;AF=0.533;AN=2;DP=620;MQ=60;set=variant-variant4-variant5-variant7-variant14-variant19-variant20-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:685,0,727:8,19,11,18
chr1	156233479	.	T	C	121.45	PASS	AC=1;AF=0.533;AN=2;DP=374;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant14-variant19-variant20-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:96:315,0,96:1,3,4,7
chr1	156236592	.	CTT	C,CT	99.73	PASS	AC=0,1;AF=0.019,0.481;AN=2;DP=1252;set=variant-variant2-variant4-variant5-variant7-variant14-filterInvariant17-filterInvariant18-variant19-variant20-filterInvariant22-filterInvariant25-filterInvariant28-filterInvariant29-filterInvariant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/2:25:99:4,10,1,10
chr1	156247907	.	C	T	395.6	PASS	AC=1;AF=0.568;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:665,0,397:1,11,2,17
chr1	156255833	.	G	C	422.99	PASS	AC=2;AF=1;AN=2;DP=1092;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:86:914,86,0:0,0,8,21
chr1	156261491	.	G	C	1027.81	PASS	AC=1;AF=0.542;AN=2;DP=1212;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant14-variant19-variant32-variant33-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,39:81:99:1061,0,1232:17,25,17,22
chr1	156262167	.	AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	AGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGTGT,AGTGT,AGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGTGTGT,A,AGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGT	302.36	PASS	AC=0,0,0,1,0,0,0,0,1,0;AF=0.268,0.22,0.159,0.085,0.012,0.024,0.024,0.024,0.024,0.024;AN=2;DP=1301;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	9/4:13:99:0,0,4,9
chr1	156264138	.	C	T	2730.64	PASS	AC=1;AF=0.5;AN=2;DP=231;FS=1.589;FractionInformativeReads=1;MQ=60;MQRankSum=1.917;QD=11.82;ReadPosRankSum=0.197;SOR=0.806;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:125,106:231:99:2759,0,3377:60,65,48,58
chr1	156278799	.	G	A	566.16	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:458,0,315:8,5,12,6
chr1	156279210	.	T	C	2222.81	PASS	AC=2;AF=1;AN=2;DP=3229;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2753,257,0:0,0,30,56
chr1	156280296	.	GATAA	G	193.45	PASS	AC=1;AF=0.575;AN=2;DP=249;MQ=60;set=variant-variant6-variant11-variant13-variant14-variant15-variant18-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:309,0,324:6,1,8,0
chr1	156282224	.	A	G	66.22	PASS	AC=2;AF=0.865;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:396,30,0:0,0,2,8
chr1	156287360	.	C	T	775.81	PASS	AC=1;AF=0.565;AN=2;DP=1411;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,29:62:99:684,0,771:14,19,10,19
chr1	156287403	.	T	C	683.2	PASS	AC=1;AF=0.574;AN=2;DP=1362;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:553,0,415:8,12,8,14
chr1	156288906	.	G	GT	100.92	PASS	AC=1;AF=0.524;AN=2;DP=655;set=variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant16-variant17-filterInvariant19-variant20-variant22-variant24-variant25-variant27-variant30-variant35-filterInvariant37-filterInvariant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:86:86,0,303:1,16,3,4
chr1	156304782	.	A	G	160.08	PASS	AC=1;AF=0.574;AN=2;DP=665;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,20:28:99:489,0,198:2,6,7,13
chr1	156307593	.	C	CA	843.12	PASS	AC=1;AF=0.538;AN=2;DP=1264;set=variant-variant4-variant5-variant6-variant7-variant14-variant19-variant32-variant33-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,39:85:99:824,0,1056:16,30,17,22
chr1	156308105	.	G	A	3116.96	PASS	AC=1;AF=0.5;AN=2;DP=639;MQ=60;set=variant5-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:105,125:230:99:3159,0,2787:63,42,77,48
chr1	156340955	.	CT	CTT,C	34.43	PASS	AC=1,0;AF=0.333,0.167;AN=2;DP=61;MQ=60;set=filterInvariant8-filterInvariant29-variant41	GT:DP:GQ:SB	0/1:12:88:1,4,2,5
chr1	156347834	.	T	A	1291.93	PASS	AC=1;AF=0.56;AN=2;DP=2760;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant19-variant21-variant23-variant26-variant27-variant28-variant30-variant33-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,52:108:99:1147,0,1309:31,25,28,24
chr1	156351699	.	G	A	3446.93	PASS	AC=1;AF=0.727;AN=2;DP=3241;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,43:99:99:930,0,1530:31,25,26,17
chr1	156351792	.	G	A	3053.68	PASS	AC=1;AF=0.742;AN=2;DP=2825;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,41:94:99:981,0,1315:29,24,19,22
chr1	156352012	.	G	A	1237.34	PASS	AC=1;AF=0.5;AN=2;DP=123;FractionInformativeReads=1;MQ=60;set=variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:1208,0,1648:16,15,13,18
chr1	156352013	.	T	C	1237.34	PASS	AC=1;AF=0.5;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:1208,0,1648:16,15,13,18
chr1	156352447	.	G	T	350.8	PASS	AC=1;AF=0.607;AN=2;DP=558;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant19-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,18:27:99:505,0,279:8,1,11,7
chr1	156353970	.	A	G	410.83	PASS	AC=1;AF=0.528;AN=2;DP=550;MQ=60;set=variant2-variant6-variant8-variant9-variant10-variant14-variant15-variant19-variant20-variant23-variant24-variant29-variant31-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:514,0,368:10,5,14,2
chr1	156354293	.	A	G	581.2	PASS	AC=1;AF=0.548;AN=2;DP=2304;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant14-variant15-variant19-variant20-variant23-variant24-variant29-variant31-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,71:108:99:1870,0,808:16,21,32,39
chr1	156354347	.	TC	T	402.52	PASS	AC=1;AF=0.548;AN=2;DP=1599;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant14-variant15-variant19-variant20-variant23-variant24-variant29-variant31-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,43:69:99:1106,0,583:9,17,16,27
chr1	156354367	.	A	G	538.46	PASS	AC=2;AF=0.757;AN=2;DP=2477;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2119,185,0:0,0,24,38
chr1	156376680	.	A	G	379.68	PASS	AC=2;AF=1;AN=2;DP=445;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:579,42,0:0,0,13,1
chr1	156434703	.	G	T	1495	PASS	AC=1;AF=0.733;AN=2;DP=2427;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,38:65:99:1019,0,758:15,12,13,25
chr1	156446242	.	C	A	3100.41	PASS	AC=1;AF=0.733;AN=2;DP=6790;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,55:138:99:1427,0,2208:49,34,36,19
chr1	156446450	.	C	T	1702.92	PASS	AC=1;AF=0.733;AN=2;DP=2317;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,32:70:99:996,0,1208:7,31,5,27
chr1	156446903	.	T	C	3769.86	PASS	AC=1;AF=0.733;AN=2;DP=5800;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,61:120:99:1385,0,1318:29,30,31,30
chr1	156450719	.	G	A	1617.2	PASS	AC=1;AF=0.529;AN=2;DP=2163;MQ=60;set=variant8-variant14-variant15-variant18-variant19-variant23-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,46:116:99:1116,0,1819:28,42,16,30
chr1	156450740	.	G	A	3131.12	PASS	AC=1;AF=0.733;AN=2;DP=5019;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,57:94:99:1385,0,951:17,20,25,32
chr1	156450873	.	T	C	663.47	PASS	AC=1;AF=0.761;AN=2;DP=1206;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:299,0,275:3,9,1,8
chr1	156452870	.	G	A	1570.29	PASS	AC=1;AF=0.733;AN=2;DP=3056;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,40:72:99:1142,0,1016:27,5,27,13
chr1	156453247	.	T	A	930.24	PASS	AC=1;AF=0.733;AN=2;DP=1873;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:704,0,474:8,13,7,18
chr1	156460308	.	T	A	817.35	PASS	AC=2;AF=0.955;AN=2;DP=1407;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1228,104,0:0,0,23,12
chr1	156460511	.	C	T	275.34	PASS	AC=1;AF=0.529;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant15-variant18-variant19-variant23-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:418,0,364:5,9,8,11
chr1	156496188	.	A	G	2526.96	PASS	AC=2;AF=0.989;AN=2;DP=4111;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3812,362,0:0,0,65,56
chr1	156503541	.	T	C	191.63	PASS	AC=2;AF=1;AN=2;DP=1014;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:803,66,0:0,0,12,10
chr1	156509552	.	C	G	2473.02	PASS	AC=2;AF=1;AN=2;DP=3215;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2656,233,0:0,0,59,19
chr1	156518433	.	C	T	1318.24	PASS	AC=1;AF=0.5;AN=2;DP=369;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,58:125:99:1427,0,1732:29,38,26,32
chr1	156520173	.	T	A	2040.58	PASS	AC=2;AF=0.989;AN=2;DP=4821;MQ=60;MQRankSum=-1.518;ReadPosRankSum=1.552;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2952,275,0:0,0,51,41
chr1	156526234	.	C	T	1099.55	PASS	AC=2;AF=0.989;AN=2;DP=2749;MQ=60;MQRankSum=-1.114;ReadPosRankSum=0.841;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2260,216,0:0,0,44,28
chr1	156526387	.	C	G	548.35	PASS	AC=1;AF=0.688;AN=2;DP=3610;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,47:103:99:1124,0,1439:25,31,21,26
chr1	156526444	.	T	C	982.89	PASS	AC=2;AF=0.989;AN=2;DP=2762;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2282,219,0:0,0,28,45
chr1	156531474	.	A	G	354.04	PASS	AC=2;AF=0.989;AN=2;DP=1269;FractionInformativeReads=1;MQ=60;MQRankSum=0.216;ReadPosRankSum=-0.216;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:646,57,0:0,0,13,6
chr1	156531871	.	A	G	2709.11	PASS	AC=2;AF=0.989;AN=2;DP=4341;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3442,324,0:0,0,41,67
chr1	156532344	.	T	G	1079.68	PASS	AC=2;AF=0.761;AN=2;DP=2896;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1832,162,0:0,0,41,13
chr1	156532908	.	C	A	1215.7	PASS	AC=2;AF=0.761;AN=2;DP=6750;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:3905,397,0:0,0,70,63
chr1	156532977	.	T	C	3172.06	PASS	AC=2;AF=0.989;AN=2;DP=5831;MQ=60;MQRankSum=1.536;ReadPosRankSum=-0.347;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3782,369,0:0,0,52,71
chr1	156534525	.	A	C	524.85	PASS	AC=2;AF=0.726;AN=2;DP=1200;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1075,90,0:0,0,8,22
chr1	156534539	.	G	A	405.61	PASS	AC=2;AF=0.761;AN=2;DP=1039;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:799,66,0:0,0,6,16
chr1	156536123	.	T	C	331.77	PASS	AC=2;AF=0.989;AN=2;DP=739;FractionInformativeReads=1;MQ=60;MQRankSum=-1.359;ReadPosRankSum=-0.453;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:675,45,0:0,0,12,3
chr1	156536133	.	A	G	331.77	PASS	AC=2;AF=0.989;AN=2;DP=861;MQ=60;MQRankSum=-1.244;ReadPosRankSum=-2.096;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:54:759,54,0:0,0,13,4
chr1	156536221	.	G	C	1213.39	PASS	AC=2;AF=0.989;AN=2;DP=2879;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1891,162,0:0,0,38,16
chr1	156536251	.	T	C	1823.63	PASS	AC=2;AF=0.989;AN=2;DP=4016;FractionInformativeReads=1;MQ=60;MQRankSum=0.527;ReadPosRankSum=0.776;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2931,246,0:0,0,56,26
chr1	156536353	.	A	G	3544.08	PASS	AC=2;AF=0.989;AN=2;DP=7088;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4485,449,0:0,0,74,76
chr1	156536480	.	T	C	1840.63	PASS	AC=2;AF=0.989;AN=2;DP=2431;MQ=60;MQRankSum=0.184;ReadPosRankSum=0.282;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1608,150,0:0,0,19,31
chr1	156538973	.	A	G	292.45	PASS	AC=2;AF=0.988;AN=2;DP=285;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:87,6,0:0,0,2,0
chr1	156539019	.	CA	C	519.09	PASS	AC=2;AF=0.988;AN=2;DP=538;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:278,30,0:0,0,6,4
chr1	156539154	.	T	C	1198.79	PASS	AC=2;AF=0.989;AN=2;DP=1942;MQ=60;MQRankSum=1.549;ReadPosRankSum=1.062;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1269,111,0:0,0,24,13
chr1	156539284	.	G	A	600.33	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.138;QD=13.34;ReadPosRankSum=-1.023;SOR=0.852;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:629,0,501:8,11,10,16
chr1	156539320	.	CTTTTTTT	CTTTTTTTTT,CTTTTTTTT,CTTTTTTTTTTT,CTTTTTT,C,CTTTTTTTTTT	152.57	PASS	AC=0,1,0,0,0,0;AF=0.211,0.316,0.026,0.026,0.026,0.026;AN=2;DP=556;set=variant-variant2-variant6-variant7-variant9-variant10-variant12-variant14-variant15-filterInvariant16-variant21-variant23-variant25-filterInvariant26-variant28-variant31-variant32-variant33-variant41	GT:DP:GQ:SB	0/2:13:12:0,3,2,8
chr1	156542218	.	C	T	1903.26	PASS	AC=1;AF=0.5;AN=2;DP=628;FractionInformativeReads=1;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,56:92:99:1442,0,911:24,12,34,22
chr1	156550968	.	A	C	135.12	PASS	AC=1;AF=0.55;AN=2;DP=196;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant16-variant19-variant23-variant33-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:35:374,0,35:2,1,8,4
chr1	156551092	.	G	T	350.03	PASS	AC=1;AF=0.563;AN=2;DP=275;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant16-variant19-variant33-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:513,0,392:9,9,12,5
chr1	156551848	.	A	G	1548.27	PASS	AC=1;AF=0.731;AN=2;DP=3956;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,58:107:99:1516,0,1227:17,32,24,34
chr1	156552720	.	T	G	468.2	PASS	AC=1;AF=0.932;AN=2;DP=807;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:185,0,273:5,3,6,0
chr1	156553231	.	GC	G	2160.04	PASS	AC=1;AF=0.5;AN=2;DP=597;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:879,0,986:19,14,17,13
chr1	156553494	.	T	C	345.46	PASS	AC=1;AF=0.5;AN=2;DP=1592;MQ=60;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant10-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant22-variant24-filterInvariant25-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant35-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:39,12:51:99:135,0,737:10,29,12,0
chr1	156553762	.	A	C	228.73	PASS	AC=1;AF=0.932;AN=2;DP=813;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:345,0,253:1,7,2,9
chr1	156556321	.	G	A	3048.23	PASS	AC=1;AF=0.907;AN=2;DP=5567;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,43:98:99:1073,0,1420:36,19,26,17
chr1	156556606	.	A	G	345.74	PASS	AC=2;AF=1;AN=2;DP=918;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:871,72,0:0,0,7,17
chr1	156561414	.	T	C	655.34	PASS	AC=1;AF=0.932;AN=2;DP=1207;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:268,0,256:5,6,6,5
chr1	156561557	.	G	GGGGCCGGGCC,GGGGTCGGGCC,GGGGCCGGGCCGGGCC	2495.94	PASS	AC=1,0,1;AF=0.648,0.295,0.057;AN=2;DP=2606;FS=0;set=Intersection	GT:DP:GQ:SB	1/3:52:99:1,0,31,20
chr1	156561651	.	G	C	5478.29	PASS	AC=1;AF=0.932;AN=2;DP=9206;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:103,94:197:99:2198,0,2588:64,39,55,39
chr1	156562008	.	G	A	2694.55	PASS	AC=1;AF=0.932;AN=2;DP=3184;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,36:79:99:1003,0,1246:10,33,9,27
chr1	156562143	.	G	A	605.04	PASS	AC=1;AF=0.932;AN=2;DP=1372;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:458,0,449:10,5,10,6
chr1	156563375	.	G	A	1266.67	PASS	AC=1;AF=0.932;AN=2;DP=3712;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,42:85:99:997,0,1058:20,23,22,20
chr1	156563441	.	G	A	1129.58	PASS	AC=1;AF=0.5;AN=2;DP=488;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:987,0,1171:18,22,20,18
chr1	156563726	.	A	C	3362.84	PASS	AC=1;AF=0.932;AN=2;DP=6323;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:70,62:132:99:1642,0,1747:34,36,27,35
chr1	156563813	.	G	A	2921.79	PASS	AC=1;AF=0.932;AN=2;DP=4851;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,37:84:99:927,0,1400:18,29,15,22
chr1	156563852	.	C	T	2101.31	PASS	AC=1;AF=0.932;AN=2;DP=3649;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:39,26:65:99:701,0,1142:14,25,9,17
chr1	156563898	.	T	C	1450.6	PASS	AC=1;AF=0.932;AN=2;DP=2398;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,26:52:99:680,0,675:13,13,9,17
chr1	156563992	.	C	G	840.81	PASS	AC=1;AF=0.932;AN=2;DP=2028;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:733,0,572:9,15,13,15
chr1	156564577	.	A	G	1278.16	PASS	AC=1;AF=0.5;AN=2;DP=432;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,24:56:99:692,0,1043:12,20,9,15
chr1	156564606	.	G	A	1050.96	PASS	AC=1;AF=0.5;AN=2;DP=344;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:600,0,947:13,17,9,14
chr1	156564640	.	G	A	921.4	PASS	AC=1;AF=0.744;AN=2;DP=2331;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,34:52:99:1024,0,475:9,9,18,16
chr1	156564726	.	T	C	1603.82	PASS	AC=1;AF=0.5;AN=2;DP=634;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,43:102:99:1134,0,1545:31,28,27,16
chr1	156564754	.	A	G	1928.85	PASS	AC=1;AF=0.5;AN=2;DP=780;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,63:129:99:1551,0,1613:36,30,39,24
chr1	156564922	.	C	T	3605.25	PASS	AC=1;AF=0.737;AN=2;DP=11168;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,119:244:99:2878,0,3189:66,59,68,51
chr1	156565049	.	A	AAC	12589	PASS	AC=2;AF=1;AN=2;DP=11760;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,259:259:99:11539,781,0:0,0,120,139
chr1	156565170	.	T	G	2744.86	PASS	AC=1;AF=0.5;AN=2;DP=1081;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,99:187:99:2652,0,2416:43,45,44,55
chr1	156565218	.	C	T	2715.54	PASS	AC=1;AF=0.5;AN=2;DP=1124;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:92,105:197:99:2978,0,2631:43,49,50,55
chr1	156566008	.	A	G	1782.93	PASS	AC=1;AF=0.5;AN=2;DP=542;FractionInformativeReads=1;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,44:89:99:1091,0,1237:22,23,26,18
chr1	156567400	.	A	G	362.32	PASS	AC=1;AF=0.5;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,109:2,1,1,1
chr1	156567496	.	C	T	240.81	PASS	AC=1;AF=0.744;AN=2;DP=2163;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:711,0,767:20,11,19,7
chr1	156567730	.	T	C	1703.29	PASS	AC=1;AF=0.5;AN=2;DP=933;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,63:139:99:1553,0,1980:40,36,31,32
chr1	156567778	.	A	G	1651.17	PASS	AC=1;AF=0.5;AN=2;DP=991;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,66:144:99:1817,0,2165:41,37,39,27
chr1	156568252	.	A	G	1180.54	PASS	AC=1;AF=0.5;AN=2;DP=646;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,43:106:99:941,0,1546:24,39,17,26
chr1	156568353	.	C	A	253.85	PASS	AC=1;AF=0.5;AN=2;DP=124;FractionInformativeReads=1;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:369,0,604:0,16,2,10
chr1	156570967	.	C	T	288.34	PASS	AC=1;AF=0.5;AN=2;DP=86;FractionInformativeReads=1;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:199,0,219:4,2,5,5
chr1	156571243	.	G	C	1575.03	PASS	AC=1;AF=0.5;AN=2;DP=860;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:95,86:181:99:2198,0,2243:49,46,43,43
chr1	156571335	.	T	C	1640.93	PASS	AC=1;AF=0.5;AN=2;DP=633;FractionInformativeReads=1;MQ=60;set=variant11-variant16-variant19-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,72:141:99:1820,0,1665:27,42,29,43
chr1	156594656	.	C	A	649.67	PASS	AC=1;AF=0.737;AN=2;DP=1733;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:422,0,694:8,16,4,12
chr1	156595279	.	G	A	794.61	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.091;QD=8.83;ReadPosRankSum=-1.943;SOR=0.695;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:53,37:90:99:823,0,1401:23,30,16,21
chr1	156595447	.	G	A	2377.9	PASS	AC=1;AF=0.895;AN=2;DP=3527;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,42:102:99:908,0,1372:27,33,20,22
chr1	156615827	.	TC	T	2094.75	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=1.376;FractionInformativeReads=0.97;MQ=60;MQRankSum=-0.127;QD=15.52;ReadPosRankSum=0.935;SOR=0.829;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,71:131:99:2132,0,1742:31,29,39,32
chr1	156618768	.	T	G	314.43	PASS	AC=1;AF=0.683;AN=2;DP=553;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:335,0,228:2,6,1,9
chr1	156626340	.	C	G	374.88	PASS	AC=1;AF=0.5;AN=2;DP=269;FractionInformativeReads=1;MQ=60;set=variant5-variant18-variant24-variant26-variant27-variant28-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:501,0,423:2,12,5,13
chr1	156626358	.	C	A	333.13	PASS	AC=1;AF=0.667;AN=2;DP=708;MQ=60;set=variant3-filterInvariant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant29-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:358,0,356:4,10,0,10
chr1	156626920	.	T	C	5920.85	PASS	AC=2;AF=1;AN=2;DP=10102;FS=0;MQ=60;MQRankSum=1.313;ReadPosRankSum=0.853;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,253:253:99:7702,757,0:0,0,98,155
chr1	156629037	.	A	G	1282.37	PASS	AC=1;AF=0.625;AN=2;DP=2198;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant29-variant30-variant31-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,25:74:99:601,0,1291:23,26,10,15
chr1	156638495	.	A	G	66.22	PASS	AC=2;AF=0.853;AN=2;DP=300;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:515,45,0:0,0,10,5
chr1	156639753	.	G	A	1584.85	PASS	AC=1;AF=0.763;AN=2;DP=7833;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:105,76:181:99:2123,0,2982:48,57,34,42
chr1	156640156	.	G	A	3147.98	PASS	AC=1;AF=0.763;AN=2;DP=11341;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:166,131:297:99:3040,0,4093:95,71,74,57
chr1	156640678	.	G	A,C	355.1	PASS	AC=1,0;AF=0.75,0.013;AN=2;DP=2443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:65:99:10,35,1,19
chr1	156646668	.	A	G	2610.86	PASS	AC=2;AF=0.989;AN=2;DP=3930;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2882,287,0:0,0,50,46
chr1	156670545	.	C	T	1399.26	PASS	AC=1;AF=0.977;AN=2;DP=1226;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:467,0,600:9,10,5,9
chr1	156692678	.	T	C	628.5	PASS	AC=2;AF=1;AN=2;DP=863;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:513,45,0:0,0,8,7
chr1	156698346	.	C	A	224.42	PASS	AC=1;AF=0.538;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant16-variant17-variant25-variant28-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:331,0,368:2,10,2,9
chr1	156705464	.	G	A	871.8	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0;FractionInformativeReads=0.989;MQ=60;MQRankSum=-0.924;QD=9.27;ReadPosRankSum=-2.51;SOR=0.706;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,35:93:99:900,0,1644:41,17,25,10
chr1	156705593	.	G	C	5312.18	PASS	AC=2;AF=1;AN=2;DP=10444;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,235:235:99:6850,705,0:0,0,110,125
chr1	156706285	.	T	G	666.48	PASS	AC=2;AF=0.607;AN=2;DP=450;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant16-variant17-variant25-variant28-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1317,111,0:0,0,29,8
chr1	156706559	.	A	C,G	5984.76	PASS	AC=0,2;AF=0.33,0.67;AN=2;DP=6753;FS=0;MQ=60;set=Intersection	GT:DP:GQ:SB	2/2:130:99:0,0,74,56
chr1	156707775	.	T	G	767.56	PASS	AC=2;AF=1;AN=2;DP=2119;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1725,155,0:0,0,34,18
chr1	156708126	.	T	G	1217.91	PASS	AC=1;AF=0.5;AN=2;DP=125;FS=3.299;FractionInformativeReads=1;MQ=60;MQRankSum=0.565;QD=9.74;ReadPosRankSum=-0.028;SOR=0.451;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:74,51:125:99:1246,0,2020:43,31,26,25
chr1	156708244	.	C	T,G	500.89	PASS	AC=2,0;AF=0.531,0.063;AN=2;DP=2661;MQ=60;set=variant-variant4-variant7-variant8-variant10-variant12-variant13-variant16-variant17-variant25-variant28-variant31-variant33-variant38-variant41-variant42	GT:DP:GQ:SB	1/1:179:99:0,0,96,83
chr1	156710817	.	G	T	453.66	PASS	AC=1;AF=0.571;AN=2;DP=949;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant16-variant17-variant25-variant28-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,51:80:99:1136,0,735:21,8,29,22
chr1	156712773	.	G	A	707	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.148;QD=11.4;ReadPosRankSum=-2.923;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,32:62:99:735,0,676:15,15,16,16
chr1	156713512	.	C	T	1226.57	PASS	AC=2;AF=1;AN=2;DP=2623;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2142,198,0:0,0,31,35
chr1	156715427	.	C	T	209.04	PASS	AC=2;AF=0.615;AN=2;DP=202;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant16-variant17-variant28-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:691,60,0:0,0,6,14
chr1	156737969	.	C	T	1388.14	PASS	AC=1;AF=0.571;AN=2;DP=2564;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant16-variant17-variant25-variant28-variant31-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:103,67:170:99:1505,0,2633:55,48,36,31
chr1	156752048	.	C	G	1933.58	PASS	AC=2;AF=0.776;AN=2;DP=2406;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1481,150,0:0,0,24,26
chr1	156752231	.	AT	A	355.76	PASS	AC=2;AF=0.818;AN=2;DP=359;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:250,21,0:0,0,0,7
chr1	156761420	.	A	G	280.53	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.643;QD=14.03;ReadPosRankSum=2.91;SOR=0.307;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:309,0,364:9,1,8,2
chr1	156784982	.	T	C	1586.99	PASS	AC=2;AF=0.737;AN=2;DP=2032;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1693,162,0:0,0,26,28
chr1	156785356	.	T	C	1060.39	PASS	AC=2;AF=0.976;AN=2;DP=2016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1994,159,0:0,0,41,12
chr1	156785617	.	G	A	2774.7	PASS	AC=2;AF=0.776;AN=2;DP=5562;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:5231,468,0:0,0,65,91
chr1	156785733	.	T	C	1751.67	PASS	AC=1;AF=0.5;AN=2;DP=114;FS=1.508;FractionInformativeReads=1;MQ=60;MQRankSum=-1.732;QD=15.37;ReadPosRankSum=-0.117;SOR=0.862;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,62:114:99:1780,0,1276:23,29,25,37
chr1	156785762	.	AG	A	2179.51	PASS	AC=2;AF=0.724;AN=2;DP=3819;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:4610,310,0:0,0,43,56
chr1	156785771	.	A	G	2364.75	PASS	AC=2;AF=0.737;AN=2;DP=3755;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:4820,325,0:0,0,45,61
chr1	156785779	.	G	A	2067.87	PASS	AC=2;AF=0.776;AN=2;DP=3671;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:4538,307,0:0,0,43,59
chr1	156786363	.	G	A	499.47	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.293;QD=14.69;ReadPosRankSum=0.293;SOR=0.591;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:528,0,437:12,4,13,5
chr1	156786416	.	A	T	720.94	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=0.882;FractionInformativeReads=1;MQ=60;MQRankSum=0.498;QD=9.13;ReadPosRankSum=0.814;SOR=0.57;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:749,0,1068:29,15,22,13
chr1	156786839	.	T	TTCTCTCTCTCTCTC,TTCTCCCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTC,TTCTCTC,TTCTCTCTCTCTCTCTCTC,TTCTC,TTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTCTCTC	251.09	PASS	AC=0,0,0,0,0,0,0,0,2,0;AF=0.1,0.017,0.067,0.3,0.25,0.033,0.05,0.067,0.033,0.033;AN=2;DP=608;set=variant-variant3-variant4-variant5-variant7-variant10-variant13-variant15-variant16-variant17-variant18-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	9/9:7:19:0,0,2,5
chr1	156810090	.	A	G	1025.05	PASS	AC=2;AF=0.886;AN=2;DP=1537;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1108,102,0:0,0,20,14
chr1	156814027	.	G	A	1508.98	PASS	AC=1;AF=0.536;AN=2;DP=1772;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant10-variant13-variant25-variant31-variant34-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,57:114:99:1535,0,1452:28,29,22,35
chr1	156830486	.	C	T	135.58	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.264;QD=7.53;ReadPosRankSum=-2.388;SOR=0.512;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:164,0,357:10,2,5,1
chr1	156831094	.	C	T	252.9	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=5.643;FractionInformativeReads=1;MQ=60;MQRankSum=0.566;QD=22.99;ReadPosRankSum=0;SOR=3.611;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:99:281,0,100:1,2,0,8
chr1	156833913	.	A	G	388.12	PASS	AC=1;AF=0.5;AN=2;DP=180;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,19:52:99:408,0,735:17,16,11,8
chr1	156834004	.	TGTAA	T	1563.96	PASS	AC=1;AF=0.5;AN=2;DP=155;MQ=60;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,32:72:99:1223,0,2315:21,19,22,10
chr1	156836838	.	T	C	602.6	PASS	AC=1;AF=0.5;AN=2;DP=287;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant26-variant27-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,25:40:99:937,0,446:2,13,3,22
chr1	156841674	.	G	A	540.05	PASS	AC=1;AF=0.5;AN=2;DP=129;MQ=60;set=variant16-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:465,0,236:4,6,8,9
chr1	156845492	.	AGTGTGTGTGTGT	AGTGTGTGTGTGTGTGT,A,AGTGTGTGTGTGTGTGTGT,AGTGTGTGTGT,AGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGT	809.19	PASS	AC=1,0,0,0,1,0;AF=0.489,0.023,0.125,0.125,0.114,0.011;AN=2;DP=3699;set=Intersection	GT:DP:GQ:SB	5/1:47:99:2,3,13,29
chr1	156848995	.	C	T	1218.43	PASS	AC=1;AF=0.763;AN=2;DP=6074;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,90:183:99:2229,0,2198:51,42,49,41
chr1	156863532	.	T	C	1122.87	PASS	AC=2;AF=1;AN=2;DP=1833;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:790,78,0:0,0,14,12
chr1	156863617	.	G	T	503.43	PASS	AC=2;AF=0.895;AN=2;DP=2218;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,54:55:99:1439,153,0:1,0,28,26
chr1	156872149	.	G	A	418.52	PASS	AC=1;AF=0.768;AN=2;DP=2080;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,15:40:99:353,0,659:13,12,5,10
chr1	156874874	.	TGG	T,TGGG,TG	1520.62	PASS	AC=0,0,1;AF=0.455,0.045,0.045;AN=2;DP=601;MQ=60;set=variant10-variant12-variant13-variant14-variant16-variant29-variant36-variant37-variant38-variant40-variant41	GT:DP:GQ:SB	0/3:47:99:10,14,5,18
chr1	156875037	.	T	G	126.16	PASS	AC=1;AF=0.548;AN=2;DP=853;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant20-variant24-variant29-variant34-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,19:49:99:466,0,838:21,9,12,7
chr1	156875092	.	G	A	1297.23	PASS	AC=1;AF=0.762;AN=2;DP=3249;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,51:78:99:2098,0,977:13,14,31,20
chr1	156875097	.	G	A	1375.13	PASS	AC=1;AF=0.786;AN=2;DP=3408;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,53:84:99:2194,0,1219:16,15,31,22
chr1	156875107	.	C	A	1357.89	PASS	AC=1;AF=0.762;AN=2;DP=3736;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,57:94:99:2172,0,1319:19,18,31,26
chr1	156875377	.	G	C	506.74	PASS	AC=2;AF=0.955;AN=2;DP=837;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:900,72,0:0,0,7,17
chr1	156875935	.	T	C	474.4	PASS	AC=1;AF=0.55;AN=2;DP=376;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:611,0,603:16,6,15,6
chr1	156875975	.	T	C	823.73	PASS	AC=1;AF=0.5;AN=2;DP=121;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:937,0,794:21,9,23,12
chr1	156875985	.	G	A	1692.65	PASS	AC=2;AF=1;AN=2;DP=3677;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3058,237,0:0,0,55,24
chr1	156876206	.	G	A	1384.08	PASS	AC=1;AF=0.55;AN=2;DP=953;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,50:92:99:1685,0,3826:12,30,21,29
chr1	156876221	.	G	A	1332.6	PASS	AC=1;AF=0.55;AN=2;DP=773;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,36:69:99:1424,0,3775:9,24,11,25
chr1	156876237	.	C	T	1003.3	PASS	AC=1;AF=0.55;AN=2;DP=614;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:1088,0,3320:8,21,8,19
chr1	156876260	.	C	T	692.92	PASS	AC=1;AF=0.55;AN=2;DP=437;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,17:40:99:641,0,2428:6,17,3,14
chr1	156876373	.	A	G	312.06	PASS	AC=1;AF=0.55;AN=2;DP=443;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:799,0,685:20,4,18,5
chr1	156876729	.	T	C	690.49	PASS	AC=1;AF=0.55;AN=2;DP=770;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,37:89:99:935,0,1405:24,28,14,23
chr1	156877249	.	A	G	313.78	PASS	AC=1;AF=0.55;AN=2;DP=410;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant15-variant20-variant24-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:627,0,602:16,7,16,7
chr1	156877457	.	T	C	2211.71	PASS	AC=2;AF=1;AN=2;DP=6402;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4622,454,0:0,0,66,86
chr1	156877600	.	G	GGAGGGT	778.15	PASS	AC=1;AF=0.5;AN=2;DP=288;MQ=60;set=variant10-variant11-variant29-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,32:74:99:1196,0,2728:35,7,28,4
chr1	156882471	.	C	A	1659.88	PASS	AC=1;AF=0.5;AN=2;DP=131;FS=3.152;FractionInformativeReads=1;MQ=60;MQRankSum=-0.154;QD=12.67;ReadPosRankSum=-2.824;SOR=0.995;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,66:131:99:1688,0,1591:34,31,39,27
chr1	156882853	.	G	C	1390.26	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=5.424;FractionInformativeReads=1;MQ=60;MQRankSum=-1.293;QD=14.63;ReadPosRankSum=0.294;SOR=0.331;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,50:95:99:1418,0,1267:32,13,30,20
chr1	156883263	.	G	T	1772.16	PASS	AC=1;AF=0.5;AN=2;DP=366;MQ=60;set=variant11-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:67,48:115:99:1236,0,1746:25,42,17,31
chr1	156883593	.	G	C	1540.53	PASS	AC=1;AF=0.5;AN=2;DP=164;FS=1.254;FractionInformativeReads=1;MQ=60;MQRankSum=-0.164;QD=9.39;ReadPosRankSum=-0.331;SOR=0.842;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:97,67:164:99:1569,0,2436:53,44,39,28
chr1	156884103	.	T	A	133.42	PASS	AC=1;AF=0.5;AN=2;DP=129;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant11-variant15-variant20-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:181,0,99:0,3,2,4
chr1	156884365	.	T	C	1011.98	PASS	AC=1;AF=0.738;AN=2;DP=1823;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:607,0,797:22,7,16,7
chr1	156884714	.	G	A	976.45	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=2.89;FractionInformativeReads=1;MQ=60;MQRankSum=1.554;QD=11.35;ReadPosRankSum=-2.56;SOR=1.061;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,36:86:99:1005,0,1298:25,25,15,21
chr1	156884958	.	T	C	960.36	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=4.319;FractionInformativeReads=1;MQ=60;MQRankSum=0.525;QD=12.16;ReadPosRankSum=-0.819;SOR=1.122;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:989,0,1142:20,19,16,24
chr1	156894005	.	G	A	461.65	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.195;QD=12.15;ReadPosRankSum=-0.106;SOR=0.576;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:490,0,1427:8,16,5,9
chr1	156894006	.	C	G	66.5	PASS	AC=1;AF=0.65;AN=2;DP=1023;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,13:37:99:490,0,1427:8,16,4,9
chr1	156894613	.	G	T	939.13	PASS	AC=1;AF=0.5;AN=2;DP=1011;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:880,0,825:19,10,24,9
chr1	156894825	.	C	T	486.14	PASS	AC=1;AF=0.5;AN=2;DP=1358;MQ=60;set=variant2-variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:786,0,702:9,20,12,21
chr1	156897967	.	G	C	520.37	PASS	AC=1;AF=0.526;AN=2;DP=626;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:297,0,273:2,7,5,7
chr1	156899288	.	G	A	480.78	PASS	AC=1;AF=0.5;AN=2;DP=730;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:774,0,835:8,17,3,20
chr1	156899592	.	A	G	105.69	PASS	AC=1;AF=0.553;AN=2;DP=326;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:215,0,227:1,6,2,5
chr1	156901888	.	T	C	232.31	PASS	AC=1;AF=0.525;AN=2;DP=586;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant11-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:452,0,400:1,12,1,12
chr1	156902222	.	G	A	202.69	PASS	AC=1;AF=0.5;AN=2;DP=394;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,23:36:99:630,0,385:11,2,14,9
chr1	156902259	.	G	A	198.21	PASS	AC=1;AF=0.641;AN=2;DP=1884;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,37:63:99:1012,0,845:22,4,23,14
chr1	156902281	.	T	G	653.27	PASS	AC=1;AF=0.529;AN=2;DP=1094;MQ=60;set=variant6-variant8-variant10-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,44:78:99:1197,0,1068:27,7,26,18
chr1	156902574	.	A	AT	154.85	PASS	AC=1;AF=0.526;AN=2;DP=945;MQ=60;set=variant2-variant6-variant8-variant10-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,23:57:99:383,0,741:16,18,11,12
chr1	156904818	.	G	A	70.48	PASS	AC=1;AF=0.55;AN=2;DP=93;FractionInformativeReads=1;MQ=60;set=variant6-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:106,0,189:5,2,3,1
chr1	156905584	.	A	G	1580.57	PASS	AC=1;AF=0.525;AN=2;DP=2486;MQ=60;set=variant2-variant6-variant8-variant10-variant11-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,58:99:99:1443,0,1154:17,24,32,26
chr1	156906910	.	C	T	335.34	PASS	AC=1;AF=0.526;AN=2;DP=869;MQ=60;set=variant2-variant6-variant8-variant10-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,28:43:99:761,0,361:11,4,14,14
chr1	156907025	.	G	GGGAAA	1564.05	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=2.922;FractionInformativeReads=1;MQ=60;MQRankSum=0.714;QD=19.07;ReadPosRankSum=0.733;SOR=1.024;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:1601,0,2364:23,18,26,15
chr1	156907026	.	CCCTGCTT	C	1558.1	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=1.81;FractionInformativeReads=1;MQ=60;MQRankSum=1.668;QD=18.33;ReadPosRankSum=1.536;SOR=1.002;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,40:85:99:1595,0,2429:25,20,25,15
chr1	156907081	.	T	C	842.3	PASS	AC=1;AF=0.65;AN=2;DP=3780;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,46:93:99:1232,0,1168:26,21,26,20
chr1	156909303	.	T	A	1196.99	PASS	AC=1;AF=0.5;AN=2;DP=1383;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,37:93:99:918,0,1467:34,22,25,12
chr1	156911379	.	A	G	917.93	PASS	AC=1;AF=0.5;AN=2;DP=1012;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,30:69:99:904,0,1209:7,32,5,25
chr1	156914070	.	C	A	809.43	PASS	AC=1;AF=0.5;AN=2;DP=861;FractionInformativeReads=1;set=variant2-variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:658,0,743:15,11,13,10
chr1	156914240	.	CCATTCATT	CCATT,C,CCATTCATTCATT	685.9	PASS	AC=0,1,0;AF=0.423,0.244,0.038;AN=2;DP=3909;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:75:99:13,18,17,27
chr1	156915038	.	C	T	760.26	PASS	AC=1;AF=0.524;AN=2;DP=1388;MQ=60;set=variant2-variant6-variant8-variant10-variant11-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,28:65:99:778,0,893:16,21,10,18
chr1	156916640	.	G	GCCTATCCCTT	601.32	PASS	AC=1;AF=0.524;AN=2;DP=1146;MQ=60;set=variant2-variant6-variant8-variant10-variant11-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:856,0,2488:5,17,9,13
chr1	156925435	.	T	C	2241.77	PASS	AC=1;AF=0.5;AN=2;DP=2278;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:76,79:155:99:2123,0,1856:46,30,53,26
chr1	156927751	.	T	C	456.95	PASS	AC=1;AF=0.5;AN=2;DP=481;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:456,0,252:1,7,4,12
chr1	156928776	.	A	T	586.49	PASS	AC=1;AF=0.5;AN=2;DP=1263;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,40:90:99:1189,0,1283:27,23,27,13
chr1	156930053	.	C	T	211.91	PASS	AC=1;AF=0.5;AN=2;DP=217;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:218,0,268:7,0,6,0
chr1	156932654	.	G	A	52.74	PASS	AC=1;AF=0.5;AN=2;DP=3;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.736;QD=17.58;ReadPosRankSum=0.736;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:36:81,0,36:1,0,2,0
chr1	156939175	.	C	T	650.69	PASS	AC=1;AF=0.59;AN=2;DP=3709;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,34:75:99:762,0,1067:23,18,18,16
chr1	156946898	.	T	G	1552.08	PASS	AC=1;AF=0.5;AN=2;DP=1958;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:84,68:152:99:1661,0,1981:36,48,28,40
chr1	156947928	.	T	C	1865.92	PASS	AC=1;AF=0.5;AN=2;DP=2236;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,71:144:99:1774,0,1930:33,40,31,40
chr1	156947953	.	A	T	1837.56	PASS	AC=1;AF=0.5;AN=2;DP=2266;MQ=60;set=variant6-variant8-variant15-variant16-variant20-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:76,71:147:99:1730,0,2059:37,39,29,42
chr1	156949153	.	CTTTT	CTTT,CT,CTTTTTT,CTT,CTTTTT,C	121.2	PASS	AC=0,0,0,0,1,0;AF=0.2,0.02,0.12,0.04,0.12,0.02;AN=2;DP=1052;set=variant4-variant5-variant9-variant10-variant12-variant14-filterInvariant15-filterInvariant18-filterInvariant19-filterInvariant20-variant21-variant24-variant26-filterInvariant27-variant28-variant31-filterInvariant33-variant34-variant36-variant38-variant39-variant40-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	0/5:13:63:0,7,1,5
chr1	156954267	.	C	T	765.9	PASS	AC=1;AF=0.569;AN=2;DP=4574;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:72,58:130:99:1219,0,1678:31,41,27,31
chr1	156954384	.	T	C	353.24	PASS	AC=1;AF=0.571;AN=2;DP=790;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:342,0,304:1,8,0,9
chr1	157014702	.	G	A	2075.83	PASS	AC=2;AF=0.608;AN=2;DP=7402;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:5516,548,0:0,0,98,85
chr1	157014964	.	T	A	1822.06	PASS	AC=1;AF=0.571;AN=2;DP=4813;set=variant-variant2-variant4-variant6-variant7-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:90,78:168:99:1723,0,2207:43,47,41,37
chr1	157043491	.	A	G	266.3	PASS	AC=2;AF=0.619;AN=2;DP=2586;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2009,177,0:0,0,27,32
chr1	157061973	.	C	T	435.23	PASS	AC=1;AF=0.638;AN=2;DP=1415;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:632,0,548:12,8,14,7
chr1	157062364	.	G	A	2106.31	PASS	AC=1;AF=0.635;AN=2;DP=2384;MQ=60;set=variant2-variant4-variant6-variant7-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:1076,0,1258:19,26,21,21
chr1	157062696	.	G	T	3934.78	PASS	AC=1;AF=0.625;AN=2;DP=3372;MQ=60;set=variant2-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,59:117:99:1470,0,1371:25,33,27,32
chr1	157062739	.	C	G	906.37	PASS	AC=1;AF=0.542;AN=2;DP=1258;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant16-variant25-variant27-variant30-variant31-variant32-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,53:108:99:1305,0,1545:22,33,26,27
chr1	157068533	.	G	A	590.8	PASS	AC=1;AF=0.5;AN=2;DP=351;FractionInformativeReads=1;MQ=60;set=variant7-variant18-variant23-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,24:65:99:601,0,1030:26,15,15,9
chr1	157069154	.	A	G	1664.77	PASS	AC=1;AF=0.5;AN=2;DP=2504;set=variant2-variant7-variant10-variant11-variant14-variant15-variant16-variant27-variant29-variant30-variant31-variant34-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,65:145:99:1686,0,2195:38,42,33,32
chr1	157069261	.	A	C	2227.45	PASS	AC=1;AF=0.5;AN=2;DP=1064;MQ=60;set=variant2-variant14-variant29-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,50:128:99:1224,0,1994:33,45,21,29
chr1	157094030	.	CAAA	CAA,C,CA	886.14	PASS	AC=1,0,0;AF=0.28,0.122,0.256;AN=2;DP=5534;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:91:99:10,18,55,8
chr1	157483234	.	C	G	127.43	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.633;QD=12.74;ReadPosRankSum=-0.365;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:156,0,107:3,1,4,2
chr1	157483440	.	C	T	168.71	PASS	AC=1;AF=0.662;AN=2;DP=1346;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:299,0,585:10,11,6,7
chr1	157483865	.	C	T	224	PASS	AC=1;AF=0.662;AN=2;DP=1220;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,21:32:99:646,0,388:7,4,11,10
chr1	157484453	.	G	A	567.79	PASS	AC=1;AF=0.643;AN=2;DP=2493;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,30:61:99:753,0,841:16,15,15,15
chr1	157484575	.	A	G	601.82	PASS	AC=1;AF=0.662;AN=2;DP=2547;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,31:69:99:843,0,990:19,19,20,11
chr1	157485561	.	G	A	666.67	PASS	AC=1;AF=0.706;AN=2;DP=2283;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:773,0,1015:17,17,15,12
chr1	157485720	.	T	C	359.81	PASS	AC=2;AF=0.989;AN=2;DP=660;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.241;ReadPosRankSum=-1.107;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:638,57,0:0,0,5,14
chr1	157489516	.	T	G	784.02	PASS	AC=1;AF=0.5;AN=2;DP=1658;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant8-variant10-variant14-variant16-variant17-variant20-variant22-variant28-variant33-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,55:99:99:1551,0,1138:24,20,26,29
chr1	157489940	.	T	C	34.9	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=3.68;FractionInformativeReads=1;MQ=60;MQRankSum=-0.937;QD=4.99;ReadPosRankSum=-0.55;SOR=0.061;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:63:63,0,100:3,0,2,2
chr1	157491173	.	T	A	1493.9	PASS	AC=2;AF=0.779;AN=2;DP=2536;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,59:60:99:1929,134,0:0,1,22,37
chr1	157491189	.	T	C	461.83	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.012;QD=9.62;ReadPosRankSum=2.424;SOR=0.793;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,19:48:99:490,0,769:10,19,6,13
chr1	157493685	.	G	C	11408.9	PASS	AC=2;AF=0.826;AN=2;DP=14827;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,354:354:99:10842,1059,0:0,0,195,159
chr1	157497263	.	T	C	1526.54	PASS	AC=2;AF=0.83;AN=2;DP=1930;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1856,156,0:0,0,36,16
chr1	157501930	.	G	A	8554.59	PASS	AC=2;AF=0.826;AN=2;DP=10365;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,245:245:99:7423,733,0:0,0,133,112
chr1	157502830	.	T	C	8142.3	PASS	AC=2;AF=0.826;AN=2;DP=8663;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,180:180:99:5450,540,0:0,0,84,96
chr1	157503805	.	G	A	3671.65	PASS	AC=1;AF=0.5;AN=2;DP=3595;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant14-variant16-variant17-variant20-variant22-variant28-variant31-variant33-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:113,98:211:99:2544,0,3020:41,72,33,65
chr1	157508882	.	C	T	412.08	PASS	AC=2;AF=0.826;AN=2;DP=1080;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1087,90,0:0,0,22,8
chr1	157509025	.	C	T	995.4	PASS	AC=2;AF=0.83;AN=2;DP=4689;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2441,248,0:0,0,43,40
chr1	157514097	.	A	G	3256.18	PASS	AC=1;AF=0.817;AN=2;DP=4498;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,57:113:99:1294,0,1231:32,24,31,26
chr1	157543762	.	C	T	6660.09	PASS	AC=1;AF=0.83;AN=2;DP=9542;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:106,132:238:99:3334,0,2670:46,60,59,73
chr1	157545047	.	A	G	698.8	PASS	AC=1;AF=0.636;AN=2;DP=1848;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,35:55:99:938,0,469:8,12,17,18
chr1	157545231	.	G	T	449.69	PASS	AC=1;AF=0.636;AN=2;DP=1690;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,22:61:99:557,0,1156:24,15,12,10
chr1	157548669	.	T	A	809.56	PASS	AC=1;AF=0.636;AN=2;DP=939;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:585,0,597:2,17,3,17
chr1	157556293	.	A	G	2082.22	PASS	AC=1;AF=0.5;AN=2;DP=150;FS=3.858;FractionInformativeReads=1;MQ=60;MQRankSum=1.569;QD=13.88;ReadPosRankSum=1.516;SOR=0.456;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,82:150:99:2110,0,1525:26,42,37,45
chr1	157557701	.	G	A	795.25	PASS	AC=1;AF=0.648;AN=2;DP=1223;MQ=60;set=variant-variant2-variant4-variant5-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,12:41:99:288,0,761:19,10,9,3
chr1	157567751	.	A	G	293.08	PASS	AC=1;AF=0.814;AN=2;DP=3228;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,40:84:99:963,0,1085:20,24,21,19
chr1	157647368	.	G	C	2992.88	PASS	AC=1;AF=0.5;AN=2;DP=470;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:112,120:232:99:3002,0,2695:55,57,59,61
chr1	157647526	.	A	T	1629.26	PASS	AC=1;AF=0.5;AN=2;DP=1736;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant17-variant21-variant22-variant26-variant31-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,44:88:99:1239,0,1393:18,26,14,30
chr1	157647789	.	C	A	6471.1	PASS	AC=1;AF=0.765;AN=2;DP=15914;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:278,223:501:99:5546,0,7171:148,130,113,110
chr1	157648278	.	T	C	1472.86	PASS	AC=1;AF=0.5;AN=2;DP=180;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,47:79:99:1244,0,934:11,21,16,31
chr1	157648371	.	T	G	368.69	PASS	AC=1;AF=0.5;AN=2;DP=937;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant18-variant21-variant22-variant26-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,28:45:99:843,0,487:8,9,8,20
chr1	157648826	.	G	C	118.58	PASS	AC=1;AF=0.5;AN=2;DP=47;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,6:20:99:117,0,422:3,11,2,4
chr1	157650539	.	G	A	789.58	PASS	AC=1;AF=0.5;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,37:75:99:888,0,1038:16,22,16,21
chr1	157650799	.	T	C	1465.55	PASS	AC=1;AF=0.5;AN=2;DP=230;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,62:112:99:1548,0,1219:32,18,33,29
chr1	157651032	.	T	A	166.35	PASS	AC=1;AF=0.5;AN=2;DP=202;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant21-variant26-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:460,0,228:2,6,0,12
chr1	157652929	.	TA	T	581.22	PASS	AC=1;AF=0.625;AN=2;DP=1612;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,27:46:99:673,0,408:13,6,19,8
chr1	157653186	.	CT	C	122.16	PASS	AC=1;AF=0.5;AN=2;DP=34;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:500,0,255:2,6,2,12
chr1	157670286	.	C	T	858.98	PASS	AC=1;AF=0.5;AN=2;DP=176;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,42:101:99:1557,0,3172:33,26,22,20
chr1	157670290	.	C	G	624.2	PASS	AC=1;AF=0.717;AN=2;DP=2626;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,43:101:99:1577,0,3135:33,25,23,20
chr1	157670394	.	G	C	989.87	PASS	AC=1;AF=0.5;AN=2;DP=154;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,38:79:99:1039,0,1151:20,21,17,21
chr1	157716863	.	A	G	206.28	PASS	AC=2;AF=1;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;QD=34.38;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:235,18,0:0,0,1,5
chr1	157718283	.	A	T	1682.86	PASS	AC=1;AF=0.881;AN=2;DP=2364;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,32:56:99:884,0,722:20,4,22,10
chr1	157737504	.	G	A	738.31	PASS	AC=1;AF=0.71;AN=2;DP=935;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:530,0,329:5,9,6,14
chr1	157740186	.	GTC	G	3247.16	PASS	AC=1;AF=0.724;AN=2;DP=2111;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,45:77:99:1787,0,2325:16,16,23,22
chr1	157740189	.	A	G	3256.19	PASS	AC=1;AF=0.724;AN=2;DP=2130;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,46:79:99:1787,0,2325:16,17,23,23
chr1	157768000	.	G	C	772.87	PASS	AC=1;AF=0.55;AN=2;DP=1370;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant22-variant26-variant31-variant34-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,30:61:99:744,0,800:17,14,16,14
chr1	157771844	.	C	G	1647.06	PASS	AC=1;AF=0.5;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,78:156:99:2070,0,2042:42,36,39,39
chr1	157771880	.	C	T	2164.43	PASS	AC=1;AF=0.667;AN=2;DP=3947;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,70:134:99:1912,0,1683:31,33,37,33
chr1	157771994	.	C	T	1145.35	PASS	AC=1;AF=0.5;AN=2;DP=223;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,48:102:99:1264,0,1470:22,32,19,29
chr1	157772038	.	A	T	934.49	PASS	AC=1;AF=0.5;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,39:77:99:1067,0,1105:16,22,17,22
chr1	157772404	.	C	T	1179.23	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=8.411;FractionInformativeReads=1;MQ=60;MQRankSum=-1.55;QD=11.56;ReadPosRankSum=-2.096;SOR=1.547;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,45:102:99:1207,0,1384:24,33,12,33
chr1	157773585	.	C	T	1007.4	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.333;QD=12.14;ReadPosRankSum=-1.454;SOR=0.7;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,43:83:99:1036,0,1003:26,14,28,15
chr1	157800603	.	G	A	800.96	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=9.032;FractionInformativeReads=0.98;MQ=60;MQRankSum=-0.01;QD=16.02;ReadPosRankSum=-0.391;SOR=2.443;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,26:49:99:829,0,635:17,6,24,2
chr1	157801578	.	T	A	599.18	PASS	AC=1;AF=0.579;AN=2;DP=1159;MQ=60;set=variant-variant11-variant13-variant14-variant15-variant18-variant21-variant24-variant25-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,34:53:99:966,0,453:6,13,17,17
chr1	157802877	.	T	C	1050.89	PASS	AC=1;AF=0.655;AN=2;DP=2539;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,50:94:99:1226,0,1169:24,20,31,19
chr1	157802979	.	C	T	1138.58	PASS	AC=2;AF=0.775;AN=2;DP=4555;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3219,308,0:0,0,52,51
chr1	157805539	.	G	A	226.13	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.359;QD=12.56;ReadPosRankSum=-0.815;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:254,0,436:11,0,7,0
chr1	157806006	.	G	A	1627.35	PASS	AC=2;AF=0.775;AN=2;DP=7235;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,177:177:99:5460,530,0:0,0,63,114
chr1	157811392	.	G	A	540.65	PASS	AC=2;AF=0.775;AN=2;DP=2433;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1376,129,0:0,0,30,13
chr1	157963362	.	GCGGGCTCC	G	1054.8	PASS	AC=1;AF=0.625;AN=2;DP=1577;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:810,0,2024:22,2,20,1
chr1	158045764	.	G	A	956.66	PASS	AC=2;AF=0.633;AN=2;DP=411;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant8-variant10-variant13-variant16-variant19-variant23-variant25-variant26-variant30-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1149,99,0:0,0,21,12
chr1	158056213	.	AAC	AACACAC,AACAC,AACACACAC,A	646.33	PASS	AC=1,0,0,1;AF=0.5,0.13,0.074,0.019;AN=2;DP=427;set=variant3-variant4-variant8-variant9-variant11-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	4/1:11:94:0,0,9,2
chr1	158056299	.	C	G	3599.96	PASS	AC=1;AF=0.648;AN=2;DP=2287;set=variant3-variant4-variant9-variant11-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,56:84:99:1513,0,650:20,8,37,19
chr1	158057633	.	C	G	692.92	PASS	AC=1;AF=0.575;AN=2;DP=1452;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant16-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:743,0,866:17,19,13,17
chr1	158057691	.	A	C	656.65	PASS	AC=2;AF=0.64;AN=2;DP=1432;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant14-variant16-variant17-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1880,162,0:0,0,23,31
chr1	158058266	.	CTTTT	CT,CTTT,CTT,CTTTTT,C	337.49	PASS	AC=0,0,1,0,0;AF=0.139,0.167,0.181,0.069,0.028;AN=2;DP=4119;set=variant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-variant7-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant18-variant19-variant20-variant21-filterInvariant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-filterInvariant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:43:99:8,14,1,20
chr1	158059224	.	T	C	284.73	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=1.695;FractionInformativeReads=1;MQ=60;MQRankSum=0.487;QD=8.37;ReadPosRankSum=-1.099;SOR=0.36;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,12:34:99:313,0,771:18,4,9,3
chr1	158065856	.	A	G	82.92	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=5.842;FractionInformativeReads=1;MQ=60;MQRankSum=-1.076;QD=4.88;ReadPosRankSum=-0.849;SOR=2.494;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,4:17:99:111,0,336:8,5,4,0
chr1	158069099	.	G	A	209.43	PASS	AC=1;AF=0.732;AN=2;DP=2094;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,16:48:99:403,0,834:17,15,10,6
chr1	158069787	.	T	A	1930.98	PASS	AC=2;AF=0.694;AN=2;DP=4954;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant17-variant18-variant20-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:4514,480,0:0,0,90,71
chr1	158069891	.	T	A	1278.69	PASS	AC=2;AF=0.688;AN=2;DP=2706;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant20-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2405,247,0:0,0,28,55
chr1	158150508	.	T	A	355.59	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=1.606;FractionInformativeReads=1;MQ=60;MQRankSum=0.302;QD=12.7;ReadPosRankSum=-0.395;SOR=1.127;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:384,0,345:8,4,12,4
chr1	158153996	.	T	C	5190.18	PASS	AC=2;AF=1;AN=2;DP=6675;FS=0;MQ=60;MQRankSum=0.133;ReadPosRankSum=0.763;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:5098,464,0:0,0,72,83
chr1	158224575	.	CTGTGTGTGTGTGTGTGTG	C,CTGTGTGTGTG,CTGTGTGTGTGTG,CTGTGTGTG,CTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTG,CTGTG,CTGTGTG	1394.96	PASS	AC=0,0,0,0,0,0,0,1;AF=0.075,0.113,0.275,0.088,0.15,0.063,0.013,0.025;AN=2;DP=3223;set=variant-variant2-variant3-variant5-filterInvariant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/8:32:99:2,7,5,18
chr1	158224825	.	C	T	1360.06	PASS	AC=1;AF=0.548;AN=2;DP=2133;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant14-variant15-variant18-variant20-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,47:100:99:1093,0,1326:27,26,28,19
chr1	158225083	.	C	T	1634.13	PASS	AC=1;AF=0.5;AN=2;DP=119;FS=3.321;FractionInformativeReads=1;MQ=60;MQRankSum=-2.409;QD=13.73;ReadPosRankSum=2.622;SOR=0.881;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,63:119:99:1662,0,1354:29,27,28,35
chr1	158226465	.	CAA	CA,CAAA,C	87.05	PASS	AC=1,0,0;AF=0.476,0.024,0.024;AN=2;DP=997;set=filterInvariant3-variant5-variant6-variant13-variant14-variant15-variant18-filterInvariant19-filterInvariant22-variant25-variant27-filterInvariant28-variant29-variant31-variant32-variant33-variant34-filterInvariant37-variant39-variant40-variant41	GT:DP:GQ:SB	0/1:37:99:7,2,23,5
chr1	158226573	.	C	T	3071.7	PASS	AC=1;AF=0.5;AN=2;DP=183;FS=2.837;FractionInformativeReads=1;MQ=60;MQRankSum=1.769;QD=16.79;ReadPosRankSum=-2.873;SOR=0.962;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,122:183:99:3100,0,1408:35,26,77,45
chr1	158227395	.	C	T	1352.22	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=5.033;FractionInformativeReads=1;MQ=60;MQRankSum=-0.808;QD=13.66;ReadPosRankSum=2.348;SOR=1.214;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,50:99:99:1380,0,1295:25,24,31,19
chr1	158227932	.	C	T	1987.76	PASS	AC=1;AF=0.5;AN=2;DP=140;FS=1.348;FractionInformativeReads=1;MQ=60;MQRankSum=0.652;QD=14.2;ReadPosRankSum=3.006;SOR=0.553;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,78:140:99:2016,0,1792:35,27,41,37
chr1	158260931	.	G	A	866.61	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0.818;FractionInformativeReads=1;MQ=60;MQRankSum=-0.728;QD=9.22;ReadPosRankSum=-3.104;SOR=0.828;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,34:94:99:895,0,1629:35,25,21,13
chr1	158261198	.	C	T	338.74	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=2.269;FractionInformativeReads=1;MQ=60;MQRankSum=-1.333;QD=13.55;ReadPosRankSum=-0.136;SOR=0.276;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:367,0,474:1,12,2,10
chr1	158299978	.	G	A	139.97	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.583;QD=5.38;ReadPosRankSum=0.972;SOR=0.947;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:168,0,509:6,12,2,6
chr1	158301118	.	G	T	707.11	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=1.085;FractionInformativeReads=1;MQ=60;MQRankSum=1.246;QD=12.63;ReadPosRankSum=-0.443;SOR=0.474;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:735,0,843:20,9,17,10
chr1	158322961	.	T	C	88.51	PASS	AC=2;AF=0.988;AN=2;DP=279;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.307;ReadPosRankSum=-0.361;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:195,15,0:0,0,5,0
chr1	158323176	.	C	T	727.98	PASS	AC=1;AF=0.5;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,40:91:99:859,0,1521:29,22,23,17
chr1	158323533	.	G	T	308.84	PASS	AC=1;AF=0.5;AN=2;DP=98;FractionInformativeReads=1;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:465,0,839:17,10,12,8
chr1	158323610	.	C	T	564.41	PASS	AC=1;AF=0.5;AN=2;DP=231;FractionInformativeReads=1;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:888,0,1345:27,17,22,13
chr1	158323733	.	T	G	1417.87	PASS	AC=1;AF=0.5;AN=2;DP=370;FractionInformativeReads=1;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,57:127:99:1385,0,1821:33,37,29,28
chr1	158323760	.	C	T	1267.91	PASS	AC=1;AF=0.5;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,52:124:99:1321,0,1876:33,39,27,25
chr1	158324425	.	A	G	2880.07	PASS	AC=1;AF=0.617;AN=2;DP=2918;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,42:88:99:1197,0,1314:23,23,17,25
chr1	158324609	.	C	T	379.64	PASS	AC=1;AF=0.5;AN=2;DP=104;FractionInformativeReads=1;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:467,0,494:5,11,7,11
chr1	158325409	.	A	G	408.2	PASS	AC=1;AF=0.5;AN=2;DP=73;FractionInformativeReads=1;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:405,0,462:7,7,2,10
chr1	158325765	.	C	T	1828.18	PASS	AC=1;AF=0.5;AN=2;DP=501;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,73:159:99:1659,0,2265:38,48,39,34
chr1	158326184	.	C	A	1132	PASS	AC=1;AF=0.5;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:890,0,889:18,16,17,14
chr1	158326447	.	CTT	CTTT,C,CT	1058.24	PASS	AC=0,0,1;AF=0.471,0.029,0.059;AN=2;DP=892;MQ=60;set=variant-variant5-variant6-variant9-variant13-variant15-variant20-variant25-variant27-variant30-variant31-variant33-variant34-variant37-variant39-variant41-variant43	GT:DP:GQ:SB	0/3:55:99:15,12,16,12
chr1	158326581	.	T	C	946.27	PASS	AC=1;AF=0.5;AN=2;DP=450;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:95,86:181:99:2093,0,2334:54,41,47,39
chr1	158326645	.	G	A	2035.56	PASS	AC=1;AF=0.5;AN=2;DP=570;FractionInformativeReads=1;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,96:205:99:2500,0,2797:53,56,55,41
chr1	158326702	.	A	G	4620.36	PASS	AC=1;AF=0.5;AN=2;DP=775;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:145,138:283:99:5484,0,5761:82,63,82,56
chr1	158326706	.	A	G	4722.32	PASS	AC=1;AF=0.5;AN=2;DP=797;FractionInformativeReads=1;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:143,152:295:99:5636,0,5727:82,61,88,64
chr1	158327222	.	T	C	3259.92	PASS	AC=1;AF=0.5;AN=2;DP=895;FractionInformativeReads=1;MQ=60;set=variant13-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:162,150:312:99:3576,0,4147:76,86,70,80
chr1	158368315	.	G	A	1755.19	PASS	AC=1;AF=0.5;AN=2;DP=976;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant14-variant15-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,69:130:99:1713,0,1439:34,27,38,31
chr1	158368541	.	A	G	3950.03	PASS	AC=1;AF=0.583;AN=2;DP=3764;MQ=60;set=variant-variant5-variant6-variant9-variant13-variant14-variant15-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,73:143:99:2080,0,1837:35,35,34,39
chr1	158368846	.	T	C	2833.85	PASS	AC=1;AF=0.583;AN=2;DP=2594;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant13-variant14-variant15-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,57:121:99:1368,0,1577:30,34,27,30
chr1	158369319	.	C	A	486.75	PASS	AC=1;AF=0.587;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant13-variant14-variant15-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:262,0,160:1,5,2,7
chr1	158389208	.	G	GA	1089.29	PASS	AC=1;AF=0.579;AN=2;DP=454;MQ=60;set=variant3-variant5-variant11-variant13-variant15-variant16-variant17-variant21-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:282,0,194:4,5,3,9
chr1	158389630	.	G	C	268.71	PASS	AC=1;AF=0.609;AN=2;DP=406;FractionInformativeReads=1;set=variant-variant5-variant6-variant9-variant13-variant14-variant15-variant17-variant20-variant21-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:81:81,0,332:8,3,3,1
chr1	158389659	.	T	C	252.6	PASS	AC=1;AF=0.685;AN=2;DP=709;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,5:19:99:125,0,358:9,5,4,1
chr1	158390252	.	T	G	1683.78	PASS	AC=1;AF=0.685;AN=2;DP=4075;set=variant-variant3-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,74:161:99:1913,0,2198:45,42,41,33
chr1	158390501	.	G	A	2100.26	PASS	AC=1;AF=0.685;AN=2;DP=4692;set=variant-variant3-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,91:162:99:2334,0,1687:32,39,41,50
chr1	158390676	.	G	A	663.66	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.613;QD=10.06;ReadPosRankSum=-1.017;SOR=0.714;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:692,0,1006:20,19,14,13
chr1	158390834	.	C	A	703.92	PASS	AC=1;AF=0.685;AN=2;DP=1322;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:642,0,774:11,16,12,14
chr1	158435250	.	C	T	843.16	PASS	AC=2;AF=0.692;AN=2;DP=2043;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3243,312,0:0,0,68,36
chr1	158435278	.	G	A	1254.96	PASS	AC=2;AF=0.75;AN=2;DP=3259;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3922,395,0:0,0,80,52
chr1	158436299	.	T	C	5514.94	PASS	AC=2;AF=0.721;AN=2;DP=13955;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,387:387:99:11890,1158,0:0,0,184,203
chr1	158436354	.	AT	A	4662.5	PASS	AC=2;AF=0.742;AN=2;DP=10780;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,313:313:99:9550,941,0:0,0,144,169
chr1	158450238	.	G	A	2282.77	PASS	AC=1;AF=0.583;AN=2;DP=2728;FractionInformativeReads=1;set=variant-variant5-variant9-variant14-variant17-variant20-variant21-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,65:140:99:1899,0,2046:36,39,26,39
chr1	158450314	.	A	G	1883.16	PASS	AC=1;AF=0.667;AN=2;DP=4008;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,64:133:99:1681,0,1844:28,41,28,36
chr1	158450382	.	C	T	1134.68	PASS	AC=1;AF=0.596;AN=2;DP=2941;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant14-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,57:114:99:1604,0,1642:24,33,27,30
chr1	158507157	.	A	T	1974.63	PASS	AC=1;AF=0.662;AN=2;DP=3085;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,39:93:99:1486,0,2709:32,22,28,11
chr1	158507160	.	T	G	1971.64	PASS	AC=1;AF=0.662;AN=2;DP=3168;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,41:95:99:1514,0,2706:32,22,29,12
chr1	158507184	.	A	G	1623.52	PASS	AC=1;AF=0.6;AN=2;DP=3373;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,53:116:99:1266,0,1601:37,26,35,18
chr1	158507222	.	GA	G	1674.31	PASS	AC=1;AF=0.662;AN=2;DP=4352;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,60:135:99:1407,0,1878:38,37,32,28
chr1	158507398	.	G	T	109.98	PASS	AC=1;AF=0.667;AN=2;DP=757;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:354,0,287:1,7,3,8
chr1	158532295	.	G	C	203.44	PASS	AC=1;AF=0.603;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant14-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:273,0,191:6,1,7,0
chr1	158532405	.	T	G	973.59	PASS	AC=1;AF=0.603;AN=2;DP=1846;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant14-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,37:70:99:915,0,1044:27,6,23,14
chr1	158533140	.	A	G	1127.95	PASS	AC=1;AF=0.603;AN=2;DP=3218;FractionInformativeReads=1;set=variant-variant5-variant6-variant7-variant9-variant12-variant14-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,48:98:99:1194,0,1329:25,25,19,29
chr1	158533224	.	A	G	676.84	PASS	AC=1;AF=0.6;AN=2;DP=2395;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,36:80:99:1032,0,1211:22,22,17,19
chr1	158548642	.	G	C	430.02	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.979;QD=9.35;ReadPosRankSum=0.364;SOR=0.884;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,17:46:99:458,0,794:19,10,12,5
chr1	158549264	.	G	A	843.28	PASS	AC=1;AF=0.603;AN=2;DP=2159;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant14-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,38:71:99:978,0,873:18,15,21,17
chr1	158549420	.	C	T	934.64	PASS	AC=1;AF=0.603;AN=2;DP=2983;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant14-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,63:117:99:1695,0,1329:27,27,35,28
chr1	158549492	.	C	T	836.6	PASS	AC=1;AF=0.603;AN=2;DP=3245;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant14-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,74:141:99:2902,0,2772:34,33,37,37
chr1	158549511	.	A	G	756.81	PASS	AC=1;AF=0.603;AN=2;DP=3342;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant12-variant14-variant16-variant17-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,82:152:99:3062,0,2715:33,37,40,42
chr1	158576973	.	A	G	2479.78	PASS	AC=1;AF=0.5;AN=2;DP=592;MQ=60;set=variant17-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:91,100:191:99:2689,0,2352:38,53,50,50
chr1	158580477	.	A	G	2076.3	PASS	AC=2;AF=0.64;AN=2;DP=3197;MQ=60;set=variant-variant3-variant5-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3906,319,0:0,0,67,39
chr1	158580759	.	G	A	2907.31	PASS	AC=2;AF=0.688;AN=2;DP=8118;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,244:244:99:7715,731,0:0,0,120,124
chr1	158580778	.	A	G	2966.26	PASS	AC=1;AF=0.5;AN=2;DP=3245;MQ=60;set=variant-variant5-variant9-variant13-variant14-variant20-variant29-variant30-variant31-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:122,148:270:99:3722,0,3033:65,57,78,70
chr1	158580887	.	T	C	2403.12	PASS	AC=2;AF=0.64;AN=2;DP=4586;set=variant-variant3-variant5-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5758,522,0:0,0,83,91
chr1	158580921	.	GCACA	GCACACACACACACA,GCA,GCACACACACA,G,GCACACA,GCACACACACACACACA,GCGCACACA,GCACACACA,GCACACACACACA	1968.25	PASS	AC=0,0,1,0,0,0,0,1,0;AF=0.128,0.267,0.081,0.07,0.047,0.012,0.012,0.116,0.105;AN=2;DP=5568;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	8/3:63:80:0,0,22,41
chr1	158582646	.	T	C	956.74	PASS	AC=2;AF=0.688;AN=2;DP=3712;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3790,362,0:0,0,59,62
chr1	158584091	.	A	G	1125.18	PASS	AC=2;AF=0.688;AN=2;DP=1633;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1932,138,0:0,0,18,28
chr1	158584103	.	GA	GAA,GAAA,G	864.18	PASS	AC=2,0,0;AF=0.471,0.176,0.044;AN=2;DP=1670;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	1/1:43:99:0,0,15,28
chr1	158587390	.	C	T	1073.97	PASS	AC=2;AF=0.688;AN=2;DP=3022;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2857,275,0:0,0,58,34
chr1	158587784	.	T	G	501.06	PASS	AC=2;AF=1;AN=2;DP=1360;FS=0;MQ=60;MQRankSum=1.542;ReadPosRankSum=1.542;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:59:659,59,0:0,0,15,5
chr1	158587858	.	G	A	442.77	PASS	AC=1;AF=0.615;AN=2;DP=1298;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:484,0,560:12,10,10,8
chr1	158588146	.	G	A	97.25	PASS	AC=1;AF=0.8;AN=2;DP=64;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant17-variant25-variant27-variant28-variant29-variant31-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:30:115,0,30:0,1,1,3
chr1	158588916	.	C	G	260.37	PASS	AC=1;AF=0.603;AN=2;DP=637;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:306,0,179:3,3,7,2
chr1	158592935	.	G	A	1436.49	PASS	AC=1;AF=0.603;AN=2;DP=4201;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:89,65:154:99:1578,0,2166:44,45,31,34
chr1	158595824	.	T	C	598.46	PASS	AC=1;AF=0.615;AN=2;DP=798;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:544,0,530:14,4,15,4
chr1	158595842	.	C	A	686.66	PASS	AC=1;AF=0.615;AN=2;DP=1185;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:651,0,840:21,7,19,6
chr1	158596524	.	A	G	546.22	PASS	AC=1;AF=0.615;AN=2;DP=745;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:589,0,453:12,3,14,6
chr1	158597507	.	G	C	1164.56	PASS	AC=1;AF=0.615;AN=2;DP=1881;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:936,0,857:9,23,13,20
chr1	158606449	.	G	T	1347.87	PASS	AC=1;AF=0.603;AN=2;DP=3277;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,46:99:99:1183,0,1292:30,23,25,21
chr1	158607788	.	T	G	1494.46	PASS	AC=2;AF=1;AN=2;DP=1906;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1523,141,0:0,0,33,14
chr1	158607935	.	T	G	2028.73	PASS	AC=1;AF=0.545;AN=2;DP=1617;FractionInformativeReads=1;MQ=60;set=variant6-variant16-variant20-variant22-variant24-variant26-variant30-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,80:129:99:1875,0,1179:21,28,40,40
chr1	158609300	.	C	G	861.98	PASS	AC=1;AF=0.615;AN=2;DP=2181;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,40:77:99:1020,0,888:22,15,22,18
chr1	158612236	.	A	G	841.26	PASS	AC=2;AF=0.686;AN=2;DP=3087;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2086,222,0:0,0,42,32
chr1	158612548	.	T	A	579.73	PASS	AC=1;AF=0.545;AN=2;DP=381;FractionInformativeReads=1;MQ=60;set=variant6-variant16-variant20-variant22-variant24-variant26-variant30-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:464,0,384:9,4,13,1
chr1	158614198	.	C	T	805.06	PASS	AC=1;AF=0.603;AN=2;DP=2111;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,42:75:99:1075,0,974:11,22,16,26
chr1	158618223	.	C	T	205.39	PASS	AC=2;AF=0.672;AN=2;DP=1055;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1049,102,0:0,0,22,12
chr1	158618455	.	G	A	579.08	PASS	AC=1;AF=0.556;AN=2;DP=377;MQ=60;set=variant6-variant20-variant24-variant26-variant30-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,32:60:99:819,0,597:12,16,11,21
chr1	158619728	.	A	C	2741.21	PASS	AC=2;AF=0.989;AN=2;DP=4186;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2821,264,0:0,0,38,50
chr1	158619822	.	A	C	607.79	PASS	AC=2;AF=0.607;AN=2;DP=931;MQ=60;set=variant6-variant10-variant11-variant13-variant17-variant20-variant24-variant26-variant30-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2166,204,0:0,0,29,39
chr1	158623360	.	C	T	97.68	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:68:68,0,160:0,4,0,2
chr1	158624570	.	C	T	767.11	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=1.877;FractionInformativeReads=1;MQ=60;MQRankSum=-0.718;QD=9.71;ReadPosRankSum=-2.977;SOR=0.944;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,31:79:99:795,0,1316:23,25,13,18
chr1	158624764	.	G	C	123.14	PASS	AC=1;AF=0.5;AN=2;DP=51;FractionInformativeReads=1;MQ=60;set=variant10-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:393,0,286:3,7,4,9
chr1	158626378	.	C	T	1380.78	PASS	AC=2;AF=0.607;AN=2;DP=1544;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant11-variant13-variant17-variant20-variant24-variant26-variant30-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2966,285,0:0,0,53,42
chr1	158627216	.	T	C	70.45	PASS	AC=1;AF=0.5;AN=2;DP=37;FractionInformativeReads=1;MQ=60;set=variant10-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:232,0,193:5,0,6,1
chr1	158627315	.	T	C	610.84	PASS	AC=1;AF=0.5;AN=2;DP=167;FractionInformativeReads=1;MQ=60;set=variant10-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,25:55:99:655,0,819:19,11,13,12
chr1	158631106	.	G	C	2082.66	PASS	AC=1;AF=0.5;AN=2;DP=540;FractionInformativeReads=1;MQ=60;set=variant10-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:103,98:201:99:2492,0,2580:49,54,46,52
chr1	158631171	.	A	C	1796.28	PASS	AC=1;AF=0.545;AN=2;DP=1678;MQ=60;set=variant6-variant11-variant17-variant20-variant24-variant26-variant30-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,77:140:99:1861,0,1738:22,41,30,47
chr1	158632440	.	A	C	727.61	PASS	AC=1;AF=0.5;AN=2;DP=215;FractionInformativeReads=1;MQ=60;set=variant10-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,28:76:99:622,0,1126:28,20,18,10
chr1	158632531	.	T	C	1623.2	PASS	AC=1;AF=0.5;AN=2;DP=284;FractionInformativeReads=1;MQ=60;set=variant10-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,41:103:99:1122,0,1655:38,24,24,17
chr1	158632919	.	A	G	79.11	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.8;QD=5.65;ReadPosRankSum=-2.267;SOR=0.269;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:107,0,328:1,8,1,4
chr1	158636224	.	C	T	1009.22	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0.785;FractionInformativeReads=0.979;MQ=60;MQRankSum=-0.106;QD=10.74;ReadPosRankSum=-1.051;SOR=0.546;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,44:92:99:1037,0,1174:26,22,22,22
chr1	158637865	.	GAAA	GAA,G,GA,GAAAA	149.5	PASS	AC=1,1,0,0;AF=0.269,0.256,0.064,0.013;AN=2;DP=1106;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:27:99:0,2,7,18
chr1	158639601	.	A	G	1596.92	PASS	AC=2;AF=0.7;AN=2;DP=3254;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2289,212,0:0,0,31,40
chr1	158645762	.	A	G	33.92	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:62:62,0,289:7,2,3,1
chr1	158647495	.	A	T	3091.88	PASS	AC=2;AF=0.989;AN=2;DP=4278;MQ=60;MQRankSum=-1.285;ReadPosRankSum=1.176;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2557,255,0:0,0,47,38
chr1	158647522	.	A	G	1269.49	PASS	AC=1;AF=0.625;AN=2;DP=3050;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,51:93:99:1206,0,953:21,21,24,27
chr1	158647631	.	T	A	1124.6	PASS	AC=2;AF=0.989;AN=2;DP=1677;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1230,102,0:0,0,7,27
chr1	158647669	.	T	C	188.93	PASS	AC=1;AF=0.625;AN=2;DP=687;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:227,0,261:1,8,1,6
chr1	158648105	.	A	C	731.6	PASS	AC=1;AF=0.5;AN=2;DP=61;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,26:41:99:760,0,422:12,3,18,8
chr1	158654786	.	C	T	467.35	PASS	AC=2;AF=1;AN=2;DP=505;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:548,48,0:0,0,11,5
chr1	158654852	.	A	G	707.28	PASS	AC=1;AF=0.629;AN=2;DP=1504;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,33:59:99:827,0,756:19,7,22,11
chr1	158655036	.	G	A	6042.15	PASS	AC=2;AF=1;AN=2;DP=7051;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4250,415,0:0,0,63,76
chr1	158655162	.	C	A	2388.06	PASS	AC=2;AF=1;AN=2;DP=3612;FS=0;MQ=60;MQRankSum=-0.17;ReadPosRankSum=0.713;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2145,201,0:0,0,23,44
chr1	158656257	.	T	C	479.15	PASS	AC=1;AF=0.5;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,15:41:99:422,0,725:18,8,12,3
chr1	158656281	.	T	C	1859.38	PASS	AC=2;AF=1;AN=2;DP=2020;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1823,144,0:0,0,36,12
chr1	158656347	.	C	CAGAG,CAGAGAGAG	4289.09	PASS	AC=2,0;AF=0.989,0.011;AN=2;DP=4183;FS=0;set=Intersection	GT:DP:GQ:SB	1/1:62:99:0,0,42,20
chr1	158656432	.	G	GA,GAA,GGA	1680.96	PASS	AC=1,0,1;AF=0.613,0.016,0.048;AN=2;DP=6152;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:176:99:10,10,85,71
chr1	158656632	.	G	GA,GAA	1067.42	PASS	AC=1,0;AF=0.455,0.489;AN=2;DP=1004;MQ=60;set=Intersection	GT:DP:GQ:SB	0/1:25:99:1,9,3,12
chr1	158656640	.	ACC	A	302.82	PASS	AC=1;AF=0.5;AN=2;DP=60;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:199,0,465:3,12,1,9
chr1	158656641	.	C	A	861.09	PASS	AC=1;AF=0.955;AN=2;DP=829;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:357,0,199:1,9,3,12
chr1	158656642	.	C	CAAA	302.82	PASS	AC=1;AF=0.5;AN=2;DP=58;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:255,0,465:3,12,1,9
chr1	158656653	.	A	T	713.74	PASS	AC=2;AF=1;AN=2;DP=610;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:777,66,0:0,0,4,18
chr1	158669342	.	T	TGTTTG	34.59	PASS	AC=1;AF=0.638;AN=2;DP=519;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant24-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:234,0,1047:10,7,6,1
chr1	158669684	.	A	G	2066.71	PASS	AC=1;AF=0.5;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:84,81:165:99:2095,0,2175:44,40,39,42
chr1	158686856	.	C	T	447.39	PASS	AC=1;AF=0.5;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:476,0,544:14,5,14,3
chr1	158687009	.	C	T	1519.35	PASS	AC=1;AF=0.5;AN=2;DP=274;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:85,66:151:99:1548,0,2240:48,37,34,32
chr1	158687119	.	C	T	1772.29	PASS	AC=1;AF=0.5;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:72,66:138:99:1801,0,2010:33,39,33,33
chr1	158687163	.	G	A	1529.54	PASS	AC=2;AF=0.63;AN=2;DP=3132;MQ=60;set=variant-variant3-variant6-variant8-variant10-variant11-variant13-variant15-variant16-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4583,408,0:0,0,69,67
chr1	158687224	.	G	A	1311.85	PASS	AC=1;AF=0.619;AN=2;DP=2922;MQ=60;set=variant-variant3-variant6-variant8-variant11-variant13-variant15-variant16-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,72:146:99:1790,0,1989:39,35,42,30
chr1	158687477	.	T	G	2048.34	PASS	AC=1;AF=0.5;AN=2;DP=276;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,76:149:99:2077,0,1802:36,37,36,40
chr1	158687896	.	C	T	892.36	PASS	AC=1;AF=0.525;AN=2;DP=1849;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant12-variant14-variant18-variant19-variant26-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,37:95:99:855,0,1490:28,30,13,24
chr1	158724504	.	G	A	3829.1	PASS	AC=1;AF=0.5;AN=2;DP=988;MQ=60;set=variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:160,177:337:99:4579,0,3934:98,62,107,70
chr1	158724750	.	C	T	2732.32	PASS	AC=1;AF=0.5;AN=2;DP=652;FractionInformativeReads=1;MQ=60;set=variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:138,96:234:99:2580,0,3917:52,86,38,58
chr1	158724844	.	G	A	1584.09	PASS	AC=1;AF=0.5;AN=2;DP=455;MQ=60;set=variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:77,89:166:99:2271,0,2107:37,40,43,46
chr1	158724965	.	T	C	2053.69	PASS	AC=1;AF=0.5;AN=2;DP=500;FractionInformativeReads=1;MQ=60;set=variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:106,72:178:99:1805,0,2897:53,53,34,38
chr1	158724988	.	A	G	2183.9	PASS	AC=1;AF=0.5;AN=2;DP=533;FractionInformativeReads=1;MQ=60;set=variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:106,68:174:99:1667,0,3032:55,51,33,35
chr1	158725006	.	C	T	2158.66	PASS	AC=1;AF=0.5;AN=2;DP=536;MQ=60;set=variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:109,64:173:99:1515,0,3182:56,53,34,30
chr1	158725194	.	T	C	2726	PASS	AC=1;AF=0.5;AN=2;DP=652;FractionInformativeReads=1;MQ=60;set=variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:106,104:210:99:2661,0,2836:56,50,54,50
chr1	158725237	.	C	T	2906.25	PASS	AC=1;AF=0.5;AN=2;DP=750;FractionInformativeReads=1;MQ=60;set=variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:133,106:239:99:2602,0,3648:69,64,53,53
chr1	158725301	.	G	A	3923.04	PASS	AC=1;AF=0.5;AN=2;DP=1368;MQ=60;set=variant14-variant24-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:144,93:237:99:3360,0,5690:71,73,46,47
chr1	158725310	.	A	T	3901.14	PASS	AC=1;AF=0.5;AN=2;DP=726;FractionInformativeReads=1;MQ=60;set=variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:144,90:234:99:3335,0,5703:71,73,43,47
chr1	158725345	.	G	A	2349.56	PASS	AC=1;AF=0.5;AN=2;DP=623;MQ=60;set=variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:120,81:201:99:1982,0,3189:52,68,36,45
chr1	158725387	.	A	G	1817.02	PASS	AC=1;AF=0.5;AN=2;DP=311;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:95,68:163:99:1845,0,2811:37,58,29,39
chr1	158725564	.	A	G	1594.11	PASS	AC=1;AF=0.5;AN=2;DP=393;FractionInformativeReads=1;MQ=60;set=variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,66:135:99:1690,0,1668:32,37,28,38
chr1	158725721	.	T	C	164.22	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:177,0,464:1,10,0,5
chr1	158725722	.	G	A	148.61	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=0;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:177,0,464:1,9,0,5
chr1	158725733	.	A	G	71.21	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:189,0,103:2,4,0,5
chr1	158735281	.	G	C	166.48	PASS	AC=2;AF=0.638;AN=2;DP=289;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant11-variant13-variant14-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:401,33,0:0,0,9,2
chr1	158735595	.	C	T	1870.34	PASS	AC=2;AF=0.813;AN=2;DP=7365;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4898,460,0:0,0,85,69
chr1	158735691	.	T	C	1771.48	PASS	AC=2;AF=0.813;AN=2;DP=7917;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5394,483,0:0,0,78,83
chr1	158735740	.	A	G	1594.3	PASS	AC=2;AF=0.813;AN=2;DP=7388;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:5270,503,0:0,0,76,92
chr1	158735892	.	A	G	1123.03	PASS	AC=2;AF=0.813;AN=2;DP=4335;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3497,318,0:0,0,49,57
chr1	158736215	.	G	A	2927.37	PASS	AC=2;AF=0.92;AN=2;DP=5559;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4013,388,0:0,0,68,62
chr1	158736445	.	C	T	923.58	PASS	AC=1;AF=0.591;AN=2;DP=2121;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant11-variant13-variant14-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,41:100:99:930,0,1529:27,32,19,22
chr1	158736517	.	A	T	514.45	PASS	AC=1;AF=0.591;AN=2;DP=979;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant11-variant13-variant14-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:597,0,536:4,15,7,16
chr1	158746336	.	T	C	369.34	PASS	AC=1;AF=0.5;AN=2;DP=191;MQ=60;set=variant6-variant8-variant12-variant13-variant16-variant17-variant21-variant24-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:283,0,253:7,1,8,0
chr1	158746678	.	T	C	1280.11	PASS	AC=1;AF=0.5;AN=2;DP=432;FractionInformativeReads=1;MQ=60;set=variant13-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,71:145:99:1952,0,1878:32,42,33,38
chr1	158746847	.	A	G	770.47	PASS	AC=1;AF=0.5;AN=2;DP=324;FractionInformativeReads=1;MQ=60;set=variant13-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,36:75:99:1078,0,1214:25,14,17,19
chr1	158812882	.	G	A	450.1	PASS	AC=2;AF=1;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;QD=28.13;SOR=1.244;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:478,48,0:0,0,10,6
chr1	158909164	.	C	A	2376.71	PASS	AC=2;AF=0.779;AN=2;DP=2180;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2218,173,0:0,0,39,19
chr1	158913525	.	A	G	1950.08	PASS	AC=2;AF=0.966;AN=2;DP=1581;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1339,105,0:0,0,24,11
chr1	158913532	.	C	T	1943.51	PASS	AC=1;AF=0.685;AN=2;DP=1063;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant26-variant27-variant28-variant29-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:417,0,493:13,5,11,7
chr1	158943295	.	TCACACA	TCACACACACA,TCACACACA,TCA,TCACA,T	527.17	PASS	AC=1,0,1,0,0;AF=0.14,0.674,0.081,0.012,0.012;AN=2;DP=671;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/1:15:99:0,0,14,1
chr1	158943339	.	G	A	521.77	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.45;QD=11.86;ReadPosRankSum=-1.19;SOR=0.877;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:550,0,608:17,7,15,5
chr1	158943382	.	C	A	1019.9	PASS	AC=1;AF=0.536;AN=2;DP=1461;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant10-variant14-variant16-variant20-variant23-variant24-variant26-variant27-variant28-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,54:99:99:1412,0,1174:28,17,36,18
chr1	158946830	.	C	CT	514.19	PASS	AC=2;AF=0.965;AN=2;DP=974;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:406,42,0:0,0,7,7
chr1	158979874	.	C	T	624.37	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=1.096;FractionInformativeReads=1;MQ=60;MQRankSum=0.184;QD=12.49;ReadPosRankSum=1.369;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:653,0,648:11,15,12,12
chr1	158979950	.	A	G	240.92	PASS	AC=1;AF=0.5;AN=2;DP=402;MQ=60;set=variant9-variant14-variant15-variant23-variant26-variant27-variant28-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:395,0,419:4,12,7,10
chr1	158984322	.	G	A	454.48	PASS	AC=1;AF=0.5;AN=2;DP=184;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant26-variant28-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:343,0,376:10,1,9,1
chr1	158985652	.	T	C	585.22	PASS	AC=1;AF=0.5;AN=2;DP=572;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant15-variant26-variant28-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,33:59:99:810,0,494:14,12,13,20
chr1	158986477	.	G	C	5689.27	PASS	AC=1;AF=0.786;AN=2;DP=6054;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,82:159:99:1960,0,1903:44,33,43,39
chr1	158987941	.	A	G	906.91	PASS	AC=1;AF=0.805;AN=2;DP=1021;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:386,0,418:10,5,9,5
chr1	159002222	.	A	G	825.42	PASS	AC=1;AF=0.857;AN=2;DP=1243;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:723,0,514:14,1,18,1
chr1	159002301	.	T	C	2128.8	PASS	AC=1;AF=0.857;AN=2;DP=4829;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,66:105:99:1777,0,819:25,14,38,28
chr1	159002377	.	C	A	2913.52	PASS	AC=1;AF=0.857;AN=2;DP=7438;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,88:150:99:2199,0,1543:29,33,39,49
chr1	159002389	.	T	A	2762.21	PASS	AC=1;AF=0.857;AN=2;DP=7036;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,71:124:99:1857,0,1375:25,28,29,42
chr1	159032255	.	G	T	1502.35	PASS	AC=2;AF=0.905;AN=2;DP=2470;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1599,144,0:0,0,34,14
chr1	159035656	.	C	T	616.5	PASS	AC=1;AF=0.5;AN=2;DP=87;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,17:43:99:551,0,799:20,6,15,2
chr1	159162024	.	G	C	523.67	PASS	AC=1;AF=0.563;AN=2;DP=822;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant13-variant16-variant17-variant22-variant24-variant27-variant31-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,15:48:99:400,0,977:12,21,4,11
chr1	159163843	.	C	G	1336.29	PASS	AC=1;AF=0.5;AN=2;DP=100;FS=2.659;FractionInformativeReads=1;MQ=60;MQRankSum=0.128;QD=13.36;ReadPosRankSum=0.871;SOR=0.435;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,56:100:99:1365,0,972:17,27,26,30
chr1	159169463	.	C	T	1720.03	PASS	AC=1;AF=0.553;AN=2;DP=3863;MQ=60;set=variant-variant3-variant5-variant8-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant27-variant31-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:99,92:191:99:2254,0,2476:54,45,50,42
chr1	159169641	.	T	C	1398.35	PASS	AC=2;AF=0.744;AN=2;DP=4632;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4290,386,0:0,0,53,76
chr1	159170353	.	TC	T	561.85	PASS	AC=1;AF=0.667;AN=2;DP=763;set=variant2-variant3-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant26-variant27-variant28-variant31-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:445,0,757:16,5,11,4
chr1	159170986	.	T	G	483.06	PASS	AC=1;AF=0.677;AN=2;DP=600;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant33-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:218,0,274:7,6,5,4
chr1	159174683	.	T	C	2985.78	PASS	AC=1;AF=0.625;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant10-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,37:64:99:1139,0,620:15,12,21,16
chr1	159174824	.	G	C	5715.86	PASS	AC=2;AF=1;AN=2;DP=8688;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,188:189:99:5459,555,0:1,0,93,95
chr1	159174920	.	C	T	3599.03	PASS	AC=1;AF=0.611;AN=2;DP=2736;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant16-variant17-variant18-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,50:93:99:1474,0,1112:11,32,16,34
chr1	159175004	.	CT	C	1643.22	PASS	AC=2;AF=0.814;AN=2;DP=1876;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1481,129,0:0,0,15,28
chr1	159175354	.	G	A	5261.06	PASS	AC=2;AF=0.695;AN=2;DP=10966;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,254:254:99:7715,758,0:0,0,133,121
chr1	159175527	.	G	A	872.75	PASS	AC=1;AF=0.538;AN=2;DP=2788;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant16-variant17-variant22-variant23-variant27-variant30-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:124,108:232:99:2428,0,2900:53,71,47,61
chr1	159259680	.	T	G	37.69	PASS	AC=1;AF=0.696;AN=2;DP=411;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant33-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:337,0,476:2,11,2,8
chr1	159272060	.	T	C	799.33	PASS	AC=1;AF=0.587;AN=2;DP=1643;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,37:76:99:748,0,955:22,17,20,17
chr1	159320979	.	G	A	1556.04	PASS	AC=1;AF=0.69;AN=2;DP=3403;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,56:124:99:1270,0,1598:33,35,23,33
chr1	159336315	.	G	A	3930.89	PASS	AC=1;AF=0.625;AN=2;DP=493;FractionInformativeReads=1;MQ=60;set=variant10-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,60:114:99:1533,0,1449:24,30,26,34
chr1	159402290	.	C	T	2226.97	PASS	AC=1;AF=0.5;AN=2;DP=181;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.79;QD=12.3;ReadPosRankSum=-1.545;SOR=0.712;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:98,83:181:99:2255,0,2893:43,55,36,47
chr1	159402584	.	G	GT	4436.21	PASS	AC=2;AF=0.965;AN=2;DP=5779;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4715,400,0:0,0,58,75
chr1	159402695	.	A	C	1568.95	PASS	AC=2;AF=0.965;AN=2;DP=2364;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2074,177,0:0,0,20,39
chr1	159409196	.	T	C	1466.9	PASS	AC=2;AF=0.965;AN=2;DP=2092;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1429,126,0:0,0,30,12
chr1	159409533	.	G	A	12692.7	PASS	AC=2;AF=0.965;AN=2;DP=16125;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,391:391:99:11581,1169,0:0,0,197,194
chr1	159409734	.	G	T	7205.62	PASS	AC=2;AF=0.989;AN=2;DP=9097;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,252:252:99:8068,755,0:0,0,119,133
chr1	159409857	.	A	G	4955.12	PASS	AC=2;AF=0.819;AN=2;DP=5624;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:5134,458,0:0,0,60,93
chr1	159505297	.	C	T	4735.51	PASS	AC=1;AF=0.813;AN=2;DP=7453;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,106:200:99:2761,0,2422:53,41,58,48
chr1	159558258	.	A	G	1938.82	PASS	AC=2;AF=0.833;AN=2;DP=6699;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4719,440,0:0,0,80,67
chr1	159682233	.	C	T	866.53	PASS	AC=1;AF=0.609;AN=2;DP=1799;MQ=60;set=variant2-variant5-variant6-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant28-variant29-variant31-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,32:75:99:867,0,1262:18,25,15,17
chr1	159683099	.	G	T	1256.16	PASS	AC=1;AF=0.5;AN=2;DP=191;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,55:94:99:1484,0,1073:16,23,30,25
chr1	159683438	.	C	G	1667.05	PASS	AC=1;AF=0.5;AN=2;DP=550;FractionInformativeReads=1;MQ=60;set=variant6-variant25-variant29-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,37:101:99:973,0,1570:37,27,20,17
chr1	159684047	.	CCACACACACACA	CCACACACACACACA,CCACA,C,CCA,CCACACACA,CCACACACACACACACA,CCACACACACA	220.97	PASS	AC=0,1,0,0,0,0,1;AF=0.122,0.488,0.049,0.098,0.012,0.024,0.012;AN=2;DP=1262;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	2/7:21:99:1,1,10,9
chr1	159684121	.	CT	C	90.6	PASS	AC=1;AF=0.5;AN=2;DP=1704;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant9-variant10-variant11-filterInvariant14-variant15-variant16-variant18-filterInvariant19-variant20-filterInvariant21-filterInvariant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-filterInvariant35-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:494,0,414:13,10,16,12
chr1	159778363	.	C	A	1551.53	PASS	AC=1;AF=0.556;AN=2;DP=373;MQ=60;set=variant3-variant6-variant8-variant16-variant21-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:527,0,695:4,17,2,16
chr1	159778983	.	T	C	1412.22	PASS	AC=1;AF=0.542;AN=2;DP=3751;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant21-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,69:138:99:1769,0,1674:35,34,34,35
chr1	159783148	.	C	T	56.69	PASS	AC=1;AF=0.521;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant21-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:103,0,270:7,1,3,1
chr1	159783412	.	A	G	1420.33	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=0.644;FractionInformativeReads=1;MQ=60;MQRankSum=-0.286;QD=10.68;ReadPosRankSum=1.605;SOR=0.796;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:69,64:133:99:1449,0,1753:33,36,29,35
chr1	159783486	.	G	A	3018.64	PASS	AC=1;AF=0.583;AN=2;DP=533;MQ=60;set=variant3-variant6-variant16-variant21-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,44:75:99:1249,0,904:14,17,18,26
chr1	159783559	.	C	T	393.76	PASS	AC=1;AF=0.542;AN=2;DP=1003;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant21-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,28:41:99:718,0,298:5,8,10,18
chr1	159784174	.	A	G	1666.43	PASS	AC=1;AF=0.556;AN=2;DP=295;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant16-variant21-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,23:31:99:614,0,231:2,6,8,15
chr1	159785284	.	C	G	3280.67	PASS	AC=2;AF=0.78;AN=2;DP=10308;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,286:286:99:8581,858,0:0,0,156,130
chr1	159785370	.	T	C	9848.73	PASS	AC=1;AF=0.538;AN=2;DP=3561;MQ=60;set=variant3-variant6-variant8-variant16-variant21-variant24-variant27-variant34-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,152:266:99:4077,0,2791:49,65,61,91
chr1	159785425	.	A	G	2113.45	PASS	AC=1;AF=0.542;AN=2;DP=4729;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant21-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,104:174:99:2888,0,1903:26,44,44,60
chr1	159799599	.	C	CA	4106.1	PASS	AC=2;AF=0.872;AN=2;DP=5517;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3449,310,0:0,0,73,27
chr1	159804282	.	C	G	205.05	PASS	AC=1;AF=0.521;AN=2;DP=518;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:451,0,420:11,3,10,6
chr1	159804653	.	T	C	3046.81	PASS	AC=1;AF=0.531;AN=2;DP=1041;MQ=60;set=variant3-variant6-variant10-variant16-variant17-variant20-variant21-variant25-variant28-variant29-variant30-variant31-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,31:77:99:705,0,1312:22,24,17,14
chr1	159805731	.	C	T	1807.37	PASS	AC=1;AF=0.531;AN=2;DP=759;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant10-variant16-variant17-variant20-variant21-variant25-variant28-variant29-variant30-variant31-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,17:43:99:498,0,737:11,15,6,11
chr1	159806249	.	C	G	1521.5	PASS	AC=1;AF=0.531;AN=2;DP=540;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant10-variant16-variant17-variant20-variant21-variant25-variant28-variant29-variant30-variant31-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,17:26:99:490,0,334:5,4,11,6
chr1	159807969	.	A	T	368.65	PASS	AC=1;AF=0.523;AN=2;DP=421;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant15-variant16-variant17-variant20-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:347,0,195:2,6,5,9
chr1	159824651	.	G	A	1348.66	PASS	AC=1;AF=0.5;AN=2;DP=242;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:65,66:131:99:1730,0,1796:30,35,36,30
chr1	159824967	.	G	C	3498.3	PASS	AC=2;AF=0.898;AN=2;DP=5083;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2685,276,0:0,0,48,44
chr1	159825061	.	G	C	3078.59	PASS	AC=2;AF=0.656;AN=2;DP=4003;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2792,267,0:0,0,42,47
chr1	159826561	.	CCA	CCACA,C	282.6	PASS	AC=1,0;AF=0.534,0.034;AN=2;DP=608;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant30-variant31-filterInvariant33-variant35-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:23:39:0,3,1,19
chr1	159827416	.	C	A	308.6	PASS	AC=1;AF=0.558;AN=2;DP=847;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant18-variant19-variant20-variant21-variant23-variant28-variant30-variant31-variant33-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:437,0,414:10,3,10,5
chr1	159827456	.	A	G	1626.58	PASS	AC=1;AF=0.798;AN=2;DP=1970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,35:58:99:1375,0,903:15,8,23,12
chr1	159827475	.	G	A	934.64	PASS	AC=1;AF=0.558;AN=2;DP=1541;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant18-variant19-variant20-variant21-variant23-variant28-variant30-variant31-variant33-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,43:70:99:1621,0,1024:19,8,29,14
chr1	159828128	.	A	G	1318.27	PASS	AC=2;AF=0.886;AN=2;DP=3005;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2211,192,0:0,0,30,34
chr1	159828310	.	A	T	329.49	PASS	AC=1;AF=0.5;AN=2;DP=144;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant25-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,17:28:99:466,0,291:5,6,8,9
chr1	159828746	.	G	A	722.63	PASS	AC=1;AF=0.793;AN=2;DP=1588;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:571,0,615:6,15,6,14
chr1	159842088	.	T	A	1607.92	PASS	AC=2;AF=0.849;AN=2;DP=2246;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1402,131,0:0,0,30,14
chr1	159842684	.	C	A	1011.21	PASS	AC=1;AF=0.571;AN=2;DP=657;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant19-variant21-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,59:112:99:1291,0,1286:30,23,29,30
chr1	159854251	.	T	C	1103.48	PASS	AC=1;AF=0.5;AN=2;DP=999;MQ=60;set=variant2-variant4-variant12-variant25-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,71:138:99:1686,0,1447:31,36,34,37
chr1	159854392	.	C	A	1076.84	PASS	AC=2;AF=0.849;AN=2;DP=1628;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:86:873,86,0:0,0,9,20
chr1	159858290	.	T	A	1355.9	PASS	AC=1;AF=0.5;AN=2;DP=649;set=variant2-variant4-variant12-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,49:118:99:1088,0,1778:28,41,20,29
chr1	159860488	.	A	G	1113.43	PASS	AC=1;AF=0.5;AN=2;DP=725;MQ=60;set=variant2-variant4-variant12-variant25-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,40:87:99:938,0,1126:17,30,16,24
chr1	159863028	.	C	T	2145.72	PASS	AC=1;AF=0.571;AN=2;DP=1214;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant19-variant21-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:79,87:166:99:2159,0,1787:35,44,35,52
chr1	159869548	.	C	T	112.7	PASS	AC=1;AF=0.5;AN=2;DP=165;FractionInformativeReads=1;set=variant2-variant4-variant12-variant25-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:410,0,253:7,1,11,2
chr1	159889686	.	G	A	1034.35	PASS	AC=2;AF=0.689;AN=2;DP=3422;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2557,248,0:0,0,33,50
chr1	159894146	.	C	T	563.25	PASS	AC=2;AF=0.955;AN=2;DP=1380;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1117,101,0:0,0,26,8
chr1	159895261	.	G	A	1607.26	PASS	AC=1;AF=0.5;AN=2;DP=958;MQ=60;set=variant7-variant11-variant13-variant24-variant29-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,66:136:99:1544,0,1617:37,33,38,28
chr1	159896866	.	TCA	TCACACA,TCACA,TCACACACACACA,T	376.13	PASS	AC=2,0,0,0;AF=0.357,0.143,0.071,0.143;AN=2;DP=77;set=variant7-variant24-variant25-variant34-variant35-variant41-variant44	GT:DP:GQ:SB	1/1:7:21:0,0,6,1
chr1	159896889	.	G	C	188.66	PASS	AC=2;AF=0.583;AN=2;DP=92;set=variant7-variant21-variant24-variant29-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:189,18,0:0,0,5,1
chr1	159897126	.	C	T	2081.08	PASS	AC=2;AF=0.672;AN=2;DP=1758;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2145,147,0:0,0,32,17
chr1	159897132	.	T	C	587.49	PASS	AC=2;AF=0.545;AN=2;DP=609;MQ=60;set=variant3-variant7-variant11-variant13-variant21-variant24-variant28-variant29-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:2084,141,0:0,0,30,17
chr1	159897327	.	C	T	1227.21	PASS	AC=2;AF=0.559;AN=2;DP=1797;MQ=60;set=variant3-variant5-variant6-variant7-variant11-variant13-variant15-variant21-variant22-variant24-variant25-variant28-variant29-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2354,240,0:0,0,37,44
chr1	159897638	.	T	C	1045.66	PASS	AC=1;AF=0.5;AN=2;DP=600;MQ=60;set=variant7-variant11-variant13-variant24-variant29-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:916,0,748:18,12,19,14
chr1	159897681	.	TAA	TA,T	1861.76	PASS	AC=2,0;AF=0.636,0.352;AN=2;DP=4367;set=Intersection	GT:DP:GQ:SB	1/1:51:99:1,1,25,24
chr1	159897754	.	C	T	1715.59	PASS	AC=2;AF=0.545;AN=2;DP=757;MQ=60;set=variant3-variant7-variant11-variant13-variant21-variant24-variant28-variant29-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1763,150,0:0,0,26,24
chr1	159898913	.	A	G	2627.92	PASS	AC=2;AF=0.672;AN=2;DP=1764;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1786,144,0:0,0,26,22
chr1	159902520	.	G	C	897.73	PASS	AC=2;AF=0.563;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant11-variant13-variant21-variant28-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1932,132,0:0,0,13,31
chr1	159902526	.	T	C	2242.06	PASS	AC=2;AF=0.661;AN=2;DP=1190;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1848,126,0:0,0,12,29
chr1	159904539	.	A	G	3028.61	PASS	AC=2;AF=0.563;AN=2;DP=1610;MQ=60;set=variant3-variant7-variant11-variant13-variant21-variant28-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,173:174:99:5364,481,0:1,0,68,105
chr1	159906156	.	A	G	2637.61	PASS	AC=1;AF=0.579;AN=2;DP=1440;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant11-variant12-variant16-variant19-variant20-variant21-variant23-variant24-variant28-variant29-variant35-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,26:73:99:634,0,1244:28,19,18,8
chr1	159906849	.	A	G	512.27	PASS	AC=2;AF=0.714;AN=2;DP=394;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant32-variant35-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:488,36,0:0,0,1,11
chr1	159907362	.	A	G	1006.77	PASS	AC=2;AF=0.69;AN=2;DP=616;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant21-variant23-variant24-variant28-variant29-variant35-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:93:1365,93,0:0,0,18,12
chr1	159907367	.	T	C	1091.44	PASS	AC=2;AF=0.69;AN=2;DP=657;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant21-variant23-variant24-variant28-variant29-variant35-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1450,102,0:0,0,21,13
chr1	159912533	.	AGTGT	A,AGT	829.52	PASS	AC=0,1;AF=0.576,0.258;AN=2;DP=788;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:20:99:7,4,8,1
chr1	159912665	.	A	T	1264.74	PASS	AC=1;AF=0.5;AN=2;DP=749;set=variant3-variant7-variant8-variant21-variant25-variant28-variant29-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,34:80:99:778,0,1400:30,16,21,13
chr1	159922369	.	C	T	1751.65	PASS	AC=2;AF=0.93;AN=2;DP=3406;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2615,247,0:0,0,39,44
chr1	159922458	.	A	G	625.6	PASS	AC=2;AF=0.559;AN=2;DP=865;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant21-variant28-variant32-variant34-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1858,189,0:0,0,28,35
chr1	159923111	.	T	G	2758.73	PASS	AC=2;AF=0.93;AN=2;DP=4717;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3952,381,0:0,0,79,48
chr1	159923234	.	C	T	1425.39	PASS	AC=1;AF=0.5;AN=2;DP=504;FractionInformativeReads=1;MQ=60;set=variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:87,97:184:99:2480,0,2236:40,47,52,45
chr1	159998440	.	G	A	5820.61	PASS	AC=1;AF=0.5;AN=2;DP=4921;MQ=60;set=variant16-variant18-variant19-variant22-variant27-variant28-variant29-variant31-variant32-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:193,193:386:99:5103,0,5035:87,106,90,103
chr1	159998579	.	TA	T	9155.13	PASS	AC=2;AF=0.768;AN=2;DP=13987;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,336:336:99:9389,1008,0:0,0,177,159
chr1	160009143	.	G	C	322.84	PASS	AC=2;AF=1;AN=2;DP=526;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:618,45,0:0,0,10,5
chr1	160009163	.	GACACACACACACAC	GACACAC,GACAC,GACACACACACAC,GACACACACAC,GACACACACACACACAC,GACACACACACACACACACAC,GACACACAC,G,GAC	93.39	PASS	AC=1,0,0,1,0,0,0,0,0;AF=0.313,0.047,0.047,0.156,0.063,0.016,0.031,0.063,0.016;AN=2;DP=441;set=variant-variant3-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/4:11:99:0,0,8,3
chr1	160009419	.	A	C	244.61	PASS	AC=2;AF=0.841;AN=2;DP=1385;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1462,126,0:0,0,16,26
chr1	160009685	.	A	C	486.26	PASS	AC=1;AF=0.5;AN=2;DP=110;FractionInformativeReads=1;MQ=60;set=variant2-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:758,0,720:16,14,13,14
chr1	160051276	.	G	C	127.61	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=1.585;FractionInformativeReads=1;MQ=60;MQRankSum=0.589;QD=4.4;ReadPosRankSum=0.684;SOR=0.385;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,9:29:99:156,0,525:13,7,5,4
chr1	160054894	.	G	T	113.02	PASS	AC=1;AF=0.595;AN=2;DP=210;MQ=60;set=variant-variant4-variant7-variant9-variant12-variant14-variant17-variant19-variant20-variant23-variant26-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:48:200,0,48:2,1,4,4
chr1	160057670	.	T	C	522.45	PASS	AC=1;AF=0.5;AN=2;DP=102;FractionInformativeReads=1;MQ=60;set=variant2-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:599,0,684:18,11,16,9
chr1	160057964	.	C	T	471.99	PASS	AC=1;AF=0.583;AN=2;DP=1696;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:693,0,1002:19,19,12,15
chr1	160058000	.	C	T	547.81	PASS	AC=1;AF=0.5;AN=2;DP=555;MQ=60;set=variant11-variant15-variant21-variant24-variant29-variant31-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,21:58:99:507,0,1074:17,20,11,10
chr1	160058190	.	C	T	855.56	PASS	AC=1;AF=0.5;AN=2;DP=117;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,35:58:99:940,0,482:13,10,20,15
chr1	160059760	.	G	C	364.55	PASS	AC=1;AF=0.5;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant12-variant23-variant26-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:342,0,514:14,3,6,8
chr1	160061853	.	G	A	312.92	PASS	AC=1;AF=0.5;AN=2;DP=278;MQ=60;set=variant11-variant15-variant21-variant24-variant29-variant31-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:159,0,341:8,5,4,4
chr1	160061934	.	T	C	621.71	PASS	AC=1;AF=0.5;AN=2;DP=901;MQ=60;set=variant3-variant6-variant11-variant12-variant15-variant21-variant23-variant24-variant26-variant29-variant31-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:609,0,1132:18,9,11,5
chr1	160061959	.	C	T	774.95	PASS	AC=1;AF=0.5;AN=2;DP=1140;MQ=60;set=variant3-variant6-variant11-variant12-variant15-variant21-variant23-variant24-variant26-variant29-variant31-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,30:61:99:960,0,1236:23,8,21,9
chr1	160062472	.	C	T	2599.13	PASS	AC=1;AF=0.5;AN=2;DP=2728;set=variant3-variant6-variant11-variant12-variant15-variant21-variant23-variant24-variant26-variant29-variant31-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:79,60:139:99:1367,0,2072:40,39,33,27
chr1	160062727	.	A	G	2801.15	PASS	AC=1;AF=0.5;AN=2;DP=2500;MQ=60;set=variant3-variant6-variant11-variant12-variant15-variant21-variant23-variant24-variant26-variant29-variant31-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,75:129:99:1983,0,1283:31,23,43,32
chr1	160063151	.	T	A	1367.48	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.621;QD=12.66;ReadPosRankSum=0.485;SOR=0.747;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:53,55:108:99:1396,0,1327:17,36,17,38
chr1	160068068	.	A	C	807.12	PASS	AC=1;AF=0.641;AN=2;DP=2274;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,38:74:99:1048,0,818:24,12,25,13
chr1	160085868	.	A	C	297.42	PASS	AC=1;AF=0.722;AN=2;DP=1252;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:472,0,759:9,17,2,14
chr1	160085955	.	A	C	94.66	PASS	AC=1;AF=0.538;AN=2;DP=273;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:360,0,225:0,6,1,8
chr1	160090674	.	T	C	1052.02	PASS	AC=2;AF=1;AN=2;DP=2030;FS=0;MQ=60;MQRankSum=0.933;ReadPosRankSum=1.599;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1378,114,0:0,0,28,10
chr1	160090681	.	CCCTT	C	698.45	PASS	AC=1;AF=0.81;AN=2;DP=2144;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,9:43:99:276,0,1372:24,10,7,2
chr1	160093222	.	C	T	3016.19	PASS	AC=2;AF=0.989;AN=2;DP=8150;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,190:190:99:6001,569,0:0,0,80,110
chr1	160093648	.	G	A	1341.73	PASS	AC=1;AF=0.5;AN=2;DP=1126;MQ=60;set=variant11-variant19-variant20-variant21-variant24-variant25-variant29-variant31-variant33-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,31:75:99:932,0,1239:23,21,12,19
chr1	160093911	.	T	C	2743.33	PASS	AC=2;AF=0.989;AN=2;DP=4686;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:4733,322,0:0,0,42,64
chr1	160093927	.	T	A	1459.54	PASS	AC=2;AF=0.621;AN=2;DP=2861;MQ=60;set=variant4-variant5-variant7-variant9-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:4565,310,0:0,0,41,61
chr1	160094343	.	T	C	842.12	PASS	AC=1;AF=0.556;AN=2;DP=589;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant11-variant13-variant15-variant16-variant18-variant21-variant22-variant24-variant27-variant28-variant32-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:417,0,319:5,9,7,10
chr1	160094458	.	A	G	237.04	PASS	AC=2;AF=1;AN=2;DP=332;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:357,24,0:0,0,1,7
chr1	160097315	.	C	A	357.23	PASS	AC=1;AF=0.5;AN=2;DP=387;FractionInformativeReads=1;MQ=60;set=variant11-variant19-variant20-variant21-variant24-variant25-variant29-variant33-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:577,0,542:13,4,16,2
chr1	160097666	.	G	A	2138.59	PASS	AC=1;AF=0.821;AN=2;DP=3736;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,31:78:99:827,0,1401:20,27,13,18
chr1	160098927	.	A	AG	149.73	PASS	AC=1;AF=0.845;AN=2;DP=659;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,18:26:99:558,0,222:3,5,8,10
chr1	160112392	.	G	A	130.62	PASS	AC=2;AF=0.6;AN=2;DP=42;FractionInformativeReads=1;set=variant3-variant20-variant25-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:94,9,0:0,0,1,2
chr1	160121450	.	G	T	1355.8	PASS	AC=1;AF=0.5;AN=2;DP=843;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant19-variant20-variant25-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,73:124:99:1944,0,1113:25,26,40,33
chr1	160124875	.	G	A	2123.7	PASS	AC=2;AF=0.788;AN=2;DP=3343;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2294,225,0:0,0,43,32
chr1	160128671	.	G	A	500.5	PASS	AC=1;AF=0.658;AN=2;DP=1618;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,17:40:99:460,0,661:17,6,11,6
chr1	160128994	.	C	T	1046.66	PASS	AC=2;AF=0.929;AN=2;DP=1492;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1681,123,0:0,0,11,30
chr1	160134205	.	C	T	810.02	PASS	AC=1;AF=0.713;AN=2;DP=2754;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,41:79:99:1330,0,1099:11,27,8,33
chr1	160137300	.	A	C	838.44	PASS	AC=2;AF=0.685;AN=2;DP=1787;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant23-variant24-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1788,159,0:0,0,14,39
chr1	160140998	.	G	A	554.76	PASS	AC=1;AF=0.655;AN=2;DP=378;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant22-variant24-variant26-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,15:22:99:460,0,187:5,2,11,4
chr1	160141196	.	C	T	3666.67	PASS	AC=1;AF=0.977;AN=2;DP=4304;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:51,53:104:99:1224,0,1256:27,24,29,24
chr1	160141636	.	C	T	1342.01	PASS	AC=1;AF=0.737;AN=2;DP=2555;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:858,0,764:9,18,9,23
chr1	160143514	.	T	G	1126.21	PASS	AC=1;AF=0.5;AN=2;DP=363;FractionInformativeReads=1;MQ=60;set=variant19-variant22-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,45:82:99:1414,0,1033:9,28,9,36
chr1	160145634	.	C	T	636.73	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=3.304;FractionInformativeReads=1;MQ=60;MQRankSum=-0.955;QD=19.9;ReadPosRankSum=1.199;SOR=0.299;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,22:32:99:665,0,226:7,3,12,10
chr1	160145688	.	C	G	449.7	PASS	AC=2;AF=0.663;AN=2;DP=2571;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1560,141,0:0,0,26,21
chr1	160145699	.	C	T	334.13	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=4.455;FractionInformativeReads=1;MQ=60;MQRankSum=-1.418;QD=6.82;ReadPosRankSum=-1.311;SOR=1.519;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,16:49:99:362,0,989:17,16,11,5
chr1	160146494	.	C	G	520.69	PASS	AC=1;AF=0.5;AN=2;DP=275;FractionInformativeReads=1;set=variant8-variant17-variant26-variant32-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,10:35:99:243,0,701:13,12,4,6
chr1	160147080	.	C	A	231.65	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.643;QD=11.58;ReadPosRankSum=-0.416;SOR=0.399;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:260,0,271:7,3,6,4
chr1	160147502	.	T	G	690.82	PASS	AC=2;AF=0.628;AN=2;DP=4233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3429,347,0:0,0,60,56
chr1	160151421	.	G	C	604.12	PASS	AC=1;AF=0.553;AN=2;DP=1150;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant21-variant27-variant29-variant31-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,25:65:99:525,0,1070:26,14,15,10
chr1	160151450	.	T	C	2302.92	PASS	AC=2;AF=0.671;AN=2;DP=3055;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2511,260,0:0,0,51,36
chr1	160151624	.	G	GC	2874.1	PASS	AC=2;AF=0.661;AN=2;DP=3903;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant21-variant22-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3515,316,0:0,0,52,53
chr1	160152351	.	G	A	560.87	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0;FractionInformativeReads=0.987;MQ=60;MQRankSum=-1.457;QD=7.48;ReadPosRankSum=-1.632;SOR=0.743;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,31:74:99:589,0,996:23,20,17,14
chr1	160152382	.	C	T	1015.23	PASS	AC=1;AF=0.542;AN=2;DP=977;FractionInformativeReads=1;MQ=60;set=variant-variant14-variant18-variant23-variant24-variant28-variant30-variant31-variant33-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,45:92:99:1098,0,1115:25,22,27,18
chr1	160156027	.	C	G	506.48	PASS	AC=1;AF=0.568;AN=2;DP=1038;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant19-variant21-variant22-variant27-variant31-variant33-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,34:59:99:854,0,620:16,9,19,15
chr1	160162371	.	C	A	282.1	PASS	AC=1;AF=0.5;AN=2;DP=36;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:262,0,253:7,3,7,1
chr1	160163446	.	C	T	267.8	PASS	AC=1;AF=0.667;AN=2;DP=1045;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,19:35:99:599,0,498:14,2,16,3
chr1	160163509	.	C	T	955.24	PASS	AC=1;AF=0.64;AN=2;DP=2160;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant12-variant14-variant15-variant18-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:991,0,992:25,10,24,13
chr1	160164668	.	T	C	441.31	PASS	AC=2;AF=0.989;AN=2;DP=725;FS=0;MQ=60;MQRankSum=0.684;ReadPosRankSum=0.322;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:450,39,0:0,0,10,3
chr1	160165442	.	GC	G,GCC,GCCC	96.09	PASS	AC=1,0,0;AF=0.115,0.346,0.077;AN=2;DP=341;MQ=60;set=variant2-variant4-variant6-variant12-variant13-variant25-variant32-variant35-variant36-filterInvariant37-variant39-variant41-filterInvariant44	GT:DP:GQ:SB	0/1:22:99:4,12,0,6
chr1	160167314	.	T	A	2630.18	PASS	AC=1;AF=0.5;AN=2;DP=212;FS=1.054;FractionInformativeReads=1;MQ=60;MQRankSum=-1.229;QD=12.41;ReadPosRankSum=2.237;SOR=0.618;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:105,107:212:99:2658,0,2381:58,47,57,50
chr1	160167536	.	T	C	283.3	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=3.468;FractionInformativeReads=1;MQ=60;MQRankSum=0.228;QD=14.16;ReadPosRankSum=-0.532;SOR=0.132;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:312,0,381:0,11,1,8
chr1	160168368	.	G	A	1680.07	PASS	AC=1;AF=0.648;AN=2;DP=3654;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant14-variant15-variant18-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,65:148:99:1610,0,2200:55,28,42,23
chr1	160169473	.	T	C	811	PASS	AC=2;AF=1;AN=2;DP=1205;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:1098,98,0:0,0,26,7
chr1	160175180	.	G	A	608.16	PASS	AC=1;AF=0.5;AN=2;DP=133;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:515,0,526:12,8,13,4
chr1	160178356	.	A	G	2430.06	PASS	AC=2;AF=1;AN=2;DP=4199;FS=0;MQ=60;MQRankSum=1.417;ReadPosRankSum=1.638;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3297,326,0:0,0,63,46
chr1	160187173	.	A	G	1388.28	PASS	AC=2;AF=0.886;AN=2;DP=2037;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1488,141,0:0,0,26,21
chr1	160194161	.	C	T	359.89	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=6.237;FractionInformativeReads=1;MQ=60;MQRankSum=-0.819;QD=6.92;ReadPosRankSum=-0.858;SOR=0.424;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,17:52:99:388,0,1106:23,12,8,9
chr1	160236470	.	T	A	1185.07	PASS	AC=1;AF=0.735;AN=2;DP=5551;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,70:137:99:1682,0,1646:36,31,36,34
chr1	160246988	.	C	A	574.59	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=3.812;FractionInformativeReads=1;MQ=60;MQRankSum=2.79;QD=9.58;ReadPosRankSum=0.868;SOR=1.287;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,21:60:99:603,0,1332:18,21,7,14
chr1	160251792	.	A	G	1653.38	PASS	AC=1;AF=0.735;AN=2;DP=4362;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,49:121:99:1164,0,1842:42,30,30,19
chr1	160251859	.	C	T	1822.7	PASS	AC=1;AF=0.5;AN=2;DP=182;FS=1.833;FractionInformativeReads=0.995;MQ=60;MQRankSum=1.31;QD=10.01;ReadPosRankSum=-0.48;SOR=0.652;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,82:181:99:1851,0,2437:47,52,42,40
chr1	160259384	.	CT	C,CTT	93.63	PASS	AC=0,1;AF=0.813,0.031;AN=2;DP=130;set=variant2-variant7-variant9-variant10-variant11-variant14-variant16-variant17-variant19-variant22-variant24-variant29-variant31-variant33-variant41-variant42	GT:DP:GQ:SB	0/2:6:8:1,0,2,3
chr1	160262229	.	G	A	471.68	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=0.939;FractionInformativeReads=1;MQ=60;MQRankSum=-0.863;QD=6.46;ReadPosRankSum=-0.523;SOR=0.813;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,24:73:99:500,0,1219:29,20,15,9
chr1	160262678	.	T	C	72.21	PASS	AC=1;AF=0.735;AN=2;DP=539;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:209,0,273:6,4,6,2
chr1	160263124	.	C	T	2020.88	PASS	AC=1;AF=0.735;AN=2;DP=6065;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,100:169:99:2541,0,1705:33,36,51,49
chr1	160275434	.	A	G	6087.68	PASS	AC=2;AF=0.955;AN=2;DP=9082;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,214:214:99:6843,640,0:0,0,102,112
chr1	160302068	.	C	T	293.38	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=1.68;FractionInformativeReads=1;MQ=60;MQRankSum=-1.506;QD=12.22;ReadPosRankSum=0.985;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:322,0,300:8,5,8,3
chr1	160302202	.	G	C	1287.35	PASS	AC=1;AF=0.5;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,64:136:99:1500,0,1840:41,31,36,28
chr1	160302298	.	T	C	897.27	PASS	AC=1;AF=0.5;AN=2;DP=185;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,42:104:99:1033,0,1519:29,33,18,24
chr1	160302444	.	G	A	237.41	PASS	AC=1;AF=0.735;AN=2;DP=659;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:396,0,480:2,12,3,11
chr1	160303288	.	C	T	485.75	PASS	AC=1;AF=0.625;AN=2;DP=198;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,32:45:99:977,0,397:12,1,23,9
chr1	160303416	.	G	A	1927.33	PASS	AC=1;AF=0.712;AN=2;DP=5146;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:77,77:154:99:1808,0,1875:41,36,36,41
chr1	160303507	.	C	T	1286.81	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=3.607;FractionInformativeReads=0.988;MQ=60;MQRankSum=0.473;QD=16.09;ReadPosRankSum=0.036;SOR=0.358;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,50:79:99:1315,0,795:6,23,15,35
chr1	160304896	.	A	T	187.39	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.055;QD=11.02;ReadPosRankSum=0.653;SOR=0.963;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:216,0,397:10,1,6,0
chr1	160305151	.	T	C	677.66	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.576;QD=14.12;ReadPosRankSum=3.404;SOR=0.749;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:706,0,622:7,15,8,18
chr1	160309664	.	T	G	1318.41	PASS	AC=1;AF=0.735;AN=2;DP=3208;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,38:92:99:821,0,1374:32,22,22,16
chr1	160313330	.	C	G	682.4	PASS	AC=1;AF=0.5;AN=2;DP=403;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant20-variant24-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,35:69:99:1055,0,883:13,21,17,18
chr1	160318940	.	A	G	1101.86	PASS	AC=1;AF=0.7;AN=2;DP=2845;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,41:74:99:949,0,882:14,19,17,24
chr1	160319191	.	C	T	870.61	PASS	AC=1;AF=0.5;AN=2;DP=150;FractionInformativeReads=1;MQ=60;set=variant9-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,32:76:99:757,0,1029:22,22,19,13
chr1	160320938	.	C	T	282.17	PASS	AC=1;AF=0.5;AN=2;DP=173;MQ=60;set=variant15-variant20-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,16:45:99:379,0,952:24,5,11,5
chr1	160321065	.	A	G	1828.91	PASS	AC=1;AF=0.5;AN=2;DP=843;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant20-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,65:131:99:1610,0,1814:31,35,34,31
chr1	160321499	.	C	T	980.41	PASS	AC=1;AF=0.5;AN=2;DP=378;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,47:94:99:1073,0,1057:25,22,24,23
chr1	160322199	.	C	T	633.33	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=1.386;FractionInformativeReads=1;MQ=60;MQRankSum=0.763;QD=16.67;ReadPosRankSum=-2.319;SOR=0.997;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:662,0,482:5,12,5,16
chr1	160322763	.	A	G	1268.65	PASS	AC=1;AF=0.5;AN=2;DP=131;FS=0.657;FractionInformativeReads=1;MQ=60;MQRankSum=-0.152;QD=9.68;ReadPosRankSum=-1.658;SOR=0.804;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:76,55:131:99:1297,0,1925:38,38,26,29
chr1	160323903	.	C	G	921.45	PASS	AC=1;AF=0.5;AN=2;DP=248;MQ=60;set=variant15-variant20-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,44:85:99:1093,0,1140:28,13,29,15
chr1	160325921	.	T	C	140.46	PASS	AC=1;AF=0.5;AN=2;DP=151;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant15-variant20-variant24-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:265,0,361:6,4,5,3
chr1	160327820	.	G	C	644.24	PASS	AC=1;AF=0.5;AN=2;DP=373;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant15-variant20-variant24-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,20:50:99:544,0,878:23,7,15,5
chr1	160328755	.	GTTA	G	1954.44	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=2.513;FractionInformativeReads=1;MQ=60;MQRankSum=-0.094;QD=17.93;ReadPosRankSum=0.209;SOR=1.015;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,52:109:99:1992,0,2834:31,26,32,20
chr1	160340198	.	A	C	34.68	PASS	AC=1;AF=0.5;AN=2;DP=69;FractionInformativeReads=1;set=variant5-variant7-variant15-variant22-variant24-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:117,0,281:0,3,3,0
chr1	160340204	.	CGA	C	40.69	PASS	AC=1;AF=0.5;AN=2;DP=58;FractionInformativeReads=1;set=variant7-variant22-variant24-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:111,0,423:1,3,3,0
chr1	160340206	.	A	ACCCCCCCC,ACCCCC,ACCCCCC	40.69	PASS	AC=0,0,1;AF=0.1,0.1,0.3;AN=2;DP=48;FractionInformativeReads=1;set=variant7-variant22-variant24-variant41-variant42	GT:DP:GQ:SB	0/3:7:99:1,3,3,0
chr1	160340212	.	A	C	32.1	PASS	AC=1;AF=0.5;AN=2;DP=85;FractionInformativeReads=1;set=variant5-variant7-variant15-variant22-variant24-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:111,0,423:2,3,3,0
chr1	160341876	.	G	A	1921.07	PASS	AC=1;AF=0.712;AN=2;DP=1915;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,41:100:99:861,0,1485:31,28,19,22
chr1	160342015	.	T	G	366.22	PASS	AC=1;AF=0.743;AN=2;DP=1335;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,15:39:99:309,0,688:10,14,7,8
chr1	160342162	.	C	CTTAT	122.16	PASS	AC=1;AF=0.833;AN=2;DP=92;MQ=60;set=variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant19-variant24-variant29-variant31-variant33-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:153,0,264:1,4,2,2
chr1	160395276	.	C	CT,CTT	352.49	PASS	AC=1,0;AF=0.676,0.014;AN=2;DP=1700;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:51:99:19,11,13,8
chr1	160397254	.	G	T	3597.32	PASS	AC=2;AF=1;AN=2;DP=5103;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2595,281,0:0,0,42,52
chr1	160455109	.	A	T	112.45	PASS	AC=2;AF=0.964;AN=2;DP=334;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:99,12,0:0,0,2,2
chr1	160455855	.	A	T	39.19	PASS	AC=1;AF=0.5;AN=2;DP=18;FractionInformativeReads=1;MQ=60;set=variant2-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:96:199,0,96:1,2,2,4
chr1	160458782	.	A	G	1743.56	PASS	AC=2;AF=0.793;AN=2;DP=4672;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4349,384,0:0,0,78,50
chr1	160466356	.	A	G	172.58	PASS	AC=1;AF=0.577;AN=2;DP=201;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant11-variant12-variant15-variant21-variant23-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:263,0,252:4,6,1,7
chr1	160493178	.	AT	A,ATT	100.75	PASS	AC=0,1;AF=0.559,0.059;AN=2;DP=309;MQ=60;set=variant-variant3-variant9-variant15-variant17-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant40-variant41	GT:DP:GQ:SB	0/2:11:93:1,4,1,5
chr1	160512224	.	G	A	9813.49	PASS	AC=1;AF=0.821;AN=2;DP=12640;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:145,140:285:99:3537,0,3953:67,78,67,73
chr1	160512616	.	G	A	14591.2	PASS	AC=1;AF=0.821;AN=2;DP=17674;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:188,200:388:99:4611,0,4803:92,96,98,102
chr1	160512813	.	T	C	8329.3	PASS	AC=2;AF=0.849;AN=2;DP=10962;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,273:273:99:8502,817,0:0,0,110,163
chr1	160513173	.	G	A	2369.08	PASS	AC=1;AF=0.583;AN=2;DP=5068;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:98,91:189:99:2495,0,5301:53,45,53,38
chr1	160513183	.	A	G	9074.39	PASS	AC=1;AF=0.826;AN=2;DP=9505;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,102:202:99:3719,0,2479:55,45,54,48
chr1	160513392	.	T	TTTATTATTA,TTTATTATTATTA,TTTTTTATTATTA	202.83	PASS	AC=1,0,0;AF=0.796,0.093,0.019;AN=2;DP=771;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:15:99:5,4,2,4
chr1	160513456	.	G	A	1958.51	PASS	AC=1;AF=0.814;AN=2;DP=2591;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,47:87:99:1321,0,1073:25,15,34,13
chr1	160513626	.	G	A	10862.5	PASS	AC=1;AF=0.802;AN=2;DP=12955;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:163,136:299:99:3568,0,3856:80,83,76,60
chr1	160513935	.	CTTTTT	C,CT,CTT,CTTT,CTTTT	80.41	PASS	AC=0,0,0,2,0;AF=0.042,0.063,0.271,0.25,0.063;AN=2;DP=336;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant15-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	4/4:3:9:0,0,0,3
chr1	160514226	.	C	A	463.38	PASS	AC=1;AF=0.583;AN=2;DP=900;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,11:39:99:230,0,781:19,9,8,3
chr1	160514859	.	G	A	406.71	PASS	AC=1;AF=0.814;AN=2;DP=1211;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,15:41:99:328,0,743:13,13,6,9
chr1	160514955	.	T	C	660.48	PASS	AC=1;AF=0.826;AN=2;DP=1342;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:219,0,398:4,7,4,4
chr1	160514987	.	C	A	230.68	PASS	AC=1;AF=0.587;AN=2;DP=684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:105,0,246:1,5,2,1
chr1	160515266	.	G	A	2230.33	PASS	AC=1;AF=0.821;AN=2;DP=3544;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,44:84:99:965,0,912:17,23,20,24
chr1	160516049	.	A	G	66.22	PASS	AC=1;AF=0.829;AN=2;DP=553;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:195,0,137:4,2,5,2
chr1	160516262	.	A	G	535.63	PASS	AC=1;AF=0.583;AN=2;DP=1006;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,32:42:99:789,0,284:6,4,18,14
chr1	160516308	.	A	G	1147.09	PASS	AC=1;AF=0.814;AN=2;DP=2102;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,36:51:99:930,0,404:11,4,21,15
chr1	160516542	.	A	T	807.76	PASS	AC=1;AF=0.583;AN=2;DP=1315;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,36:68:99:1035,0,766:13,19,19,17
chr1	160516640	.	C	G	782.93	PASS	AC=1;AF=0.583;AN=2;DP=1405;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,26:49:99:817,0,623:14,9,15,11
chr1	160516659	.	C	G	714.64	PASS	AC=1;AF=0.58;AN=2;DP=1519;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:892,0,747:17,11,16,13
chr1	160517214	.	A	G	291.3	PASS	AC=1;AF=0.58;AN=2;DP=1017;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,15:42:99:372,0,715:14,13,7,8
chr1	160517479	.	C	G	228.48	PASS	AC=1;AF=0.58;AN=2;DP=1407;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:628,0,741:11,16,12,12
chr1	160517516	.	A	G	797.89	PASS	AC=1;AF=0.5;AN=2;DP=113;FS=0;FractionInformativeReads=1;MQ=60;set=variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:757,0,722:14,11,13,12
chr1	160517692	.	C	T	393.98	PASS	AC=1;AF=0.58;AN=2;DP=1755;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,52:99:99:1217,0,1070:21,26,27,25
chr1	160518115	.	T	C	1174.89	PASS	AC=1;AF=0.5;AN=2;DP=206;FractionInformativeReads=1;MQ=60;set=variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,54:112:99:1292,0,1427:25,33,23,31
chr1	160518207	.	G	A	235.12	PASS	AC=1;AF=0.5;AN=2;DP=44;FractionInformativeReads=1;MQ=60;set=variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:317,0,498:0,13,4,9
chr1	160519812	.	C	CA	695.54	PASS	AC=2;AF=0.62;AN=2;DP=1636;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2743,198,0:0,0,22,44
chr1	160519815	.	C	CT	695.69	PASS	AC=2;AF=0.62;AN=2;DP=1497;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2744,198,0:0,0,18,39
chr1	160577890	.	T	G	229.75	PASS	AC=1;AF=0.826;AN=2;DP=613;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:217,0,221:5,3,6,0
chr1	160578004	.	T	A	140.91	PASS	AC=1;AF=0.6;AN=2;DP=903;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant32-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:509,0,402:9,6,9,8
chr1	160578141	.	C	T	341.09	PASS	AC=1;AF=0.6;AN=2;DP=1344;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant22-variant26-variant29-variant31-variant32-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,41:65:99:1005,0,661:14,10,18,23
chr1	160578541	.	C	CA	1697.91	PASS	AC=2;AF=0.849;AN=2;DP=2309;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1694,126,0:0,0,19,23
chr1	160582422	.	C	T	574.3	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=1.271;FractionInformativeReads=1;MQ=60;MQRankSum=0.29;QD=14.36;ReadPosRankSum=1.946;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:603,0,382:5,11,9,15
chr1	160585554	.	C	G	1985.27	PASS	AC=1;AF=0.989;AN=2;DP=4157;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:44,50:94:99:1275,0,1185:26,18,25,25
chr1	160589456	.	C	T	1478.79	PASS	AC=1;AF=0.5;AN=2;DP=140;FS=3.072;FractionInformativeReads=1;MQ=60;MQRankSum=0.652;QD=10.56;ReadPosRankSum=1.212;SOR=1.003;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:75,65:140:99:1507,0,2023:41,34,40,25
chr1	160604172	.	T	G	62.99	PASS	AC=2;AF=0.986;AN=2;DP=162;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.198;ReadPosRankSum=-0.922;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:312,21,0:0,0,7,0
chr1	160604863	.	A	T	314.96	PASS	AC=1;AF=0.75;AN=2;DP=622;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:306,0,190:0,5,2,6
chr1	160616703	.	G	T	2108.79	PASS	AC=1;AF=0.6;AN=2;DP=1796;MQ=60;set=variant8-variant9-variant20-variant21-variant29-variant30-variant32-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:91,100:191:99:2507,0,2226:43,48,45,55
chr1	160648549	.	C	T	251.9	PASS	AC=2;AF=0.841;AN=2;DP=517;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:279,24,0:0,0,6,2
chr1	160650792	.	GC	G	126.16	PASS	AC=1;AF=0.917;AN=2;DP=561;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:124,0,222:6,2,4,1
chr1	160650913	.	A	G	1536.21	PASS	AC=2;AF=0.989;AN=2;DP=2728;MQ=60;MQRankSum=-0.944;ReadPosRankSum=-0.087;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1954,174,0:0,0,39,19
chr1	160653299	.	G	A	1514.93	PASS	AC=1;AF=0.579;AN=2;DP=1864;set=variant2-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant16-variant21-variant23-variant24-variant28-variant29-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,37:99:99:1022,0,1587:38,24,27,10
chr1	160653308	.	CT	C,CTT	973.88	PASS	AC=1,0;AF=0.455,0.045;AN=2;DP=5109;set=Intersection	GT:DP:GQ:SB	0/1:110:99:35,17,33,25
chr1	160653453	.	G	A	3479.17	PASS	AC=1;AF=0.5;AN=2;DP=558;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:159,132:291:99:3025,0,3748:78,81,67,65
chr1	160654786	.	G	A	1837.38	PASS	AC=1;AF=0.556;AN=2;DP=2701;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant16-variant21-variant24-variant28-variant29-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:81,77:158:99:2946,0,4597:40,41,41,36
chr1	160654792	.	C	T	2886.72	PASS	AC=1;AF=0.5;AN=2;DP=160;FS=1.24;FractionInformativeReads=1;MQ=60;MQRankSum=1.563;QD=18.04;ReadPosRankSum=-0.634;SOR=0.662;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:84,76:160:99:2915,0,4657:40,44,39,37
chr1	160681653	.	G	GA	1038.26	PASS	AC=1;AF=0.533;AN=2;DP=772;MQ=60;set=variant3-variant6-variant7-variant9-variant13-variant16-variant21-variant28-variant29-variant30-variant33-filterInvariant35-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:415,0,609:12,17,14,9
chr1	160681831	.	C	T	151.67	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.359;QD=8.43;ReadPosRankSum=2.083;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:180,0,272:4,7,2,5
chr1	160681863	.	G	T	81.49	PASS	AC=1;AF=0.674;AN=2;DP=161;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant13-variant14-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant32-variant35-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:137,0,194:2,5,1,4
chr1	160709057	.	G	T	1520.33	PASS	AC=1;AF=0.5;AN=2;DP=136;FS=1.348;FractionInformativeReads=1;MQ=60;MQRankSum=-0.986;QD=11.18;ReadPosRankSum=-1.484;SOR=0.829;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,63:136:99:1549,0,2022:37,36,34,29
chr1	160717693	.	G	GT	185.1	PASS	AC=2;AF=0.833;AN=2;DP=229;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:254,24,0:0,0,8,0
chr1	160717872	.	T	G	2209.87	PASS	AC=2;AF=1;AN=2;DP=3005;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3020,279,0:0,0,56,37
chr1	160722064	.	A	G	978.7	PASS	AC=2;AF=1;AN=2;DP=1029;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:734,54,0:0,0,4,14
chr1	160722856	.	C	T	1175.74	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=1.96;FractionInformativeReads=1;MQ=60;MQRankSum=-0.964;QD=15.47;ReadPosRankSum=-1.384;SOR=0.478;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,48:76:99:1204,0,669:17,11,26,22
chr1	160723256	.	A	G	4997.43	PASS	AC=2;AF=0.763;AN=2;DP=5413;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4739,431,0:0,0,53,91
chr1	160723517	.	A	G	918.41	PASS	AC=2;AF=0.763;AN=2;DP=1433;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1029,99,0:0,0,17,16
chr1	160723957	.	T	C	242.07	PASS	AC=1;AF=0.568;AN=2;DP=238;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant21-variant24-variant25-variant26-variant28-variant30-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:445,0,230:0,7,5,11
chr1	160724305	.	T	C	653.38	PASS	AC=2;AF=1;AN=2;DP=1456;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1247,108,0:0,0,24,12
chr1	160766179	.	C	CT	806.66	PASS	AC=2;AF=0.756;AN=2;DP=1345;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1116,114,0:0,0,13,25
chr1	160771761	.	C	A	1375.29	PASS	AC=1;AF=0.543;AN=2;DP=4180;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant16-variant17-variant20-variant24-variant25-variant26-variant28-variant30-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,104:196:99:2536,0,2573:36,56,41,63
chr1	160787900	.	G	A	1952.37	PASS	AC=1;AF=0.5;AN=2;DP=152;FS=3.9;FractionInformativeReads=1;MQ=60;MQRankSum=1.641;QD=12.84;ReadPosRankSum=-2.257;SOR=1.04;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:79,73:152:99:1981,0,1886:45,34,47,26
chr1	160788131	.	T	C	825.92	PASS	AC=1;AF=0.545;AN=2;DP=1048;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant16-variant17-variant20-variant24-variant25-variant26-variant28-variant30-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:378,0,714:5,18,4,11
chr1	160789196	.	A	C	3821.02	PASS	AC=2;AF=1;AN=2;DP=5331;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4129,404,0:0,0,50,85
chr1	160789308	.	C	T	530.03	PASS	AC=1;AF=0.721;AN=2;DP=680;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:405,0,420:0,11,4,9
chr1	160793442	.	A	G	4013.83	PASS	AC=1;AF=0.625;AN=2;DP=4573;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,73:146:99:1775,0,1767:41,32,40,33
chr1	160793560	.	A	G	3171.71	PASS	AC=1;AF=0.621;AN=2;DP=4224;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,73:125:99:1865,0,1270:25,27,32,41
chr1	160793962	.	G	C	3134.57	PASS	AC=1;AF=0.625;AN=2;DP=3807;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,46:122:99:994,0,1951:45,31,27,19
chr1	160797323	.	T	G	468.49	PASS	AC=1;AF=0.65;AN=2;DP=462;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:382,0,165:5,1,10,2
chr1	160797514	.	C	G	3906.92	PASS	AC=1;AF=0.633;AN=2;DP=3418;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,74:129:99:1825,0,1216:29,26,34,40
chr1	160797684	.	A	G	2191.43	PASS	AC=1;AF=0.633;AN=2;DP=1776;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,24:56:99:587,0,904:14,18,13,11
chr1	160798126	.	A	G	746.96	PASS	AC=1;AF=0.633;AN=2;DP=713;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:322,0,498:0,13,0,9
chr1	160800480	.	T	C	1573.1	PASS	AC=2;AF=0.645;AN=2;DP=2033;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2326,207,0:0,0,37,32
chr1	160800559	.	A	G	689.68	PASS	AC=2;AF=0.568;AN=2;DP=1391;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant16-variant17-variant20-variant24-variant25-variant26-variant28-variant30-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2439,213,0:0,0,29,42
chr1	160803802	.	A	G	495.81	PASS	AC=1;AF=0.702;AN=2;DP=3998;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,34:73:99:855,0,995:23,16,22,12
chr1	160809003	.	G	A	387.59	PASS	AC=1;AF=0.688;AN=2;DP=742;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:385,0,368:0,10,1,10
chr1	160832212	.	A	G	142.7	PASS	AC=1;AF=0.529;AN=2;DP=572;MQ=60;set=variant2-variant4-variant7-variant9-variant10-variant13-variant14-variant15-variant19-variant25-variant27-variant31-variant35-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:429,0,578:14,8,12,3
chr1	160832528	.	G	A	1437.79	PASS	AC=1;AF=0.5;AN=2;DP=113;FS=1.501;FractionInformativeReads=1;MQ=60;MQRankSum=-1.124;QD=12.72;ReadPosRankSum=-0.246;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,63:113:99:1466,0,1251:25,25,29,34
chr1	160846284	.	T	G	310.29	PASS	AC=1;AF=0.75;AN=2;DP=883;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,6:23:99:158,0,452:12,5,4,2
chr1	160849030	.	T	A	70.45	PASS	AC=1;AF=0.75;AN=2;DP=817;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:365,0,362:10,3,10,1
chr1	160849060	.	G	A	193.9	PASS	AC=1;AF=0.75;AN=2;DP=1582;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:689,0,635:16,5,19,4
chr1	160849082	.	A	G	606.39	PASS	AC=2;AF=0.763;AN=2;DP=2491;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,70:71:99:2267,203,0:1,0,50,20
chr1	160849367	.	G	T	306.11	PASS	AC=1;AF=0.75;AN=2;DP=927;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,23:32:99:732,0,201:2,7,6,17
chr1	160849420	.	G	A	91.66	PASS	AC=1;AF=0.565;AN=2;DP=293;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,9:10:16:326,0,16:0,1,1,8
chr1	160850280	.	G	A	617.56	PASS	AC=2;AF=0.763;AN=2;DP=2170;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1266,128,0:0,0,27,16
chr1	160850936	.	T	C	436.59	PASS	AC=2;AF=0.763;AN=2;DP=7892;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,221:221:99:6715,662,0:0,0,122,99
chr1	160851594	.	GAAAAAAA	G,GAAAAAA	82.47	PASS	AC=1,0;AF=0.744,0.024;AN=2;DP=1069;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:16:99:3,0,11,2
chr1	160851619	.	A	G	294.37	PASS	AC=1;AF=0.75;AN=2;DP=1753;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:676,0,488:13,2,14,7
chr1	160851826	.	A	T	493.18	PASS	AC=1;AF=0.75;AN=2;DP=3658;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,43:84:99:1234,0,1087:17,24,23,20
chr1	160851894	.	G	A	889.94	PASS	AC=1;AF=0.763;AN=2;DP=4325;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,51:97:99:1323,0,1324:25,21,28,23
chr1	160852022	.	C	T	807.5	PASS	AC=1;AF=0.75;AN=2;DP=6430;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,75:149:99:1842,0,1833:34,40,35,40
chr1	160852046	.	T	C	760.58	PASS	AC=1;AF=0.75;AN=2;DP=5402;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,70:136:99:1705,0,1597:28,38,29,41
chr1	160853379	.	A	T	1212.31	PASS	AC=1;AF=0.5;AN=2;DP=104;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.339;QD=11.66;ReadPosRankSum=1.957;SOR=0.7;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:53,51:104:99:1241,0,1203:24,29,23,28
chr1	160854526	.	G	A	136.21	PASS	AC=2;AF=0.763;AN=2;DP=874;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:784,66,0:0,0,17,5
chr1	160854620	.	T	C	723.31	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.347;QD=10.19;ReadPosRankSum=-2.124;SOR=0.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,28:71:99:752,0,1131:28,15,18,10
chr1	160854698	.	C	T	2110.63	PASS	AC=1;AF=0.5;AN=2;DP=138;FS=0.641;FractionInformativeReads=1;MQ=60;MQRankSum=0.411;QD=15.29;ReadPosRankSum=0.082;SOR=0.795;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,57:138:99:2139,0,3277:42,39,31,26
chr1	160854703	.	T	C	2105.08	PASS	AC=1;AF=0.5;AN=2;DP=138;FS=1.365;FractionInformativeReads=1;MQ=60;MQRankSum=2.24;QD=15.25;ReadPosRankSum=0.381;SOR=0.85;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,57:138:99:2133,0,3305:41,40,31,26
chr1	160854749	.	T	C	1197.98	PASS	AC=1;AF=0.5;AN=2;DP=130;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.801;QD=9.22;ReadPosRankSum=1.744;SOR=0.74;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:75,55:130:99:1226,0,1850:35,40,25,30
chr1	160917902	.	T	C	804.76	PASS	AC=1;AF=0.6;AN=2;DP=1787;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,33:83:99:817,0,1251:20,30,10,23
chr1	160920809	.	A	G	747.31	PASS	AC=1;AF=0.676;AN=2;DP=4795;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,69:139:99:1697,0,1579:35,35,35,34
chr1	160920813	.	A	G	985.22	PASS	AC=2;AF=1;AN=2;DP=5780;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:5129,415,0:0,0,69,69
chr1	160920966	.	C	T	1595.06	PASS	AC=1;AF=0.676;AN=2;DP=3824;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,50:105:99:1390,0,1451:30,25,28,22
chr1	160921230	.	T	G	531.7	PASS	AC=1;AF=0.689;AN=2;DP=1146;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:499,0,516:1,14,1,13
chr1	160922596	.	C	T	266.93	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.184;QD=14.05;ReadPosRankSum=0.041;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:295,0,237:2,7,2,8
chr1	160922607	.	C	T	252.45	PASS	AC=1;AF=0.5;AN=2;DP=84;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant25-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:128,0,191:2,5,1,4
chr1	160924426	.	G	A	1162.24	PASS	AC=1;AF=0.5;AN=2;DP=964;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant11-variant20-variant21-variant24-variant27-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,63:115:99:1565,0,1430:21,31,32,31
chr1	160965526	.	G	A	247.29	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=1.822;FractionInformativeReads=1;MQ=60;MQRankSum=0.154;QD=8.24;ReadPosRankSum=0.99;SOR=0.297;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:276,0,682:16,4,7,3
chr1	160965537	.	TCACACA	TCACA,T,TCACACACA	1578.8	PASS	AC=1,0,1;AF=0.537,0.293,0.012;AN=2;DP=2490;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:32:99:0,0,24,8
chr1	160965718	.	A	C	2382.94	PASS	AC=1;AF=0.5;AN=2;DP=249;FS=2.189;FractionInformativeReads=1;MQ=60;MQRankSum=1.51;QD=9.57;ReadPosRankSum=-1.289;SOR=0.85;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:148,101:249:99:2411,0,3987:81,67,59,42
chr1	160967759	.	C	CT,CTT	346.44	PASS	AC=1,0;AF=0.661,0.032;AN=2;DP=893;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:16:96:4,6,1,5
chr1	160969008	.	T	TG	875.75	PASS	AC=1;AF=0.841;AN=2;DP=1735;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:548,0,649:18,6,16,5
chr1	160969585	.	C	T	1836.79	PASS	AC=2;AF=0.854;AN=2;DP=4727;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3783,355,0:0,0,72,47
chr1	160969611	.	T	G	1275.38	PASS	AC=1;AF=0.5;AN=2;DP=127;FS=0.67;FractionInformativeReads=1;MQ=60;MQRankSum=-1.641;QD=10.04;ReadPosRankSum=1.68;SOR=0.799;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,54:127:99:1304,0,1853:40,33,31,23
chr1	160970981	.	G	GA	713.33	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=1.128;FractionInformativeReads=0.959;MQ=60;MQRankSum=-1.866;QD=14.56;ReadPosRankSum=-1.866;SOR=0.518;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:751,0,842:9,16,9,13
chr1	160971146	.	A	G	2313.03	PASS	AC=1;AF=0.841;AN=2;DP=4475;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,56:88:99:1464,0,875:19,13,31,25
chr1	160990697	.	G	C	1321.65	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=0.773;FractionInformativeReads=1;MQ=60;MQRankSum=-0.841;QD=12.83;ReadPosRankSum=-1.408;SOR=0.588;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,51:103:99:1350,0,1433:35,17,33,18
chr1	160990875	.	T	C	3215.33	PASS	AC=1;AF=0.682;AN=2;DP=4915;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,59:122:99:2247,0,4032:28,35,20,39
chr1	160990876	.	C	A	3215.33	PASS	AC=1;AF=0.682;AN=2;DP=4857;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,57:120:99:2247,0,4032:28,35,18,39
chr1	160990878	.	C	T	3166.48	PASS	AC=1;AF=0.682;AN=2;DP=4783;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,56:118:99:2204,0,4038:27,35,18,38
chr1	161008572	.	C	A	1515.26	PASS	AC=1;AF=0.5;AN=2;DP=1835;MQ=60;set=variant-variant2-variant9-variant10-variant11-variant20-variant23-variant27-variant29-variant31-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:86,58:144:99:1303,0,2316:40,46,29,29
chr1	161008803	.	G	T	310.64	PASS	AC=1;AF=0.5;AN=2;DP=1010;MQ=60;set=variant-variant2-variant9-variant10-variant11-variant20-variant23-variant27-variant29-variant31-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,52:94:99:1166,0,996:17,25,18,34
chr1	161010774	.	A	G	1630.86	PASS	AC=2;AF=0.81;AN=2;DP=1593;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1267,108,0:0,0,8,28
chr1	161010791	.	C	T	508.28	PASS	AC=1;AF=0.692;AN=2;DP=1150;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:401,0,289:1,8,3,11
chr1	161011051	.	CAAA	CAA,CAAAA,C,CA	130.32	PASS	AC=0,1,0,0;AF=0.231,0.192,0.038,0.058;AN=2;DP=1054;set=filterInvariant3-variant4-variant5-variant6-variant7-variant9-filterInvariant10-variant13-variant14-variant16-filterInvariant17-variant18-variant20-filterInvariant21-variant22-filterInvariant23-variant25-variant26-variant29-variant30-variant32-variant35-filterInvariant38-variant39-variant41-filterInvariant42	GT:DP:GQ:SB	0/2:18:27:13,0,4,1
chr1	161011716	.	G	C	1834.64	PASS	AC=2;AF=0.81;AN=2;DP=2688;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2066,177,0:0,0,28,31
chr1	161012760	.	T	C	851.26	PASS	AC=1;AF=0.5;AN=2;DP=889;MQ=60;set=variant-variant2-variant9-variant10-variant11-variant20-variant23-variant27-variant29-variant31-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,23:57:99:717,0,783:15,19,8,15
chr1	161013121	.	C	T	1328.76	PASS	AC=1;AF=0.705;AN=2;DP=5515;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,63:146:99:1505,0,2325:35,48,29,34
chr1	161013312	.	T	C	581.2	PASS	AC=1;AF=0.5;AN=2;DP=508;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant9-variant10-variant11-variant20-variant23-variant27-variant29-variant31-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,25:58:99:657,0,880:12,21,9,16
chr1	161014727	.	A	G	129.14	PASS	AC=1;AF=0.716;AN=2;DP=570;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,8:10:44:205,0,44:1,1,5,3
chr1	161017556	.	C	T	664.33	PASS	AC=1;AF=0.62;AN=2;DP=2711;MQ=60;set=variant-variant4-variant7-variant8-variant11-variant12-variant14-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,51:102:99:1196,0,1432:33,18,27,24
chr1	161019040	.	G	C	1460.5	PASS	AC=1;AF=0.705;AN=2;DP=6941;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,97:178:99:2378,0,2123:42,39,47,50
chr1	161022380	.	G	A	1519.95	PASS	AC=2;AF=0.857;AN=2;DP=3408;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2517,237,0:0,0,34,45
chr1	161022639	.	C	G	58.54	PASS	AC=1;AF=0.75;AN=2;DP=185;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:59:202,0,59:1,1,3,3
chr1	161023279	.	TC	T	318.08	PASS	AC=1;AF=0.5;AN=2;DP=201;set=variant-variant2-variant9-variant10-variant11-variant20-variant23-variant27-variant29-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:314,0,476:2,9,2,7
chr1	161023281	.	TCTCTCTCTCTCTCTC	T,TTCTCTCTCTCTCTC	314.97	PASS	AC=1,0;AF=0.462,0.038;AN=2;DP=217;set=variant-variant2-variant9-variant10-variant11-variant20-variant23-variant27-variant29-variant31-variant38-variant41-variant42	GT:DP:GQ:SB	0/1:20:99:2,9,2,7
chr1	161024782	.	C	T	123.2	PASS	AC=1;AF=0.705;AN=2;DP=597;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:99:122,0,393:4,9,1,4
chr1	161026079	.	A	T	92.47	PASS	AC=1;AF=0.5;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant9-variant10-variant20-variant23-variant27-variant29-variant31-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:66:66,0,226:6,1,2,2
chr1	161030059	.	CA	C,CAA	151.1	PASS	AC=0,1;AF=0.524,0.214;AN=2;DP=287;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant16-variant17-variant20-variant25-variant26-variant27-variant29-variant30-variant38-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:8:29:0,2,1,5
chr1	161043735	.	A	C	227.97	PASS	AC=2;AF=0.838;AN=2;DP=953;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:763,63,0:0,0,4,17
chr1	161043764	.	G	A	183.99	PASS	AC=2;AF=0.838;AN=2;DP=723;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:607,42,0:0,0,1,13
chr1	161047125	.	CTATA	C	97.73	PASS	AC=2;AF=0.872;AN=2;DP=342;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:400,27,0:0,0,9,0
chr1	161049358	.	G	A	5053.74	PASS	AC=2;AF=0.93;AN=2;DP=5957;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:4058,365,0:0,0,72,50
chr1	161090077	.	C	G	838.76	PASS	AC=1;AF=0.5;AN=2;DP=477;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant22-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,42:97:99:1114,0,1472:31,24,23,19
chr1	161090467	.	A	G	1555.01	PASS	AC=1;AF=0.5;AN=2;DP=119;FS=0.677;FractionInformativeReads=1;MQ=60;MQRankSum=-2.444;QD=13.07;ReadPosRankSum=-1.383;SOR=0.628;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,55:119:99:1583,0,1597:28,36,25,30
chr1	161090597	.	A	C	132.59	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=380;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:53,13:66:99:126,0,1140:10,43,13,0
chr1	161093425	.	CAA	CA,C	46.03	PASS	AC=0,1;AF=0.571,0.214;AN=2;DP=46;FS=0;set=variant4-variant14-variant19-variant21-variant24-variant35-variant41	GT:DP:GQ:SB	0/2:6:66:3,0,3,0
chr1	161132821	.	C	A	1255.65	PASS	AC=1;AF=0.5;AN=2;DP=452;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant22-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,30:61:99:711,0,795:15,16,13,17
chr1	161160460	.	T	TCA	646.34	PASS	AC=1;AF=0.595;AN=2;DP=1617;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant29-variant32-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:829,0,887:14,14,10,17
chr1	161160580	.	T	C	427.88	PASS	AC=1;AF=0.5;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant22-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:331,0,387:2,10,4,6
chr1	161162173	.	G	A	714	PASS	AC=1;AF=0.708;AN=2;DP=2080;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:784,0,505:8,14,8,20
chr1	161163037	.	T	C	1040.6	PASS	AC=1;AF=0.708;AN=2;DP=3163;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,37:102:99:886,0,1510:38,27,18,19
chr1	161163633	.	C	T	1117.85	PASS	AC=1;AF=0.722;AN=2;DP=3829;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,49:121:99:1056,0,1891:36,36,25,24
chr1	161165724	.	GACAC	GACACAC,G,GACACACAC,GAC	158.12	PASS	AC=1,0,0,0;AF=0.353,0.25,0.029,0.015;AN=2;DP=527;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:7:78:2,1,2,2
chr1	161167698	.	T	G	602.47	PASS	AC=1;AF=0.722;AN=2;DP=1332;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:634,0,872:23,4,17,4
chr1	161176137	.	A	G	2268.13	PASS	AC=1;AF=0.722;AN=2;DP=5049;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,84:136:99:2070,0,1307:36,16,49,35
chr1	161184059	.	CTGTGTGTGTG	CTGTGTGTGTGTG,CTGTGTGTGTGTGTGTG,CTGTGTGTG,CTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTG,C,CTGTGTGTGTGTGTGTGTGTG	260.2	PASS	AC=0,0,0,1,0,0,0;AF=0.205,0.205,0.026,0.154,0.077,0.013,0.013;AN=2;DP=1949;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/4:21:99:1,10,3,7
chr1	161185058	.	G	T	1224.37	PASS	AC=1;AF=0.559;AN=2;DP=2042;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant18-variant22-variant28-variant29-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:66,69:135:99:1804,0,1775:42,24,44,25
chr1	161187665	.	C	T	469.19	PASS	AC=1;AF=0.529;AN=2;DP=589;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant18-variant22-variant28-variant29-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:410,0,436:9,4,11,1
chr1	161192845	.	CCACACACACACACA	CCA,CCACACACA,CCACACACACACA,C,CCACACACACA,CCACA,CCACACACACACACACA,CCACACACACACACACACA,CCACACACACACACACACACACA,CCACACA	256.52	PASS	AC=0,1,0,0,0,0,0,0,0,0;AF=0.174,0.233,0.058,0.023,0.012,0.093,0.035,0.012,0.012,0.012;AN=2;DP=3731;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:60:99:14,14,11,21
chr1	161195709	.	CTTTTTTTTT	CTT,CT,CTTTTTTTT,CTTTT,C,CTTT	97.92	PASS	AC=0,0,0,0,0,1;AF=0.452,0.167,0.024,0.095,0.024,0.024;AN=2;DP=169;set=variant4-variant7-variant8-variant10-variant12-variant14-variant15-variant21-variant22-variant25-variant27-variant29-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/6:8:99:1,2,1,4
chr1	161197244	.	C	A	285.01	PASS	AC=1;AF=0.563;AN=2;DP=334;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant10-variant11-variant12-variant18-variant22-variant23-variant28-variant29-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:307,0,433:8,3,5,6
chr1	161200487	.	C	A	353.21	PASS	AC=1;AF=0.671;AN=2;DP=1868;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,23:53:99:610,0,987:18,12,15,8
chr1	161203227	.	G	A	89.95	PASS	AC=2;AF=0.625;AN=2;DP=107;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant10-variant11-variant18-variant23-variant28-variant29-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,8:9:17:268,17,0:0,1,4,4
chr1	161204906	.	G	A	251.83	PASS	AC=1;AF=0.604;AN=2;DP=603;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant21-variant22-variant23-variant27-variant28-variant29-variant33-variant34-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:141,0,271:8,3,4,4
chr1	161253657	.	C	T	350.51	PASS	AC=1;AF=0.638;AN=2;DP=1009;MQ=60;set=variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:222,0,301:4,8,4,6
chr1	161253684	.	AT	A	174.31	PASS	AC=1;AF=0.533;AN=2;DP=305;MQ=60;set=variant2-variant6-variant10-variant12-variant18-variant19-variant21-variant22-variant23-variant29-variant30-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:222,0,124:1,4,3,5
chr1	161254847	.	G	A	717.56	PASS	AC=1;AF=0.5;AN=2;DP=120;FractionInformativeReads=1;MQ=60;set=variant12-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:475,0,526:7,12,9,9
chr1	161276376	.	G	A	406.42	PASS	AC=1;AF=0.56;AN=2;DP=1290;MQ=60;set=variant3-variant9-variant11-variant12-variant13-variant15-variant17-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:953,0,959:10,24,13,21
chr1	161276434	.	A	G	1030.4	PASS	AC=2;AF=1;AN=2;DP=1742;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1293,105,0:0,0,21,14
chr1	161279882	.	A	G	123.15	PASS	AC=1;AF=0.603;AN=2;DP=457;MQ=60;set=variant2-variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:183,0,291:4,4,2,3
chr1	161284297	.	T	C	1987.93	PASS	AC=1;AF=0.5;AN=2;DP=1616;MQ=60;set=variant2-variant9-variant12-variant13-variant24-variant28-variant34-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:94,76:170:99:2098,0,2494:33,61,25,51
chr1	161479745	.	A	G	3428.86	PASS	AC=1;AF=0.625;AN=2;DP=10311;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:143,133:276:99:3411,0,3426:79,64,69,64
chr1	161487863	.	C	T	1352.63	PASS	AC=1;AF=0.545;AN=2;DP=1614;set=variant-variant7-variant14-variant16-variant21-variant22-variant23-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,70:141:99:1646,0,1768:36,35,41,29
chr1	161488017	.	T	C	868.13	PASS	AC=1;AF=0.545;AN=2;DP=874;set=variant-variant7-variant14-variant16-variant21-variant22-variant23-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,39:75:99:995,0,884:12,24,11,28
chr1	161494046	.	C	G	4525.11	PASS	AC=1;AF=0.5;AN=2;DP=3395;FractionInformativeReads=1;set=variant4-variant6-variant13-variant25-variant27-variant28-variant30-variant32-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:148,183:331:99:4326,0,3478:80,68,98,85
chr1	161494311	.	G	C	3117.52	PASS	AC=2;AF=0.826;AN=2;DP=3970;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2755,222,0:0,0,33,41
chr1	161494322	.	A	C	838.29	PASS	AC=1;AF=0.605;AN=2;DP=1498;set=variant-variant2-variant3-variant6-variant7-variant11-variant13-variant14-variant16-variant21-variant22-variant23-variant28-variant34-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,37:65:99:914,0,613:11,17,17,20
chr1	161495040	.	C	T	3383.21	PASS	AC=1;AF=0.545;AN=2;DP=3427;set=variant-variant7-variant14-variant16-variant21-variant22-variant23-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:177,158:335:99:4173,0,4772:95,82,82,76
chr1	161495477	.	A	T	10864.1	PASS	AC=1;AF=0.707;AN=2;DP=21389;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:278,221:499:99:5289,0,7172:135,143,96,125
chr1	161495885	.	T	C	2487.4	PASS	AC=2;AF=0.821;AN=2;DP=7349;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:5753,536,0:0,0,79,100
chr1	161496134	.	C	G	407.9	PASS	AC=1;AF=0.5;AN=2;DP=843;FractionInformativeReads=1;set=variant-variant7-variant14-variant16-variant21-variant22-variant23-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,29:75:99:883,0,1438:29,17,10,19
chr1	161496178	.	G	A	491.91	PASS	AC=1;AF=0.5;AN=2;DP=983;set=variant-variant7-variant14-variant16-variant21-variant22-variant23-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,25:88:99:715,0,1801:38,25,15,10
chr1	161514542	.	A	C	954.66	PASS	AC=2;AF=0.672;AN=2;DP=2421;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant11-variant12-variant13-variant14-variant16-variant21-variant22-variant23-variant25-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3436,297,0:0,0,74,25
chr1	161518676	.	G	A	611.77	PASS	AC=1;AF=0.5;AN=2;DP=311;FractionInformativeReads=1;set=variant4-variant6-variant13-variant25-variant27-variant28-variant30-variant32-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:350,0,274:8,3,9,4
chr1	161518757	.	T	C	1466.15	PASS	AC=1;AF=0.542;AN=2;DP=895;FractionInformativeReads=1;set=variant4-variant6-variant13-variant25-variant27-variant28-variant30-variant32-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,45:72:99:1209,0,655:16,11,30,15
chr1	161518908	.	C	T	286.78	PASS	AC=1;AF=0.667;AN=2;DP=333;FractionInformativeReads=1;set=variant-variant7-variant16-variant21-variant22-variant23-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,30:56:99:647,0,697:6,20,13,17
chr1	161519750	.	G	A	936.06	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=2.138;FractionInformativeReads=1;MQ=60;MQRankSum=-0.696;QD=9.55;ReadPosRankSum=0.888;SOR=0.412;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,36:98:99:964,0,2132:12,50,9,27
chr1	161561287	.	A	G	163.06	PASS	AC=2;AF=0.987;AN=2;DP=410;FS=0;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:558,45,0:0,0,2,13
chr1	161565622	.	A	G	107	PASS	AC=2;AF=0.688;AN=2;DP=55;FractionInformativeReads=1;set=variant7-variant12-variant17-variant21-variant22-variant23-variant34-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:209,18,0:0,0,0,6
chr1	161569419	.	C	G	92.3	PASS	AC=2;AF=0.967;AN=2;DP=50;FS=0;FractionInformativeReads=1;MQRankSum=-1.026;ReadPosRankSum=-1.026;set=variant2-variant3-variant4-variant7-variant10-variant11-variant13-variant16-variant19-variant22-variant25-variant28-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:80,6,0:0,0,2,0
chr1	161577204	.	G	T	4843.08	PASS	AC=2;AF=0.594;AN=2;DP=3297;set=variant-variant2-variant5-variant8-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,96:98:99:3415,244,0:1,1,23,73
chr1	161593349	.	C	T	3834.99	PASS	AC=2;AF=1;AN=2;DP=3690;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1788,143,0:0,0,10,38
chr1	161593397	.	C	G	2162.19	PASS	AC=2;AF=1;AN=2;DP=2186;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:979,69,0:0,0,6,17
chr1	161593468	.	A	G	1619.72	PASS	AC=2;AF=1;AN=2;DP=2795;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:806,69,0:0,0,10,13
chr1	161593551	.	T	G	1475.74	PASS	AC=2;AF=1;AN=2;DP=1690;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:790,54,0:0,0,1,17
chr1	161593571	.	A	G	1255.78	PASS	AC=2;AF=1;AN=2;DP=1473;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:675,45,0:0,0,1,14
chr1	161594226	.	C	T	540.2	PASS	AC=2;AF=1;AN=2;DP=1062;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:309,24,0:0,0,8,0
chr1	161594246	.	G	T	697.63	PASS	AC=2;AF=1;AN=2;DP=1483;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:441,39,0:0,0,11,2
chr1	161594525	.	G	C	2990.38	PASS	AC=2;AF=1;AN=2;DP=2956;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1730,117,0:0,0,10,29
chr1	161594526	.	T	G	2990.38	PASS	AC=2;AF=1;AN=2;DP=2856;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1730,117,0:0,0,10,27
chr1	161594561	.	C	G	1263.63	PASS	AC=2;AF=0.988;AN=2;DP=1854;FS=0;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:956,93,0:0,0,8,23
chr1	161596283	.	G	A	1419.83	PASS	AC=2;AF=0.966;AN=2;DP=2667;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:615,54,0:0,0,4,14
chr1	161599693	.	T	C	1257.96	PASS	AC=2;AF=0.987;AN=2;DP=3367;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2132,210,0:0,0,39,31
chr1	161600287	.	AT	A	784.17	PASS	AC=2;AF=0.603;AN=2;DP=1191;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:586,51,0:0,0,5,12
chr1	161600345	.	C	T	69.04	PASS	AC=2;AF=0.662;AN=2;DP=343;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant10-filterInvariant11-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant20-variant21-filterInvariant22-filterInvariant23-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:198,21,0:0,0,0,7
chr1	161600832	.	G	T	765.63	PASS	AC=2;AF=0.776;AN=2;DP=1157;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:573,42,0:0,0,13,1
chr1	161601133	.	T	C	1411.26	PASS	AC=2;AF=1;AN=2;DP=1785;FS=0;MQRankSum=-1.264;ReadPosRankSum=0.234;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:756,63,0:0,0,4,17
chr1	161642985	.	G	A	951.06	PASS	AC=2;AF=0.636;AN=2;DP=1554;set=variant-variant2-variant10-variant21-variant22-variant23-variant29-variant32-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4550,454,0:0,0,78,74
chr1	161676904	.	T	C	8677.85	PASS	AC=1;AF=0.756;AN=2;DP=13474;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:143,129:272:99:3153,0,3579:80,63,67,62
chr1	161676970	.	A	G	10093.8	PASS	AC=1;AF=0.756;AN=2;DP=14889;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:162,142:304:99:3434,0,4045:80,82,70,72
chr1	161677350	.	A	G	196.77	PASS	AC=1;AF=0.786;AN=2;DP=263;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:190,0,188:2,5,2,4
chr1	161680258	.	G	A	4606.22	PASS	AC=1;AF=0.732;AN=2;DP=6063;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,69:143:99:1605,0,1959:42,32,37,32
chr1	161680522	.	G	C	1162.94	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=1.953;FractionInformativeReads=1;MQ=60;MQRankSum=-1.53;QD=15.93;ReadPosRankSum=1.889;SOR=0.735;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,43:73:99:1191,0,708:14,16,23,20
chr1	161680868	.	T	C	254.9	PASS	AC=1;AF=0.676;AN=2;DP=728;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:346,0,178:6,1,6,4
chr1	161681661	.	C	G	1623.09	PASS	AC=1;AF=0.6;AN=2;DP=1519;MQ=60;set=variant5-variant9-variant13-variant16-variant19-variant30-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:103,108:211:99:2509,0,2697:57,46,62,46
chr1	161681780	.	A	G	1814.44	PASS	AC=1;AF=0.591;AN=2;DP=1780;MQ=60;set=variant5-variant9-variant10-variant13-variant16-variant19-variant30-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,92:178:99:2435,0,2354:35,51,42,50
chr1	161683136	.	G	A	9395.66	PASS	AC=1;AF=0.681;AN=2;DP=9513;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:154,106:260:99:2849,0,4328:94,60,71,35
chr1	161691366	.	C	A	349.59	PASS	AC=1;AF=0.875;AN=2;DP=725;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:202,0,105:3,1,5,3
chr1	161691433	.	C	T	610.68	PASS	AC=1;AF=0.762;AN=2;DP=1212;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:345,0,326:9,5,9,6
chr1	161691617	.	G	A	368.86	PASS	AC=1;AF=0.5;AN=2;DP=56;FractionInformativeReads=1;MQ=60;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:171,0,216:5,3,2,5
chr1	161692711	.	A	G	1071.53	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.326;QD=18.8;ReadPosRankSum=-2.801;SOR=0.772;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,37:57:99:1100,0,547:11,9,21,16
chr1	161693085	.	G	C	985.48	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.992;QD=16.42;ReadPosRankSum=-1.275;SOR=0.641;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,34:60:99:1014,0,780:18,8,23,11
chr1	161695639	.	G	T	3137.09	PASS	AC=2;AF=0.852;AN=2;DP=5681;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3913,378,0:0,0,74,53
chr1	161696088	.	T	C	5370.74	PASS	AC=1;AF=0.768;AN=2;DP=8882;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,115:204:99:2964,0,2148:40,49,59,56
chr1	161696782	.	G	C	1298.61	PASS	AC=1;AF=0.662;AN=2;DP=2451;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,21:56:99:441,0,957:13,22,9,12
chr1	161696998	.	C	G	488.36	PASS	AC=1;AF=0.662;AN=2;DP=740;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:262,0,313:7,2,6,2
chr1	161697072	.	G	C	993.86	PASS	AC=1;AF=0.5;AN=2;DP=479;MQ=60;set=variant10-variant27-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,58:110:99:1575,0,1368:36,16,41,17
chr1	161697977	.	G	C	2670.33	PASS	AC=1;AF=0.5;AN=2;DP=726;MQ=60;set=variant27-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:94,82:176:99:2293,0,2412:34,60,36,46
chr1	161698011	.	CGGGGG	CG,CGGG,C,CGG,CGGGG	7611.69	PASS	AC=1,0,1,0,0;AF=0.607,0.036,0.06,0.036,0.012;AN=2;DP=4926;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/1:95:99:0,0,28,67
chr1	161698019	.	G	C	7619.45	PASS	AC=1;AF=0.676;AN=2;DP=4104;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,59:99:99:2209,0,1444:16,24,14,45
chr1	161698022	.	G	T	1832.73	PASS	AC=1;AF=0.5;AN=2;DP=483;set=variant10-variant27-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,37:94:99:1297,0,2185:14,43,14,23
chr1	161719379	.	G	A	379.01	PASS	AC=1;AF=0.5;AN=2;DP=136;MQ=60;set=variant10-variant16-variant21-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:389,0,261:6,3,9,3
chr1	161721351	.	A	G	959.06	PASS	AC=2;AF=0.732;AN=2;DP=840;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1263,108,0:0,0,28,8
chr1	161721707	.	C	T	4371.28	PASS	AC=2;AF=0.659;AN=2;DP=3155;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant34-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4215,422,0:0,0,76,65
chr1	161722779	.	C	CAAA,CAA	848.2	PASS	AC=2,0;AF=0.795,0.08;AN=2;DP=1237;set=Intersection	GT:DP:GQ:SB	1/1:17:55:1,0,15,1
chr1	161726951	.	G	C	1467.88	PASS	AC=1;AF=0.5;AN=2;DP=395;MQ=60;set=variant10-variant16-variant21-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,23:62:99:654,0,1329:6,33,4,19
chr1	161736035	.	A	G	1732.16	PASS	AC=2;AF=0.875;AN=2;DP=3231;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2071,207,0:0,0,33,36
chr1	161751741	.	A	G	4040.09	PASS	AC=1;AF=0.568;AN=2;DP=2627;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant15-variant17-variant20-variant21-variant22-variant23-variant27-variant29-variant32-variant33-variant34-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,38:102:99:793,0,1488:37,27,19,19
chr1	161822959	.	C	T	85.2	PASS	AC=2;AF=0.963;AN=2;DP=266;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:200,21,0:0,0,5,2
chr1	161823011	.	T	A	509.88	PASS	AC=1;AF=0.707;AN=2;DP=1051;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:356,0,307:8,2,9,8
chr1	161823197	.	G	GT	2657.26	PASS	AC=1;AF=0.738;AN=2;DP=2864;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,34:58:99:1033,0,679:11,13,11,23
chr1	161928327	.	A	G	2859.41	PASS	AC=1;AF=0.798;AN=2;DP=4040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,35:87:99:882,0,1471:24,28,13,22
chr1	161928568	.	G	A	785.78	PASS	AC=1;AF=0.798;AN=2;DP=982;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:89:89,0,442:5,9,4,3
chr1	161928771	.	G	A	2290.86	PASS	AC=1;AF=0.5;AN=2;DP=1490;MQ=60;set=variant9-variant10-variant13-variant16-variant21-variant30-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:91,78:169:99:1909,0,2450:58,33,50,28
chr1	161929235	.	T	C	234.82	PASS	AC=2;AF=0.917;AN=2;DP=375;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:358,27,0:0,0,1,8
chr1	161929459	.	CAAAAAAA	CAA,CA,C,CAAA,CAAAAA,CAAAA	1635.02	PASS	AC=1,0,0,0,0,0;AF=0.355,0.211,0.026,0.079,0.013,0.013;AN=2;DP=3047;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:54:99:14,10,28,2
chr1	161929761	.	C	T	10036.9	PASS	AC=2;AF=0.875;AN=2;DP=11887;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,259:259:99:8189,775,0:0,0,136,123
chr1	161929878	.	TAA	TA,TAAA,T	6397.56	PASS	AC=1,1,0;AF=0.761,0.068,0.011;AN=2;DP=11482;set=Intersection	GT:DP:GQ:SB	1/2:217:99:18,16,96,87
chr1	161930476	.	C	T	1413.35	PASS	AC=1;AF=0.78;AN=2;DP=2048;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,28:65:99:724,0,928:17,20,14,14
chr1	161930730	.	A	G	1375.88	PASS	AC=1;AF=0.596;AN=2;DP=1196;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant27-variant29-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,36:56:99:917,0,495:11,9,17,19
chr1	161930873	.	A	G	1101.25	PASS	AC=1;AF=0.5;AN=2;DP=518;MQ=60;set=variant10-variant16-variant21-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,50:89:99:1255,0,945:20,19,26,24
chr1	161930908	.	G	A	2855.39	PASS	AC=1;AF=0.786;AN=2;DP=3677;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,45:89:99:1006,0,1098:23,21,22,23
chr1	161930954	.	G	A	2670.51	PASS	AC=1;AF=0.571;AN=2;DP=1777;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant15-variant17-variant20-variant21-variant22-variant27-variant29-variant32-variant33-variant34-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,43:79:99:1138,0,875:17,19,18,25
chr1	161931049	.	C	G	751.83	PASS	AC=1;AF=0.5;AN=2;DP=297;FractionInformativeReads=1;MQ=60;set=variant10-variant16-variant21-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:558,0,604:9,14,7,13
chr1	161931167	.	A	G	2005.96	PASS	AC=1;AF=0.786;AN=2;DP=2607;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:506,0,720:16,10,12,6
chr1	161931260	.	T	C	4280.85	PASS	AC=1;AF=0.596;AN=2;DP=3725;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant14-variant15-variant17-variant20-variant21-variant22-variant25-variant27-variant29-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,52:105:99:1396,0,1378:31,22,32,20
chr1	161931361	.	ATT	AT,A,ATTT	447.62	PASS	AC=0,1,0;AF=0.419,0.081,0.012;AN=2;DP=7293;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:110:99:28,25,26,31
chr1	161931502	.	G	A	1365.55	PASS	AC=1;AF=0.5;AN=2;DP=672;MQ=60;set=variant10-variant16-variant21-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,28:79:99:677,0,1298:22,29,12,16
chr1	161931538	.	G	T	2952.11	PASS	AC=1;AF=0.786;AN=2;DP=3534;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,40:64:99:1113,0,665:12,12,12,28
chr1	161931628	.	G	C	2740.83	PASS	AC=1;AF=0.786;AN=2;DP=2241;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,24:57:99:806,0,972:18,15,14,10
chr1	161931802	.	A	G	12726.2	PASS	AC=1;AF=0.786;AN=2;DP=13657;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,155:345:99:3810,0,4773:106,84,86,69
chr1	161931915	.	AT	A	10987.3	PASS	AC=1;AF=0.786;AN=2;DP=13811;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,173:325:99:3885,0,3321:68,84,79,94
chr1	161932148	.	T	C	1379.77	PASS	AC=1;AF=0.5;AN=2;DP=555;MQ=60;set=variant10-variant16-variant21-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,40:88:99:1133,0,1492:21,27,18,22
chr1	161932324	.	A	G	6734.58	PASS	AC=1;AF=0.786;AN=2;DP=7709;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,88:172:99:2132,0,2039:42,42,40,48
chr1	161933048	.	G	A	14720.1	PASS	AC=1;AF=0.786;AN=2;DP=14218;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:191,163:354:99:4024,0,4785:94,97,76,87
chr1	161933066	.	G	C	14283.5	PASS	AC=2;AF=0.83;AN=2;DP=14017;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,333:333:99:10323,997,0:0,0,159,174
chr1	161933324	.	G	A	613.58	PASS	AC=1;AF=0.5;AN=2;DP=292;FractionInformativeReads=1;MQ=60;set=variant10-variant16-variant21-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:649,0,639:7,15,9,14
chr1	161953004	.	T	TA,TAA	1548.05	PASS	AC=1,0;AF=0.531,0.031;AN=2;DP=1977;MQ=60;set=variant5-variant10-variant14-variant15-variant20-variant21-variant30-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:94:99:35,18,29,12
chr1	161953015	.	A	G	6026.67	PASS	AC=1;AF=0.75;AN=2;DP=5419;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,65:126:99:1473,0,1975:39,22,38,27
chr1	161954448	.	C	T	371.58	PASS	AC=1;AF=0.757;AN=2;DP=556;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:437,0,173:5,2,10,6
chr1	161954587	.	C	G	1902.28	PASS	AC=1;AF=0.5;AN=2;DP=129;FS=1.452;FractionInformativeReads=1;MQ=60;MQRankSum=-0.929;QD=14.75;ReadPosRankSum=-0.432;SOR=0.538;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,75:129:99:1931,0,1389:34,20,44,31
chr1	161967681	.	A	G	2066.81	PASS	AC=2;AF=0.762;AN=2;DP=5199;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3446,356,0:0,0,65,54
chr1	161976234	.	A	G	2940.75	PASS	AC=1;AF=0.821;AN=2;DP=5027;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,64:121:99:1676,0,1316:29,28,35,29
chr1	161976272	.	G	GA	2556.64	PASS	AC=2;AF=0.932;AN=2;DP=5464;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:10,93:103:98:2383,98,0:4,6,44,49
chr1	161993308	.	C	T	823.01	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.618;QD=9.25;ReadPosRankSum=-1.398;SOR=0.757;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,38:89:99:851,0,1434:25,26,18,20
chr1	162126771	.	C	T	543.4	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.379;QD=13.25;ReadPosRankSum=-0.118;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:572,0,465:13,6,15,7
chr1	162257281	.	A	G	633.49	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=0.934;FractionInformativeReads=1;MQ=60;MQRankSum=-1.765;QD=8.8;ReadPosRankSum=-2.736;SOR=0.529;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,30:72:99:662,0,1029:15,27,12,18
chr1	162302635	.	T	C	444.74	PASS	AC=1;AF=0.727;AN=2;DP=761;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:425,0,339:9,3,12,1
chr1	162302689	.	C	T	776.95	PASS	AC=1;AF=0.719;AN=2;DP=1833;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,36:59:99:969,0,547:14,9,22,14
chr1	162313518	.	A	G	1043.35	PASS	AC=1;AF=0.591;AN=2;DP=2262;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant21-variant23-variant25-variant27-variant29-variant33-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,63:114:99:1687,0,1273:36,15,37,26
chr1	162313597	.	T	C	4452.38	PASS	AC=2;AF=0.989;AN=2;DP=7655;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:5436,551,0:0,0,91,93
chr1	162313735	.	C	T	872.61	PASS	AC=1;AF=0.635;AN=2;DP=2470;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant23-variant25-variant26-variant27-variant29-variant33-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1040,0,1500:21,33,22,25
chr1	162330927	.	C	G	49.73	PASS	AC=1;AF=0.588;AN=2;DP=90;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant9-variant13-variant19-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:116,0,34:0,1,0,3
chr1	162334100	.	T	C	2014.52	PASS	AC=1;AF=0.731;AN=2;DP=2360;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,31:51:99:891,0,538:9,11,9,22
chr1	162334438	.	G	A	456.65	PASS	AC=1;AF=0.5;AN=2;DP=102;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,22:58:99:485,0,933:18,18,10,12
chr1	162334875	.	T	TGCAC	526.96	PASS	AC=1;AF=0.529;AN=2;DP=620;set=variant2-variant4-variant5-variant7-variant15-variant18-variant20-variant21-variant25-variant27-variant28-variant29-variant33-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:571,0,1592:6,9,9,6
chr1	162334881	.	T	TGTGC	478.98	PASS	AC=1;AF=0.529;AN=2;DP=635;FractionInformativeReads=1;set=variant2-variant4-variant5-variant7-variant15-variant18-variant20-variant21-variant25-variant27-variant28-variant29-variant33-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:592,0,1589:6,9,9,7
chr1	162335052	.	C	T	1400.37	PASS	AC=1;AF=0.577;AN=2;DP=3058;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant34-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,51:117:99:1305,0,1759:40,26,34,17
chr1	162335256	.	C	T	1122.03	PASS	AC=1;AF=0.529;AN=2;DP=2065;MQ=60;set=variant2-variant4-variant5-variant7-variant15-variant18-variant20-variant21-variant25-variant27-variant28-variant29-variant33-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,56:123:99:1487,0,1927:27,40,21,35
chr1	162335424	.	T	C	471.1	PASS	AC=1;AF=0.829;AN=2;DP=935;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:420,0,304:2,7,2,11
chr1	162338228	.	CAAAAA	C,CAAAAAAA,CAAA,CAAAAAAAA,CAAAAAAAAA	508.03	PASS	AC=1,0,0,0,1;AF=0.349,0.279,0.209,0.047,0.012;AN=2;DP=1467;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/5:26:99:1,1,10,14
chr1	162338377	.	C	G	1017.66	PASS	AC=1;AF=0.802;AN=2;DP=1806;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,32:57:99:735,0,618:15,10,19,13
chr1	162338397	.	A	C	881.43	PASS	AC=1;AF=0.802;AN=2;DP=1620;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:723,0,637:15,9,15,13
chr1	162338485	.	A	G	1028.8	PASS	AC=1;AF=0.802;AN=2;DP=1801;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,31:51:99:895,0,604:11,9,17,14
chr1	162338496	.	G	A	427.26	PASS	AC=1;AF=0.574;AN=2;DP=1165;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant34-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,30:53:99:867,0,612:11,12,16,14
chr1	162338853	.	G	A	1105.58	PASS	AC=1;AF=0.574;AN=2;DP=2186;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant34-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,41:96:99:1259,0,2128:32,23,27,14
chr1	162338855	.	G	GGT	640.96	PASS	AC=1;AF=0.5;AN=2;DP=868;set=variant5-variant15-variant20-variant21-variant27-variant28-variant29-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,45:89:99:1360,0,1551:28,16,29,16
chr1	162338962	.	C	T	8982.53	PASS	AC=1;AF=0.802;AN=2;DP=10693;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,116:246:99:2955,0,3179:68,62,66,50
chr1	162339260	.	T	TG	378.52	PASS	AC=1;AF=0.713;AN=2;DP=1559;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:343,0,730:10,16,5,11
chr1	162339261	.	G	GA	215.78	PASS	AC=1;AF=0.574;AN=2;DP=1086;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant34-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:598,0,376:5,11,10,14
chr1	162339579	.	T	C	2552.2	PASS	AC=2;AF=1;AN=2;DP=4394;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3008,281,0:0,0,46,48
chr1	162343774	.	A	G	1242.02	PASS	AC=2;AF=0.633;AN=2;DP=4252;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:4807,485,0:0,0,87,75
chr1	162344102	.	C	T	898.02	PASS	AC=2;AF=0.625;AN=2;DP=3988;MQ=60;set=variant-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4041,396,0:0,0,69,64
chr1	162344390	.	A	G	1292.06	PASS	AC=2;AF=1;AN=2;DP=3214;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2275,198,0:0,0,21,45
chr1	162345091	.	G	A	2930.39	PASS	AC=2;AF=0.966;AN=2;DP=4272;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3178,300,0:0,0,66,34
chr1	162345472	.	C	T	431.9	PASS	AC=2;AF=0.966;AN=2;DP=954;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:659,69,0:0,0,8,15
chr1	162346433	.	CA	C	1249.58	PASS	AC=1;AF=0.607;AN=2;DP=3614;MQ=60;set=variant-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,49:103:99:1188,0,1334:26,28,32,17
chr1	162348662	.	C	T	2282.49	PASS	AC=2;AF=0.989;AN=2;DP=3162;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2325,214,0:0,0,48,24
chr1	162352111	.	G	A	152.64	PASS	AC=2;AF=0.684;AN=2;DP=1054;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1179,105,0:0,0,10,25
chr1	162353726	.	T	C	1182.86	PASS	AC=2;AF=0.726;AN=2;DP=4053;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2974,288,0:0,0,50,46
chr1	162354506	.	G	A	801.71	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.449;QD=12.15;ReadPosRankSum=2.347;SOR=0.58;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:830,0,827:21,12,20,13
chr1	162354525	.	A	G	1575.22	PASS	AC=2;AF=1;AN=2;DP=2868;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2682,219,0:0,0,42,31
chr1	162355668	.	G	GTAT	1150	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=1.021;FractionInformativeReads=0.982;MQ=60;MQRankSum=1.488;QD=20.91;ReadPosRankSum=1.227;SOR=0.551;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:1187,0,1094:11,13,15,15
chr1	162355883	.	G	A	622.89	PASS	AC=1;AF=0.621;AN=2;DP=2339;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,44:86:99:1126,0,1133:20,22,26,18
chr1	162356324	.	G	T	1049.27	PASS	AC=2;AF=1;AN=2;DP=1657;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1022,102,0:0,0,17,17
chr1	162356392	.	G	C	574.93	PASS	AC=2;AF=0.677;AN=2;DP=1207;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-filterInvariant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1315,123,0:0,0,20,21
chr1	162356487	.	G	T	618.09	PASS	AC=2;AF=0.677;AN=2;DP=1260;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:970,84,0:0,0,14,14
chr1	162366121	.	G	A	11165.4	PASS	AC=2;AF=1;AN=2;DP=13795;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,292:292:99:9064,875,0:0,0,148,144
chr1	162367071	.	C	T	706.33	PASS	AC=2;AF=0.621;AN=2;DP=3050;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3418,325,0:0,0,55,54
chr1	162368906	.	C	T	863.14	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=5.085;FractionInformativeReads=1;MQ=60;MQRankSum=1.141;QD=13.7;ReadPosRankSum=0.892;SOR=0.297;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,35:63:99:891,0,807:9,19,16,19
chr1	162496065	.	CTT	CT,C	2174.09	PASS	AC=2,0;AF=0.519,0.185;AN=2;DP=5477;MQ=60;set=variant-variant4-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41	GT:DP:GQ:SB	1/1:173:99:3,1,84,85
chr1	162625020	.	G	A	286.33	PASS	AC=1;AF=0.943;AN=2;DP=943;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:297,0,382:9,7,8,6
chr1	162675040	.	T	C	230.35	PASS	AC=1;AF=0.872;AN=2;DP=390;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:76:76,0,115:1,2,2,1
chr1	162688809	.	A	G	762.52	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=1.787;FractionInformativeReads=1;MQ=60;MQRankSum=0.148;QD=8.57;ReadPosRankSum=0.714;SOR=0.476;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,34:89:99:791,0,1393:31,24,17,17
chr1	162722846	.	C	G	2205.02	PASS	AC=2;AF=0.989;AN=2;DP=3534;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2910,252,0:0,0,53,31
chr1	162725655	.	A	C	774.68	PASS	AC=2;AF=0.989;AN=2;DP=591;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.55;ReadPosRankSum=-0.937;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:264,18,0:0,0,0,6
chr1	162736851	.	G	GAAAA,GAA,GAAA	872.08	PASS	AC=1,1,0;AF=0.705,0.273,0.011;AN=2;DP=638;FS=0;MQ=60;MQRankSum=1.106;ReadPosRankSum=0.715;set=Intersection	GT:DP:GQ:SB	2/1:19:99:0,0,18,1
chr1	162736856	.	C	A	1020.16	PASS	AC=2;AF=0.989;AN=2;DP=747;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.637;ReadPosRankSum=-1.331;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:1024,69,0:0,0,22,1
chr1	162737116	.	C	G	2168.55	PASS	AC=1;AF=0.579;AN=2;DP=1350;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant10-variant13-variant14-variant17-variant20-variant22-variant23-variant24-variant32-variant33-variant34-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:1132,0,1051:16,25,14,27
chr1	162737338	.	G	C	238.54	PASS	AC=2;AF=1;AN=2;DP=139;FS=0;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:222,15,0:0,0,1,4
chr1	162740327	.	T	C	2330.27	PASS	AC=2;AF=0.989;AN=2;DP=6334;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:5377,498,0:0,0,70,96
chr1	162742180	.	T	C	1755.35	PASS	AC=2;AF=0.989;AN=2;DP=2421;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1833,162,0:0,0,21,33
chr1	162743418	.	G	T	1530.75	PASS	AC=2;AF=0.989;AN=2;DP=2667;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1312,120,0:0,0,14,26
chr1	162748588	.	C	A	878.67	PASS	AC=2;AF=0.989;AN=2;DP=1314;FS=0;MQ=60;MQRankSum=0.902;ReadPosRankSum=0.332;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1259,99,0:0,0,6,27
chr1	162750208	.	C	T	674.58	PASS	AC=2;AF=0.989;AN=2;DP=1111;MQ=60;MQRankSum=0.568;ReadPosRankSum=0.016;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:84:1033,84,0:0,0,6,21
chr1	162750210	.	CTT	C,CT	665.54	PASS	AC=1,1;AF=0.693,0.295;AN=2;DP=1058;MQ=60;set=Intersection	GT:DP:GQ:SB	1/2:16:99:0,0,3,13
chr1	162754049	.	G	A	904.69	PASS	AC=1;AF=0.756;AN=2;DP=1043;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:178,0,369:7,5,4,2
chr1	162754244	.	T	G	904.22	PASS	AC=2;AF=0.988;AN=2;DP=619;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:915,66,0:0,0,1,21
chr1	162760551	.	C	T	5695.74	PASS	AC=1;AF=0.756;AN=2;DP=8098;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,103:207:99:2377,0,2503:65,39,59,44
chr1	162760554	.	T	C	5843.37	PASS	AC=2;AF=0.989;AN=2;DP=9636;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:7980,645,0:0,0,128,87
chr1	162765475	.	G	C	1631.55	PASS	AC=2;AF=0.989;AN=2;DP=1707;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1127,120,0:0,0,23,17
chr1	162765636	.	AAGTCTTAGATGAAG	A	767.4	PASS	AC=1;AF=0.763;AN=2;DP=720;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:112,0,560:1,4,0,3
chr1	162766476	.	C	T	5111.7	PASS	AC=1;AF=0.756;AN=2;DP=6390;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,54:122:99:1993,0,3584:34,34,27,27
chr1	162766486	.	A	C	1866.59	PASS	AC=1;AF=0.5;AN=2;DP=118;FS=0;FractionInformativeReads=1;MQ=59.86;MQRankSum=4.964;QD=15.82;ReadPosRankSum=-1.653;SOR=0.638;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,50:118:99:1895,0,3546:35,33,25,25
chr1	162768784	.	CAAA	CAA,CA,C	81.82	PASS	AC=0,2,0;AF=0.512,0.369,0.036;AN=2;DP=479;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:12:35:0,0,9,3
chr1	162768939	.	TA	T	571.08	PASS	AC=2;AF=0.94;AN=2;DP=504;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:375,30,0:0,0,1,9
chr1	162775267	.	C	T	787.6	PASS	AC=1;AF=0.611;AN=2;DP=2252;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:902,0,925:16,20,12,18
chr1	162787243	.	T	A	34.4	PASS	AC=1;AF=0.72;AN=2;DP=416;set=filterInvariant-filterInvariant3-variant5-variant6-filterInvariant8-variant9-variant10-filterInvariant11-variant12-filterInvariant15-filterInvariant16-variant18-filterInvariant19-variant23-filterInvariant24-variant25-filterInvariant26-variant27-variant32-filterInvariant33-variant34-variant39-variant40-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:99:119,0,390:8,5,5,0
chr1	162821291	.	A	G	617.16	PASS	AC=1;AF=0.706;AN=2;DP=2171;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,38:65:99:1015,0,640:11,16,15,23
chr1	162821409	.	G	A	787.55	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=4.848;FractionInformativeReads=1;MQ=60;MQRankSum=0.877;QD=12.31;ReadPosRankSum=-2.05;SOR=0.971;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:816,0,897:19,16,12,17
chr1	162822540	.	A	C	3050.13	PASS	AC=1;AF=0.593;AN=2;DP=2093;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:893,0,1172:13,26,12,20
chr1	162822616	.	A	C	616.74	PASS	AC=1;AF=0.5;AN=2;DP=788;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant13-variant23-variant25-variant26-variant29-variant32-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:596,0,910:11,20,10,14
chr1	162822771	.	A	C	1277.87	PASS	AC=2;AF=0.919;AN=2;DP=1842;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1474,138,0:0,0,27,19
chr1	162822807	.	G	A	845.53	PASS	AC=1;AF=0.5;AN=2;DP=373;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant15-variant16-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,40:60:99:1100,0,527:14,6,27,13
chr1	162823107	.	T	A	349.27	PASS	AC=1;AF=0.5;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant13-variant23-variant25-variant26-variant29-variant32-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:550,0,356:2,10,1,14
chr1	162825258	.	T	C	1317.07	PASS	AC=1;AF=0.531;AN=2;DP=1142;MQ=60;set=variant4-variant6-variant7-variant9-variant13-variant23-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,37:74:99:988,0,911:19,18,18,19
chr1	163038613	.	C	A	770.75	PASS	AC=1;AF=0.625;AN=2;DP=1939;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,38:73:99:995,0,895:21,14,25,13
chr1	163038853	.	G	A	1101.79	PASS	AC=1;AF=0.625;AN=2;DP=1673;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,24:60:99:706,0,1106:12,24,8,16
chr1	163042020	.	C	CAA	589.59	PASS	AC=1;AF=0.977;AN=2;DP=742;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:105,0,290:4,3,0,3
chr1	163043088	.	A	G	373.32	PASS	AC=1;AF=0.677;AN=2;DP=695;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:356,0,323:8,3,9,4
chr1	163044892	.	TACACAC	TAC,T	142.73	PASS	AC=1,0;AF=0.902,0.085;AN=2;DP=386;FS=0;MQRankSum=0.751;ReadPosRankSum=-0.751;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:9:13:0,1,4,4
chr1	163045557	.	T	C	5599.46	PASS	AC=1;AF=0.977;AN=2;DP=6522;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:67,67:134:99:1676,0,1795:40,27,40,27
chr1	163045748	.	GA	G	7255.15	PASS	AC=1;AF=0.955;AN=2;DP=12099;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:122,143:265:99:3287,0,2660:58,64,68,75
chr1	163113566	.	A	T	2843.74	PASS	AC=1;AF=0.72;AN=2;DP=6090;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,83:147:99:2074,0,1538:31,33,43,40
chr1	163116030	.	CT	C,CTT	1573.59	PASS	AC=1,0;AF=0.477,0.023;AN=2;DP=18162;set=variant-filterInvariant2-variant3-variant5-variant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:326:99:98,124,50,54
chr1	163117599	.	T	TG	43.55	PASS	AC=2;AF=1;AN=2;DP=156;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:278,21,0:0,0,0,7
chr1	163187232	.	T	C	492.77	PASS	AC=1;AF=0.5;AN=2;DP=208;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant22-variant23-variant27-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:99:403,0,132:4,0,10,1
chr1	163187263	.	G	A	1299.95	PASS	AC=2;AF=0.793;AN=2;DP=1312;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:1071,98,0:0,0,26,7
chr1	163295678	.	A	C	2203.68	PASS	AC=1;AF=0.713;AN=2;DP=1697;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:647,0,438:12,2,17,1
chr1	163297896	.	G	A	191.9	PASS	AC=1;AF=0.5;AN=2;DP=196;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant9-variant23-variant27-variant34-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:237,0,190:5,0,6,2
chr1	163298768	.	T	TA,TAA	496.23	PASS	AC=1,0;AF=0.516,0.016;AN=2;DP=1703;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant36-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:41:99:9,18,4,10
chr1	163307944	.	T	C	288.25	PASS	AC=1;AF=0.641;AN=2;DP=780;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:224,0,265:2,6,4,5
chr1	163309219	.	A	T	2397.06	PASS	AC=1;AF=0.641;AN=2;DP=3066;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,34:72:99:827,0,882:15,23,18,16
chr1	163309302	.	C	T	1102.68	PASS	AC=2;AF=0.943;AN=2;DP=1784;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:995,84,0:0,0,7,21
chr1	163315350	.	G	C	224.75	PASS	AC=1;AF=0.672;AN=2;DP=251;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant13-variant14-variant15-variant16-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:139,0,232:6,1,4,0
chr1	163318934	.	A	C	85.7	PASS	AC=1;AF=0.5;AN=2;DP=131;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant9-variant23-variant27-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:243,0,262:1,7,3,6
chr1	164528870	.	T	C	193.39	PASS	AC=2;AF=0.963;AN=2;DP=238;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:246,21,0:0,0,1,6
chr1	164529120	.	G	A	2969.63	PASS	AC=1;AF=0.682;AN=2;DP=704;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant11-variant16-variant17-variant23-variant24-variant25-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:471,0,597:16,5,14,3
chr1	164529471	.	G	C	2634.49	PASS	AC=2;AF=0.633;AN=2;DP=1372;set=variant7-variant14-variant15-variant16-variant20-variant22-variant23-variant24-variant29-variant30-variant32-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2131,207,0:0,0,26,43
chr1	164529666	.	G	A	151.77	PASS	AC=2;AF=0.75;AN=2;DP=118;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant27-variant29-variant31-variant32-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:305,21,0:0,0,1,6
chr1	164532325	.	T	C	535.43	PASS	AC=1;AF=0.531;AN=2;DP=509;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant10-variant11-variant13-variant17-variant18-variant23-variant31-variant33-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:379,0,292:8,1,8,3
chr1	164559536	.	A	G	1363.49	PASS	AC=1;AF=0.622;AN=2;DP=1480;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:319,0,580:15,7,9,7
chr1	164789444	.	A	G	1591.72	PASS	AC=2;AF=1;AN=2;DP=1736;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:982,75,0:0,0,3,22
chr1	164816956	.	G	A	1406.19	PASS	AC=1;AF=0.636;AN=2;DP=1105;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant11-variant14-variant16-variant19-variant21-variant22-variant24-variant27-variant28-variant29-variant33-variant35-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,32:63:99:883,0,779:21,10,14,18
chr1	164818907	.	C	T	1243.65	PASS	AC=2;AF=0.989;AN=2;DP=1271;FS=0;MQ=60;MQRankSum=-1.357;ReadPosRankSum=-0.895;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:911,66,0:0,0,17,5
chr1	164819704	.	CA	CAA,CAAA,C	2729.85	PASS	AC=1,0,0;AF=0.563,0.021,0.042;AN=2;DP=3526;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant16-variant19-variant21-variant22-variant24-variant27-variant28-variant29-variant33-variant35-variant36-variant37-variant41-variant44	GT:DP:GQ:SB	0/1:121:99:46,18,45,12
chr1	164820162	.	A	G	2475.31	PASS	AC=1;AF=0.615;AN=2;DP=2114;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant19-variant21-variant22-variant24-variant27-variant28-variant29-variant33-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,28:47:99:769,0,496:5,14,10,18
chr1	165171813	.	T	A	371.21	PASS	AC=2;AF=0.625;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQ=60;set=variant17-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:824,75,0:0,0,14,11
chr1	165173216	.	A	G	2438.43	PASS	AC=2;AF=1;AN=2;DP=5627;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3517,326,0:0,0,51,58
chr1	165179874	.	C	A	915.95	PASS	AC=2;AF=0.625;AN=2;DP=281;FractionInformativeReads=1;MQ=60;set=variant17-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2097,189,0:0,0,39,24
chr1	165180089	.	T	A	2615.26	PASS	AC=2;AF=0.845;AN=2;DP=3758;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2341,213,0:0,0,32,39
chr1	165325741	.	C	A	515.89	PASS	AC=2;AF=0.556;AN=2;DP=853;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant8-variant9-variant10-variant11-variant13-variant19-variant20-variant24-variant27-variant30-variant34-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:1203,98,0:0,0,22,11
chr1	165370757	.	G	A	251.22	PASS	AC=1;AF=0.676;AN=2;DP=381;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:224,0,231:1,6,1,6
chr1	165375835	.	A	G	41.43	PASS	AC=2;AF=0.813;AN=2;DP=1326;MQ=60;set=filterInvariant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1407,138,0:0,0,27,19
chr1	165375895	.	A	C	410.32	PASS	AC=2;AF=0.813;AN=2;DP=2122;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1694,167,0:0,0,30,26
chr1	165376043	.	T	C	1442.4	PASS	AC=2;AF=0.813;AN=2;DP=5238;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:3996,419,0:0,0,72,68
chr1	165376227	.	C	CCG	889.36	PASS	AC=2;AF=0.757;AN=2;DP=1223;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1607,111,0:0,0,10,26
chr1	165376231	.	CTG	C	847.37	PASS	AC=2;AF=0.757;AN=2;DP=1124;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1549,105,0:0,0,10,25
chr1	165377389	.	T	C	903.3	PASS	AC=2;AF=1;AN=2;DP=1029;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1091,84,0:0,0,23,5
chr1	165378729	.	TACAC	TAC,T	228.31	PASS	AC=0,2;AF=0.58,0.42;AN=2;DP=1438;FS=0;set=Intersection	GT:DP:GQ:SB	2/2:32:97:0,0,20,12
chr1	165386567	.	C	T	71.22	PASS	AC=1;AF=0.594;AN=2;DP=513;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:180,0,237:0,6,0,5
chr1	165389285	.	C	G	3375.62	PASS	AC=1;AF=0.625;AN=2;DP=3731;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,41:86:99:1029,0,1179:17,28,18,23
chr1	165398115	.	T	C	1519.22	PASS	AC=1;AF=0.533;AN=2;DP=2462;MQ=60;set=variant-variant3-variant6-variant10-variant12-variant13-variant18-variant20-variant30-variant31-variant33-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:84,68:152:99:1569,0,2196:38,46,30,38
chr1	165406243	.	C	T	666.86	PASS	AC=1;AF=0.5;AN=2;DP=303;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant26-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,17:45:99:421,0,731:18,10,12,5
chr1	165406313	.	T	G	1121.25	PASS	AC=1;AF=0.5;AN=2;DP=594;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant26-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,32:88:99:717,0,1521:34,22,20,12
chr1	165414511	.	C	A	313.5	PASS	AC=1;AF=0.553;AN=2;DP=457;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant12-variant14-variant16-variant19-variant20-variant24-variant26-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:249,0,320:2,9,2,6
chr1	165513116	.	T	C	54.21	PASS	AC=2;AF=0.961;AN=2;DP=220;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:222,15,0:0,0,5,0
chr1	165513438	.	GAGCCCCTCCCC	G	872.91	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=0.9;MQ=60;MQRankSum=-0.428;QD=21.82;ReadPosRankSum=1.317;SOR=0.582;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,23:36:99:910,0,464:9,4,15,8
chr1	165513439	.	A	C	162.06	PASS	AC=1;AF=0.955;AN=2;DP=887;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,10:33:99:279,0,919:15,8,7,3
chr1	165513456	.	A	T,C	160.65	PASS	AC=2,0;AF=0.807,0.125;AN=2;DP=914;set=Intersection	GT:DP:GQ:SB	1/1:33:99:0,0,20,13
chr1	165513463	.	C	G	151.64	PASS	AC=1;AF=0.807;AN=2;DP=947;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:30,11:41:99:201,0,943:20,10,6,5
chr1	165513779	.	G	A	3367.19	PASS	AC=1;AF=0.5;AN=2;DP=254;FS=0.457;FractionInformativeReads=0.996;MQ=60;MQRankSum=2.339;QD=13.26;ReadPosRankSum=-0.815;SOR=0.741;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:126,127:253:99:3395,0,3366:64,62,66,61
chr1	165601215	.	G	C	1137.21	PASS	AC=2;AF=0.78;AN=2;DP=1328;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1545,114,0:0,0,34,4
chr1	165601566	.	T	C	474.2	PASS	AC=2;AF=0.636;AN=2;DP=394;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant13-variant19-variant32-variant34-variant35-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1291,117,0:0,0,11,28
chr1	165604991	.	T	C	10436.7	PASS	AC=1;AF=0.603;AN=2;DP=11211;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant16-variant18-variant19-variant21-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:206,170:376:99:3855,0,4848:115,91,88,82
chr1	165605209	.	C	G	544.15	PASS	AC=1;AF=0.635;AN=2;DP=973;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:269,0,527:1,14,0,8
chr1	165619424	.	G	T	91.91	PASS	AC=1;AF=0.881;AN=2;DP=401;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,128:2,4,1,2
chr1	165621129	.	CAAAAA	CAAAAAAAAAAA,CAAAAAAAAAAAA,CAAAAAAAAAAAAA,C,CAAAA,CAAAAAAAAAA,CAAAAAAAAAAAAAA	319.55	PASS	AC=1,0,0,0,0,0,0;AF=0.267,0.317,0.133,0.017,0.033,0.1,0.033;AN=2;DP=240;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant31-variant34-variant36-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:11:99:5,2,4,0
chr1	165621322	.	TATTATC	T	1339.4	PASS	AC=1;AF=0.55;AN=2;DP=1245;MQ=60;set=variant-variant4-variant6-variant7-variant12-variant15-variant17-variant19-variant22-variant23-variant25-variant27-variant29-variant30-variant34-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:1299,0,2283:10,19,11,22
chr1	165623411	.	C	G	158.49	PASS	AC=1;AF=0.5;AN=2;DP=127;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant13-variant28-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:294,0,277:8,1,8,2
chr1	165623451	.	C	T	451.03	PASS	AC=1;AF=0.5;AN=2;DP=298;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant13-variant28-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:604,0,526:15,3,17,5
chr1	165623693	.	G	C	548.24	PASS	AC=1;AF=0.5;AN=2;DP=252;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant13-variant28-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:258,0,414:5,9,5,6
chr1	165630475	.	C	T	350.4	PASS	AC=1;AF=0.793;AN=2;DP=981;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:316,0,174:5,2,8,3
chr1	165630495	.	T	C	570.72	PASS	AC=1;AF=0.793;AN=2;DP=1718;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:398,0,405:11,6,10,7
chr1	165630698	.	A	G	515.57	PASS	AC=1;AF=0.793;AN=2;DP=2595;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:758,0,733:12,17,8,19
chr1	165630798	.	A	AC	145.52	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=2.003;FractionInformativeReads=1;MQ=60;MQRankSum=-1.288;QD=8.08;ReadPosRankSum=1.555;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:183,0,224:3,7,4,4
chr1	165631670	.	T	G	745.35	PASS	AC=1;AF=0.5;AN=2;DP=499;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant13-variant28-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,24:63:99:717,0,1037:16,23,6,18
chr1	165649715	.	T	C	1380.69	PASS	AC=1;AF=0.5;AN=2;DP=426;FractionInformativeReads=1;MQ=60;set=variant15-variant16-variant23-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1258,0,1035:24,15,25,21
chr1	165649851	.	C	G	1527.15	PASS	AC=1;AF=0.5;AN=2;DP=137;FS=1.355;FractionInformativeReads=1;MQ=60;MQRankSum=-0.278;QD=11.15;ReadPosRankSum=-0.64;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,66:137:99:1555,0,1876:34,37,29,37
chr1	165651153	.	T	A	70.65	PASS	AC=1;AF=0.718;AN=2;DP=713;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:319,0,216:6,0,8,1
chr1	165651502	.	G	C	389.95	PASS	AC=1;AF=0.713;AN=2;DP=1263;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:796,0,483:5,13,5,22
chr1	165652273	.	A	G	2201.79	PASS	AC=1;AF=0.713;AN=2;DP=6147;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,75:149:99:1733,0,1896:42,32,44,31
chr1	165652445	.	A	G	1007.72	PASS	AC=1;AF=0.713;AN=2;DP=1812;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:665,0,874:4,23,4,18
chr1	165664693	.	T	C	180.88	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.666;QD=20.1;ReadPosRankSum=-0.067;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:56:209,0,56:0,2,1,6
chr1	165667829	.	CGGGCCGCGGGAGGGGCG	CGGGCCGCGGGAGGGGCGGGGCCGCGGGAGGGGCG,C	217.76	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=204;MQ=60;set=variant15-variant41	GT:DP:GQ:SB	0/2:75:99:12,18,18,27
chr1	165667980	.	C	T	1330.22	PASS	AC=2;AF=0.536;AN=2;DP=1707;MQ=60;set=variant2-variant4-variant6-variant8-variant9-variant10-variant12-variant13-variant24-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3148,333,0:0,0,56,56
chr1	165712555	.	GA	GAA,G	39.66	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=144;FS=0;MQ=60;set=filterInvariant2-variant12-variant31-variant41	GT:DP:GQ:SB	0/2:26:99:3,7,5,11
chr1	165737293	.	A	G	211.44	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.683;QD=23.49;ReadPosRankSum=1.422;SOR=1.402;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:240,0,106:3,0,6,0
chr1	165737704	.	C	G	3492.72	PASS	AC=2;AF=0.977;AN=2;DP=5910;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3658,359,0:0,0,66,54
chr1	165738311	.	A	T	1761.51	PASS	AC=1;AF=0.966;AN=2;DP=2297;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:690,0,783:13,15,13,13
chr1	165738463	.	G	C	606.79	PASS	AC=2;AF=0.977;AN=2;DP=1211;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1364,132,0:0,0,17,27
chr1	165859630	.	C	G	3811.89	PASS	AC=2;AF=1;AN=2;DP=6810;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:5036,467,0:0,0,87,68
chr1	166029970	.	T	C	1899.53	PASS	AC=2;AF=0.725;AN=2;DP=3599;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,86:87:99:2543,249,0:1,0,34,52
chr1	166030079	.	A	AAG	493.72	PASS	AC=2;AF=1;AN=2;DP=720;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:486,33,0:0,0,1,10
chr1	166030125	.	A	G	139.75	PASS	AC=1;AF=0.625;AN=2;DP=57;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant13-variant17-variant20-variant27-variant31-variant33-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:33:108,0,33:0,1,0,3
chr1	166039198	.	G	A	158.74	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.742;QD=22.68;ReadPosRankSum=-0.742;SOR=2.225;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:25:187,0,25:0,1,5,1
chr1	166039301	.	A	C	322.58	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.668;QD=14.66;ReadPosRankSum=1.135;SOR=0.836;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:351,0,241:6,3,9,4
chr1	166039898	.	C	G	1909.66	PASS	AC=1;AF=0.5;AN=2;DP=2974;MQ=60;set=variant-variant4-variant5-variant9-variant12-variant13-variant17-variant20-variant27-variant31-variant33-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:93,81:174:99:2188,0,2502:32,61,34,47
chr1	166124134	.	A	G	4307.23	PASS	AC=2;AF=1;AN=2;DP=6220;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3991,384,0:0,0,52,76
chr1	166136091	.	C	T	273.25	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.638;QD=10.93;ReadPosRankSum=0.693;SOR=0.498;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:301,0,211:6,4,8,7
chr1	166590254	.	A	G	632.23	PASS	AC=1;AF=0.545;AN=2;DP=581;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant12-variant13-variant15-variant20-variant33-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:819,0,852:8,23,4,22
chr1	166591043	.	T	C	1199.5	PASS	AC=1;AF=0.763;AN=2;DP=1082;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:539,0,413:11,3,12,5
chr1	166809602	.	C	G	2022.88	PASS	AC=1;AF=0.767;AN=2;DP=3110;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,39:77:99:842,0,948:16,22,20,19
chr1	166816108	.	T	A	415.3	PASS	AC=1;AF=0.594;AN=2;DP=1235;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant13-variant15-variant20-variant21-variant23-variant24-variant26-variant28-variant33-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,42:85:99:1123,0,1122:19,24,15,27
chr1	166818566	.	A	G	1906.96	PASS	AC=1;AF=0.577;AN=2;DP=2003;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant21-variant23-variant24-variant26-variant28-variant33-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,78:153:99:2092,0,1968:34,41,40,38
chr1	166822183	.	G	A	3242.36	PASS	AC=1;AF=0.725;AN=2;DP=4416;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,68:138:99:1690,0,1573:36,34,42,26
chr1	166825127	.	A	AC	10713.1	PASS	AC=1;AF=0.725;AN=2;DP=8889;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,102:205:99:3470,0,3369:49,54,47,55
chr1	166825837	.	A	G	3479.81	PASS	AC=1;AF=0.629;AN=2;DP=4154;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,47:106:99:1205,0,1599:40,19,32,15
chr1	166826773	.	C	T	11066.5	PASS	AC=1;AF=0.629;AN=2;DP=10834;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:169,153:322:99:3889,0,4289:75,94,68,85
chr1	166829522	.	C	T	473.81	PASS	AC=1;AF=0.5;AN=2;DP=173;MQ=60;set=variant8-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,24:53:99:584,0,800:18,11,11,13
chr1	166838866	.	A	AATTTT	342.9	PASS	AC=1;AF=0.604;AN=2;DP=663;MQ=60;set=variant2-variant3-variant4-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant33-variant34-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:276,0,427:2,4,0,7
chr1	166839174	.	G	A	525.04	PASS	AC=1;AF=0.542;AN=2;DP=485;MQ=60;set=variant2-variant3-variant9-variant23-variant24-variant26-variant28-variant33-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:423,0,200:4,6,6,11
chr1	166944256	.	TTC	T	79.63	PASS	AC=2;AF=0.625;AN=2;DP=123;MQ=60;set=variant2-variant3-variant9-variant13-variant15-variant20-variant26-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:349,24,0:0,0,6,2
chr1	166944273	.	T	A	432.12	PASS	AC=2;AF=0.75;AN=2;DP=71;MQ=60;set=variant9-variant15-variant26-variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:393,33,0:0,0,9,2
chr1	166958601	.	T	C	2644.54	PASS	AC=2;AF=0.6;AN=2;DP=2508;MQ=60;set=variant2-variant3-variant9-variant13-variant15-variant20-variant23-variant24-variant26-variant28-variant33-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,163:163:99:4929,488,0:0,0,76,87
chr1	166958710	.	T	G	1547.04	PASS	AC=1;AF=0.567;AN=2;DP=1590;MQ=60;set=variant2-variant3-variant9-variant13-variant15-variant20-variant23-variant24-variant26-variant28-variant33-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,45:102:99:1034,0,1503:24,33,16,29
chr1	166958937	.	G	T	855.99	PASS	AC=1;AF=0.577;AN=2;DP=514;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant13-variant15-variant20-variant23-variant26-variant28-variant33-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:539,0,533:11,8,12,7
chr1	166961857	.	G	A	903.34	PASS	AC=2;AF=0.636;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant9-variant10-variant12-variant13-variant14-variant18-variant20-variant21-variant23-variant26-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:454,42,0:0,0,10,4
chr1	166963234	.	T	C	2953.53	PASS	AC=2;AF=0.705;AN=2;DP=1365;MQ=60;set=variant3-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant23-variant26-variant31-variant32-variant33-variant34-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1820,171,0:0,0,35,22
chr1	166974420	.	T	C	1131.02	PASS	AC=2;AF=0.625;AN=2;DP=778;MQ=60;set=variant3-variant9-variant23-variant26-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2943,291,0:0,0,45,52
chr1	167022262	.	T	G	1359.32	PASS	AC=2;AF=0.657;AN=2;DP=938;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1059,93,0:0,0,20,11
chr1	167022381	.	A	G	1312.84	PASS	AC=1;AF=0.629;AN=2;DP=1005;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:267,0,394:6,8,6,5
chr1	167022569	.	G	A	508.66	PASS	AC=1;AF=0.5;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,17:40:99:439,0,581:11,12,12,5
chr1	167022701	.	A	G	446.78	PASS	AC=1;AF=0.558;AN=2;DP=953;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant15-variant16-variant17-variant18-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,17:40:99:443,0,617:10,13,8,9
chr1	167022920	.	C	G	1394.02	PASS	AC=2;AF=0.596;AN=2;DP=1856;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant15-variant16-variant17-variant18-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1825,182,0:0,0,36,25
chr1	167023082	.	G	GC	1133.46	PASS	AC=1;AF=0.558;AN=2;DP=1928;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant15-variant16-variant17-variant18-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,38:88:99:1012,0,1433:22,28,19,19
chr1	167023426	.	C	T	1246.12	PASS	AC=1;AF=0.558;AN=2;DP=2392;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant15-variant16-variant17-variant18-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,60:94:99:1549,0,850:14,20,26,34
chr1	167038159	.	C	T	457.98	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=5.478;FractionInformativeReads=1;MQ=60;MQRankSum=-1.207;QD=19.08;ReadPosRankSum=-1.651;SOR=0.116;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,17:24:99:486,0,235:7,0,13,4
chr1	167059462	.	G	C	2276.88	PASS	AC=1;AF=0.671;AN=2;DP=5065;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,74:147:99:1741,0,1867:44,29,39,35
chr1	167059575	.	G	T	4486.06	PASS	AC=1;AF=0.656;AN=2;DP=5841;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,89:195:99:2119,0,2507:45,61,41,48
chr1	167059830	.	A	G	961.77	PASS	AC=1;AF=0.661;AN=2;DP=774;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,16:21:99:633,0,264:1,4,6,10
chr1	167059833	.	A	G	961.77	PASS	AC=1;AF=0.676;AN=2;DP=942;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,14:19:99:633,0,264:1,4,5,9
chr1	167059976	.	T	G	50.98	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;QD=12.75;ReadPosRankSum=0.727;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:30:79,0,30:0,1,1,2
chr1	167063424	.	G	A	183.49	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=1.393;FractionInformativeReads=1;MQ=60;MQRankSum=0.642;QD=5.73;ReadPosRankSum=-0.214;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:212,0,560:10,10,5,7
chr1	167063520	.	A	G	571.36	PASS	AC=1;AF=0.611;AN=2;DP=631;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant11-variant12-variant13-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:187,0,274:4,6,3,5
chr1	167094889	.	GA	G	1264.59	PASS	AC=1;AF=0.569;AN=2;DP=923;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,21:33:99:751,0,441:10,2,14,7
chr1	167094908	.	G	T	506.3	PASS	AC=1;AF=0.625;AN=2;DP=921;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant26-variant27-variant31-variant32-variant33-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,14:40:99:424,0,913:17,9,12,2
chr1	167095163	.	G	C	1921.39	PASS	AC=1;AF=0.691;AN=2;DP=3669;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,59:117:99:1631,0,1437:28,30,26,33
chr1	167096931	.	A	C	831.78	PASS	AC=1;AF=0.531;AN=2;DP=2153;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant10-variant12-variant16-variant19-variant22-variant24-variant31-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,54:125:99:1249,0,1870:34,37,23,31
chr1	167097945	.	G	A	246.47	PASS	AC=1;AF=0.531;AN=2;DP=849;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant10-variant12-variant16-variant19-variant22-variant24-variant31-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:425,0,521:10,11,4,11
chr1	167098062	.	C	CT	701.73	PASS	AC=1;AF=0.531;AN=2;DP=875;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant10-variant12-variant16-variant19-variant22-variant24-variant31-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,15:43:99:505,0,1000:14,14,9,6
chr1	167098131	.	G	A	2525.7	PASS	AC=2;AF=0.857;AN=2;DP=3230;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2377,197,0:0,0,50,16
chr1	167098313	.	AT	A	4477.04	PASS	AC=1;AF=0.691;AN=2;DP=7075;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,94:174:99:1912,0,1528:39,41,44,50
chr1	167210785	.	G	C	10256.6	PASS	AC=1;AF=0.92;AN=2;DP=15246;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:144,159:303:99:3979,0,3730:59,85,67,92
chr1	167301095	.	C	T	3677.24	PASS	AC=1;AF=0.5;AN=2;DP=1802;MQ=60;set=variant4-variant7-variant10-variant13-variant16-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:124,120:244:99:2775,0,3035:67,57,63,57
chr1	167307350	.	GCCTGCCTCT	G	286.59	PASS	AC=1;AF=0.5;AN=2;DP=176;MQ=60;set=variant4-variant7-variant10-variant13-variant16-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,21:31:99:784,0,1009:6,4,14,7
chr1	167334943	.	A	G	427.42	PASS	AC=1;AF=0.5;AN=2;DP=43;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:389,0,296:2,8,1,10
chr1	167343729	.	G	A	56.77	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant16-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:243,0,110:0,3,0,6
chr1	167353258	.	AT	A	190.63	PASS	AC=2;AF=0.738;AN=2;DP=1145;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:705,75,0:0,0,5,20
chr1	167356569	.	A	G	329.29	PASS	AC=1;AF=0.5;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,34:70:99:857,0,934:11,25,10,24
chr1	167365409	.	C	T	657.63	PASS	AC=1;AF=0.5;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant13-variant16-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:530,0,418:10,4,14,4
chr1	167365713	.	T	G	378.75	PASS	AC=1;AF=0.5;AN=2;DP=149;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant13-variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:449,0,415:2,12,2,11
chr1	167367193	.	C	T	278.6	PASS	AC=1;AF=0.625;AN=2;DP=1287;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant12-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,27:46:99:835,0,530:15,4,22,5
chr1	167370560	.	G	C	78.96	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant13-variant16-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:185,0,186:5,1,5,1
chr1	167370988	.	C	A	133.71	PASS	AC=2;AF=0.817;AN=2;DP=216;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:402,27,0:0,0,2,7
chr1	167382374	.	A	C	817.91	PASS	AC=2;AF=0.75;AN=2;DP=4154;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2616,258,0:0,0,32,54
chr1	167382399	.	AGTGTGT	AGT,AGTGTGTGTGT,AGTGT,A	684.97	PASS	AC=2,0,0,0;AF=0.622,0.024,0.049,0.049;AN=2;DP=3189;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:40:99:0,0,6,34
chr1	167385178	.	G	GA,GAA	1117.67	PASS	AC=1,0;AF=0.5,0.088;AN=2;DP=9631;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant18-variant19-filterInvariant20-variant21-filterInvariant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-filterInvariant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:216:99:54,56,58,48
chr1	167385324	.	TAAAAA	TAAA,TAAAA,TAAAAAA,T	2220.98	PASS	AC=0,1,0,0;AF=0.182,0.489,0.011,0.011;AN=2;DP=6680;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:91:99:14,14,35,28
chr1	167386669	.	C	T	4471.87	PASS	AC=1;AF=0.5;AN=2;DP=1847;MQ=60;set=variant4-variant10-variant13-variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:200,132:332:99:2977,0,5087:101,99,62,70
chr1	167386736	.	T	C	4505.36	PASS	AC=1;AF=0.5;AN=2;DP=1785;MQ=60;set=variant4-variant10-variant13-variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:192,129:321:99:2859,0,4822:91,101,61,68
chr1	167388569	.	T	C	2419.95	PASS	AC=1;AF=0.5;AN=2;DP=430;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:116,110:226:99:2353,0,2783:57,59,56,54
chr1	167389405	.	CTT	C,CT	1467.81	PASS	AC=0,1;AF=0.261,0.568;AN=2;DP=4343;set=Intersection	GT:DP:GQ:SB	0/2:66:99:8,25,4,29
chr1	167389463	.	T	C	1559.58	PASS	AC=1;AF=0.943;AN=2;DP=1110;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:461,0,480:2,11,2,12
chr1	167389619	.	G	T	183.1	PASS	AC=1;AF=0.722;AN=2;DP=906;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:283,0,640:16,2,8,1
chr1	167389761	.	G	T	1346.28	PASS	AC=1;AF=0.722;AN=2;DP=2929;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,37:88:99:947,0,1296:21,30,19,18
chr1	167389822	.	C	T	2979.9	PASS	AC=1;AF=0.92;AN=2;DP=2946;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:42,35:77:99:922,0,1100:19,23,16,19
chr1	167391546	.	TG	T	1462.58	PASS	AC=1;AF=0.5;AN=2;DP=278;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,75:156:99:2563,0,2784:51,30,47,28
chr1	167391904	.	C	T	5833	PASS	AC=1;AF=0.92;AN=2;DP=5929;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:58,61:119:99:1702,0,1698:31,27,35,26
chr1	167392216	.	C	G	6848.75	PASS	AC=1;AF=0.932;AN=2;DP=7967;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:103,82:185:99:2143,0,2971:58,45,47,35
chr1	167392342	.	A	G	10035	PASS	AC=1;AF=0.898;AN=2;DP=12138;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:155,99:254:99:2546,0,4031:76,79,48,51
chr1	167392558	.	A	G	6359.56	PASS	AC=2;AF=0.989;AN=2;DP=7155;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,189:190:99:6197,531,0:1,0,88,101
chr1	167393128	.	T	C	673.47	PASS	AC=1;AF=0.625;AN=2;DP=1317;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant12-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:831,0,653:6,16,10,18
chr1	167394491	.	C	T	1426.92	PASS	AC=1;AF=0.943;AN=2;DP=2335;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:596,0,621:9,11,12,14
chr1	167395474	.	TAA	T,TA	11557.6	PASS	AC=1,0;AF=0.92,0.023;AN=2;DP=12429;MQ=60;set=Intersection	GT:DP:GQ:SB	0/1:225:99:44,56,57,68
chr1	167396643	.	A	ACT	8727.54	PASS	AC=2;AF=0.989;AN=2;DP=9178;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:8740,587,0:0,0,80,115
chr1	167399868	.	T	TAG	6447.04	PASS	AC=2;AF=0.989;AN=2;DP=6060;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:5696,382,0:0,0,80,47
chr1	167399962	.	T	C	6243.87	PASS	AC=2;AF=0.989;AN=2;DP=9534;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:6053,581,0:0,0,94,100
chr1	167400074	.	T	A	2962.52	PASS	AC=2;AF=0.852;AN=2;DP=4053;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:3012,252,0:0,0,37,47
chr1	167403504	.	A	G	513.47	PASS	AC=2;AF=0.886;AN=2;DP=812;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:720,57,0:0,0,4,15
chr1	167404078	.	G	A	525.81	PASS	AC=2;AF=0.886;AN=2;DP=2347;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1190,111,0:0,0,21,16
chr1	167404179	.	G	A	340.71	PASS	AC=2;AF=0.605;AN=2;DP=575;set=variant3-variant9-variant14-variant15-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant32-variant33-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:74:682,74,0:0,0,11,14
chr1	167408073	.	C	A	612.14	PASS	AC=2;AF=0.886;AN=2;DP=918;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:804,60,0:0,0,3,17
chr1	167487880	.	C	T	475.41	PASS	AC=1;AF=0.5;AN=2;DP=585;FractionInformativeReads=1;MQ=60;set=variant7-variant14-variant15-variant16-variant28-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:722,0,872:15,21,10,19
chr1	167487999	.	T	A	132.16	PASS	AC=1;AF=0.5;AN=2;DP=152;MQ=60;set=variant14-variant15-variant16-variant28-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:94:94,0,431:4,11,2,4
chr1	167510837	.	T	C	13965.6	PASS	AC=2;AF=0.955;AN=2;DP=15723;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,378:378:99:10954,1130,0:0,0,185,193
chr1	167510996	.	G	A	8941.82	PASS	AC=2;AF=0.955;AN=2;DP=10693;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,229:229:99:7055,685,0:0,0,102,127
chr1	167515272	.	T	C	1957.31	PASS	AC=2;AF=0.898;AN=2;DP=2714;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2023,195,0:0,0,40,25
chr1	167522453	.	C	T	515.73	PASS	AC=2;AF=0.89;AN=2;DP=692;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:181,15,0:0,0,3,2
chr1	167523188	.	T	A	43.71	PASS	AC=2;AF=0.825;AN=2;DP=149;MQ=60;set=variant-variant4-variant6-variant9-variant10-variant12-variant13-variant14-variant24-variant25-variant28-variant30-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:171,12,0:0,0,0,4
chr1	167653002	.	G	A	1776.99	PASS	AC=1;AF=0.5;AN=2;DP=302;MQ=60;set=variant5-variant18-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,38:80:99:1257,0,1296:34,8,35,3
chr1	167741309	.	A	G	252.18	PASS	AC=1;AF=0.5;AN=2;DP=44;FractionInformativeReads=1;MQ=60;set=variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:278,0,299:8,4,8,1
chr1	167758116	.	CTT	CT,C	111.93	PASS	AC=1,0;AF=0.61,0.037;AN=2;DP=984;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:23:99:11,3,6,3
chr1	167778843	.	G	A	2506.82	PASS	AC=1;AF=0.719;AN=2;DP=6188;MQ=60;set=variant-variant3-variant4-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,72:174:99:1852,0,2797:63,39,45,27
chr1	167806647	.	T	A	1421.72	PASS	AC=1;AF=0.803;AN=2;DP=2494;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,25:75:99:565,0,1335:19,31,8,17
chr1	167806696	.	T	C	1308.48	PASS	AC=1;AF=0.841;AN=2;DP=1514;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,9:45:99:220,0,1064:13,23,1,8
chr1	167817639	.	A	G	3206.75	PASS	AC=1;AF=0.769;AN=2;DP=3222;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,34:70:99:821,0,873:19,17,17,17
chr1	167823512	.	T	C	1678.05	PASS	AC=1;AF=0.667;AN=2;DP=1295;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:316,0,648:14,7,8,4
chr1	167823580	.	G	A	873.47	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=4.151;FractionInformativeReads=1;MQ=60;MQRankSum=-0.655;QD=10.28;ReadPosRankSum=0.471;SOR=0.375;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,41:85:99:902,0,1234:28,16,22,19
chr1	167825485	.	T	C	3035.54	PASS	AC=1;AF=0.654;AN=2;DP=2791;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant11-variant13-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,42:92:99:1070,0,1254:23,27,22,20
chr1	167830006	.	G	C	891.91	PASS	AC=1;AF=0.591;AN=2;DP=434;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant13-variant16-variant18-variant25-variant33-variant34-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,14:39:99:348,0,676:18,7,8,6
chr1	167844553	.	C	A	254.84	PASS	AC=1;AF=0.55;AN=2;DP=1130;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:847,0,899:5,14,5,17
chr1	167844559	.	G	A	799.37	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=1.511;FractionInformativeReads=1;MQ=60;MQRankSum=-1.676;QD=20.5;ReadPosRankSum=1.873;SOR=1.218;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:828,0,895:5,13,4,17
chr1	167844582	.	C	G	120.16	PASS	AC=1;AF=0.55;AN=2;DP=701;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,17:28:99:548,0,289:3,8,3,14
chr1	167847955	.	A	G	53.9	PASS	AC=1;AF=0.5;AN=2;DP=44;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:320,0,441:3,11,4,8
chr1	167849327	.	G	A	1012.88	PASS	AC=1;AF=0.5;AN=2;DP=764;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant9-variant10-variant11-variant18-variant19-variant21-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:923,0,818:20,10,23,10
chr1	167849414	.	A	G	1225.66	PASS	AC=1;AF=0.697;AN=2;DP=3960;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,52:119:99:1248,0,1729:41,26,25,27
chr1	167849701	.	G	A	587.46	PASS	AC=1;AF=0.5;AN=2;DP=259;FractionInformativeReads=1;MQ=60;set=variant10-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,39:87:99:945,0,1194:23,25,17,22
chr1	167849887	.	T	C	204.01	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=3.462;FractionInformativeReads=1;MQ=60;MQRankSum=0.017;QD=5.83;ReadPosRankSum=0.469;SOR=0.238;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,12:35:99:232,0,677:6,17,5,7
chr1	167871297	.	GA	G	694.63	PASS	AC=1;AF=0.524;AN=2;DP=1614;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant21-filterInvariant22-filterInvariant25-filterInvariant27-variant28-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,44:78:99:861,0,635:6,28,12,32
chr1	167893759	.	G	A	541.08	PASS	AC=1;AF=0.583;AN=2;DP=1251;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,20:29:99:588,0,211:3,6,11,9
chr1	167906239	.	A	C	2896.11	PASS	AC=2;AF=1;AN=2;DP=3745;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2524,243,0:0,0,46,35
chr1	167971979	.	G	T	49.73	PASS	AC=2;AF=0.845;AN=2;DP=161;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,0,5
chr1	167971980	.	C	G	49.73	PASS	AC=2;AF=0.845;AN=2;DP=155;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,0,5
chr1	167985326	.	TG	T	794.86	PASS	AC=1;AF=0.6;AN=2;DP=1543;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,36:53:99:1123,0,446:6,11,16,20
chr1	167988653	.	A	G	1178.39	PASS	AC=1;AF=0.543;AN=2;DP=2253;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant10-variant11-variant16-variant17-variant22-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,31:74:99:804,0,1144:27,16,20,11
chr1	167988709	.	A	C	1150.52	PASS	AC=1;AF=0.5;AN=2;DP=126;FS=2.273;FractionInformativeReads=1;MQ=60;MQRankSum=-1.958;QD=9.13;ReadPosRankSum=-2.317;SOR=0.514;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,55:126:99:1179,0,1867:41,30,29,26
chr1	167992344	.	T	A	549.51	PASS	AC=1;AF=0.617;AN=2;DP=1517;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,29:46:99:882,0,581:2,15,8,21
chr1	168025538	.	T	C	61.77	PASS	AC=1;AF=0.591;AN=2;DP=1506;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,22:35:99:565,0,241:7,6,8,14
chr1	168025628	.	G	A	164.93	PASS	AC=1;AF=0.583;AN=2;DP=733;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:143,0,242:5,5,1,5
chr1	168035104	.	G	C	55.31	PASS	AC=2;AF=0.976;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	168056724	.	A	G	1522.46	PASS	AC=1;AF=0.613;AN=2;DP=2351;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,42:80:99:1185,0,1106:25,13,29,13
chr1	168059866	.	A	G	945.07	PASS	AC=1;AF=0.597;AN=2;DP=3349;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,58:99:99:1439,0,866:20,21,27,31
chr1	168066659	.	A	G	180.9	PASS	AC=1;AF=0.581;AN=2;DP=696;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:177,0,245:5,6,0,5
chr1	168073601	.	C	A	168.07	PASS	AC=1;AF=0.565;AN=2;DP=1055;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:358,0,648:14,8,9,5
chr1	168074145	.	G	A	592.61	PASS	AC=1;AF=0.567;AN=2;DP=2373;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,40:72:99:1220,0,716:14,18,15,25
chr1	168106716	.	T	C	579.6	PASS	AC=2;AF=0.872;AN=2;DP=3665;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2751,254,0:0,0,31,54
chr1	168106783	.	C	T	264.95	PASS	AC=1;AF=0.5;AN=2;DP=578;MQ=60;set=variant-variant10-variant16-variant17-variant25-variant29-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:735,0,686:11,16,13,19
chr1	168153090	.	A	T	524.02	PASS	AC=1;AF=0.531;AN=2;DP=805;MQ=60;set=variant-variant5-variant7-variant8-variant10-variant14-variant16-variant17-variant18-variant25-variant28-variant29-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,35:57:99:1021,0,650:17,5,25,10
chr1	168153370	.	A	G	504.78	PASS	AC=1;AF=0.531;AN=2;DP=750;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant8-variant10-variant14-variant16-variant17-variant18-variant25-variant28-variant29-variant34-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,31:46:99:864,0,439:4,11,10,21
chr1	168165767	.	CTT	CT,C	577.41	PASS	AC=2,0;AF=0.613,0.016;AN=2;DP=1465;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant25-variant26-variant28-variant29-filterInvariant31-variant34-variant36-variant37-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:35:99:0,0,22,13
chr1	168165888	.	T	G	1612.69	PASS	AC=1;AF=0.542;AN=2;DP=1035;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant9-variant11-variant13-variant18-variant19-variant21-variant26-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,34:75:99:826,0,970:18,23,16,18
chr1	168169452	.	G	A	2811.72	PASS	AC=2;AF=0.677;AN=2;DP=7031;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,180:180:99:5545,538,0:0,0,82,98
chr1	168169846	.	TA	T	1100.55	PASS	AC=2;AF=0.635;AN=2;DP=2820;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant25-variant26-variant28-variant29-variant34-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2511,274,0:0,0,53,39
chr1	168200733	.	T	C	830.27	PASS	AC=1;AF=0.7;AN=2;DP=1618;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:580,0,702:18,9,16,7
chr1	168206118	.	GTTTAA	G	424.7	PASS	AC=1;AF=0.694;AN=2;DP=835;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:430,0,758:1,11,3,9
chr1	168208308	.	T	C	1152.78	PASS	AC=1;AF=0.694;AN=2;DP=4081;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,60:107:99:1497,0,1062:22,25,30,30
chr1	168212234	.	G	A	1058.32	PASS	AC=1;AF=0.694;AN=2;DP=2995;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,34:79:99:758,0,1125:21,24,18,16
chr1	168215499	.	C	A	6203.99	PASS	AC=1;AF=0.689;AN=2;DP=9990;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,119:219:99:4684,0,4438:53,47,58,61
chr1	168215505	.	A	G	6124.26	PASS	AC=1;AF=0.694;AN=2;DP=9938;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,123:226:99:4691,0,4499:55,48,64,59
chr1	168215575	.	G	A	5035.52	PASS	AC=1;AF=0.694;AN=2;DP=12462;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:133,144:277:99:3712,0,3286:63,70,70,74
chr1	168260377	.	A	AGTTTC	1630.64	PASS	AC=1;AF=0.563;AN=2;DP=1022;MQ=60;set=variant2-variant14-variant21-variant29-variant35-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,53:107:99:2171,0,3564:26,28,31,22
chr1	168262289	.	A	G	815.1	PASS	AC=2;AF=0.756;AN=2;DP=1109;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:958,69,0:0,0,20,3
chr1	168262299	.	C	T	869.6	PASS	AC=1;AF=0.688;AN=2;DP=1105;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:320,0,402:11,3,9,2
chr1	168262522	.	AGTGTGT	AGTGTGTGT,AGTGTGTGTGT,AGTGT,AGTGTTTGTGTGT,AGT,AGTGTGTGTGTGT,A	284.09	PASS	AC=0,0,0,1,0,0,0;AF=0.375,0.141,0.031,0.031,0.016,0.047,0.016;AN=2;DP=1262;set=variant3-variant4-variant6-variant7-variant8-variant9-filterInvariant10-filterInvariant12-filterInvariant13-variant16-filterInvariant17-filterInvariant18-variant19-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:30:99:6,14,4,6
chr1	168269523	.	C	T	851.86	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=2.236;FractionInformativeReads=1;MQ=60;MQRankSum=-1.255;QD=14.44;ReadPosRankSum=-2.122;SOR=0.387;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:880,0,755:17,10,17,15
chr1	168274201	.	G	A	787.99	PASS	AC=1;AF=0.744;AN=2;DP=4242;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,30:61:99:926,0,803:17,14,18,12
chr1	168278264	.	G	A	440.3	PASS	AC=2;AF=0.786;AN=2;DP=1575;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1468,123,0:0,0,9,32
chr1	168282491	.	T	C	1378.57	PASS	AC=1;AF=0.593;AN=2;DP=2394;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant10-variant11-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,39:82:99:953,0,1309:17,26,15,24
chr1	168510122	.	T	A	119.28	PASS	AC=1;AF=0.671;AN=2;DP=1268;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:645,0,783:21,2,19,5
chr1	168511155	.	T	C	634.81	PASS	AC=1;AF=0.679;AN=2;DP=4209;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,37:83:99:1077,0,1214:31,15,26,11
chr1	168513067	.	C	A,T	1717.89	PASS	AC=1,0;AF=0.5,0.031;AN=2;DP=2642;set=variant2-variant4-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant21-variant33-variant35-variant37-variant38-variant40-variant41	GT:DP:GQ:SB	0/1:143:99:57,40,22,24
chr1	168513109	.	A	G	1587.77	PASS	AC=1;AF=0.533;AN=2;DP=2595;set=variant2-variant4-variant8-variant9-variant13-variant14-variant15-variant18-variant21-variant33-variant35-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:119,38:157:99:592,0,2885:61,58,17,21
chr1	168545758	.	C	T	160.19	PASS	AC=1;AF=0.697;AN=2;DP=546;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:265,0,253:7,0,7,1
chr1	168545821	.	G	A	820.25	PASS	AC=1;AF=0.5;AN=2;DP=728;FractionInformativeReads=1;set=variant4-variant9-variant12-variant13-variant14-variant15-variant31-variant33-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,15:59:99:343,0,1181:32,12,13,2
chr1	168545864	.	A	G	1349.89	PASS	AC=1;AF=0.542;AN=2;DP=1349;set=variant2-variant4-variant8-variant9-variant13-variant14-variant15-variant21-variant23-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:95,41:136:99:951,0,2407:58,37,29,12
chr1	168545949	.	G	A	1485.07	PASS	AC=1;AF=0.775;AN=2;DP=6571;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,154:186:99:3888,0,416:12,20,76,78
chr1	168549422	.	C	T	599.05	PASS	AC=2;AF=0.731;AN=2;DP=7255;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5661,557,0:0,0,85,101
chr1	168664790	.	C	T	2297.72	PASS	AC=1;AF=0.5;AN=2;DP=177;FS=1.861;FractionInformativeReads=1;MQ=60;MQRankSum=0.349;QD=12.98;ReadPosRankSum=-1.017;SOR=0.626;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,96:177:99:2326,0,1936:43,38,47,49
chr1	168665747	.	C	CT	1052.4	PASS	AC=2;AF=0.75;AN=2;DP=2983;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3065,229,0:0,0,39,37
chr1	168665811	.	G	A	659.5	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=2.046;FractionInformativeReads=1;MQ=60;MQRankSum=-0.874;QD=9.03;ReadPosRankSum=-0.383;SOR=1.071;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,27:73:99:688,0,1196:21,25,10,17
chr1	168665974	.	T	C	79.93	PASS	AC=2;AF=0.75;AN=2;DP=414;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:281,24,0:0,0,1,7
chr1	168670136	.	TGTGTGTGTGG	T	1023.05	PASS	AC=1;AF=0.567;AN=2;DP=427;set=variant4-variant8-variant11-variant14-variant16-variant18-variant19-variant22-variant24-variant27-variant31-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:315,0,268:6,1,7,1
chr1	168670140	.	TGTGTGG	T	382.87	PASS	AC=1;AF=0.593;AN=2;DP=752;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:193,0,318:7,1,5,1
chr1	168670170	.	T	C	257.33	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.191;QD=10.29;ReadPosRankSum=2.136;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:286,0,472:11,4,7,3
chr1	168683719	.	A	G	1553.43	PASS	AC=1;AF=0.5;AN=2;DP=114;FS=3.631;FractionInformativeReads=1;MQ=60;MQRankSum=-1.732;QD=13.63;ReadPosRankSum=0.418;SOR=0.415;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,62:114:99:1582,0,1327:16,36,24,38
chr1	169075589	.	G	T	2215.3	PASS	AC=1;AF=0.5;AN=2;DP=529;MQ=60;set=variant8-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:117,84:201:99:1722,0,2760:67,50,47,37
chr1	169076200	.	C	G	895.44	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=0.871;FractionInformativeReads=0.988;MQ=60;MQRankSum=0.133;QD=11.19;ReadPosRankSum=0.528;SOR=0.849;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:924,0,1094:18,26,13,22
chr1	169080837	.	C	T	186.63	PASS	AC=1;AF=0.833;AN=2;DP=1325;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:379,0,471:5,12,3,11
chr1	169094100	.	T	A	717	PASS	AC=2;AF=0.797;AN=2;DP=2639;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2138,194,0:0,0,39,26
chr1	169099061	.	G	A	259.1	PASS	AC=1;AF=0.792;AN=2;DP=629;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,8:27:99:218,0,601:14,5,6,2
chr1	169101257	.	AT	ATT,ATTTTTTTTTT,A,ATTTT	908.41	PASS	AC=0,0,0,1;AF=0.486,0.014,0.057,0.014;AN=2;DP=6434;set=variant-variant3-variant4-variant5-variant7-filterInvariant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant27-variant28-variant29-variant32-variant33-filterInvariant34-variant35-filterInvariant36-variant37-variant38-variant39-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/4:96:99:17,27,18,34
chr1	169102223	.	G	C	333.34	PASS	AC=2;AF=0.661;AN=2;DP=873;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1044,93,0:0,0,8,23
chr1	169138027	.	A	G	872.04	PASS	AC=1;AF=0.717;AN=2;DP=2063;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,38:76:99:976,0,1001:16,22,20,18
chr1	169138307	.	C	A	597.69	PASS	AC=1;AF=0.717;AN=2;DP=1330;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,22:58:99:489,0,758:18,18,13,9
chr1	169138318	.	T	A	519.43	PASS	AC=1;AF=0.717;AN=2;DP=1366;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,22:58:99:488,0,758:18,18,12,10
chr1	169138868	.	C	T	303.58	PASS	AC=1;AF=0.717;AN=2;DP=886;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:427,0,415:4,10,5,11
chr1	169159866	.	G	T	483.35	PASS	AC=1;AF=0.743;AN=2;DP=1767;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,32:64:99:742,0,839:22,10,20,12
chr1	169200111	.	C	T	431.64	PASS	AC=1;AF=0.717;AN=2;DP=1217;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:473,0,514:10,12,10,14
chr1	169216412	.	C	G	222.17	PASS	AC=2;AF=1;AN=2;DP=1043;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1057,90,0:0,0,6,24
chr1	169256501	.	C	T	810.09	PASS	AC=1;AF=0.611;AN=2;DP=1262;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:530,0,677:16,10,15,7
chr1	169268077	.	T	C	160.43	PASS	AC=1;AF=0.62;AN=2;DP=316;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant32-variant34-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:209,0,311:3,8,0,6
chr1	169272299	.	A	T	531.79	PASS	AC=2;AF=0.657;AN=2;DP=2004;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1591,162,0:0,0,29,25
chr1	169272451	.	A	T	781.25	PASS	AC=2;AF=0.989;AN=2;DP=739;FractionInformativeReads=1;MQ=60;MQRankSum=0.366;ReadPosRankSum=0.805;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:655,45,0:0,0,2,13
chr1	169272453	.	G	A	781.25	PASS	AC=2;AF=0.989;AN=2;DP=700;FractionInformativeReads=1;MQ=60;MQRankSum=0.19;ReadPosRankSum=-1.822;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:45:655,45,0:0,0,1,13
chr1	169279196	.	T	TA	636.86	PASS	AC=2;AF=0.657;AN=2;DP=1608;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1235,126,0:0,0,23,18
chr1	169293721	.	G	A	622.72	PASS	AC=2;AF=0.657;AN=2;DP=2170;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1588,153,0:0,0,19,32
chr1	169337376	.	C	T	741.2	PASS	AC=1;AF=0.658;AN=2;DP=2667;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,38:70:99:931,0,934:19,13,20,18
chr1	169337638	.	C	T	200.7	PASS	AC=1;AF=0.658;AN=2;DP=772;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:295,0,391:4,10,3,8
chr1	169337677	.	A	ATTG	166.66	PASS	AC=1;AF=0.667;AN=2;DP=377;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:198,0,184:0,4,0,5
chr1	169338520	.	A	AT,ATT,ATTT	80.75	PASS	AC=1,0,0;AF=0.676,0.059,0.015;AN=2;DP=356;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:11:78:2,2,5,2
chr1	169345704	.	G	A	574.21	PASS	AC=1;AF=0.658;AN=2;DP=1970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,16:39:99:474,0,614:17,6,13,3
chr1	169346260	.	G	A	4560.58	PASS	AC=1;AF=0.5;AN=2;DP=345;FS=2.3;FractionInformativeReads=1;MQ=60;MQRankSum=1.099;QD=13.22;ReadPosRankSum=-0.125;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:160,185:345:99:4589,0,3934:87,73,106,79
chr1	169346528	.	AT	A	899.93	PASS	AC=1;AF=0.607;AN=2;DP=2200;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,48:77:99:1527,0,834:8,21,13,35
chr1	169349608	.	C	CTA	160.6	PASS	AC=1;AF=0.744;AN=2;DP=491;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:231,0,294:7,0,6,0
chr1	169351596	.	A	G	302.6	PASS	AC=2;AF=0.75;AN=2;DP=1540;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1123,101,0:0,0,11,23
chr1	169356833	.	G	T	376.01	PASS	AC=2;AF=0.75;AN=2;DP=1738;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1309,102,0:0,0,22,12
chr1	169364014	.	C	G	261.88	PASS	AC=2;AF=0.778;AN=2;DP=372;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:335,27,0:0,0,7,2
chr1	169365067	.	T	TTG	405.69	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=0;MQ=60;set=variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:178,0,482:16,1,7,0
chr1	169365116	.	GT	GTTT,GTT,G	922.5	PASS	AC=1,0,0;AF=0.459,0.149,0.041;AN=2;DP=2477;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:61:99:25,4,26,6
chr1	169390957	.	A	T	761.35	PASS	AC=1;AF=0.607;AN=2;DP=1508;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:767,0,964:15,18,10,16
chr1	169391154	.	A	G	1013.41	PASS	AC=2;AF=0.75;AN=2;DP=3255;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2749,258,0:0,0,41,45
chr1	169394226	.	A	G	723.97	PASS	AC=2;AF=0.791;AN=2;DP=2542;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1344,135,0:0,0,21,24
chr1	169433273	.	C	T	1469.71	PASS	AC=1;AF=0.5;AN=2;DP=908;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant18-variant27-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,62:128:99:1711,0,2017:51,15,47,15
chr1	169435027	.	C	T	4409.17	PASS	AC=2;AF=1;AN=2;DP=5149;FS=0;MQ=60;MQRankSum=-0.485;ReadPosRankSum=0.679;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4760,441,0:0,0,62,85
chr1	169455027	.	C	G	2599.17	PASS	AC=1;AF=0.5;AN=2;DP=160;FS=4.809;FractionInformativeReads=0.994;MQ=60;MQRankSum=-1.04;QD=16.24;ReadPosRankSum=1.068;SOR=0.498;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,98:159:99:2627,0,1622:35,26,48,50
chr1	169455435	.	G	C	2500.13	PASS	AC=1;AF=0.62;AN=2;DP=4476;set=variant2-variant6-variant8-variant12-variant13-variant17-variant18-variant19-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:95,81:176:99:1941,0,2327:47,48,42,39
chr1	169484552	.	T	G	732.26	PASS	AC=1;AF=0.667;AN=2;DP=568;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:361,0,420:10,3,10,2
chr1	169489512	.	A	G	189.18	PASS	AC=1;AF=0.548;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:179,0,261:7,4,5,1
chr1	169489585	.	T	C	456.32	PASS	AC=1;AF=0.548;AN=2;DP=818;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:580,0,543:13,6,15,5
chr1	169492676	.	C	T	857.2	PASS	AC=1;AF=0.548;AN=2;DP=1342;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:890,0,972:10,24,7,21
chr1	169494196	.	C	T	481.24	PASS	AC=1;AF=0.64;AN=2;DP=563;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:214,0,450:2,10,1,6
chr1	169498834	.	T	C	529.23	PASS	AC=2;AF=0.966;AN=2;DP=1339;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1004,90,0:0,0,20,10
chr1	169498975	.	T	C	2451.6	PASS	AC=1;AF=0.667;AN=2;DP=2493;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant32-variant33-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,55:108:99:1341,0,1424:25,28,29,26
chr1	169499190	.	A	G	151.77	PASS	AC=1;AF=0.66;AN=2;DP=223;FS=0;MQ=60;set=variant2-variant3-variant5-variant6-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:111,0,185:0,5,0,3
chr1	169499951	.	C	T	837.23	PASS	AC=1;AF=0.548;AN=2;DP=1839;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,42:92:99:1072,0,1252:28,22,23,19
chr1	169500210	.	T	C	842.75	PASS	AC=1;AF=0.5;AN=2;DP=351;MQ=60;set=variant17-variant19-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,32:76:99:729,0,1120:17,27,11,21
chr1	169510118	.	G	A	2734.14	PASS	AC=1;AF=0.5;AN=2;DP=1073;MQ=60;set=variant17-variant19-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:104,132:236:99:3864,0,2957:56,48,74,58
chr1	169510380	.	G	A	2999.82	PASS	AC=1;AF=0.553;AN=2;DP=6432;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant27-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:256,169:425:99:4117,0,4308:115,141,76,93
chr1	169510524	.	A	G	9631.44	PASS	AC=1;AF=0.674;AN=2;DP=6779;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant32-variant33-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:130,127:257:99:3425,0,3104:60,70,55,72
chr1	169511555	.	T	C	1421.72	PASS	AC=1;AF=0.548;AN=2;DP=3429;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,85:178:99:2105,0,2073:51,42,41,44
chr1	169511734	.	T	C	2444.1	PASS	AC=1;AF=0.548;AN=2;DP=3890;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,89:177:99:2169,0,2227:40,48,40,49
chr1	169511755	.	T	C	2259.47	PASS	AC=1;AF=0.548;AN=2;DP=3908;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:85,92:177:99:2346,0,2044:40,45,44,48
chr1	169511903	.	G	A	1252.42	PASS	AC=1;AF=0.5;AN=2;DP=131;FS=2.263;FractionInformativeReads=1;MQ=60;MQRankSum=-0.209;QD=9.56;ReadPosRankSum=-0.106;SOR=0.501;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:78,53:131:99:1281,0,1820:34,44,26,27
chr1	169512027	.	T	C	934.71	PASS	AC=1;AF=0.548;AN=2;DP=1927;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,33:84:99:934,0,1488:32,19,18,15
chr1	169512093	.	A	G	517.18	PASS	AC=1;AF=0.548;AN=2;DP=2349;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,43:123:99:996,0,2005:40,40,23,20
chr1	169512120	.	G	A	467.67	PASS	AC=1;AF=0.548;AN=2;DP=2371;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,46:126:99:1034,0,2043:38,42,24,22
chr1	169512497	.	C	A	719.86	PASS	AC=1;AF=0.548;AN=2;DP=967;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant27-variant32-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,10:42:99:182,0,771:12,20,3,7
chr1	169512524	.	C	T	685.64	PASS	AC=1;AF=0.654;AN=2;DP=843;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant30-variant32-variant33-variant34-variant36-variant39-variant40-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,5:31:89:89,0,672:9,17,1,4
chr1	169513436	.	C	A	287.8	PASS	AC=1;AF=0.525;AN=2;DP=428;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant26-variant32-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:226,0,297:8,2,6,5
chr1	169519049	.	T	C	4195.74	PASS	AC=2;AF=1;AN=2;DP=5894;FS=0;MQ=60;MQRankSum=-0.284;ReadPosRankSum=1.365;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3664,353,0:0,0,70,48
chr1	169525766	.	T	C	515.54	PASS	AC=1;AF=0.719;AN=2;DP=849;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:450,0,268:8,2,12,4
chr1	169525808	.	G	A	1070.75	PASS	AC=1;AF=0.565;AN=2;DP=1288;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant26-variant28-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,32:48:99:921,0,504:14,2,23,9
chr1	169528664	.	T	A	418.54	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=6.605;FractionInformativeReads=1;MQ=60;MQRankSum=0.412;QD=11.63;ReadPosRankSum=-1.838;SOR=0.123;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:447,0,647:2,17,5,12
chr1	169529755	.	A	G	1463.97	PASS	AC=1;AF=0.5;AN=2;DP=175;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.018;QD=8.37;ReadPosRankSum=-3.76;SOR=0.652;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:110,65:175:99:1492,0,2766:62,48,36,29
chr1	169529814	.	C	G	1949.51	PASS	AC=1;AF=0.5;AN=2;DP=195;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.338;QD=10;ReadPosRankSum=0.923;SOR=0.676;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:117,78:195:99:1978,0,3068:59,58,39,39
chr1	169551549	.	T	TAA,TA	193.17	PASS	AC=1,0;AF=0.357,0.333;AN=2;DP=206;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant37-variant38-filterInvariant39-variant41-variant42	GT:DP:GQ:SB	0/1:8:85:2,1,5,0
chr1	169551565	.	C	T	269.46	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=2.963;FractionInformativeReads=1;MQ=60;MQRankSum=-1.733;QD=19.25;ReadPosRankSum=-0.4;SOR=2.517;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:298,0,99:3,2,8,1
chr1	169551866	.	C	T	46.73	PASS	AC=1;AF=0.5;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.231;QD=9.35;ReadPosRankSum=0.358;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,101:0,3,0,2
chr1	169558873	.	G	A	177.76	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:76:76,0,120:1,3,0,3
chr1	169559326	.	G	A	1734.7	PASS	AC=1;AF=0.538;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant9-variant14-variant16-variant18-variant22-variant24-variant25-variant30-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:301,0,273:7,2,8,0
chr1	169560727	.	T	TA,TAA,TAAA	497.04	PASS	AC=0,1,0;AF=0.375,0.219,0.016;AN=2;DP=1488;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:39:99:5,12,9,13
chr1	169564130	.	T	G	1075.2	PASS	AC=1;AF=0.604;AN=2;DP=768;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:308,0,435:4,12,2,8
chr1	169565346	.	C	A	1005.34	PASS	AC=1;AF=0.615;AN=2;DP=1616;MQ=60;set=variant6-variant10-variant13-variant18-variant19-variant23-variant29-variant31-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,62:134:99:1514,0,1929:37,35,33,29
chr1	169565393	.	C	A	961.3	PASS	AC=1;AF=0.615;AN=2;DP=1387;MQ=60;set=variant6-variant10-variant13-variant18-variant19-variant23-variant29-variant31-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,55:120:99:1321,0,1590:30,35,21,34
chr1	169566308	.	G	A	1641.33	PASS	AC=1;AF=0.615;AN=2;DP=1611;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant13-variant18-variant19-variant23-variant29-variant31-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,60:124:99:2292,0,3502:25,39,32,28
chr1	169566313	.	C	T	2482.45	PASS	AC=1;AF=0.744;AN=2;DP=4949;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,60:122:99:2314,0,3499:24,38,31,29
chr1	169566326	.	G	A	1561.98	PASS	AC=1;AF=0.615;AN=2;DP=1471;MQ=60;set=variant6-variant10-variant13-variant18-variant19-variant23-variant29-variant31-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,56:116:99:1410,0,1541:22,38,27,29
chr1	169572547	.	G	C	98.16	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.436;QD=4.91;ReadPosRankSum=-1.397;SOR=0.252;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:126,0,624:2,13,1,4
chr1	169572549	.	G	C	98.36	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=0;MQ=60;set=variant16-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:126,0,624:2,13,1,4
chr1	169580885	.	C	T	1732.15	PASS	AC=1;AF=0.625;AN=2;DP=1004;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant14-variant16-variant18-variant20-variant24-variant26-variant29-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:718,0,754:16,13,15,16
chr1	169580972	.	C	CAT	174.2	PASS	AC=1;AF=0.707;AN=2;DP=1027;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:573,0,750:8,11,7,8
chr1	169599254	.	T	C	1810.55	PASS	AC=1;AF=0.697;AN=2;DP=4851;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,82:161:99:1919,0,2035:46,33,44,38
chr1	169659779	.	A	AT,AC	63.12	PASS	AC=0,1;AF=0.75,0.042;AN=2;DP=57;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant10-variant13-variant15-variant17-variant21-variant26-variant30-variant32-variant41-variant43	GT:DP:GQ:SB	0/2:6:99:2,1,3,0
chr1	169660939	.	T	C	1142.51	PASS	AC=1;AF=0.5;AN=2;DP=146;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,23:67:99:515,0,1135:17,27,7,16
chr1	169672595	.	GAA	G,GA	455.83	PASS	AC=0,1;AF=0.025,0.55;AN=2;DP=443;set=variant5-variant8-variant10-filterInvariant11-variant12-filterInvariant13-variant14-variant16-variant18-variant20-variant24-variant26-variant29-variant31-variant34-variant36-variant37-variant38-variant41-variant44	GT:DP:GQ:SB	0/2:19:99:2,11,1,5
chr1	169697218	.	G	A	1440.66	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=0.788;FractionInformativeReads=1;MQ=60;MQRankSum=-1.071;QD=14.7;ReadPosRankSum=-0.744;SOR=0.555;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,52:98:99:1469,0,1340:30,16,32,20
chr1	169698825	.	T	G	1549.79	PASS	AC=1;AF=0.857;AN=2;DP=5220;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,58:145:99:1376,0,2140:40,47,25,33
chr1	169698921	.	C	T	938.93	PASS	AC=1;AF=0.685;AN=2;DP=1726;MQ=60;set=variant-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,30:75:99:736,0,1416:10,35,9,21
chr1	169699819	.	G	A	342.57	PASS	AC=1;AF=0.685;AN=2;DP=1631;MQ=60;set=variant-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,16:47:99:402,0,936:8,23,5,11
chr1	169762807	.	T	G	2452.51	PASS	AC=1;AF=0.556;AN=2;DP=1510;MQ=60;set=variant11-variant13-variant15-variant25-variant27-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:87,78:165:99:2213,0,2387:55,32,50,28
chr1	169763139	.	T	C	285.87	PASS	AC=1;AF=0.814;AN=2;DP=764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:236,0,348:0,11,2,6
chr1	169764568	.	C	G	446.26	PASS	AC=1;AF=0.814;AN=2;DP=2435;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,33:58:99:928,0,720:14,11,18,15
chr1	169764992	.	T	TG	2629.44	PASS	AC=2;AF=1;AN=2;DP=3251;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:3284,247,0:0,0,33,47
chr1	169768033	.	T	C	1675.17	PASS	AC=1;AF=0.75;AN=2;DP=5945;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:77,77:154:99:1958,0,2025:44,33,42,35
chr1	169768080	.	C	A	1566.81	PASS	AC=1;AF=0.75;AN=2;DP=7576;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:95,85:180:99:2011,0,2382:51,44,43,42
chr1	169795214	.	CT	C	253.15	PASS	AC=1;AF=0.75;AN=2;DP=1285;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:247,0,177:4,4,1,9
chr1	169795276	.	A	C	74.49	PASS	AC=1;AF=0.821;AN=2;DP=418;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:16:205,0,16:0,1,1,5
chr1	169797127	.	G	A	2060.05	PASS	AC=1;AF=0.556;AN=2;DP=850;MQ=60;set=variant11-variant13-variant15-variant25-variant27-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,56:110:99:2070,0,2023:0,54,0,56
chr1	169819605	.	A	G	523.92	PASS	AC=1;AF=0.75;AN=2;DP=1720;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,15:19:85:432,0,85:2,2,5,10
chr1	169823296	.	G	GCTTGA,GCTTGACTTGA	1479.22	PASS	AC=1,0;AF=0.636,0.023;AN=2;DP=693;MQ=60;set=variant2-variant3-variant4-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant23-variant24-variant25-variant27-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	0/1:29:99:8,3,10,8
chr1	169823718	.	T	C	1903.15	PASS	AC=1;AF=0.75;AN=2;DP=5942;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:82,81:163:99:2100,0,1987:38,44,41,40
chr1	169831993	.	A	G	398.44	PASS	AC=1;AF=0.814;AN=2;DP=1665;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:287,0,567:3,14,5,7
chr1	169833822	.	T	C	235.4	PASS	AC=1;AF=0.814;AN=2;DP=1131;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:640,0,413:6,11,2,16
chr1	169835950	.	A	C	118.19	PASS	AC=1;AF=0.838;AN=2;DP=244;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:58:246,0,58:2,0,6,0
chr1	169839595	.	A	G	193.47	PASS	AC=1;AF=0.611;AN=2;DP=117;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant15-variant25-variant27-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:141,0,329:0,9,0,4
chr1	169847683	.	G	A	198.09	PASS	AC=1;AF=0.821;AN=2;DP=581;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:124,0,454:11,4,4,1
chr1	169847820	.	A	T	1037.48	PASS	AC=1;AF=0.5;AN=2;DP=106;FS=0;FractionInformativeReads=0.981;MQ=60;MQRankSum=-2.013;QD=9.79;ReadPosRankSum=1.463;SOR=0.727;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,46:104:99:1066,0,1420:31,27,25,21
chr1	169890574	.	T	A	6921.45	PASS	AC=2;AF=0.929;AN=2;DP=8574;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,205:205:99:6310,612,0:0,0,117,88
chr1	169890933	.	A	G	2525.83	PASS	AC=2;AF=0.929;AN=2;DP=3761;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2667,237,0:0,0,27,52
chr1	169891056	.	CT	C	249.25	PASS	AC=2;AF=0.936;AN=2;DP=632;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:418,45,0:0,0,2,13
chr1	169923041	.	G	GT	230.25	PASS	AC=1;AF=0.536;AN=2;DP=475;MQ=60;set=variant-variant3-variant4-variant12-variant19-variant20-variant24-variant25-variant31-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,24:37:99:587,0,286:9,4,16,8
chr1	169930434	.	C	T	566.52	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.553;QD=21.79;ReadPosRankSum=1.028;SOR=0.425;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:595,0,360:0,10,1,15
chr1	169941761	.	A	T	736.17	PASS	AC=2;AF=0.939;AN=2;DP=772;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:456,36,0:0,0,2,10
chr1	169947146	.	C	CA,CAA	2062.53	PASS	AC=2,0;AF=0.905,0.012;AN=2;DP=2037;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:58:68:2,2,40,14
chr1	169951748	.	A	G	359.74	PASS	AC=2;AF=0.939;AN=2;DP=464;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:483,36,0:0,0,11,1
chr1	169951997	.	C	T	764.05	PASS	AC=1;AF=0.528;AN=2;DP=546;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant9-variant12-variant19-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:438,0,420:4,10,4,12
chr1	169952385	.	G	T	755.04	PASS	AC=2;AF=0.929;AN=2;DP=833;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:951,87,0:0,0,19,10
chr1	169985796	.	A	G	370.45	PASS	AC=1;AF=0.529;AN=2;DP=405;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant9-variant12-variant19-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:288,0,600:2,15,2,8
chr1	170043395	.	A	AC	216.31	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.342;QD=12.72;ReadPosRankSum=-1.22;SOR=1.112;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:254,0,142:6,1,9,1
chr1	170043851	.	C	T	1261.87	PASS	AC=1;AF=0.536;AN=2;DP=716;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant13-variant14-variant16-variant31-variant32-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:707,0,514:7,12,10,16
chr1	170043904	.	G	C	415.48	PASS	AC=2;AF=0.763;AN=2;DP=1236;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:957,87,0:0,0,8,21
chr1	170115156	.	G	A	851.33	PASS	AC=1;AF=0.589;AN=2;DP=1843;MQ=60;set=variant-variant3-variant8-variant9-variant11-variant12-variant13-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,27:63:99:579,0,862:21,15,15,12
chr1	170120460	.	T	C	714.22	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=1.055;FractionInformativeReads=1;MQ=60;MQRankSum=1.488;QD=13.23;ReadPosRankSum=-0.548;SOR=0.976;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:742,0,568:12,12,17,13
chr1	170135510	.	T	C	479.86	PASS	AC=2;AF=0.8;AN=2;DP=596;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,3,1
chr1	170135669	.	C	T	1638.13	PASS	AC=1;AF=0.558;AN=2;DP=3655;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant11-variant12-variant14-variant16-variant17-variant21-variant23-variant25-variant26-variant28-variant29-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,87:159:99:2043,0,1731:44,28,52,35
chr1	170135760	.	T	C	2604.24	PASS	AC=1;AF=0.558;AN=2;DP=4733;set=variant-variant4-variant5-variant6-variant7-variant11-variant12-variant14-variant16-variant17-variant21-variant23-variant25-variant26-variant28-variant29-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,100:214:99:3849,0,6135:64,50,46,54
chr1	170135765	.	T	C	2532.3	PASS	AC=1;AF=0.543;AN=2;DP=4208;set=variant-variant4-variant5-variant6-variant7-variant11-variant12-variant16-variant17-variant21-variant23-variant25-variant26-variant28-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,100:216:99:3848,0,6157:64,52,47,53
chr1	170501385	.	A	C	2864.52	PASS	AC=2;AF=1;AN=2;DP=6948;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4508,458,0:0,0,76,77
chr1	170501456	.	C	T	2940.5	PASS	AC=1;AF=0.636;AN=2;DP=4815;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,66:127:99:1649,0,1379:27,34,32,34
chr1	170501521	.	AC	A	1297.52	PASS	AC=1;AF=0.5;AN=2;DP=507;MQ=60;set=variant6-variant7-variant8-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,26:58:99:876,0,1098:17,15,7,19
chr1	170502517	.	A	G	418.36	PASS	AC=2;AF=1;AN=2;DP=466;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:591,45,0:0,0,13,2
chr1	170514229	.	G	A	1819.13	PASS	AC=1;AF=0.636;AN=2;DP=1539;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:470,0,817:18,6,11,5
chr1	170521375	.	C	T	844.48	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.822;QD=12.42;ReadPosRankSum=-1.816;SOR=0.598;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:873,0,874:20,15,18,15
chr1	170632574	.	AG	A	686.09	PASS	AC=2;AF=1;AN=2;DP=1067;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:714,63,0:0,0,8,13
chr1	170632622	.	CTT	CT,C	453.66	PASS	AC=2,0;AF=0.988,0.012;AN=2;DP=658;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:19:57:0,0,8,11
chr1	170632939	.	G	A	380.57	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=4.301;FractionInformativeReads=1;MQ=60;MQRankSum=-1.65;QD=7.93;ReadPosRankSum=-0.075;SOR=1.049;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,18:48:99:409,0,710:13,17,11,7
chr1	170632965	.	G	A	475.77	PASS	AC=1;AF=0.5;AN=2;DP=664;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant16-variant19-variant27-variant29-variant30-variant31-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:359,0,570:11,13,9,7
chr1	170633066	.	C	G	1289.42	PASS	AC=2;AF=1;AN=2;DP=2018;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.141;ReadPosRankSum=0.042;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1134,105,0:0,0,18,17
chr1	170633111	.	T	G	1661.49	PASS	AC=2;AF=1;AN=2;DP=1723;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1890,126,0:0,0,21,20
chr1	170633119	.	T	G	1636.77	PASS	AC=2;AF=1;AN=2;DP=1701;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1890,126,0:0,0,22,20
chr1	170633142	.	C	G	1391.5	PASS	AC=2;AF=1;AN=2;DP=1470;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1935,135,0:0,0,23,22
chr1	170633173	.	A	G	814.9	PASS	AC=2;AF=1;AN=2;DP=1174;FS=0;MQ=60;MQRankSum=1.664;ReadPosRankSum=1.597;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1337,113,0:0,0,18,20
chr1	170633186	.	AT	A,ATT	370.38	PASS	AC=1,0;AF=0.548,0.286;AN=2;DP=1048;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:26:99:6,9,5,6
chr1	170633229	.	C	CCTCTCTCTCTCTCTCTCTCT,CCTCTCTCTCTCT,CCTCTCTCTCTCTCT,CCTCTCTCTCTCTCTCTCTCTCT,CCTCTCTCTCT,CCTCTCTCTCTCTCTCTCTCTCTCT,CCTCTCTCTCTCTCTCTCT	211.03	PASS	AC=0,1,0,0,0,0,0;AF=0.162,0.382,0.029,0.044,0.044,0.029,0.029;AN=2;DP=778;set=variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-filterInvariant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:15:99:0,5,5,5
chr1	170633322	.	C	T	706.62	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=8.552;FractionInformativeReads=1;MQ=60;MQRankSum=-2.157;QD=9.68;ReadPosRankSum=-0.999;SOR=1.737;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,36:73:99:735,0,1069:21,16,27,9
chr1	170695653	.	T	G	665.46	PASS	AC=1;AF=0.5;AN=2;DP=222;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,45:83:99:1135,0,944:21,17,19,26
chr1	170696474	.	A	C	2175.62	PASS	AC=2;AF=0.886;AN=2;DP=3190;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1481,152,0:0,0,22,29
chr1	170699674	.	T	C	404.63	PASS	AC=1;AF=0.5;AN=2;DP=241;FractionInformativeReads=1;MQ=60;set=variant9-variant13-variant16-variant18-variant29-variant30-variant32-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:394,0,638:2,15,2,11
chr1	170705618	.	A	C	2179.71	PASS	AC=2;AF=1;AN=2;DP=2069;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:935,96,0:0,0,13,19
chr1	170705685	.	CTATATATATATA	CTA,CTATATA,CTATA,C,CTATATATA,CTATATATATA	2009.71	PASS	AC=0,1,0,0,0,0;AF=0.167,0.571,0.083,0.024,0.012,0.012;AN=2;DP=1299;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:8:21:0,1,2,5
chr1	170705899	.	G	GT	521.98	PASS	AC=1;AF=0.521;AN=2;DP=1187;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant10-variant11-variant13-variant17-variant19-variant20-variant21-variant23-variant24-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,19:49:99:483,0,799:20,10,11,8
chr1	170706639	.	G	A	2383.1	PASS	AC=1;AF=0.5;AN=2;DP=373;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:103,94:197:99:2345,0,2528:48,55,44,50
chr1	170708637	.	C	G	901.64	PASS	AC=2;AF=0.886;AN=2;DP=1132;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:907,75,0:0,0,7,18
chr1	170927722	.	TGC	T	688.09	PASS	AC=1;AF=0.5;AN=2;DP=163;MQ=60;set=variant13-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:1223,0,2969:8,18,10,21
chr1	170927726	.	T	TA	688.26	PASS	AC=1;AF=0.5;AN=2;DP=154;FractionInformativeReads=1;MQ=60;set=variant13-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,31:56:99:1226,0,2936:8,17,10,21
chr1	170927729	.	A	AGTG	688.26	PASS	AC=1;AF=0.5;AN=2;DP=149;FractionInformativeReads=1;MQ=60;set=variant13-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:1226,0,2936:8,16,10,21
chr1	170941051	.	A	T	1605.37	PASS	AC=1;AF=0.5;AN=2;DP=206;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,63:121:99:1634,0,1399:22,36,21,42
chr1	170952685	.	C	T	635.08	PASS	AC=1;AF=0.5;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:663,0,710:7,21,10,18
chr1	170952776	.	G	A	150.33	PASS	AC=1;AF=0.5;AN=2;DP=30;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:179,0,251:0,8,0,5
chr1	170955959	.	C	A	440.79	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:469,0,385:1,10,1,12
chr1	170985569	.	C	T	142.17	PASS	AC=1;AF=0.5;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant10-variant13-variant16-variant28-variant29-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:218,0,232:1,6,1,6
chr1	170993442	.	GGGGTGTGTGTGTGT	GTGTGTGTGGGTGTGTGTGTGT,GTGTGGGTGTGTGTGTGT,G	65.49	PASS	AC=0,0,1;AF=0.167,0.167,0.167;AN=2;DP=30;FS=0;FractionInformativeReads=1;set=variant2-variant4-variant41	GT:DP:GQ:SB	0/3:15:99:7,0,8,0
chr1	170993444	.	G	GGT,T	156.36	PASS	AC=1,0;AF=0.707,0.034;AN=2;DP=268;set=variant2-variant4-variant8-variant9-variant11-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:15:99:9,0,6,0
chr1	171033067	.	A	G	49.73	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.026;QD=12.43;ReadPosRankSum=0;SOR=0.105;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:70:78,0,70:2,0,1,1
chr1	171061990	.	A	G	1110.12	PASS	AC=1;AF=0.586;AN=2;DP=2148;MQ=60;set=variant3-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,42:71:99:1141,0,756:9,20,15,27
chr1	171069959	.	A	G	43.52	PASS	AC=2;AF=0.675;AN=2;DP=100;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant10-variant11-variant12-variant16-variant18-variant21-variant23-variant24-variant27-variant28-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:82,6,0:0,0,2,0
chr1	171076966	.	G	A	1534.38	PASS	AC=2;AF=0.611;AN=2;DP=3136;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2778,279,0:0,0,40,53
chr1	171077198	.	G	A	2219.64	PASS	AC=2;AF=0.597;AN=2;DP=4940;MQ=60;set=variant3-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4081,399,0:0,0,76,57
chr1	171077372	.	C	G	1697.4	PASS	AC=1;AF=0.55;AN=2;DP=2900;MQ=60;set=variant6-variant9-variant10-variant11-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant28-variant29-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,60:103:99:1635,0,1147:16,27,24,36
chr1	171083174	.	C	T	3451.05	PASS	AC=1;AF=0.5;AN=2;DP=3028;MQ=60;set=variant3-variant12-variant13-variant19-variant20-variant21-variant27-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:112,86:198:99:2145,0,2961:64,48,51,35
chr1	171083537	.	T	C	774.87	PASS	AC=1;AF=0.5;AN=2;DP=506;MQ=60;set=variant3-variant12-variant13-variant19-variant20-variant21-variant27-variant32-variant33-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:693,0,641:4,19,6,17
chr1	171085314	.	A	AT	1110.08	PASS	AC=1;AF=0.5;AN=2;DP=676;MQ=60;set=variant3-variant12-variant13-variant19-variant20-variant21-variant27-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,19:46:99:537,0,825:13,14,12,7
chr1	171085385	.	T	C	524.82	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.474;QD=9.9;ReadPosRankSum=-1.188;SOR=0.816;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,24:53:99:553,0,797:13,16,10,14
chr1	171086956	.	A	G	387.8	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=3.771;FractionInformativeReads=1;MQ=60;MQRankSum=1.237;QD=14.36;ReadPosRankSum=0.024;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:416,0,331:5,8,3,11
chr1	171112490	.	C	T	578.15	PASS	AC=2;AF=0.588;AN=2;DP=1386;MQ=60;set=variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1389,123,0:0,0,10,31
chr1	171115398	.	G	A	91.48	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;QD=22.87;ReadPosRankSum=-0.727;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:120,0,34:1,0,2,1
chr1	171116801	.	G	A	1664.23	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.971;QD=11.8;ReadPosRankSum=-0.456;SOR=0.717;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:69,72:141:99:1692,0,1593:36,33,38,34
chr1	171130236	.	G	A	1613.1	PASS	AC=1;AF=0.5;AN=2;DP=1373;MQ=60;set=variant-variant10-variant12-variant13-variant15-variant16-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,77:142:99:1858,0,1688:41,24,47,30
chr1	171130346	.	G	A	2055.91	PASS	AC=1;AF=0.5;AN=2;DP=2194;MQ=60;set=variant-variant6-variant9-variant10-variant12-variant15-variant16-variant18-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,95:164:99:2467,0,1890:37,32,47,48
chr1	171130537	.	G	C	1452.41	PASS	AC=1;AF=0.5;AN=2;DP=421;MQ=60;set=variant13-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,71:132:99:1769,0,2338:19,42,25,46
chr1	171130539	.	G	C	1332.17	PASS	AC=1;AF=0.5;AN=2;DP=1503;MQ=60;set=variant-variant6-variant9-variant10-variant12-variant15-variant16-variant18-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,61:130:99:1522,0,2741:25,44,19,42
chr1	171130598	.	CACACA	C	836.45	PASS	AC=2;AF=0.556;AN=2;DP=1180;MQ=60;set=variant-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2121,148,0:0,0,10,39
chr1	171154303	.	A	C	349.49	PASS	AC=1;AF=0.556;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant8-variant9-variant11-variant14-variant18-variant21-variant24-variant25-variant26-variant31-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:74:74,0,87:2,2,2,1
chr1	171154327	.	CCTAA	C	157.63	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.103;QD=15.76;ReadPosRankSum=1.098;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:195,0,195:3,2,3,2
chr1	171154378	.	A	G	258.2	PASS	AC=1;AF=0.556;AN=2;DP=227;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant14-variant18-variant30-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:222,0,263:6,5,6,4
chr1	171154802	.	C	T	1016.83	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.825;QD=13.04;ReadPosRankSum=-0.025;SOR=0.732;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:1045,0,1089:27,13,26,12
chr1	171155103	.	C	T	447.77	PASS	AC=2;AF=0.714;AN=2;DP=1086;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:1108,98,0:0,0,8,25
chr1	171162438	.	C	T	488.61	PASS	AC=1;AF=0.5;AN=2;DP=268;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:733,0,522:13,8,19,5
chr1	171162551	.	T	TGAC	2184.29	PASS	AC=1;AF=0.5;AN=2;DP=599;MQ=60;set=variant6-variant8-variant9-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,46:93:99:1832,0,2203:22,25,22,24
chr1	171162583	.	T	C	1049.58	PASS	AC=1;AF=0.5;AN=2;DP=523;MQ=60;set=variant6-variant8-variant9-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:1137,0,1018:19,26,18,24
chr1	171165802	.	TG	T	677.69	PASS	AC=1;AF=0.5;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,21:52:99:693,0,1095:20,11,13,8
chr1	171168302	.	G	C	99.34	PASS	AC=2;AF=0.697;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:401,42,0:0,0,8,6
chr1	171168584	.	C	T	1764.53	PASS	AC=2;AF=0.633;AN=2;DP=2674;MQ=60;set=variant-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:3178,217,0:0,0,28,44
chr1	171168585	.	A	G	1764.53	PASS	AC=2;AF=0.686;AN=2;DP=3120;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:3178,217,0:0,0,27,41
chr1	171174531	.	A	G	906.57	PASS	AC=1;AF=0.591;AN=2;DP=955;MQ=60;set=variant-variant10-variant12-variant15-variant18-variant27-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,49:95:99:1289,0,1073:25,21,25,24
chr1	171178257	.	C	CT	318.21	PASS	AC=1;AF=0.583;AN=2;DP=468;MQ=60;set=variant-variant10-variant12-variant13-variant15-variant18-variant27-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:349,0,289:9,3,8,6
chr1	171178490	.	C	T	1536.44	PASS	AC=1;AF=0.583;AN=2;DP=1277;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant12-variant13-variant15-variant18-variant27-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:1257,0,1125:23,19,23,17
chr1	171179351	.	A	T	1188.67	PASS	AC=1;AF=0.583;AN=2;DP=1038;MQ=60;set=variant-variant10-variant12-variant13-variant15-variant18-variant27-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,39:75:99:1228,0,1074:18,18,16,23
chr1	171179779	.	A	G	2483.19	PASS	AC=1;AF=0.5;AN=2;DP=1081;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:103,83:186:99:2025,0,2885:37,66,29,54
chr1	171180071	.	A	G	1299.84	PASS	AC=1;AF=0.5;AN=2;DP=355;set=variant6-variant9-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,16:53:99:528,0,1071:14,23,7,9
chr1	171180201	.	T	C	1024.18	PASS	AC=1;AF=0.5;AN=2;DP=392;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,18:63:99:377,0,1174:19,26,7,11
chr1	171217691	.	C	A	305.1	PASS	AC=1;AF=0.583;AN=2;DP=306;MQ=60;set=variant-variant10-variant12-variant13-variant15-variant18-variant27-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,10:31:99:233,0,593:9,12,6,4
chr1	171301033	.	C	G	1008.33	PASS	AC=1;AF=0.588;AN=2;DP=1906;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,20:51:99:509,0,934:6,25,5,15
chr1	171301805	.	G	T	922.52	PASS	AC=1;AF=0.5;AN=2;DP=140;FractionInformativeReads=1;MQ=60;MQRankSum=-0.306;set=variant7-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,37:70:99:1070,0,866:23,10,27,10
chr1	171303690	.	T	C	1044.36	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=2.948;FractionInformativeReads=1;MQ=60;MQRankSum=1.123;QD=12.74;ReadPosRankSum=2.145;SOR=0.837;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,43:82:99:1073,0,921:18,21,24,19
chr1	171303925	.	C	T	1054.15	PASS	AC=1;AF=0.588;AN=2;DP=4308;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,54:119:99:1254,0,1708:26,39,23,31
chr1	171311003	.	A	C	1248.56	PASS	AC=1;AF=0.649;AN=2;DP=4565;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,59:125:99:1463,0,1732:32,34,28,31
chr1	171483979	.	A	G	131.86	PASS	AC=1;AF=0.5;AN=2;DP=131;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant21-variant26-variant32-variant33-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:195,0,143:1,4,1,4
chr1	171486912	.	G	A	596.05	PASS	AC=1;AF=0.5;AN=2;DP=858;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant21-variant22-variant26-variant32-variant33-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,35:80:99:914,0,1249:18,27,11,24
chr1	171496895	.	A	G	1134.93	PASS	AC=1;AF=0.86;AN=2;DP=1587;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:441,0,287:6,8,11,6
chr1	171509058	.	G	A	668.95	PASS	AC=1;AF=0.86;AN=2;DP=971;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:462,0,312:9,2,12,2
chr1	171509327	.	G	A	3422.33	PASS	AC=1;AF=0.86;AN=2;DP=5373;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,81:136:99:1867,0,1341:28,27,36,45
chr1	171511039	.	C	G	2780.26	PASS	AC=1;AF=0.86;AN=2;DP=4353;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,51:89:99:1368,0,1025:16,22,28,23
chr1	171514731	.	C	G	984.04	PASS	AC=1;AF=0.86;AN=2;DP=1735;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:372,0,358:5,9,7,9
chr1	171514848	.	TTTTATTTA	TTTTATTTATTTA,T	51.95	PASS	AC=2,0;AF=0.708,0.167;AN=2;DP=125;FS=0;MQ=60;set=variant3-variant7-variant15-variant21-variant25-variant27-variant32-variant34-variant35-variant38-variant41-variant42	GT:DP:GQ:SB	1/1:2:6:0,0,1,1
chr1	171519487	.	A	C	888.29	PASS	AC=1;AF=0.86;AN=2;DP=1163;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:496,0,309:3,10,3,14
chr1	171526570	.	G	A	1493.54	PASS	AC=1;AF=0.86;AN=2;DP=9043;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,105:213:99:2430,0,2635:51,57,51,54
chr1	171527322	.	A	G	656.7	PASS	AC=1;AF=0.86;AN=2;DP=1206;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,14:37:99:394,0,795:3,20,3,11
chr1	171535309	.	T	C	604.05	PASS	AC=1;AF=0.5;AN=2;DP=361;MQ=60;set=variant4-variant11-variant21-variant22-variant26-variant32-variant33-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,12:42:99:266,0,931:23,7,9,3
chr1	171535573	.	T	C	843.92	PASS	AC=1;AF=0.5;AN=2;DP=573;MQ=60;set=variant4-variant11-variant21-variant22-variant26-variant32-variant33-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:848,0,731:9,17,11,21
chr1	171546833	.	C	A	1232.98	PASS	AC=1;AF=0.7;AN=2;DP=1213;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:335,0,488:3,13,3,9
chr1	171548868	.	T	C	540.57	PASS	AC=1;AF=0.869;AN=2;DP=790;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:162,0,431:10,5,4,1
chr1	171556165	.	G	C	5483.96	PASS	AC=1;AF=0.837;AN=2;DP=7132;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,55:142:99:1238,0,2287:50,37,33,22
chr1	171558447	.	GTT	GT,GTTT,G	139.99	PASS	AC=0,1,0;AF=0.367,0.117,0.033;AN=2;DP=862;set=variant-variant3-variant5-variant7-filterInvariant12-variant13-variant14-variant16-variant18-variant19-variant21-filterInvariant22-variant23-variant25-filterInvariant26-variant27-variant28-filterInvariant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:19:43:6,0,7,6
chr1	171558516	.	C	T	1488.77	PASS	AC=1;AF=0.837;AN=2;DP=2668;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:904,0,802:16,10,21,10
chr1	171561203	.	T	G	1574.64	PASS	AC=1;AF=0.5;AN=2;DP=1723;MQ=60;set=variant4-variant11-variant21-variant22-variant26-variant32-variant33-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:121,81:202:99:1711,0,2895:61,60,38,43
chr1	171561225	.	C	T	6025.49	PASS	AC=1;AF=0.837;AN=2;DP=6672;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,63:182:99:1365,0,2903:59,60,26,37
chr1	171561250	.	G	A	5055.33	PASS	AC=1;AF=0.837;AN=2;DP=5525;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,46:152:99:970,0,2775:52,54,21,25
chr1	171561307	.	A	G	3784.04	PASS	AC=1;AF=0.837;AN=2;DP=3850;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,33:92:99:1015,0,1753:29,30,17,16
chr1	171607702	.	C	T	3022.6	PASS	AC=1;AF=0.845;AN=2;DP=4371;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,58:111:99:1369,0,1337:30,23,34,24
chr1	171672613	.	A	C	788.59	PASS	AC=2;AF=1;AN=2;DP=1885;FS=0;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1033,93,0:0,0,24,7
chr1	171810960	.	A	G	899.66	PASS	AC=1;AF=0.694;AN=2;DP=1107;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:608,0,436:1,12,3,15
chr1	171956803	.	C	T	1468.48	PASS	AC=1;AF=0.536;AN=2;DP=1340;MQ=60;set=variant3-variant11-variant12-variant13-variant16-variant18-variant21-variant23-variant26-variant33-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,36:88:99:891,0,1362:27,25,23,13
chr1	172001666	.	CTTTTTTTTTT	CTTTTTTTT,CTT,CT,CTTT,CTTTTTT,CTTTTTTTTT,C,CTTTTTTTTTTT	62.53	PASS	AC=0,1,0,0,0,0,0,0;AF=0.086,0.138,0.138,0.069,0.017,0.017,0.052,0.034;AN=2;DP=1281;set=variant2-variant3-filterInvariant4-variant5-variant9-variant11-variant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-variant18-variant22-variant23-variant25-filterInvariant26-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant39-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:25:99:2,4,3,16
chr1	172011059	.	G	A	913.76	PASS	AC=1;AF=0.63;AN=2;DP=757;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant10-variant11-variant12-variant16-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:163,0,374:9,5,4,3
chr1	172038079	.	T	C	1020.73	PASS	AC=1;AF=0.589;AN=2;DP=2956;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant30-variant31-variant33-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,34:76:99:812,0,1055:18,24,15,19
chr1	172222629	.	TCTCTCCTCTCCTCTCCTCTC	TCTCTC,TCTCTCCTCTC,T,TCTCTCCTCTCCTCTC	508.02	PASS	AC=0,0,0,1;AF=0.439,0.045,0.076,0.167;AN=2;DP=672;set=variant3-variant5-variant6-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:6:43:0,1,0,5
chr1	172280452	.	ATG	A,ATGTGTGTG,ATGTG,ATGTGTGTGTG,ATGTGTG	68.53	PASS	AC=1,0,0,0,0;AF=0.236,0.222,0.056,0.014,0.028;AN=2;DP=4723;set=filterInvariant-variant2-filterInvariant4-filterInvariant5-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant14-variant15-variant16-filterInvariant19-filterInvariant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-filterInvariant28-variant29-filterInvariant31-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant38-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:78:99:17,49,2,10
chr1	172308238	.	C	T	1504.45	PASS	AC=2;AF=0.574;AN=2;DP=4193;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4008,431,0:0,0,71,73
chr1	172356437	.	A	G	1961.73	PASS	AC=2;AF=1;AN=2;DP=3491;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2455,240,0:0,0,30,50
chr1	172376809	.	T	C	559.65	PASS	AC=1;AF=0.548;AN=2;DP=1059;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant14-variant18-variant20-variant25-variant28-variant29-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:645,0,712:18,9,17,8
chr1	172377262	.	G	A	1625.81	PASS	AC=1;AF=0.593;AN=2;DP=2512;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant18-variant20-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,42:76:99:1322,0,1072:26,8,30,12
chr1	172378884	.	G	GT	4450.72	PASS	AC=1;AF=0.548;AN=2;DP=7667;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant14-variant18-variant20-variant25-variant28-variant29-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:182,143:325:99:3595,0,4792:90,92,75,68
chr1	172380678	.	TA	TAA,T	1483.15	PASS	AC=1,0;AF=0.263,0.238;AN=2;DP=11214;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant10-filterInvariant11-variant12-variant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-variant20-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:237:99:80,56,50,51
chr1	172380875	.	C	A	5065.23	PASS	AC=2;AF=0.932;AN=2;DP=18344;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,407:407:99:12137,1218,0:0,0,192,215
chr1	172381181	.	T	TTG	4337.85	PASS	AC=1;AF=0.593;AN=2;DP=8795;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant18-variant20-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,130:246:99:3802,0,3553:53,63,60,70
chr1	172399346	.	TAA	T	883.27	PASS	AC=1;AF=0.545;AN=2;DP=1315;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant14-variant18-variant20-variant25-variant28-variant29-variant33-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:1183,0,1088:18,10,21,10
chr1	172410492	.	TACACACACACACACACACAC	TACACACACACAC,TACACAC,TACACACAC,T,TACACACACACACAC,TACACACACAC,TACACACACACACACACAC,TACACACACACACACAC	587.34	PASS	AC=2,0,0,0,0,0,0,0;AF=0.279,0.384,0.128,0.012,0.047,0.012,0.023,0.012;AN=2;DP=935;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:13:40:0,0,12,1
chr1	172411496	.	A	G	207.34	PASS	AC=2;AF=0.907;AN=2;DP=1405;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1356,114,0:0,0,23,15
chr1	172411768	.	T	C	2466.6	PASS	AC=1;AF=0.568;AN=2;DP=4135;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant18-variant20-variant22-variant24-variant25-variant28-variant29-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:100,80:180:99:1953,0,2507:47,53,38,42
chr1	172412845	.	C	A	1200.25	PASS	AC=1;AF=0.568;AN=2;DP=2470;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant18-variant20-variant22-variant24-variant25-variant28-variant29-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,52:96:99:1293,0,1236:17,27,16,36
chr1	172417468	.	G	C	494.51	PASS	AC=1;AF=0.5;AN=2;DP=145;FractionInformativeReads=1;MQ=60;set=variant13-variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,17:47:99:405,0,769:18,12,9,8
chr1	172417781	.	A	G	79.71	PASS	AC=2;AF=0.905;AN=2;DP=486;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:480,36,0:0,0,2,10
chr1	172422206	.	C	A	1248.67	PASS	AC=1;AF=0.5;AN=2;DP=340;MQ=60;set=variant13-variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,72:121:99:2008,0,1875:29,20,42,30
chr1	172422209	.	C	T	1586.92	PASS	AC=1;AF=0.587;AN=2;DP=2919;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant14-variant18-variant20-variant22-variant24-variant25-variant28-variant29-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,50:124:99:1275,0,2928:43,31,30,20
chr1	172422649	.	A	G	176.95	PASS	AC=1;AF=0.605;AN=2;DP=202;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant18-variant22-variant24-variant25-variant28-variant33-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:178,0,231:2,6,1,5
chr1	172431210	.	G	A	562.57	PASS	AC=1;AF=0.878;AN=2;DP=895;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:604,0,296:9,1,14,4
chr1	172434375	.	G	A	365.41	PASS	AC=1;AF=0.869;AN=2;DP=1133;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:410,0,265:7,5,11,4
chr1	172437592	.	G	A	1068.44	PASS	AC=1;AF=0.869;AN=2;DP=3812;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,42:78:99:1005,0,884:21,15,23,19
chr1	172501643	.	T	C	1846.42	PASS	AC=1;AF=0.568;AN=2;DP=3902;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant24-variant25-variant27-variant28-variant31-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:77,74:151:99:1763,0,1895:49,28,43,31
chr1	172502340	.	T	C	450.19	PASS	AC=1;AF=0.614;AN=2;DP=734;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant24-variant25-variant27-variant28-variant31-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:381,0,393:10,4,9,5
chr1	172502479	.	T	C	1220.4	PASS	AC=1;AF=0.784;AN=2;DP=4066;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,50:124:99:1274,0,1864:45,29,28,22
chr1	172502727	.	TA	T	1219.48	PASS	AC=1;AF=0.568;AN=2;DP=1772;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant24-variant25-variant27-variant28-variant31-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,43:78:99:1497,0,1173:14,21,18,25
chr1	172522602	.	G	A	133.71	PASS	AC=1;AF=0.595;AN=2;DP=224;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant16-variant19-variant23-variant24-variant25-variant27-variant28-variant31-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,10:12:56:281,0,56:0,2,3,7
chr1	172547465	.	A	G	785.2	PASS	AC=1;AF=0.565;AN=2;DP=2104;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant19-variant23-variant24-variant25-variant27-variant28-variant31-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:854,0,931:19,20,21,18
chr1	172554867	.	T	A	124.45	PASS	AC=1;AF=0.575;AN=2;DP=179;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant16-variant19-variant23-variant24-variant25-variant27-variant28-variant31-variant35-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:138,0,285:7,1,4,1
chr1	172634589	.	TG	T	529.37	PASS	AC=1;AF=0.5;AN=2;DP=479;MQ=60;set=variant8-variant10-variant15-variant23-variant30-variant31-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:780,0,1082:21,10,14,10
chr1	172634734	.	T	C	3710.21	PASS	AC=2;AF=1;AN=2;DP=4637;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3099,282,0:0,0,54,40
chr1	172635756	.	GGTGTGT	GGTGT,GGTGTGTGT,G,GGTGTGTGTGT	185.71	PASS	AC=0,1,0,0;AF=0.197,0.242,0.015,0.045;AN=2;DP=1385;set=variant-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant16-variant17-variant21-variant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-variant31-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:33:99:4,3,12,14
chr1	173153228	.	A	T	3586.78	PASS	AC=1;AF=0.5;AN=2;DP=1687;MQ=60;set=variant8-variant13-variant14-variant28-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:166,123:289:99:3247,0,4507:93,73,57,66
chr1	173153468	.	A	G	2607.94	PASS	AC=1;AF=0.5;AN=2;DP=1158;MQ=60;set=variant8-variant13-variant14-variant28-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:99,101:200:99:2911,0,2857:45,54,44,57
chr1	173153665	.	CT	C	24120.7	PASS	AC=1;AF=0.536;AN=2;DP=6497;MQ=60;set=variant3-variant5-variant8-variant11-variant14-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:201,203:404:99:6356,0,6244:91,110,100,103
chr1	173153841	.	TAC	T	1516.21	PASS	AC=1;AF=0.538;AN=2;DP=550;MQ=60;set=variant3-variant5-variant8-variant11-variant14-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:413,0,479:5,11,6,8
chr1	173154003	.	CTG	C	1879.13	PASS	AC=1;AF=0.5;AN=2;DP=703;MQ=60;set=variant8-variant13-variant14-variant28-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,58:130:99:2219,0,2880:43,29,32,26
chr1	173154237	.	A	G	1263.24	PASS	AC=1;AF=0.5;AN=2;DP=713;FractionInformativeReads=1;MQ=60;set=variant8-variant13-variant14-variant28-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,91:154:99:2189,0,1562:24,39,45,46
chr1	173154304	.	G	T	5150.08	PASS	AC=2;AF=0.591;AN=2;DP=2260;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:4152,343,0:0,0,51,63
chr1	173154354	.	A	C	6694.05	PASS	AC=1;AF=0.533;AN=2;DP=2067;MQ=60;set=variant3-variant5-variant8-variant11-variant14-variant15-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:79,69:148:99:1677,0,2190:44,35,41,28
chr1	173154539	.	T	C	9801.02	PASS	AC=1;AF=0.533;AN=2;DP=3759;MQ=60;set=variant3-variant5-variant8-variant11-variant14-variant15-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:112,126:238:99:3288,0,3083:58,54,66,60
chr1	173154734	.	T	C	2664.86	PASS	AC=1;AF=0.5;AN=2;DP=804;MQ=60;set=variant8-variant13-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:114,109:223:99:2900,0,3104:51,63,53,56
chr1	173155022	.	G	GA	2701.18	PASS	AC=1;AF=0.533;AN=2;DP=1089;MQ=60;set=variant3-variant5-variant8-variant11-variant14-variant15-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,35:71:99:855,0,860:12,24,12,23
chr1	173457017	.	C	T	1362.57	PASS	AC=1;AF=0.526;AN=2;DP=1965;set=variant2-variant5-variant6-variant8-variant11-variant14-variant16-variant17-variant20-variant21-variant23-variant26-variant27-variant29-variant33-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,46:104:99:1312,0,1771:38,20,32,14
chr1	173457599	.	A	G	3232.88	PASS	AC=1;AF=0.525;AN=2;DP=4760;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant11-variant14-variant16-variant17-variant20-variant21-variant23-variant26-variant27-variant29-variant33-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,88:180:99:2056,0,2368:44,48,37,51
chr1	173470105	.	A	G	1048.32	PASS	AC=1;AF=0.5;AN=2;DP=1479;MQ=60;set=variant5-variant6-variant8-variant11-variant14-variant16-variant17-variant20-variant21-variant23-variant26-variant27-variant29-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,30:69:99:918,0,1182:13,26,12,18
chr1	173472366	.	A	C	345.97	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=10.843;FractionInformativeReads=1;MQ=60;MQRankSum=1.11;QD=8.87;ReadPosRankSum=-1.278;SOR=0.077;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:374,0,579:16,3,11,9
chr1	173474482	.	A	G	1042.32	PASS	AC=1;AF=0.5;AN=2;DP=100;FS=1.648;FractionInformativeReads=0.99;MQ=60;MQRankSum=-1.074;QD=10.42;ReadPosRankSum=-0.799;SOR=0.488;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,44:99:99:1071,0,1460:23,32,21,23
chr1	173478648	.	T	C	75.73	PASS	AC=1;AF=0.583;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant24-variant29-variant30-variant31-variant33-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:27:86,0,27:1,0,3,1
chr1	173478877	.	G	T	178.9	PASS	AC=1;AF=0.5;AN=2;DP=38;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:271,0,307:2,8,5,7
chr1	173490407	.	TAA	TA,T	94.44	PASS	AC=0,1;AF=0.355,0.25;AN=2;DP=1031;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:19:76:3,1,9,6
chr1	173490616	.	CTATATA	C	144.5	PASS	AC=2;AF=0.81;AN=2;DP=228;FS=0;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant11-variant16-variant17-variant20-variant21-variant24-variant26-variant27-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:14:140,14,0:0,0,1,4
chr1	173493863	.	G	A	440.78	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.927;QD=18.37;ReadPosRankSum=-1.333;SOR=0.257;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:469,0,427:11,0,12,1
chr1	173495860	.	AAAATTAAGAAAAACATGTATTTCTTATTATTCATATAGTTTCTGTAAG	A	923.17	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=11.97;FractionInformativeReads=0.69;MQ=60;MQRankSum=0.275;QD=13;ReadPosRankSum=4.343;SOR=0.09;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,29:49:99:960,0,5843:3,17,12,17
chr1	173502587	.	T	A	135.21	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.198;QD=19.32;ReadPosRankSum=0.922;SOR=1.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:28:163,0,28:1,1,4,1
chr1	173503864	.	A	G	40.48	PASS	AC=1;AF=0.667;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant24-variant29-variant31-variant33-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:14:204,0,14:0,1,1,4
chr1	173505104	.	G	A	660.51	PASS	AC=1;AF=0.5;AN=2;DP=129;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:724,0,763:13,17,10,16
chr1	173516903	.	A	G	603.37	PASS	AC=1;AF=0.533;AN=2;DP=1358;MQ=60;set=variant2-variant3-variant6-variant7-variant24-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,43:90:99:1097,0,1159:16,31,17,26
chr1	173517540	.	G	A	1112.08	PASS	AC=1;AF=0.5;AN=2;DP=190;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1862,0,2561:22,17,21,25
chr1	173517547	.	G	A	1795.59	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=5.232;FractionInformativeReads=1;MQ=60;MQRankSum=-0.347;QD=19.95;ReadPosRankSum=-0.945;SOR=0.594;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,47:90:99:1824,0,2661:25,18,22,25
chr1	173523726	.	C	T	442.8	PASS	AC=1;AF=0.5;AN=2;DP=66;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:460,0,591:14,4,12,3
chr1	173552783	.	G	A	536.63	PASS	AC=1;AF=0.568;AN=2;DP=850;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant13-variant17-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,27:40:99:717,0,292:4,9,11,16
chr1	173556699	.	G	T	665.28	PASS	AC=2;AF=0.955;AN=2;DP=543;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:342,30,0:0,0,8,2
chr1	173556870	.	G	A	774.38	PASS	AC=1;AF=0.5;AN=2;DP=92;FS=1.778;FractionInformativeReads=1;MQ=60;MQRankSum=0.171;QD=8.42;ReadPosRankSum=-1.726;SOR=0.803;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,33:92:99:803,0,1416:31,28,15,18
chr1	173557018	.	C	T	184.66	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=2.865;FractionInformativeReads=1;MQ=60;MQRankSum=0.658;QD=9.72;ReadPosRankSum=1.973;SOR=2.012;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:213,0,400:3,10,0,6
chr1	173579034	.	C	T	2110.29	PASS	AC=1;AF=0.5;AN=2;DP=687;MQ=60;set=variant10-variant13-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,57:130:99:1441,0,1823:32,41,24,33
chr1	173596257	.	A	T	1844.29	PASS	AC=1;AF=0.5;AN=2;DP=433;MQ=60;set=variant10-variant13-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,39:87:99:1486,0,2548:28,20,21,18
chr1	173596273	.	A	G	1796.96	PASS	AC=1;AF=0.5;AN=2;DP=464;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,39:93:99:1453,0,2699:31,23,21,18
chr1	173596432	.	C	T	176.86	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.853;QD=8.04;ReadPosRankSum=0.102;SOR=0.754;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:205,0,353:4,10,2,6
chr1	173606179	.	A	T	166.16	PASS	AC=1;AF=0.5;AN=2;DP=501;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant27-variant29-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:315,0,452:4,12,1,9
chr1	173606207	.	T	A	197.13	PASS	AC=1;AF=0.595;AN=2;DP=294;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant11-variant14-variant16-variant17-variant22-variant23-variant26-variant27-variant29-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:186,0,323:0,8,0,5
chr1	173626764	.	CT	CTTTTTTTTT,CTTTTTTT,CTTTTTTTT,CTTTT,CTTTTTTTTTT,CTTTTTTTTTTTT,C	33.69	PASS	AC=0,0,0,0,0,0,1;AF=0.095,0.286,0.167,0.048,0.048,0.048,0.095;AN=2;DP=264;FS=0;set=variant-variant3-variant4-variant6-variant10-variant12-variant15-variant20-variant21-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant35-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/7:7:69:0,2,0,5
chr1	173626787	.	C	A	133.71	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:66:226,0,66:0,2,0,6
chr1	173638537	.	CA	C	170.69	PASS	AC=1;AF=0.5;AN=2;DP=530;MQ=60;set=variant3-variant4-filterInvariant5-variant7-variant8-variant13-variant14-filterInvariant22-filterInvariant25-variant27-variant30-variant31-variant32-filterInvariant33-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:83:175,0,83:2,3,5,4
chr1	173683954	.	C	T	47.78	PASS	AC=2;AF=0.804;AN=2;DP=164;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant29-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:263,21,0:0,0,6,1
chr1	173702764	.	C	T	506.38	PASS	AC=1;AF=0.625;AN=2;DP=688;MQ=60;set=variant2-variant3-variant6-variant8-variant11-variant14-variant16-variant17-variant22-variant23-variant26-variant27-variant29-variant32-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,24:37:99:718,0,301:8,5,18,6
chr1	173722545	.	A	G	343.99	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.489;QD=13.23;ReadPosRankSum=-0.129;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:372,0,351:3,9,3,11
chr1	173724942	.	A	G	310.19	PASS	AC=1;AF=0.632;AN=2;DP=297;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant11-variant14-variant16-variant17-variant22-variant23-variant27-variant29-variant32-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:99:310,0,104:2,1,8,0
chr1	173725101	.	G	A	1643.41	PASS	AC=1;AF=0.5;AN=2;DP=128;FS=1.42;FractionInformativeReads=1;MQ=60;MQRankSum=-1.011;QD=12.84;ReadPosRankSum=-0.929;SOR=0.864;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,74:128:99:1672,0,1282:27,27,40,34
chr1	173735378	.	T	C	1774.61	PASS	AC=1;AF=0.5;AN=2;DP=149;FS=1.301;FractionInformativeReads=1;MQ=60;MQRankSum=1.525;QD=11.91;ReadPosRankSum=-0.006;SOR=0.821;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,76:149:99:1803,0,1676:31,42,30,46
chr1	173735434	.	C	T	857.65	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=2.069;FractionInformativeReads=1;MQ=60;MQRankSum=0.797;QD=10.21;ReadPosRankSum=1.062;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,34:84:99:886,0,1327:15,35,8,26
chr1	173754505	.	A	G	2942.59	PASS	AC=1;AF=0.5;AN=2;DP=258;FS=2.734;FractionInformativeReads=1;MQ=60;MQRankSum=2.319;QD=11.41;ReadPosRankSum=-0.249;SOR=0.69;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:137,121:258:99:2971,0,3630:65,72,63,58
chr1	173755125	.	G	A	1479.52	PASS	AC=1;AF=0.5;AN=2;DP=150;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.18;QD=9.86;ReadPosRankSum=-2.768;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:86,64:150:99:1508,0,2048:43,43,32,32
chr1	173768985	.	G	A	382.97	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=1.657;FractionInformativeReads=1;MQ=60;MQRankSum=0.467;QD=14.73;ReadPosRankSum=-1.972;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:411,0,253:4,7,4,11
chr1	173769670	.	AAAG	A	641.23	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=0.902;MQ=60;MQRankSum=0.41;QD=15.64;ReadPosRankSum=1.261;SOR=0.61;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:678,0,865:8,11,8,10
chr1	173772506	.	T	G	1369.23	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=0.714;FractionInformativeReads=1;MQ=60;MQRankSum=-0.559;QD=12.45;ReadPosRankSum=3.949;SOR=0.839;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,56:110:99:1397,0,1355:28,26,31,25
chr1	173780486	.	AG	A	681.97	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=3.151;FractionInformativeReads=0.976;MQ=60;MQRankSum=0.3;QD=16.24;ReadPosRankSum=0.404;SOR=1.341;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:719,0,681:6,14,4,17
chr1	173793106	.	C	T	442.07	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.784;QD=21.05;ReadPosRankSum=-1.197;SOR=0.733;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,16:21:99:470,0,105:4,1,12,4
chr1	173794587	.	CATTATTATTATT	CATTATT,CATTATTATTATTATT,CATT,CATTATTATTATTATTATT,C	164.66	PASS	AC=0,0,0,0,2;AF=0.188,0.063,0.375,0.125,0.125;AN=2;DP=80;FS=0;MQ=60;set=variant7-variant16-variant21-variant25-variant27-variant32-variant36-variant41	GT:DP:GQ:SB	5/5:2:8:0,0,1,1
chr1	173797447	.	CT	C,CTT	1361.03	PASS	AC=1,1;AF=0.5,0.25;AN=2;DP=332;MQ=60;set=variant3-variant41	GT:DP:GQ:SB	1/2:91:99:4,0,40,47
chr1	173797459	.	C	G	1535.47	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=1.559;FractionInformativeReads=1;MQ=60;MQRankSum=1.385;QD=14.35;ReadPosRankSum=3.745;SOR=0.625;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,45:107:99:1564,0,2316:29,33,23,22
chr1	173802433	.	GA	G	66.14	PASS	AC=1;AF=0.75;AN=2;DP=54;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant16-variant17-variant22-variant23-variant26-variant27-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:171,0,165:4,2,5,1
chr1	173807552	.	CT	C	59.25	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.72;QD=9.88;ReadPosRankSum=0.72;SOR=1.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:39:97,0,39:0,2,0,4
chr1	173810239	.	A	G	272.63	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.449;QD=14.35;ReadPosRankSum=1.102;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:301,0,336:1,9,1,8
chr1	173814224	.	C	T	151.18	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=2.632;FractionInformativeReads=1;MQ=60;MQRankSum=-0.278;QD=13.74;ReadPosRankSum=-0.278;SOR=0.595;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:179,0,108:3,1,3,4
chr1	173819743	.	CT	CTT,C	35.45	PASS	AC=1,0;AF=0.417,0.139;AN=2;DP=382;set=variant2-filterInvariant3-variant4-variant6-filterInvariant7-variant8-variant14-variant16-filterInvariant20-filterInvariant21-variant22-variant26-variant27-variant31-variant32-variant33-variant40-filterInvariant41	GT:DP:GQ:SB	0/1:18:87:3,9,2,4
chr1	173825692	.	T	G	280.43	PASS	AC=2;AF=0.688;AN=2;DP=158;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant14-variant16-variant22-variant23-variant26-variant29-variant32-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:324,24,0:0,0,8,0
chr1	173827053	.	T	C	3638.24	PASS	AC=1;AF=0.5;AN=2;DP=293;FS=0.888;FractionInformativeReads=1;MQ=60;MQRankSum=2.082;QD=12.42;ReadPosRankSum=1.516;SOR=0.762;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:146,147:293:99:3666,0,3630:77,69,80,67
chr1	173834356	.	A	G	452.89	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=0.964;MQ=60;MQRankSum=1.258;QD=16.17;ReadPosRankSum=1.85;SOR=0.582;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:481,0,313:8,3,11,5
chr1	173835211	.	C	T	568.74	PASS	AC=1;AF=0.632;AN=2;DP=790;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant14-variant16-variant17-variant22-variant23-variant26-variant27-variant29-variant32-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:534,0,652:5,17,9,9
chr1	173835501	.	T	C	1026.61	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=7.245;FractionInformativeReads=1;MQ=60;MQRankSum=0.784;QD=11.94;ReadPosRankSum=0.939;SOR=0.259;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,46:86:99:1055,0,1039:13,27,22,24
chr1	173835758	.	C	A	1122.51	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.013;QD=13.21;ReadPosRankSum=-0.924;SOR=0.716;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,47:85:99:1151,0,888:20,18,25,22
chr1	173835919	.	T	A	1478.1	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=0.745;FractionInformativeReads=1;MQ=60;MQRankSum=-0.624;QD=14.49;ReadPosRankSum=2.068;SOR=0.825;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,55:102:99:1506,0,1274:25,22,31,24
chr1	173836194	.	G	A	767.76	PASS	AC=1;AF=0.545;AN=2;DP=677;MQ=60;set=variant2-variant3-variant14-variant16-variant22-variant23-variant27-variant32-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,31:61:99:731,0,830:12,18,13,18
chr1	173836247	.	T	TA	362.41	PASS	AC=1;AF=0.632;AN=2;DP=668;MQ=60;set=variant2-variant3-variant6-variant8-variant14-variant16-variant17-variant22-variant23-variant26-variant27-variant29-variant32-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:341,0,555:8,15,3,12
chr1	173836602	.	G	A	353.3	PASS	AC=2;AF=0.658;AN=2;DP=278;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant14-variant16-variant17-variant22-variant23-variant26-variant27-variant29-variant32-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:235,18,0:0,0,6,0
chr1	173837306	.	T	C	1816.6	PASS	AC=1;AF=0.632;AN=2;DP=2643;MQ=60;set=variant2-variant3-variant6-variant8-variant14-variant16-variant17-variant22-variant23-variant26-variant27-variant29-variant32-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,79:134:99:1959,0,1451:20,35,40,39
chr1	173839240	.	C	T	106.7	PASS	AC=2;AF=0.667;AN=2;DP=222;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant14-variant16-variant22-variant23-variant26-variant27-variant29-variant32-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:541,45,0:0,0,12,3
chr1	173839435	.	G	A	1704.44	PASS	AC=1;AF=0.5;AN=2;DP=142;FS=0;FractionInformativeReads=0.993;MQ=60;MQRankSum=1.161;QD=12;ReadPosRankSum=0.513;SOR=0.726;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,70:141:99:1733,0,1714:41,30,41,29
chr1	173842467	.	A	G	718.91	PASS	AC=2;AF=0.804;AN=2;DP=325;MQ=60;set=variant2-variant3-variant6-variant8-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:622,51,0:0,0,14,3
chr1	173854659	.	C	T	169.82	PASS	AC=1;AF=0.5;AN=2;DP=171;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant14-variant16-variant17-variant22-variant23-variant26-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:234,0,181:5,0,6,0
chr1	173855298	.	A	T	1164.62	PASS	AC=2;AF=0.804;AN=2;DP=1433;MQ=60;set=variant2-variant3-variant6-variant8-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2011,185,0:0,0,28,34
chr1	173878832	.	T	C	5845.9	PASS	AC=2;AF=0.783;AN=2;DP=4816;MQ=60;set=variant2-variant3-variant6-variant8-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:5847,552,0:0,0,97,87
chr1	173878862	.	T	C	6368.63	PASS	AC=2;AF=0.783;AN=2;DP=4865;MQ=60;set=variant2-variant3-variant6-variant8-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,203:203:99:6070,608,0:0,0,102,101
chr1	173900706	.	CCTA	C	3673.48	PASS	AC=1;AF=0.5;AN=2;DP=2783;MQ=60;set=variant6-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,98:175:99:3809,0,3453:39,38,49,49
chr1	173901520	.	C	T	884.87	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=0.84;FractionInformativeReads=1;MQ=60;MQRankSum=1.554;QD=10.29;ReadPosRankSum=-1.493;SOR=0.553;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,36:86:99:913,0,1313:31,19,21,15
chr1	173903300	.	G	A	4713.76	PASS	AC=1;AF=0.5;AN=2;DP=4747;MQ=60;set=variant6-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:154,145:299:99:3559,0,3956:69,85,70,75
chr1	173903737	.	G	A	3858.42	PASS	AC=1;AF=0.5;AN=2;DP=4399;MQ=60;set=variant6-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:149,150:299:99:3603,0,3854:64,85,61,89
chr1	173904809	.	T	C	4237.64	PASS	AC=1;AF=0.5;AN=2;DP=4068;MQ=60;set=variant6-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,148:308:99:3615,0,3885:88,72,85,63
chr1	173904959	.	A	G	3852.82	PASS	AC=1;AF=0.5;AN=2;DP=4117;MQ=60;set=variant6-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,155:289:99:3965,0,3498:66,68,69,86
chr1	173905237	.	A	G	4281.68	PASS	AC=1;AF=0.5;AN=2;DP=4530;MQ=60;set=variant6-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,163:315:99:3875,0,3663:72,80,80,83
chr1	173906530	.	GA	G	3456.21	PASS	AC=1;AF=0.5;AN=2;DP=3485;MQ=60;set=variant6-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,122:239:99:3084,0,2922:68,49,75,47
chr1	173907812	.	C	T	1961.03	PASS	AC=1;AF=0.5;AN=2;DP=1570;MQ=60;set=variant6-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,53:110:99:1346,0,1627:29,28,26,27
chr1	173921301	.	CA	C,CAA	37.21	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=44;FS=0;MQ=60;set=filterInvariant24-variant41	GT:DP:GQ:SB	0/2:10:68:2,3,2,3
chr1	173947532	.	G	A	455.24	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.863;QD=8.13;ReadPosRankSum=2.539;SOR=0.709;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,21:56:99:483,0,877:23,12,14,7
chr1	173950205	.	T	C	291.87	PASS	AC=1;AF=0.5;AN=2;DP=116;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant13-variant14-variant16-variant17-variant22-variant26-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:111,0,159:2,3,0,3
chr1	173952539	.	T	A	921.72	PASS	AC=1;AF=0.611;AN=2;DP=1269;MQ=60;set=variant2-variant6-variant8-variant10-variant13-variant14-variant16-variant17-variant22-variant23-variant26-variant29-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,38:72:99:857,0,776:23,11,22,16
chr1	173961992	.	T	C	1615.27	PASS	AC=1;AF=0.5;AN=2;DP=129;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.507;QD=12.52;ReadPosRankSum=-2.885;SOR=0.636;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,61:129:99:1644,0,1621:40,28,35,26
chr1	174188231	.	GT	G	519.69	PASS	AC=1;AF=0.5;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:557,0,323:9,7,17,7
chr1	174188285	.	G	A	819.78	PASS	AC=2;AF=0.618;AN=2;DP=1160;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant13-variant14-variant16-variant19-variant22-variant23-variant27-variant29-variant32-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1659,165,0:0,0,30,25
chr1	174221887	.	GT	G	128.96	PASS	AC=2;AF=0.76;AN=2;DP=439;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant10-variant13-variant14-variant16-variant17-variant19-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:571,48,0:0,0,1,15
chr1	174274062	.	A	G	306.55	PASS	AC=2;AF=0.633;AN=2;DP=449;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant13-variant14-variant16-variant19-variant22-variant23-variant27-variant32-variant33-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1595,144,0:0,0,35,13
chr1	174274349	.	T	G	390.96	PASS	AC=2;AF=0.633;AN=2;DP=914;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant13-variant14-variant16-variant19-variant22-variant23-variant27-variant32-variant33-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1615,147,0:0,0,14,35
chr1	174417231	.	G	A	3238.26	PASS	AC=2;AF=0.955;AN=2;DP=6175;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3650,348,0:0,0,71,45
chr1	174516999	.	C	T	742.66	PASS	AC=1;AF=0.6;AN=2;DP=685;MQ=60;set=variant-variant2-variant3-variant13-variant14-variant16-variant19-variant22-variant23-variant27-variant32-variant33-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,29:55:99:750,0,719:18,8,20,9
chr1	174517259	.	G	A	1459.44	PASS	AC=1;AF=0.5;AN=2;DP=665;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,72:125:99:2048,0,1348:24,29,39,33
chr1	174769068	.	GCACACACACACACACACACACACA	G,GCACACACACA,GCACACACACACA,GCA,GCACA,GCACACACACACACACACA,GCACACACA,GCACACACACACACA,GCACACA,GCACACACACACACACACACACACACA,GCACACACACACACACACACA	666.74	PASS	AC=0,0,1,0,0,0,0,0,0,0,0;AF=0.174,0.035,0.093,0.465,0.093,0.012,0.023,0.012,0.012,0.012,0.012;AN=2;DP=1052;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:26:99:10,6,8,2
chr1	174769082	.	A	G	269.66	PASS	AC=1;AF=0.5;AN=2;DP=186;set=variant2-variant3-variant16-variant22-variant27-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,7:26:99:114,0,1614:13,6,5,2
chr1	174843716	.	CTTTTTTTTTTTTTT	CTTTTTTTT,CTTTTTTTTTTTT,CTTTTT,CTTTTTTTTT,CTTTTTTTTTTT,CTTTTTTTTTT,CTTTTTTTTTTTTT,CT,C	143.61	PASS	AC=0,1,0,0,0,0,0,0,0;AF=0.014,0.216,0.014,0.027,0.189,0.054,0.135,0.014,0.027;AN=2;DP=1269;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-filterInvariant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:14:62:1,3,4,6
chr1	174926860	.	CTTTT	CTT,CTTT,CT,C	109.3	PASS	AC=1,0,0,0;AF=0.259,0.241,0.052,0.017;AN=2;DP=1103;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-variant9-filterInvariant10-variant12-variant13-variant15-variant17-variant18-variant22-variant24-variant27-variant28-variant29-variant32-variant33-variant34-filterInvariant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:21:99:8,5,6,2
chr1	174927388	.	G	C	1484.84	PASS	AC=2;AF=0.955;AN=2;DP=1576;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1430,117,0:0,0,7,32
chr1	174952226	.	T	C	169.37	PASS	AC=1;AF=0.5;AN=2;DP=47;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:111,0,34:0,1,0,3
chr1	174959278	.	G	A	1741.52	PASS	AC=1;AF=0.5;AN=2;DP=348;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:87,93:180:99:2325,0,2212:49,38,49,44
chr1	174959347	.	C	CA	4452.76	PASS	AC=1;AF=0.5;AN=2;DP=1006;MQ=60;set=variant10-variant13-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:125,120:245:99:4102,0,4312:54,71,52,68
chr1	174959973	.	G	A	789.15	PASS	AC=1;AF=0.5;AN=2;DP=172;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:510,0,832:17,8,14,5
chr1	174960461	.	C	T	2583.75	PASS	AC=1;AF=0.588;AN=2;DP=3108;MQ=60;set=variant-variant2-variant3-variant7-variant13-variant14-variant16-variant19-variant23-variant27-variant32-variant33-variant34-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:83,91:174:99:2296,0,2050:47,36,52,39
chr1	174960911	.	ATTTT	AT,ATT,A,ATTTTT,ATTT	7514.61	PASS	AC=2,0,0,0,0;AF=0.524,0.202,0.036,0.012,0.012;AN=2;DP=14350;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:265:99:38,5,100,122
chr1	174961674	.	AT	A	108.41	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=351;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:121,24:145:99:164,0,2534:58,63,13,11
chr1	174961987	.	C	T	8789.82	PASS	AC=2;AF=0.838;AN=2;DP=11035;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,240:240:99:7548,718,0:0,0,124,116
chr1	174962558	.	TAATA	T	3758.39	PASS	AC=1;AF=0.5;AN=2;DP=610;MQ=60;set=variant10-variant13-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:72,62:134:99:2330,0,4529:30,42,22,40
chr1	174963406	.	GAGAA	G	3658.14	PASS	AC=1;AF=0.5;AN=2;DP=595;MQ=60;set=variant10-variant13-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:66,76:142:99:2959,0,3945:38,28,43,33
chr1	174968530	.	T	TC	1577.5	PASS	AC=2;AF=1;AN=2;DP=2252;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1668,135,0:0,0,23,22
chr1	174969271	.	C	T	4788.55	PASS	AC=2;AF=0.825;AN=2;DP=6764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5044,494,0:0,0,86,79
chr1	174976111	.	G	A	654.8	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=1.178;FractionInformativeReads=1;MQ=60;MQRankSum=0.51;QD=13.36;ReadPosRankSum=0.09;SOR=0.49;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:683,0,811:7,18,8,16
chr1	174979726	.	C	A	1684.17	PASS	AC=1;AF=0.5;AN=2;DP=553;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,72:132:99:2175,0,1695:33,27,39,33
chr1	174980242	.	TAAAAAAAA	T,TAAAAAAAAA,TAAAAAAA,TAAAAAA	1307.53	PASS	AC=1,0,0,0;AF=0.25,0.075,0.2,0.038;AN=2;DP=3102;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-filterInvariant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:72:99:28,10,21,13
chr1	174980323	.	T	C	3812.68	PASS	AC=1;AF=0.588;AN=2;DP=4711;MQ=60;set=variant-variant2-variant3-variant7-variant13-variant14-variant16-variant19-variant23-variant27-variant32-variant33-variant34-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:133,113:246:99:3096,0,3325:84,49,72,41
chr1	174980511	.	A	C	4593.32	PASS	AC=1;AF=0.5;AN=2;DP=1227;MQ=60;set=variant10-variant13-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:140,179:319:99:4675,0,3836:55,85,80,99
chr1	174982790	.	T	C	513.94	PASS	AC=1;AF=0.5;AN=2;DP=175;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,26:43:99:715,0,470:8,9,16,10
chr1	174983363	.	T	G	1711.31	PASS	AC=1;AF=0.5;AN=2;DP=119;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.444;QD=14.38;ReadPosRankSum=-1.13;SOR=0.672;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,62:119:99:1740,0,1487:19,38,21,41
chr1	174983633	.	T	C	2823.96	PASS	AC=1;AF=0.588;AN=2;DP=5031;MQ=60;set=variant-variant2-variant3-variant7-variant13-variant14-variant16-variant19-variant23-variant27-variant32-variant33-variant34-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:145,136:281:99:3132,0,3456:77,68,68,68
chr1	174983696	.	C	T	2810	PASS	AC=1;AF=0.5;AN=2;DP=218;FS=0.505;FractionInformativeReads=1;MQ=60;MQRankSum=-1.974;QD=12.89;ReadPosRankSum=1.299;SOR=0.621;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:109,109:218:99:2838,0,2843:43,66,45,64
chr1	174984074	.	C	T	188.59	PASS	AC=1;AF=0.5;AN=2;DP=281;set=variant2-variant27-variant32-variant33-variant34-variant36-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:150,0,126:0,7,1,8
chr1	175046488	.	G	A	1249.92	PASS	AC=1;AF=0.662;AN=2;DP=3046;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,40:95:99:1033,0,1477:36,19,30,10
chr1	175046789	.	A	G	963.8	PASS	AC=1;AF=0.662;AN=2;DP=4343;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,64:120:99:1665,0,1438:26,30,30,34
chr1	175052828	.	G	A	754.52	PASS	AC=1;AF=0.545;AN=2;DP=1698;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant22-variant26-variant30-variant33-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,40:64:99:1065,0,646:16,8,27,13
chr1	175053101	.	A	T	1011.62	PASS	AC=1;AF=0.662;AN=2;DP=4791;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,74:149:99:1869,0,1799:28,47,26,48
chr1	175054548	.	C	T	923.66	PASS	AC=1;AF=0.662;AN=2;DP=2344;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,38:74:99:878,0,928:25,11,23,15
chr1	175086461	.	A	G	334.65	PASS	AC=1;AF=0.691;AN=2;DP=1129;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,21:35:99:735,0,476:1,13,2,19
chr1	175087677	.	G	A	2508	PASS	AC=1;AF=0.643;AN=2;DP=7444;set=variant-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant26-variant28-variant29-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,102:207:99:2476,0,2755:62,43,57,45
chr1	175087729	.	T	C	2734.54	PASS	AC=1;AF=0.643;AN=2;DP=9164;set=variant-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant26-variant28-variant29-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:150,135:285:99:3390,0,3791:78,72,70,65
chr1	175087815	.	C	T	2930.82	PASS	AC=1;AF=0.5;AN=2;DP=539;FractionInformativeReads=1;MQ=60;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:148,135:283:99:3422,0,3956:75,73,75,60
chr1	175092992	.	GGAGT	G	367.87	PASS	AC=2;AF=0.881;AN=2;DP=755;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:745,51,0:0,0,4,13
chr1	175096333	.	A	G	740.44	PASS	AC=2;AF=0.652;AN=2;DP=1770;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1653,129,0:0,0,6,37
chr1	175097331	.	G	A	760.92	PASS	AC=1;AF=0.712;AN=2;DP=3649;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,45:110:99:1089,0,1587:31,34,23,22
chr1	175097349	.	C	T	2585.37	PASS	AC=1;AF=0.763;AN=2;DP=4371;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,67:111:99:1510,0,1594:22,22,33,34
chr1	175097357	.	C	G	1303.49	PASS	AC=1;AF=0.533;AN=2;DP=1584;MQ=60;set=variant6-variant7-variant20-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,43:109:99:988,0,2583:34,32,21,22
chr1	175097864	.	G	A	840.48	PASS	AC=1;AF=0.533;AN=2;DP=1027;MQ=60;set=variant6-variant7-variant20-variant24-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,43:79:99:1124,0,819:17,19,18,25
chr1	175097991	.	C	T	422.96	PASS	AC=1;AF=0.735;AN=2;DP=937;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:555,0,547:8,14,5,14
chr1	175104790	.	T	C	276.08	PASS	AC=1;AF=0.568;AN=2;DP=493;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant23-variant26-variant27-variant29-variant31-variant32-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:371,0,306:9,1,10,0
chr1	175104796	.	G	T	934.74	PASS	AC=2;AF=0.884;AN=2;DP=1241;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:872,63,0:0,0,20,1
chr1	175105778	.	T	C	119.1	PASS	AC=1;AF=0.5;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant10-variant13-variant20-variant24-variant28-variant30-variant33-variant34-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,6:23:99:149,0,485:11,6,5,1
chr1	175105880	.	G	A	2346.78	PASS	AC=1;AF=0.784;AN=2;DP=2690;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:747,0,764:18,10,20,10
chr1	175105942	.	G	A	3167.14	PASS	AC=2;AF=0.966;AN=2;DP=3627;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2426,224,0:0,0,46,29
chr1	175105996	.	C	T	853.19	PASS	AC=1;AF=0.5;AN=2;DP=515;FractionInformativeReads=1;MQ=60;set=variant7-variant30-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,46:92:99:1134,0,1123:21,25,23,23
chr1	175106186	.	T	C	148.44	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=2.808;FractionInformativeReads=1;MQ=60;MQRankSum=-0.551;QD=9.9;ReadPosRankSum=1.531;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:177,0,314:2,8,0,5
chr1	175113578	.	T	C	2324.08	PASS	AC=2;AF=0.966;AN=2;DP=4569;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2957,275,0:0,0,58,34
chr1	175116046	.	CT	CTT,C	578.64	PASS	AC=1,0;AF=0.489,0.011;AN=2;DP=3223;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:65:99:21,24,12,8
chr1	175116252	.	C	G	1678.13	PASS	AC=2;AF=0.864;AN=2;DP=3562;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2113,204,0:0,0,32,36
chr1	175116283	.	C	G	813.4	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.651;QD=12.51;ReadPosRankSum=-1.27;SOR=0.786;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,30:65:99:842,0,951:16,19,13,17
chr1	175116536	.	G	C	357.22	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.256;QD=10.21;ReadPosRankSum=-0.939;SOR=0.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:385,0,603:9,13,5,8
chr1	175126313	.	A	G	1367.25	PASS	AC=1;AF=0.5;AN=2;DP=104;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.823;QD=13.15;ReadPosRankSum=-2.025;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1395,0,1668:18,37,16,33
chr1	175126644	.	G	A	4210.13	PASS	AC=2;AF=0.86;AN=2;DP=5376;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3443,345,0:0,0,56,59
chr1	175126845	.	T	C	3503.55	PASS	AC=1;AF=0.5;AN=2;DP=2427;MQ=60;set=variant3-variant11-variant13-variant14-variant18-variant20-variant24-variant25-variant27-variant33-variant35-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,78:154:99:2000,0,1780:33,43,36,42
chr1	175126956	.	C	G	779.15	PASS	AC=2;AF=0.583;AN=2;DP=454;FractionInformativeReads=1;MQ=60;set=variant6-variant20-variant22-variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2443,215,0:0,0,27,45
chr1	175127748	.	T	C	603.83	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=1.26;FractionInformativeReads=0.952;MQ=60;MQRankSum=0.29;QD=14.38;ReadPosRankSum=0.649;SOR=1.051;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:632,0,408:8,8,10,14
chr1	175128711	.	C	A	1555.21	PASS	AC=2;AF=0.635;AN=2;DP=2086;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1550,141,0:0,0,25,22
chr1	175128913	.	T	C	515.64	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=1.035;FractionInformativeReads=1;MQ=60;MQRankSum=0.22;QD=9.92;ReadPosRankSum=-0.476;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:544,0,688:13,14,11,14
chr1	175129946	.	C	T	998.38	PASS	AC=2;AF=0.603;AN=2;DP=1621;set=variant-variant3-variant5-variant6-variant8-variant10-variant11-variant13-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:8,54:62:99:1741,144,0:1,7,32,22
chr1	175130119	.	T	C	1425.54	PASS	AC=1;AF=0.5;AN=2;DP=97;FS=3.846;FractionInformativeReads=1;MQ=60;MQRankSum=-2.066;QD=14.7;ReadPosRankSum=1.463;SOR=0.399;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,54:97:99:1454,0,1147:16,27,25,29
chr1	175130276	.	G	A	1611.25	PASS	AC=2;AF=0.966;AN=2;DP=2500;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1444,141,0:0,0,20,27
chr1	175162074	.	G	A	501.12	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.29;QD=7.48;ReadPosRankSum=-1.862;SOR=0.68;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,28:67:99:529,0,886:21,18,15,13
chr1	175291958	.	GAGGA	GAGGAAGGA,G	395.5	PASS	AC=1,0;AF=0.5,0.042;AN=2;DP=209;MQ=60;set=variant2-variant7-variant8-variant16-variant17-variant22-variant26-variant28-variant33-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:14:99:6,2,3,3
chr1	175293424	.	T	C	1134.39	PASS	AC=2;AF=0.833;AN=2;DP=842;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:916,75,0:0,0,20,5
chr1	175299301	.	T	C	992.52	PASS	AC=2;AF=0.842;AN=2;DP=3256;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2132,198,0:0,0,37,29
chr1	175304971	.	C	G	282.98	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=2.688;FractionInformativeReads=1;MQ=60;MQRankSum=-1.109;QD=20.21;ReadPosRankSum=-0.193;SOR=1.911;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:311,0,186:2,4,1,7
chr1	175324518	.	GCA	G	3253.26	PASS	AC=1;AF=0.78;AN=2;DP=2994;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,31:74:99:1165,0,3023:28,15,22,9
chr1	175324521	.	A	T	3262.3	PASS	AC=1;AF=0.78;AN=2;DP=3030;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,31:74:99:1165,0,3023:28,15,22,9
chr1	175329083	.	A	C,T	336.22	PASS	AC=2,0;AF=0.426,0.368;AN=2;DP=294;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:7:21:0,0,3,4
chr1	175335412	.	A	C	1176.61	PASS	AC=2;AF=0.805;AN=2;DP=1397;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1459,120,0:0,0,8,32
chr1	175336185	.	G	C	78.14	PASS	AC=1;AF=0.563;AN=2;DP=131;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant16-variant17-variant22-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:301,0,271:7,3,9,0
chr1	175336530	.	T	C	1364.14	PASS	AC=1;AF=0.724;AN=2;DP=2903;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:796,0,755:10,18,13,20
chr1	175336619	.	T	C	661.62	PASS	AC=1;AF=0.711;AN=2;DP=1578;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:484,0,454:7,9,8,10
chr1	175348543	.	T	C	648.67	PASS	AC=1;AF=0.775;AN=2;DP=1787;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:590,0,651:17,8,15,10
chr1	175348723	.	C	T	1050.17	PASS	AC=1;AF=0.775;AN=2;DP=4651;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,54:110:99:1414,0,1425:28,28,28,26
chr1	175355128	.	C	G	168.92	PASS	AC=1;AF=0.711;AN=2;DP=1704;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:492,0,589:15,10,14,6
chr1	175355391	.	A	G	713.78	PASS	AC=2;AF=0.893;AN=2;DP=3075;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,63:64:99:2019,146,0:1,0,33,30
chr1	175355618	.	T	C	615.88	PASS	AC=1;AF=0.769;AN=2;DP=1127;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:644,0,470:5,13,6,15
chr1	175360652	.	T	C	1193.09	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=0.71;FractionInformativeReads=1;MQ=60;MQRankSum=-0.201;QD=10.65;ReadPosRankSum=-0.417;SOR=0.596;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,52:112:99:1221,0,1479:25,35,23,29
chr1	175360690	.	C	T	997.02	PASS	AC=1;AF=0.75;AN=2;DP=3070;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,43:73:99:1003,0,859:11,19,20,23
chr1	175362736	.	G	A	358.52	PASS	AC=1;AF=0.763;AN=2;DP=780;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:99:403,0,157:5,0,9,4
chr1	175365663	.	G	A	943.7	PASS	AC=1;AF=0.696;AN=2;DP=3362;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant27-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,75:142:99:2000,0,1526:34,33,41,34
chr1	175375334	.	C	T	68.16	PASS	AC=2;AF=0.64;AN=2;DP=811;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant16-variant17-variant21-variant22-variant23-variant25-variant27-variant31-variant32-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,39:40:74:1310,74,0:1,0,27,12
chr1	175375683	.	T	C	2035.15	PASS	AC=2;AF=0.776;AN=2;DP=8418;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:6280,571,0:0,0,110,81
chr1	175375802	.	T	C	2680.88	PASS	AC=2;AF=0.776;AN=2;DP=9191;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,258:258:99:8283,774,0:0,0,116,142
chr1	175376019	.	AG	A,AGG	85.03	PASS	AC=2,0;AF=0.756,0.026;AN=2;DP=1531;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:41:99:0,0,7,34
chr1	175712765	.	GTCTCTCTCTCTCTCTCTCTCTCTC	GTCTCTCTCTCTCTCTCTC,GTCTCTCTCTCTC,GTCTCTCTCTCTCTCTCTCTCTCTCTC,GTCTCTCTCTCTCTC,GTCTCTCTC,GTCTC,GTCTCTCTCTCTCTCTCTCTCTC,GTCTCTCTCTC,GTCTCTCTCTCTCTCTC,GTCTCTCTCTCTCTCTCTCTC,GTCTCTCTCTCTCTCTCTCTCTCTCTCTC,G	584.99	PASS	AC=1,0,0,0,0,0,0,0,0,0,0,0;AF=0.159,0.146,0.024,0.073,0.012,0.061,0.073,0.024,0.134,0.098,0.049,0.012;AN=2;DP=1139;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:10:11:1,2,4,3
chr1	175712921	.	G	T	451.13	PASS	AC=1;AF=0.5;AN=2;DP=94;FractionInformativeReads=1;MQ=60;set=variant10-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:469,0,498:11,10,8,12
chr1	175916267	.	T	C	4402.9	PASS	AC=2;AF=0.977;AN=2;DP=5536;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3495,332,0:0,0,57,54
chr1	175937540	.	C	T	3672.47	PASS	AC=2;AF=0.977;AN=2;DP=5430;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3763,368,0:0,0,66,57
chr1	175951347	.	T	A	2714.67	PASS	AC=2;AF=0.977;AN=2;DP=3543;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2222,219,0:0,0,38,35
chr1	176012807	.	G	A	1171.01	PASS	AC=2;AF=0.977;AN=2;DP=1001;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:543,48,0:0,0,12,4
chr1	176050430	.	GA	G,GAA	40.31	PASS	AC=1,0;AF=0.424,0.076;AN=2;DP=2093;set=filterInvariant-filterInvariant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant12-variant14-variant15-variant17-filterInvariant21-variant22-variant23-variant26-variant27-variant29-variant30-filterInvariant31-variant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:51:99:11,19,10,11
chr1	176102974	.	T	C	1106.41	PASS	AC=1;AF=0.5;AN=2;DP=1653;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant12-variant16-variant19-variant20-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:584,0,858:15,16,13,9
chr1	176103053	.	TAC	T	677.16	PASS	AC=1;AF=0.625;AN=2;DP=1830;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,26:41:99:1032,0,533:6,9,10,16
chr1	176103954	.	C	T	704.77	PASS	AC=1;AF=0.5;AN=2;DP=1073;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant12-variant16-variant19-variant20-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:658,0,570:14,6,17,7
chr1	176129276	.	G	A	1939.37	PASS	AC=1;AF=0.5;AN=2;DP=3325;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant12-variant16-variant19-variant20-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,67:136:99:1513,0,1492:36,33,33,34
chr1	176132292	.	C	T	1937.82	PASS	AC=2;AF=0.977;AN=2;DP=1761;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1364,129,0:0,0,15,28
chr1	176153658	.	T	C	435.8	PASS	AC=2;AF=0.837;AN=2;DP=1196;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:588,60,0:0,0,12,8
chr1	176176495	.	G	A	1765.81	PASS	AC=1;AF=0.5;AN=2;DP=2931;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant16-variant19-variant20-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,55:111:99:1282,0,1332:30,26,23,32
chr1	176176659	.	C	G	776.17	PASS	AC=2;AF=1;AN=2;DP=1408;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:931,87,0:0,0,11,18
chr1	176525194	.	G	A	607.77	PASS	AC=2;AF=0.643;AN=2;DP=1214;MQ=60;set=variant2-variant4-variant5-variant6-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1308,117,0:0,0,23,16
chr1	176525970	.	C	G	1924.21	PASS	AC=1;AF=0.5;AN=2;DP=320;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,78:148:99:1952,0,1845:35,35,40,38
chr1	176660047	.	TAA	T,TA,TAAA,TAAAA	699.68	PASS	AC=0,1,1,0;AF=0.167,0.417,0.131,0.095;AN=2;DP=2766;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/3:53:99:3,2,23,25
chr1	176660247	.	C	T	3433.57	PASS	AC=1;AF=0.708;AN=2;DP=9207;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:129,121:250:99:2846,0,3297:59,70,60,61
chr1	176664842	.	C	A	2044.03	PASS	AC=1;AF=0.625;AN=2;DP=3136;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant14-variant16-variant17-variant18-variant21-variant29-variant33-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,59:124:99:1599,0,1554:34,31,35,24
chr1	176665102	.	ATGTGTGTGTGTGTGTGTGTG	ATGTGTGTGTGTGTGTGTGTGTG,A,ATGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTGTGTGTGTG	53.55	PASS	AC=0,1,0,0,0,0,1;AF=0.097,0.355,0.21,0.016,0.016,0.016,0.016;AN=2;DP=675;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/7:6:99:0,0,1,5
chr1	176668823	.	G	A	909.66	PASS	AC=1;AF=0.5;AN=2;DP=378;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant11-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:908,0,854:12,19,14,19
chr1	176671881	.	T	TTGTGTG,TTG,TTGTG	634.16	PASS	AC=0,1,0;AF=0.2,0.325,0.05;AN=2;DP=1768;set=variant2-variant3-variant5-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant11-variant15-filterInvariant17-filterInvariant20-variant27-variant30-variant31-variant32-filterInvariant33-filterInvariant37-variant39-variant41-variant42	GT:DP:GQ:SB	0/2:38:99:12,13,3,10
chr1	176671912	.	TGAGAGAGA	T,TGA,TGAGA,TGAGAGA,TGAGAGAGAGA	744.16	PASS	AC=0,0,0,0,1;AF=0.318,0.136,0.045,0.091,0.023;AN=2;DP=1349;set=variant4-variant9-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant21-filterInvariant22-variant23-variant25-filterInvariant26-filterInvariant27-variant29-variant33-variant37-variant38-variant40-filterInvariant41-variant44	GT:DP:GQ:SB	0/5:40:99:10,20,3,7
chr1	176671914	.	A	T	541.49	PASS	AC=1;AF=0.5;AN=2;DP=433;set=variant3-variant6-variant7-variant11-filterInvariant18-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,14:42:99:484,0,1108:12,16,3,11
chr1	176671916	.	A	T	541.56	PASS	AC=1;AF=0.5;AN=2;DP=311;set=variant3-variant6-variant7-variant11-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,14:42:99:484,0,1108:12,16,3,11
chr1	176671918	.	A	T	541.49	PASS	AC=1;AF=0.5;AN=2;DP=306;set=variant3-variant6-variant7-variant11-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,14:42:99:484,0,1108:12,16,3,11
chr1	176671946	.	A	T	614.82	PASS	AC=1;AF=0.5;AN=2;DP=178;FractionInformativeReads=1;set=variant3-variant6-variant7-variant11-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:635,0,593:3,12,2,16
chr1	176679384	.	G	T	619.65	PASS	AC=1;AF=0.5;AN=2;DP=163;MQ=60;set=variant3-variant6-variant7-variant11-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:452,0,278:1,8,1,12
chr1	176681165	.	ATG	A,ATGTG	586.34	PASS	AC=0,1;AF=0.625,0.021;AN=2;DP=1377;set=variant2-variant4-variant5-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant21-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:32:99:3,13,4,12
chr1	176734756	.	C	T	2611.24	PASS	AC=1;AF=0.659;AN=2;DP=3325;MQ=60;set=variant3-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant21-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,95:166:99:2343,0,1811:45,26,56,39
chr1	176760467	.	A	G	669.12	PASS	AC=1;AF=0.5;AN=2;DP=104;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:697,0,460:12,3,17,6
chr1	176762955	.	T	G	769.83	PASS	AC=1;AF=0.5;AN=2;DP=200;FractionInformativeReads=1;MQ=60;set=variant32-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,22:37:99:570,0,467:2,13,6,16
chr1	176809062	.	C	T	484.75	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.686;QD=16.72;ReadPosRankSum=-3.21;SOR=0.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:513,0,256:8,4,11,6
chr1	176811754	.	G	C	3285.51	PASS	AC=1;AF=0.5;AN=2;DP=1935;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant8-variant22-variant28-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,110:185:99:2589,0,1872:47,28,58,52
chr1	176811873	.	C	T	2307.48	PASS	AC=1;AF=0.731;AN=2;DP=6320;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,81:149:99:2004,0,1632:28,40,33,48
chr1	176811921	.	C	T	1270.01	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=3.069;FractionInformativeReads=1;MQ=60;MQRankSum=-1.605;QD=15.12;ReadPosRankSum=0.502;SOR=0.427;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,45:84:99:1298,0,1151:11,28,16,29
chr1	176813190	.	A	G	384.93	PASS	AC=1;AF=0.756;AN=2;DP=999;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:243,0,454:11,7,5,6
chr1	176813997	.	C	G	721.39	PASS	AC=1;AF=0.5;AN=2;DP=646;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant15-variant22-variant28-variant32-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,18:43:99:507,0,878:5,20,4,14
chr1	176830978	.	C	T	115.43	PASS	AC=2;AF=0.917;AN=2;DP=1022;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:62:583,62,0:0,0,12,9
chr1	176831561	.	T	C	329.1	PASS	AC=1;AF=0.5;AN=2;DP=220;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant8-variant22-variant28-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:264,0,303:5,6,4,5
chr1	176832273	.	C	T	3030.15	PASS	AC=1;AF=0.5;AN=2;DP=256;FS=2.128;FractionInformativeReads=1;MQ=60;MQRankSum=2.691;QD=11.84;ReadPosRankSum=1.7;SOR=0.566;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:132,124:256:99:3058,0,3480:80,52,71,53
chr1	176832613	.	C	T	115.39	PASS	AC=2;AF=0.929;AN=2;DP=1519;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1537,129,0:0,0,18,25
chr1	176845410	.	G	C	456.87	PASS	AC=1;AF=0.85;AN=2;DP=1063;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,9:37:99:234,0,723:17,11,6,3
chr1	176845528	.	C	T	629.25	PASS	AC=2;AF=0.917;AN=2;DP=2778;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2403,213,0:0,0,42,29
chr1	176857347	.	A	G	684.56	PASS	AC=2;AF=0.917;AN=2;DP=3258;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2306,219,0:0,0,33,40
chr1	176863836	.	G	C	377.45	PASS	AC=2;AF=0.917;AN=2;DP=3307;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2585,201,0:0,0,35,32
chr1	176863842	.	C	T	1247.41	PASS	AC=1;AF=0.5;AN=2;DP=721;MQ=60;set=variant3-variant4-variant7-variant8-variant22-variant28-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,34:66:99:880,0,790:15,17,20,14
chr1	176863867	.	T	C	298.66	PASS	AC=2;AF=0.917;AN=2;DP=3775;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2291,225,0:0,0,37,38
chr1	176905200	.	A	G	976.69	PASS	AC=1;AF=0.643;AN=2;DP=453;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant22-variant31-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:856,0,1910:20,8,17,6
chr1	176905201	.	T	G	827.33	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.183;QD=16.22;ReadPosRankSum=-1.543;SOR=0.795;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:856,0,1910:20,8,17,6
chr1	176913215	.	AT	A,ATT	247.8	PASS	AC=0,1;AF=0.571,0.036;AN=2;DP=887;set=variant2-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-filterInvariant23-filterInvariant24-filterInvariant25-variant29-filterInvariant31-variant32-variant33-variant34-variant37-filterInvariant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:15:89:1,5,0,9
chr1	176914954	.	TATC	T	661.18	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=1.26;FractionInformativeReads=1;MQ=60;MQRankSum=0.02;QD=13.22;ReadPosRankSum=1.479;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,19:50:99:698,0,1244:23,8,15,4
chr1	176915022	.	A	G	1153.79	PASS	AC=2;AF=0.65;AN=2;DP=1317;MQ=60;set=variant2-variant3-variant5-variant12-variant19-variant22-variant31-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3829,381,0:0,0,77,50
chr1	176918504	.	A	G	1654.31	PASS	AC=1;AF=0.625;AN=2;DP=1200;MQ=60;set=variant2-variant3-variant5-variant22-variant31-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,81:141:99:2085,0,1389:29,31,40,41
chr1	176918675	.	T	G	372.11	PASS	AC=2;AF=0.636;AN=2;DP=295;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant12-variant19-variant22-variant31-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:801,60,0:0,0,2,18
chr1	176983910	.	G	A	2324.23	PASS	AC=1;AF=0.5;AN=2;DP=208;FS=4.742;FractionInformativeReads=1;MQ=60;MQRankSum=-2.046;QD=11.17;ReadPosRankSum=3.829;SOR=0.776;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:108,100:208:99:2352,0,2595:57,51,46,54
chr1	176984127	.	T	A	244.36	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=2.197;FractionInformativeReads=1;MQ=60;MQRankSum=-0.533;QD=11.64;ReadPosRankSum=1.741;SOR=1.445;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:273,0,385:3,9,1,8
chr1	176992553	.	A	G	3125.91	PASS	AC=1;AF=0.688;AN=2;DP=4051;MQ=60;set=variant2-variant3-variant4-variant5-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,72:135:99:1862,0,1526:36,27,35,37
chr1	176992676	.	C	T	606.18	PASS	AC=1;AF=0.611;AN=2;DP=1790;MQ=60;set=variant2-variant3-variant4-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,32:66:99:861,0,820:12,22,8,24
chr1	177199323	.	C	T	467.29	PASS	AC=1;AF=0.619;AN=2;DP=1480;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant11-variant12-variant16-variant17-variant18-variant20-variant22-variant28-variant29-variant31-variant32-variant33-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,31:66:99:718,0,923:12,23,11,20
chr1	177247854	.	C	G	1083.79	PASS	AC=1;AF=0.571;AN=2;DP=1882;MQ=60;set=variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant20-variant22-variant26-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,37:64:99:997,0,768:10,17,13,24
chr1	177250855	.	TACAC	TACACAC,T	196.07	PASS	AC=1,0;AF=0.464,0.036;AN=2;DP=403;MQ=60;set=variant3-variant5-variant7-variant12-variant16-variant18-variant20-variant21-variant22-variant32-variant33-variant38-variant39-variant41	GT:DP:GQ:SB	0/1:11:99:2,4,0,5
chr1	177898799	.	C	T	430.64	PASS	AC=1;AF=0.645;AN=2;DP=1611;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:479,0,625:13,13,12,6
chr1	177899121	.	G	C	723.57	PASS	AC=1;AF=0.567;AN=2;DP=1115;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant14-variant28-variant29-variant30-variant33-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,36:61:99:897,0,573:12,13,16,20
chr1	177901713	.	T	C	2799.42	PASS	AC=1;AF=0.625;AN=2;DP=6423;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,77:154:99:1803,0,1908:43,34,43,34
chr1	177901741	.	A	G	2792.04	PASS	AC=1;AF=0.638;AN=2;DP=6727;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,78:162:99:1796,0,2170:47,37,44,34
chr1	177902753	.	G	C	1482.9	PASS	AC=1;AF=0.625;AN=2;DP=5276;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,90:194:99:2023,0,2509:54,50,45,45
chr1	177906657	.	G	A	1002.25	PASS	AC=1;AF=0.56;AN=2;DP=3409;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant16-variant17-variant19-variant22-variant23-variant24-variant26-variant31-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,51:119:99:1240,0,1768:33,35,26,25
chr1	177906841	.	TTTTG	T	622.24	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=0;FractionInformativeReads=0.736;MQ=60;MQRankSum=0.606;QD=11.74;ReadPosRankSum=2.69;SOR=0.518;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:660,0,940:5,16,5,13
chr1	177913980	.	T	C	407.06	PASS	AC=2;AF=0.942;AN=2;DP=393;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:415,30,0:0,0,1,9
chr1	177914728	.	A	G	972.19	PASS	AC=2;AF=0.702;AN=2;DP=4349;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3292,285,0:0,0,53,42
chr1	177915474	.	A	C	1299.27	PASS	AC=2;AF=0.829;AN=2;DP=3731;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2318,222,0:0,0,42,32
chr1	177916890	.	A	AAGGGACAGGGAGGGGAGGTGAGGGG	265.57	PASS	AC=2;AF=0.931;AN=2;DP=257;FS=0;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:34:497,34,0:0,0,6,0
chr1	177921434	.	T	A	691.15	PASS	AC=2;AF=0.779;AN=2;DP=1506;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1156,117,0:0,0,14,25
chr1	177923440	.	T	G	3436.75	PASS	AC=1;AF=0.609;AN=2;DP=3232;MQ=60;set=variant2-variant3-variant7-variant8-variant10-variant12-variant16-variant17-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,55:120:99:1446,0,1695:39,26,31,24
chr1	177929554	.	C	T	2592.01	PASS	AC=2;AF=0.633;AN=2;DP=3191;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2505,257,0:0,0,39,47
chr1	177929987	.	T	C	1780.75	PASS	AC=2;AF=0.837;AN=2;DP=4865;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3299,321,0:0,0,61,46
chr1	177930642	.	G	A	1447.51	PASS	AC=2;AF=0.677;AN=2;DP=2337;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2888,267,0:0,0,55,34
chr1	177930894	.	C	T	1670.61	PASS	AC=2;AF=0.849;AN=2;DP=2201;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1498,131,0:0,0,18,26
chr1	177931086	.	C	T	298.19	PASS	AC=2;AF=0.683;AN=2;DP=638;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:532,57,0:0,0,7,12
chr1	177933443	.	G	A	456.31	PASS	AC=2;AF=0.683;AN=2;DP=3676;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:2993,305,0:0,0,40,62
chr1	177933505	.	C	T	869.19	PASS	AC=1;AF=0.567;AN=2;DP=813;MQ=60;set=variant4-variant5-variant7-variant9-variant10-variant14-variant15-variant19-variant28-variant30-variant34-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:613,0,553:3,15,5,16
chr1	177934351	.	G	T	1541.08	PASS	AC=1;AF=0.567;AN=2;DP=1221;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant9-variant10-variant14-variant15-variant19-variant28-variant30-variant34-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,36:85:99:852,0,1313:18,31,14,22
chr1	177934467	.	T	C	106.77	PASS	AC=2;AF=0.7;AN=2;DP=312;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:447,30,0:0,0,0,10
chr1	177935050	.	T	A	1210.55	PASS	AC=1;AF=0.567;AN=2;DP=939;MQ=60;set=variant4-variant5-variant7-variant9-variant10-variant14-variant15-variant19-variant28-variant30-variant34-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:645,0,851:19,15,14,13
chr1	177935203	.	A	G	466.35	PASS	AC=2;AF=0.677;AN=2;DP=1809;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,40:42:76:1158,76,0:1,1,18,22
chr1	177935275	.	A	G	575.81	PASS	AC=2;AF=0.849;AN=2;DP=1313;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:800,77,0:0,0,7,19
chr1	177937278	.	A	C	1649.36	PASS	AC=1;AF=0.5;AN=2;DP=242;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,67:136:99:1678,0,1700:28,41,28,39
chr1	177938972	.	C	T	715.35	PASS	AC=2;AF=0.571;AN=2;DP=276;MQ=60;set=variant6-variant10-variant11-variant15-variant19-variant21-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:933,96,0:0,0,21,11
chr1	178063551	.	A	C	1152.8	PASS	AC=2;AF=1;AN=2;DP=1822;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1240,111,0:0,0,17,20
chr1	178408780	.	C	T	492.63	PASS	AC=1;AF=0.5;AN=2;DP=205;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant19-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:392,0,582:4,15,2,11
chr1	178434963	.	AAAAGAAAGAAAGAG	A	529.42	PASS	AC=1;AF=0.5;AN=2;DP=133;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant19-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:439,0,1987:12,5,8,5
chr1	178444046	.	G	A	1676	PASS	AC=1;AF=0.5;AN=2;DP=921;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant19-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:85,49:134:99:1149,0,2392:40,45,20,29
chr1	178483231	.	G	A	627.96	PASS	AC=1;AF=0.617;AN=2;DP=2435;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,51:93:99:1251,0,1085:23,19,27,24
chr1	178484834	.	A	G	1436.14	PASS	AC=1;AF=0.645;AN=2;DP=2124;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:469,0,931:24,2,13,9
chr1	178489978	.	T	G	1511.29	PASS	AC=1;AF=0.617;AN=2;DP=3788;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,47:108:99:1310,0,1540:31,30,24,23
chr1	178491785	.	C	CT,CTT	143.93	PASS	AC=1,0;AF=0.583,0.033;AN=2;DP=1319;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:43:99:7,12,7,17
chr1	178492447	.	T	A	1164.28	PASS	AC=1;AF=0.654;AN=2;DP=2809;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,35:74:99:1055,0,1050:27,12,27,8
chr1	178492635	.	T	C	4060.39	PASS	AC=1;AF=0.654;AN=2;DP=10209;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,117:231:99:2903,0,2522:52,62,54,63
chr1	178511825	.	A	G	598.35	PASS	AC=1;AF=0.756;AN=2;DP=1536;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:349,0,673:17,3,10,3
chr1	178511892	.	G	C	1290.64	PASS	AC=1;AF=0.56;AN=2;DP=2665;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant33-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:928,0,1308:32,19,24,15
chr1	178511924	.	C	T	1505.75	PASS	AC=1;AF=0.558;AN=2;DP=3543;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant33-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,52:119:99:1194,0,1554:36,31,31,21
chr1	178514622	.	C	T	1232.93	PASS	AC=1;AF=0.558;AN=2;DP=3394;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant33-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,54:98:99:1575,0,1136:21,23,26,28
chr1	178517591	.	A	G	3745.81	PASS	AC=1;AF=0.814;AN=2;DP=3971;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,30:70:99:707,0,1024:21,19,16,14
chr1	178518008	.	A	G	9211.03	PASS	AC=1;AF=0.814;AN=2;DP=9323;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,113:232:99:2813,0,2997:46,73,46,67
chr1	178646748	.	A	T	580.2	PASS	AC=2;AF=0.636;AN=2;DP=1269;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1517,105,0:0,0,18,15
chr1	178646752	.	A	C	1635.33	PASS	AC=2;AF=1;AN=2;DP=1728;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1468,99,0:0,0,18,15
chr1	178646815	.	C	T	509	PASS	AC=1;AF=0.5;AN=2;DP=400;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant19-variant32-variant35-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,32:48:99:792,0,396:7,9,15,17
chr1	178694279	.	TGC	T	1168.58	PASS	AC=1;AF=0.989;AN=2;DP=2000;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,27:51:99:857,0,757:19,5,20,7
chr1	178694322	.	C	A	1028.25	PASS	AC=1;AF=0.757;AN=2;DP=3404;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,49:96:99:1409,0,1358:36,11,36,13
chr1	178694396	.	GGCA	G	4018.14	PASS	AC=1;AF=0.5;AN=2;DP=237;FS=0.482;FractionInformativeReads=0.966;MQ=60;MQRankSum=2.401;QD=16.95;ReadPosRankSum=2.199;SOR=0.734;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:121,108:229:99:4055,0,4698:66,55,60,48
chr1	178694402	.	G	GGCA	11199.8	PASS	AC=1;AF=0.966;AN=2;DP=11222;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:121,116:237:99:4294,0,4567:68,53,62,54
chr1	178745798	.	CTT	CT,C	176.18	PASS	AC=1,0;AF=0.679,0.038;AN=2;DP=2048;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:35:99:13,10,7,5
chr1	178776985	.	G	A	185.15	PASS	AC=2;AF=1;AN=2;DP=188;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:173,12,0:0,0,4,0
chr1	178780650	.	A	G	260.04	PASS	AC=1;AF=0.718;AN=2;DP=980;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:220,0,400:5,9,3,6
chr1	178820038	.	CATA	C	1390.88	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=8.812;FractionInformativeReads=0.956;MQ=60;MQRankSum=1.271;QD=15.28;ReadPosRankSum=1.639;SOR=1.039;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,38:87:99:1428,0,2114:28,21,15,23
chr1	178820159	.	C	A	1094.16	PASS	AC=1;AF=0.718;AN=2;DP=3832;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,28:93:99:686,0,1705:33,32,19,9
chr1	178854162	.	C	T	366.27	PASS	AC=1;AF=0.718;AN=2;DP=954;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:362,0,296:7,3,9,7
chr1	178858711	.	C	A	223.69	PASS	AC=1;AF=0.69;AN=2;DP=1384;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:274,0,568:14,7,10,2
chr1	178858759	.	G	A	613.5	PASS	AC=1;AF=0.69;AN=2;DP=2359;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,22:56:99:532,0,855:20,14,12,10
chr1	178887208	.	A	T	1515.45	PASS	AC=1;AF=0.707;AN=2;DP=3665;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,61:124:99:1552,0,1813:45,18,40,21
chr1	178888856	.	A	G	4275.99	PASS	AC=1;AF=0.707;AN=2;DP=8227;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,123:284:99:4631,0,9182:80,81,59,64
chr1	178888858	.	C	T	4603.25	PASS	AC=1;AF=0.5;AN=2;DP=284;FS=0.435;FractionInformativeReads=1;MQ=60;MQRankSum=-1.556;QD=16.21;ReadPosRankSum=0.402;SOR=0.739;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:163,121:284:99:4631,0,9182:80,83,58,63
chr1	178889007	.	A	C	3844.43	PASS	AC=1;AF=0.5;AN=2;DP=530;FractionInformativeReads=1;MQ=60;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:121,129:250:99:3488,0,3313:67,54,67,62
chr1	179019238	.	C	G	237.87	PASS	AC=1;AF=0.5;AN=2;DP=121;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant11-variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:666,0,320:10,0,17,1
chr1	179019576	.	C	G	834.81	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.939;QD=12.46;ReadPosRankSum=-0.347;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:863,0,1113:8,29,7,23
chr1	179041011	.	A	G	2048.84	PASS	AC=2;AF=0.705;AN=2;DP=2338;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1883,182,0:0,0,34,27
chr1	179041031	.	A	G	780.41	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=6.462;FractionInformativeReads=1;MQ=60;MQRankSum=-0.837;QD=11.48;ReadPosRankSum=-0.197;SOR=1.378;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:809,0,953:18,19,20,11
chr1	179041299	.	G	C	1147.95	PASS	AC=1;AF=0.5;AN=2;DP=96;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.737;QD=11.96;ReadPosRankSum=0.894;SOR=0.767;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,49:96:99:1176,0,1146:21,26,21,28
chr1	179041398	.	A	G	1499.52	PASS	AC=2;AF=0.705;AN=2;DP=2052;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1377,120,0:0,0,14,26
chr1	179041692	.	CT	C	3530.04	PASS	AC=2;AF=0.705;AN=2;DP=5818;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,120:123:99:3139,287,0:2,1,76,44
chr1	179041854	.	T	C	3295.36	PASS	AC=1;AF=0.5;AN=2;DP=275;FS=2.014;FractionInformativeReads=1;MQ=60;MQRankSum=1.312;QD=11.98;ReadPosRankSum=-0.319;SOR=0.84;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:142,133:275:99:3324,0,3492:69,73,60,73
chr1	179041970	.	G	T	1945.41	PASS	AC=1;AF=0.5;AN=2;DP=962;MQ=60;set=variant2-variant10-variant11-variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:90,99:189:99:2664,0,2339:48,42,44,55
chr1	179042227	.	T	C	2911.19	PASS	AC=1;AF=0.658;AN=2;DP=2798;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,36:76:99:968,0,1102:17,23,13,23
chr1	179042270	.	T	C	737.73	PASS	AC=1;AF=0.5;AN=2;DP=107;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,30:57:99:865,0,794:8,19,11,19
chr1	179043011	.	C	A	783.63	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=1.007;FractionInformativeReads=1;MQ=60;MQRankSum=-0.191;QD=13.28;ReadPosRankSum=-1.412;SOR=0.95;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:812,0,975:16,17,11,15
chr1	179043539	.	T	G	6280.99	PASS	AC=2;AF=0.705;AN=2;DP=5509;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:4717,375,0:0,0,56,69
chr1	179043939	.	G	A	2941.71	PASS	AC=1;AF=0.5;AN=2;DP=1428;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant11-variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:128,134:262:99:3295,0,3052:63,65,66,68
chr1	179044326	.	T	TA	529.47	PASS	AC=1;AF=0.5;AN=2;DP=112;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:369,0,496:17,7,13,7
chr1	179044455	.	A	G	2667.93	PASS	AC=1;AF=0.5;AN=2;DP=201;FS=1.741;FractionInformativeReads=1;MQ=60;MQRankSum=-0.551;QD=13.27;ReadPosRankSum=1.583;SOR=0.841;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,109:201:99:2696,0,2049:50,42,63,46
chr1	179045500	.	C	A	606.15	PASS	AC=2;AF=0.694;AN=2;DP=1046;FractionInformativeReads=1;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1004,93,0:0,0,11,20
chr1	179051300	.	T	C	3207.82	PASS	AC=2;AF=0.78;AN=2;DP=3437;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3053,261,0:0,0,46,41
chr1	179051733	.	C	T	883.16	PASS	AC=1;AF=0.591;AN=2;DP=268;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant10-variant12-variant24-variant33-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:420,0,376:4,8,6,10
chr1	179052002	.	T	G	3990.7	PASS	AC=1;AF=0.591;AN=2;DP=1061;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant10-variant12-variant24-variant33-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,37:92:99:921,0,2135:18,37,18,19
chr1	179052006	.	G	T	1751.4	PASS	AC=1;AF=0.574;AN=2;DP=2605;MQ=60;set=variant-variant2-variant4-variant6-variant9-variant11-variant12-variant16-variant17-variant18-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,53:93:99:1557,0,1516:19,21,19,34
chr1	179054557	.	CA	C,CAA	89.07	PASS	AC=1,0;AF=0.409,0.106;AN=2;DP=2106;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-filterInvariant9-variant10-variant11-variant13-filterInvariant14-filterInvariant15-filterInvariant18-variant20-filterInvariant21-filterInvariant22-variant24-variant25-variant27-variant28-filterInvariant29-filterInvariant30-variant31-variant32-filterInvariant33-filterInvariant35-variant37-variant38-filterInvariant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:47:99:22,11,11,3
chr1	179054692	.	T	G	7903.21	PASS	AC=2;AF=0.731;AN=2;DP=11288;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,265:265:99:7651,793,0:0,0,136,129
chr1	179064875	.	A	G	546.63	PASS	AC=2;AF=0.774;AN=2;DP=1025;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:808,81,0:0,0,15,12
chr1	179065125	.	C	T	200.8	PASS	AC=1;AF=0.682;AN=2;DP=100;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant11-variant17-variant21-variant27-variant29-variant31-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:63:208,0,63:0,2,0,6
chr1	179068851	.	A	G	323.91	PASS	AC=2;AF=0.643;AN=2;DP=1499;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1504,135,0:0,0,22,23
chr1	179069429	.	C	T	3750.77	PASS	AC=2;AF=0.705;AN=2;DP=3523;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2721,230,0:0,0,45,32
chr1	179070120	.	C	T	1134.13	PASS	AC=2;AF=0.705;AN=2;DP=1883;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,48:49:99:1541,137,0:0,1,25,23
chr1	179070334	.	C	G	1387.72	PASS	AC=2;AF=0.705;AN=2;DP=1578;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1028,99,0:0,0,18,15
chr1	179070512	.	C	CT,CTT	167.15	PASS	AC=0,1;AF=0.667,0.017;AN=2;DP=440;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:9:99:2,3,0,4
chr1	179071756	.	G	A	378.12	PASS	AC=2;AF=0.667;AN=2;DP=944;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:825,66,0:0,0,8,14
chr1	179071865	.	G	A	157.45	PASS	AC=2;AF=0.711;AN=2;DP=586;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:696,66,0:0,0,9,13
chr1	179071918	.	G	T	190.47	PASS	AC=2;AF=0.774;AN=2;DP=661;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:68:693,68,0:0,0,12,11
chr1	179072258	.	G	A	2214.12	PASS	AC=1;AF=0.5;AN=2;DP=175;FS=0.561;FractionInformativeReads=1;MQ=60;MQRankSum=0.224;QD=12.65;ReadPosRankSum=-0.266;SOR=0.779;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:78,97:175:99:2242,0,1937:41,37,53,44
chr1	179072728	.	T	C	3877.52	PASS	AC=2;AF=0.643;AN=2;DP=9194;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,277:279:99:8098,786,0:1,1,128,149
chr1	179072966	.	C	T	1597.8	PASS	AC=2;AF=0.705;AN=2;DP=1525;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1399,120,0:0,0,17,23
chr1	179073039	.	C	G	1075.65	PASS	AC=2;AF=0.786;AN=2;DP=1329;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1086,99,0:0,0,17,16
chr1	179074869	.	T	G	465.92	PASS	AC=2;AF=0.643;AN=2;DP=2083;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2150,224,0:0,0,37,38
chr1	179075755	.	A	G	390.56	PASS	AC=2;AF=0.826;AN=2;DP=2014;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1584,150,0:0,0,23,27
chr1	179076078	.	T	C	1205.06	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=2.139;FractionInformativeReads=1;MQ=60;MQRankSum=-1.073;QD=16.07;ReadPosRankSum=-3.346;SOR=1.077;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,42:75:99:1233,0,954:22,11,31,11
chr1	179078250	.	A	T	722.74	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=2.213;FractionInformativeReads=1;MQ=60;MQRankSum=3.026;QD=11.85;ReadPosRankSum=0.474;SOR=1.058;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,26:61:99:751,0,924:20,15,17,9
chr1	179080115	.	CTTTT	CTT,CT,CTTT,C	982.21	PASS	AC=2,0,0,0;AF=0.303,0.289,0.118,0.013;AN=2;DP=2451;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:29:86:0,0,3,26
chr1	179087934	.	T	C	2770.85	PASS	AC=2;AF=0.705;AN=2;DP=2578;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1712,141,0:0,0,12,35
chr1	179089213	.	C	T	1225.42	PASS	AC=2;AF=0.705;AN=2;DP=1269;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1095,102,0:0,0,24,10
chr1	179089475	.	C	G	1014.9	PASS	AC=2;AF=0.705;AN=2;DP=1105;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:680,57,0:0,0,4,15
chr1	179089491	.	A	C	821.69	PASS	AC=2;AF=0.705;AN=2;DP=879;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:477,45,0:0,0,4,11
chr1	179089518	.	C	G	450.08	PASS	AC=2;AF=0.716;AN=2;DP=440;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:311,24,0:0,0,2,6
chr1	179091050	.	ATTTTTT	ATT,A,ATTTT,AT	107.96	PASS	AC=0,0,0,2;AF=0.283,0.13,0.109,0.261;AN=2;DP=469;set=variant-variant2-variant5-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant20-variant21-variant25-variant28-variant29-variant32-variant36-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	4/4:11:15:2,0,0,9
chr1	179198653	.	T	C	1336.7	PASS	AC=1;AF=0.629;AN=2;DP=3961;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,39:109:99:849,0,1635:39,31,20,19
chr1	179198767	.	ACGCCGCCGC	ACGCCGCCGCCGCCGCCGC,ACGCCGCCGCCGCCGC,ACGCCGC,A,ACGCCGCCGCCGCCGCCGCCGC	1617.13	PASS	AC=0,0,1,0,0;AF=0.05,0.383,0.167,0.017,0.017;AN=2;DP=3973;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41	GT:DP:GQ:SB	0/3:97:99:17,35,17,28
chr1	179292442	.	G	A	218.24	PASS	AC=1;AF=0.694;AN=2;DP=1076;MQ=60;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,18:54:99:524,0,1019:20,16,15,3
chr1	179304892	.	T	C	468.23	PASS	AC=1;AF=0.694;AN=2;DP=1145;MQ=60;set=variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:356,0,464:8,11,3,10
chr1	179308803	.	G	A	582.43	PASS	AC=1;AF=0.545;AN=2;DP=532;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant8-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:251,0,417:1,11,0,7
chr1	179312102	.	T	C	1540.37	PASS	AC=1;AF=0.735;AN=2;DP=4771;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,65:134:99:1470,0,1654:37,32,33,32
chr1	179312249	.	AT	A	404.92	PASS	AC=1;AF=0.735;AN=2;DP=976;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:469,0,501:1,15,5,10
chr1	179316687	.	A	G	2570.16	PASS	AC=1;AF=0.591;AN=2;DP=727;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant12-variant17-variant19-variant24-variant28-variant33-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,19:52:99:409,0,828:22,11,13,6
chr1	179317895	.	ATGTGTGTGTGTGTGTGTGTGTGTGTG	ATGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTG,A,ATGTGTGTGTGTGTGTGTGTGTG,ATG,ATGTGTGTGTGTGTGTGTGTG,ATGTG,AAGTGTGTGTGTGTGTGTGTGTGTGTGTG	932.01	PASS	AC=0,0,1,0,0,0,0,0;AF=0.06,0.036,0.429,0.06,0.179,0.083,0.012,0.024;AN=2;DP=1333;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/3:18:99:6,2,10,0
chr1	179319580	.	T	C	3167.31	PASS	AC=1;AF=0.829;AN=2;DP=3936;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,45:102:99:1073,0,1429:26,31,17,28
chr1	179323738	.	C	A	5454.01	PASS	AC=1;AF=0.829;AN=2;DP=7381;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,69:151:99:1778,0,2248:49,33,43,26
chr1	179323919	.	A	G	7878.38	PASS	AC=1;AF=0.776;AN=2;DP=11737;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:167,161:328:99:3821,0,4329:92,75,85,76
chr1	179325506	.	A	G	2603.82	PASS	AC=1;AF=0.721;AN=2;DP=7131;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,87:164:99:2169,0,2082:25,52,35,52
chr1	179325633	.	A	G	939.58	PASS	AC=1;AF=0.847;AN=2;DP=604;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:266,0,228:0,7,1,6
chr1	179326065	.	A	C	690.08	PASS	AC=1;AF=0.721;AN=2;DP=1771;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,26:50:99:683,0,634:16,8,18,8
chr1	179326323	.	A	G	3381.76	PASS	AC=1;AF=0.829;AN=2;DP=5265;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,56:114:99:1490,0,1417:19,39,21,35
chr1	179326397	.	C	G	932.39	PASS	AC=1;AF=0.829;AN=2;DP=1161;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:466,0,533:4,11,5,8
chr1	179326708	.	TAC	T	5277.59	PASS	AC=1;AF=0.721;AN=2;DP=9401;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,127:243:99:4853,0,4608:53,63,52,75
chr1	179326747	.	C	A	6717.59	PASS	AC=1;AF=0.829;AN=2;DP=7740;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,84:169:99:2268,0,2124:33,52,22,62
chr1	179327017	.	A	G	1042.29	PASS	AC=1;AF=0.721;AN=2;DP=3122;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,45:86:99:1177,0,1008:24,17,27,18
chr1	179334801	.	C	A	284.46	PASS	AC=1;AF=0.712;AN=2;DP=383;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:194,0,105:3,0,4,2
chr1	179334840	.	C	T	325.96	PASS	AC=1;AF=0.712;AN=2;DP=615;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,17:19:31:443,0,31:2,0,10,7
chr1	179334917	.	G	C	675.12	PASS	AC=1;AF=0.706;AN=2;DP=1452;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,20:30:99:507,0,221:5,5,10,10
chr1	179334984	.	A	G	1231.22	PASS	AC=1;AF=0.86;AN=2;DP=2237;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:339,0,414:8,7,6,7
chr1	179335058	.	C	T	528.99	PASS	AC=1;AF=0.712;AN=2;DP=1541;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:453,0,378:7,7,9,6
chr1	179335158	.	C	T	490.56	PASS	AC=1;AF=0.712;AN=2;DP=1039;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:722,0,493:4,6,10,8
chr1	179335162	.	G	C	493.55	PASS	AC=1;AF=0.712;AN=2;DP=1009;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:722,0,493:4,6,10,7
chr1	179335366	.	C	T	61.77	PASS	AC=1;AF=0.852;AN=2;DP=135;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant13-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:77:114,0,77:2,1,2,1
chr1	179335499	.	C	CT,CTT	173.24	PASS	AC=1,0;AF=0.485,0.015;AN=2;DP=744;set=variant2-variant3-variant5-filterInvariant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:29:99:14,7,6,2
chr1	179339334	.	G	A	500.32	PASS	AC=1;AF=0.793;AN=2;DP=674;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:192,0,445:0,13,0,6
chr1	179401423	.	T	C	340.17	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=2.128;FractionInformativeReads=1;MQ=60;MQRankSum=1.306;QD=16.2;ReadPosRankSum=-1.828;SOR=0.204;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:368,0,231:6,1,9,5
chr1	179401564	.	CT	C	2211.43	PASS	AC=1;AF=0.849;AN=2;DP=2353;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:641,0,645:14,19,16,17
chr1	179426268	.	A	G	1812.99	PASS	AC=1;AF=0.545;AN=2;DP=514;set=variant3-variant6-variant12-variant17-variant19-variant24-variant28-variant33-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:412,0,421:5,12,3,11
chr1	179437827	.	G	A	327.99	PASS	AC=1;AF=0.878;AN=2;DP=434;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:158,0,188:1,5,1,5
chr1	179452520	.	C	A	669.27	PASS	AC=1;AF=0.6;AN=2;DP=143;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant17-variant19-variant24-variant28-variant33-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,246:1,7,0,3
chr1	179461975	.	T	C	4495.18	PASS	AC=1;AF=0.545;AN=2;DP=1408;MQ=60;set=variant3-variant6-variant12-variant17-variant19-variant24-variant28-variant33-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,51:94:99:1394,0,978:26,17,28,23
chr1	179462149	.	A	G	991.46	PASS	AC=2;AF=1;AN=2;DP=1158;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1041,78,0:0,0,2,24
chr1	179494612	.	CTACA	C,CTACATACA	166.99	PASS	AC=2,0;AF=0.611,0.019;AN=2;DP=707;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant15-variant17-variant19-variant21-variant22-variant24-variant26-variant28-variant29-variant32-variant33-variant37-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:14:42:0,0,4,10
chr1	179494665	.	C	T	103.54	PASS	AC=2;AF=0.913;AN=2;DP=400;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:411,33,0:0,0,2,9
chr1	179497359	.	T	C	422.99	PASS	AC=2;AF=0.915;AN=2;DP=499;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:271,21,0:0,0,4,3
chr1	179519608	.	A	G	1663.4	PASS	AC=2;AF=0.604;AN=2;DP=885;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant9-variant11-variant12-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant28-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1624,129,0:0,0,37,6
chr1	179519880	.	T	C	3153.95	PASS	AC=2;AF=0.94;AN=2;DP=4395;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3177,272,0:0,0,40,51
chr1	179520151	.	C	T	6711.92	PASS	AC=2;AF=0.94;AN=2;DP=8825;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,212:212:99:6554,636,0:0,0,92,120
chr1	179526052	.	A	T	353.33	PASS	AC=2;AF=0.583;AN=2;DP=195;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant12-variant19-variant24-variant33-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:602,45,0:0,0,13,2
chr1	179526461	.	C	T	668.66	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,21:33:99:639,0,319:3,9,6,15
chr1	179544898	.	T	C	3368.49	PASS	AC=2;AF=0.965;AN=2;DP=5006;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2943,269,0:0,0,42,48
chr1	179545195	.	G	C	265.35	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=8.82;FractionInformativeReads=1;MQ=60;MQRankSum=-0.241;QD=15.61;ReadPosRankSum=-1.107;SOR=3.056;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:294,0,189:4,4,1,8
chr1	179560624	.	T	C	719.65	PASS	AC=2;AF=0.965;AN=2;DP=1819;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1564,153,0:0,0,31,20
chr1	179560689	.	T	G	963.06	PASS	AC=1;AF=0.5;AN=2;DP=201;FractionInformativeReads=1;MQ=60;set=variant6-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,43:92:99:1068,0,1101:28,21,22,21
chr1	179560718	.	T	C	759.96	PASS	AC=1;AF=0.675;AN=2;DP=2071;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant27-variant32-variant34-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,53:102:99:1370,0,1127:26,23,30,23
chr1	179561154	.	C	T	722.05	PASS	AC=1;AF=0.675;AN=2;DP=1072;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant27-variant32-variant34-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:529,0,883:18,16,11,14
chr1	179561527	.	C	G	559.79	PASS	AC=2;AF=0.556;AN=2;DP=845;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant9-variant11-variant17-variant18-variant21-variant25-variant26-variant28-variant31-variant34-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1277,143,0:0,0,25,23
chr1	179561645	.	A	C	597.61	PASS	AC=2;AF=0.821;AN=2;DP=2125;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1792,155,0:0,0,34,18
chr1	179561683	.	A	T	275.61	PASS	AC=2;AF=0.798;AN=2;DP=2730;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,62:64:99:1590,134,0:1,1,41,21
chr1	179562143	.	G	A	241.61	PASS	AC=2;AF=0.731;AN=2;DP=853;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:643,63,0:0,0,7,14
chr1	179562740	.	G	C	1849.32	PASS	AC=1;AF=0.673;AN=2;DP=4075;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant24-variant27-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,66:131:99:1843,0,1489:31,34,35,31
chr1	179599327	.	T	C	150.17	PASS	AC=1;AF=0.55;AN=2;DP=218;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant9-variant11-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant31-variant33-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:28:158,0,28:1,0,4,1
chr1	179604864	.	C	T	762.51	PASS	AC=2;AF=0.86;AN=2;DP=3871;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2321,234,0:0,0,44,34
chr1	179609589	.	G	T	1725.38	PASS	AC=1;AF=0.536;AN=2;DP=1965;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant17-variant18-variant21-variant25-variant26-variant28-variant31-variant34-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,79:139:99:1923,0,1462:26,34,33,46
chr1	179632727	.	G	A	122.47	PASS	AC=1;AF=0.676;AN=2;DP=337;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:76:120,0,76:0,2,0,3
chr1	179712223	.	A	C	596.86	PASS	AC=1;AF=0.596;AN=2;DP=1342;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:464,0,515:11,9,13,3
chr1	179712480	.	T	G	215.02	PASS	AC=2;AF=0.779;AN=2;DP=1553;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1112,102,0:0,0,12,22
chr1	179712616	.	G	T	152.64	PASS	AC=2;AF=0.708;AN=2;DP=771;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:59:631,59,0:0,0,11,9
chr1	179712632	.	C	T	208.9	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.346;QD=9.08;ReadPosRankSum=-2.74;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:237,0,262:7,7,4,5
chr1	179776841	.	A	G	106.19	PASS	AC=1;AF=0.581;AN=2;DP=585;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,15:22:99:503,0,140:3,4,13,2
chr1	179783922	.	T	A	1360.84	PASS	AC=1;AF=0.597;AN=2;DP=3767;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,62:129:99:1411,0,1559:31,36,28,34
chr1	179784240	.	GCGCGCACAGACACA	G,GCACA	328.91	PASS	AC=0,1;AF=0.333,0.167;AN=2;DP=91;set=variant9-variant17-variant41	GT:DP:GQ:SB	0/2:31:99:11,13,6,1
chr1	179784249	.	GACAC	CACAC,G	852.54	PASS	AC=0,1;AF=0.196,0.554;AN=2;DP=689;set=variant3-variant7-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant5-variant28-variant31-variant32-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:23:99:6,1,9,7
chr1	179810468	.	C	G	2797.02	PASS	AC=1;AF=0.5;AN=2;DP=214;FS=5.926;FractionInformativeReads=1;MQ=60;MQRankSum=-2.033;QD=13.07;ReadPosRankSum=1.502;SOR=0.401;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:111,103:214:99:2825,0,3269:36,75,42,61
chr1	179813613	.	T	C	5944.45	PASS	AC=1;AF=0.611;AN=2;DP=9346;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant22-variant23-variant24-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:178,163:341:99:4060,0,4783:95,83,87,76
chr1	179814457	.	A	C	2845.85	PASS	AC=1;AF=0.583;AN=2;DP=6234;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant13-variant14-variant15-variant17-variant22-variant24-variant28-variant29-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,98:222:99:2502,0,3344:58,66,43,55
chr1	179851159	.	TG	T	891.05	PASS	AC=2;AF=0.943;AN=2;DP=2028;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2106,178,0:0,0,38,21
chr1	179852074	.	T	C	1014.94	PASS	AC=2;AF=0.763;AN=2;DP=4948;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,104:106:99:3187,283,0:1,1,47,57
chr1	179852552	.	T	G	328.94	PASS	AC=2;AF=0.763;AN=2;DP=977;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1317,99,0:0,0,27,6
chr1	179858333	.	C	T	163.57	PASS	AC=2;AF=0.784;AN=2;DP=586;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:393,27,0:0,0,9,0
chr1	179858444	.	G	A	946.95	PASS	AC=2;AF=0.782;AN=2;DP=3261;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2013,206,0:0,0,41,28
chr1	179876988	.	C	G	1496.98	PASS	AC=2;AF=0.763;AN=2;DP=3368;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2242,218,0:0,0,40,33
chr1	179887125	.	G	A	4147.48	PASS	AC=2;AF=0.943;AN=2;DP=5392;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:4107,354,0:0,0,57,61
chr1	179887681	.	G	C	3150.48	PASS	AC=1;AF=0.738;AN=2;DP=7318;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,65:159:99:1623,0,2729:44,50,34,31
chr1	179887788	.	C	T	4521.92	PASS	AC=1;AF=0.711;AN=2;DP=10469;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:127,112:239:99:3081,0,3419:73,54,62,50
chr1	179888228	.	G	C	539.78	PASS	AC=2;AF=0.788;AN=2;DP=704;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:974,75,0:0,0,2,23
chr1	179983665	.	G	A	704.08	PASS	AC=2;AF=0.737;AN=2;DP=2309;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,72:73:99:2313,209,0:0,1,22,50
chr1	179989742	.	G	C	1581.68	PASS	AC=2;AF=0.737;AN=2;DP=5415;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4316,399,0:0,0,76,57
chr1	179992076	.	A	G	490.22	PASS	AC=2;AF=0.878;AN=2;DP=551;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,11:12:5:420,5,0:1,0,1,10
chr1	179993793	.	T	C	283.47	PASS	AC=2;AF=0.905;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:229,18,0:0,0,1,5
chr1	180010702	.	T	C	148.54	PASS	AC=2;AF=0.885;AN=2;DP=358;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:350,27,0:0,0,8,1
chr1	180022343	.	T	G	498.71	PASS	AC=2;AF=0.737;AN=2;DP=2911;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3073,264,0:0,0,25,63
chr1	180059736	.	GACATACCT	G	277.58	PASS	AC=2;AF=0.737;AN=2;DP=1004;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1285,87,0:0,0,27,2
chr1	180059811	.	A	C	1790.14	PASS	AC=2;AF=0.737;AN=2;DP=3558;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:2953,300,0:0,0,63,37
chr1	180062624	.	A	C	1065.34	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=0.783;FractionInformativeReads=1;MQ=60;MQRankSum=1.141;QD=11.71;ReadPosRankSum=-1.506;SOR=0.591;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,43:91:99:1094,0,1320:27,21,23,20
chr1	180080115	.	T	G	432.3	PASS	AC=2;AF=0.737;AN=2;DP=1612;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1316,126,0:0,0,27,15
chr1	180082703	.	C	CA	1924.9	PASS	AC=2;AF=0.737;AN=2;DP=5888;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,108:110:99:2989,285,0:1,1,48,60
chr1	180124288	.	G	C,T	801.38	PASS	AC=1,0;AF=0.429,0.071;AN=2;DP=403;MQ=60;set=variant22-variant24-variant32-variant35-variant37-variant41-filterInvariant42	GT:DP:GQ:SB	0/1:37:99:8,11,7,11
chr1	180124379	.	T	C	255.13	PASS	AC=1;AF=0.648;AN=2;DP=460;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:74:110,0,74:1,2,1,3
chr1	180135757	.	TG	T	890.42	PASS	AC=1;AF=0.611;AN=2;DP=578;MQ=60;set=variant6-variant22-variant23-variant24-variant32-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:591,0,624:10,11,8,12
chr1	180144291	.	CAA	CAAA,C	849	PASS	AC=2,0;AF=0.634,0.012;AN=2;DP=1365;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:26:29:3,0,16,7
chr1	180145088	.	A	G	1173.7	PASS	AC=2;AF=0.989;AN=2;DP=3019;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2433,227,0:0,0,37,39
chr1	180155376	.	C	G	373.55	PASS	AC=2;AF=0.866;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:607,42,0:0,0,4,10
chr1	180155382	.	AG	A	187.41	PASS	AC=2;AF=0.977;AN=2;DP=518;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:540,36,0:0,0,4,8
chr1	180159797	.	TC	T	234.66	PASS	AC=2;AF=0.888;AN=2;DP=399;FS=0;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:315,27,0:0,0,2,7
chr1	180165204	.	A	T	110.08	PASS	AC=1;AF=0.5;AN=2;DP=168;MQ=60;set=variant6-variant10-variant22-variant23-variant24-variant32-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:260,0,323:8,2,7,2
chr1	180166631	.	G	A	1061.67	PASS	AC=1;AF=0.5;AN=2;DP=348;FractionInformativeReads=1;MQ=60;set=variant21-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,66:129:99:1525,0,1546:27,36,32,34
chr1	180167440	.	A	G	898.91	PASS	AC=1;AF=0.545;AN=2;DP=1194;MQ=60;set=variant6-variant10-variant22-variant23-variant24-variant31-variant32-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:79,62:141:99:1538,0,1926:40,39,30,32
chr1	180168238	.	A	C	987.55	PASS	AC=1;AF=0.5;AN=2;DP=595;FractionInformativeReads=1;MQ=60;set=variant22-variant24-variant31-variant32-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,34:80:99:879,0,1128:21,25,16,18
chr1	180169330	.	C	T	2165.78	PASS	AC=1;AF=0.8;AN=2;DP=2995;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:661,0,801:16,12,13,13
chr1	180169405	.	G	A	889.91	PASS	AC=1;AF=0.5;AN=2;DP=618;MQ=60;set=variant22-variant24-variant31-variant32-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,31:63:99:855,0,864:18,14,19,12
chr1	180170049	.	G	A	431.38	PASS	AC=1;AF=0.5;AN=2;DP=276;FractionInformativeReads=1;MQ=60;set=variant22-variant24-variant31-variant32-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:602,0,568:9,10,11,12
chr1	180170361	.	C	T	791.46	PASS	AC=2;AF=0.817;AN=2;DP=1432;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1610,153,0:0,0,25,26
chr1	180171072	.	A	G	3519.3	PASS	AC=1;AF=0.8;AN=2;DP=4813;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,54:113:99:1417,0,1437:31,28,32,22
chr1	180171254	.	T	C	2636.36	PASS	AC=2;AF=0.845;AN=2;DP=3237;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2502,222,0:0,0,28,46
chr1	180171666	.	A	G	2955.62	PASS	AC=1;AF=0.8;AN=2;DP=4652;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,59:109:99:1374,0,1272:29,21,33,26
chr1	180172496	.	A	G	4313.93	PASS	AC=2;AF=0.845;AN=2;DP=4383;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:4452,310,0:0,0,45,57
chr1	180172512	.	T	C	3343.23	PASS	AC=2;AF=0.989;AN=2;DP=4299;FS=0;MQ=60;MQRankSum=-0.53;ReadPosRankSum=-0.598;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:4362,298,0:0,0,42,56
chr1	180172739	.	A	G	1596.27	PASS	AC=1;AF=0.5;AN=2;DP=814;FractionInformativeReads=1;MQ=60;set=variant22-variant24-variant31-variant32-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,63:108:99:1757,0,1114:24,21,36,27
chr1	180173206	.	A	AATG,AATGATG,AATGATGATG	5038.4	PASS	AC=1,1,0;AF=0.762,0.071,0.012;AN=2;DP=8012;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:124:99:1,1,45,77
chr1	180180669	.	A	G	1767.22	PASS	AC=2;AF=0.791;AN=2;DP=2803;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1617,165,0:0,0,28,27
chr1	180180756	.	C	T	512.71	PASS	AC=1;AF=0.54;AN=2;DP=679;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant8-variant12-variant13-variant15-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:326,0,437:6,10,4,7
chr1	180235407	.	G	A	529.95	PASS	AC=1;AF=0.571;AN=2;DP=223;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant30-variant31-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:255,0,511:11,8,7,5
chr1	180241155	.	G	T	316.67	PASS	AC=1;AF=0.5;AN=2;DP=140;MQ=60;set=variant15-variant25-variant30-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:274,0,516:3,13,3,8
chr1	180245228	.	T	TG	1801.2	PASS	AC=2;AF=0.955;AN=2;DP=2837;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2193,178,0:0,0,28,31
chr1	180245480	.	TTAAG	T	1081.54	PASS	AC=2;AF=0.943;AN=2;DP=1139;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:97:1440,97,0:0,0,12,20
chr1	180245972	.	G	GC	829.26	PASS	AC=2;AF=0.919;AN=2;DP=1776;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1625,126,0:0,0,21,21
chr1	180246013	.	TGTAA	T	973.76	PASS	AC=2;AF=0.919;AN=2;DP=1899;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1970,133,0:0,0,21,23
chr1	180246089	.	A	G	1267.11	PASS	AC=1;AF=0.583;AN=2;DP=296;MQ=60;set=variant8-variant13-variant16-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,31:52:99:740,0,543:13,8,12,19
chr1	180246261	.	C	T	1033.77	PASS	AC=2;AF=0.925;AN=2;DP=1431;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1027,87,0:0,0,13,16
chr1	180246451	.	G	A	243.11	PASS	AC=2;AF=0.85;AN=2;DP=1739;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1347,138,0:0,0,23,23
chr1	180247012	.	T	TG,TGG,TGGGG	1190.88	PASS	AC=2,0,0;AF=0.841,0.049,0.012;AN=2;DP=5749;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:121:99:2,0,80,39
chr1	180247477	.	CT	C	561.96	PASS	AC=2;AF=0.943;AN=2;DP=1190;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1160,93,0:0,0,18,13
chr1	180248436	.	T	A	70.66	PASS	AC=1;AF=0.854;AN=2;DP=477;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:129,0,103:1,3,0,4
chr1	180257692	.	A	C	1132.66	PASS	AC=2;AF=0.955;AN=2;DP=2032;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1476,129,0:0,0,13,30
chr1	180283659	.	T	C	295.67	PASS	AC=2;AF=0.976;AN=2;DP=468;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:305,24,0:0,0,7,1
chr1	180471040	.	CA	C	508.31	PASS	AC=2;AF=0.625;AN=2;DP=231;set=variant8-variant13-variant16-variant18-variant20-variant28-variant32-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:35:287,35,0:0,0,11,1
chr1	180471663	.	G	A	1335.37	PASS	AC=1;AF=0.5;AN=2;DP=592;FractionInformativeReads=1;MQ=60;set=variant20-variant28-variant34-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,53:100:99:1333,0,1177:25,22,27,26
chr1	180471879	.	C	T	6000.68	PASS	AC=1;AF=0.583;AN=2;DP=963;MQ=60;set=variant8-variant13-variant16-variant18-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,69:125:99:1806,0,1451:33,23,37,32
chr1	180757117	.	G	GT	253.02	PASS	AC=2;AF=0.989;AN=2;DP=666;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:482,36,0:0,0,2,10
chr1	180757144	.	G	A	112.45	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:108,0,117:0,3,0,3
chr1	180772414	.	G	A	45.18	PASS	AC=1;AF=0.536;AN=2;DP=313;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant25-variant26-variant27-variant28-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:267,0,189:4,1,7,0
chr1	180772435	.	A	G	340.98	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant8-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:205,0,447:11,2,5,1
chr1	180772708	.	T	C	996.96	PASS	AC=1;AF=0.5;AN=2;DP=387;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,48:91:99:1212,0,1045:21,22,21,27
chr1	180780524	.	A	G	1264.14	PASS	AC=1;AF=0.5;AN=2;DP=715;MQ=60;set=variant8-variant18-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,84:154:99:2064,0,1607:41,29,48,36
chr1	180793864	.	G	A	671.92	PASS	AC=1;AF=0.5;AN=2;DP=155;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:597,0,1152:15,3,12,3
chr1	180793873	.	C	A	720.85	PASS	AC=1;AF=0.5;AN=2;DP=192;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:657,0,1208:16,4,13,6
chr1	180803992	.	A	AT	581.66	PASS	AC=1;AF=0.5;AN=2;DP=249;MQ=60;set=variant8-variant18-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:584,0,441:14,7,17,9
chr1	180804033	.	C	T	1063.58	PASS	AC=1;AF=0.5;AN=2;DP=441;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,39:92:99:906,0,1322:34,19,22,17
chr1	180832789	.	A	T	487.99	PASS	AC=1;AF=0.5;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:430,0,322:9,3,11,3
chr1	180833087	.	C	T	435.56	PASS	AC=1;AF=0.6;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:358,0,172:1,5,1,9
chr1	180842822	.	G	A	198.67	PASS	AC=1;AF=0.5;AN=2;DP=52;FractionInformativeReads=1;MQ=60;set=variant18-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:142,0,235:5,1,4,0
chr1	180842856	.	G	T	366.11	PASS	AC=1;AF=0.5;AN=2;DP=146;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:378,0,432:11,1,10,3
chr1	180849081	.	A	G	97.34	PASS	AC=1;AF=0.545;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant11-variant18-variant22-variant30-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:63:63,0,238:6,0,2,0
chr1	180849140	.	A	C	587.35	PASS	AC=1;AF=0.5;AN=2;DP=214;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:475,0,469:13,7,12,3
chr1	180849494	.	T	C	229.3	PASS	AC=2;AF=0.667;AN=2;DP=761;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:754,54,0:0,0,2,16
chr1	180853055	.	G	T	464.5	PASS	AC=1;AF=0.5;AN=2;DP=135;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:419,0,616:16,3,12,4
chr1	180853283	.	T	C	3023.59	PASS	AC=1;AF=0.5;AN=2;DP=252;FS=0.965;FractionInformativeReads=0.996;MQ=60;MQRankSum=0.168;QD=12;ReadPosRankSum=-0.94;SOR=0.778;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:128,123:251:99:3052,0,3207:63,65,58,65
chr1	180853568	.	C	T	2225.77	PASS	AC=1;AF=0.5;AN=2;DP=718;MQ=60;set=variant8-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:91,74:165:99:1892,0,2388:35,56,27,47
chr1	180854067	.	A	G	9496.59	PASS	AC=2;AF=1;AN=2;DP=10414;FS=0;MQ=60;MQRankSum=1.677;ReadPosRankSum=1.654;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,240:240:99:7338,718,0:0,0,132,108
chr1	180854773	.	A	G	2642.45	PASS	AC=1;AF=0.5;AN=2;DP=649;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:97,71:168:99:2646,0,5899:40,57,38,33
chr1	180854783	.	T	C	2626.2	PASS	AC=1;AF=0.5;AN=2;DP=649;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:95,71:166:99:2678,0,5886:38,57,39,32
chr1	180855503	.	A	G	6260.72	PASS	AC=1;AF=0.638;AN=2;DP=14435;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:156,165:321:99:4505,0,4065:90,66,92,73
chr1	180855636	.	G	A	6390.49	PASS	AC=1;AF=0.5;AN=2;DP=2054;MQ=60;set=variant8-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:253,193:446:99:4970,0,6624:127,126,101,92
chr1	180856904	.	G	A	1670.71	PASS	AC=1;AF=0.5;AN=2;DP=374;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,56:102:99:1765,0,1535:22,24,30,26
chr1	180857122	.	G	A	1033.1	PASS	AC=1;AF=0.5;AN=2;DP=555;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,67:131:99:1582,0,1790:23,41,28,39
chr1	180857153	.	A	G	869.93	PASS	AC=1;AF=0.5;AN=2;DP=364;FractionInformativeReads=1;MQ=60;set=variant8-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,46:102:99:1266,0,1656:16,40,16,30
chr1	180858884	.	G	T	1032.65	PASS	AC=1;AF=0.5;AN=2;DP=502;MQ=60;set=variant8-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:79,55:134:99:1352,0,1963:34,45,20,35
chr1	180859368	.	T	G	4721.09	PASS	AC=1;AF=0.521;AN=2;DP=10512;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant29-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:194,165:359:99:4048,0,4754:91,103,67,98
chr1	180885430	.	T	C	3432.92	PASS	AC=2;AF=0.989;AN=2;DP=7598;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5630,525,0:0,0,89,86
chr1	180885874	.	C	T	3059.87	PASS	AC=1;AF=0.5;AN=2;DP=245;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.218;QD=12.49;ReadPosRankSum=1.939;SOR=0.678;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:123,122:245:99:3088,0,2943:65,58,64,58
chr1	180897521	.	C	T	1914.6	PASS	AC=2;AF=1;AN=2;DP=4086;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2541,246,0:0,0,47,35
chr1	180897792	.	ATGC	A	397.77	PASS	AC=2;AF=0.679;AN=2;DP=1194;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:71:1024,71,0:0,0,8,16
chr1	180905694	.	C	T	7409.32	PASS	AC=2;AF=0.568;AN=2;DP=4714;MQ=60;set=variant3-variant4-variant7-variant8-variant12-variant14-variant15-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:5924,594,0:0,0,79,121
chr1	180913597	.	A	G	1553.13	PASS	AC=2;AF=1;AN=2;DP=6204;FS=0;MQ=60;MQRankSum=-0.019;ReadPosRankSum=1.546;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4136,396,0:0,0,65,67
chr1	180914304	.	C	T	489.01	PASS	AC=2;AF=1;AN=2;DP=1001;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:798,75,0:0,0,16,9
chr1	180915244	.	GA	G	545.13	PASS	AC=2;AF=0.932;AN=2;DP=1010;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:462,51,0:0,0,11,6
chr1	180915596	.	T	C	715.73	PASS	AC=1;AF=0.703;AN=2;DP=1830;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:629,0,643:10,11,12,5
chr1	180915977	.	C	G,T	3457.5	PASS	AC=0,1;AF=0.065,0.478;AN=2;DP=4803;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant31-variant32-variant36-variant37-variant38-variant41-variant43	GT:DP:GQ:SB	0/2:217:99:58,45,67,47
chr1	180916130	.	G	T	3555.36	PASS	AC=2;AF=0.583;AN=2;DP=2853;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant26-variant31-variant32-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4290,380,0:0,0,43,85
chr1	180916595	.	T	TGGGGAGA	376.63	PASS	AC=1;AF=0.5;AN=2;DP=210;MQ=60;set=variant26-variant30-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:683,0,1914:12,12,9,9
chr1	180917014	.	G	A	813.87	PASS	AC=1;AF=0.5;AN=2;DP=238;FractionInformativeReads=1;MQ=60;set=variant26-variant30-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:535,0,681:14,14,11,11
chr1	180917275	.	A	G	3442.05	PASS	AC=2;AF=0.58;AN=2;DP=1994;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2443,234,0:0,0,41,37
chr1	180917342	.	G	A	706.94	PASS	AC=1;AF=0.5;AN=2;DP=818;MQ=60;set=variant7-variant10-variant16-variant18-variant22-variant30-variant33-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,36:78:99:882,0,1189:18,24,18,18
chr1	180918071	.	C	T	769.64	PASS	AC=1;AF=0.5;AN=2;DP=179;MQ=60;set=variant26-variant30-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,29:42:99:807,0,307:4,9,15,14
chr1	180918145	.	G	A	302.13	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,16:45:99:330,0,858:15,14,9,7
chr1	180918340	.	C	G	2831.05	PASS	AC=2;AF=1;AN=2;DP=4887;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3541,342,0:0,0,53,61
chr1	180918365	.	C	T	1274.42	PASS	AC=1;AF=0.556;AN=2;DP=1930;MQ=60;set=variant-variant2-variant5-variant8-variant10-variant11-variant12-variant17-variant23-variant24-variant25-variant31-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,59:103:99:1571,0,1140:27,17,23,36
chr1	180918390	.	T	G	1257.42	PASS	AC=1;AF=0.5;AN=2;DP=300;MQ=60;set=variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,40:86:99:1034,0,1231:19,27,23,17
chr1	180919151	.	T	C	7149.94	PASS	AC=2;AF=0.629;AN=2;DP=5217;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4737,450,0:0,0,81,69
chr1	180920026	.	T	C	2185.49	PASS	AC=2;AF=0.795;AN=2;DP=3191;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2458,240,0:0,0,44,36
chr1	180920177	.	A	G	3652.56	PASS	AC=2;AF=0.795;AN=2;DP=4428;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:4233,289,0:0,0,43,52
chr1	180920181	.	C	T	3722.41	PASS	AC=2;AF=0.643;AN=2;DP=2612;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:4173,283,0:0,0,42,52
chr1	180933498	.	C	T	1404.53	PASS	AC=2;AF=0.737;AN=2;DP=1810;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1954,165,0:0,0,40,15
chr1	180941906	.	A	G	700.02	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=1.154;FractionInformativeReads=1;MQ=60;MQRankSum=-1.128;QD=15.91;ReadPosRankSum=1.88;SOR=0.512;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:728,0,763:8,13,10,13
chr1	180943529	.	C	T	7448.33	PASS	AC=1;AF=0.763;AN=2;DP=7325;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,77:172:99:2014,0,2361:52,43,45,32
chr1	180944532	.	T	TAA	13783.8	PASS	AC=1;AF=0.756;AN=2;DP=10890;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,126:260:99:4653,0,5168:66,68,61,65
chr1	180953853	.	A	G	4226.74	PASS	AC=1;AF=0.763;AN=2;DP=4922;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,72:131:99:1912,0,1374:30,29,35,37
chr1	180957130	.	C	A	374.75	PASS	AC=2;AF=0.878;AN=2;DP=292;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:155,12,0:0,0,3,1
chr1	180957757	.	A	G	276.66	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.212;QD=17.29;ReadPosRankSum=0.529;SOR=0.976;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:305,0,226:1,6,1,8
chr1	180962282	.	A	G	601.88	PASS	AC=1;AF=0.763;AN=2;DP=550;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,2:10:61:61,0,264:8,0,2,0
chr1	180991665	.	C	G	2984.01	PASS	AC=1;AF=0.636;AN=2;DP=3690;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,56:106:99:1359,0,1089:30,20,34,22
chr1	180991985	.	G	A	435.22	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.216;QD=16.74;ReadPosRankSum=2.318;SOR=0.929;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,17:26:99:463,0,275:3,6,5,12
chr1	181003340	.	A	AG	1025.85	PASS	AC=1;AF=0.553;AN=2;DP=1514;MQ=60;set=variant2-variant3-variant4-variant5-variant12-variant13-variant14-variant15-variant21-variant23-variant26-variant28-variant30-variant32-variant33-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,25:60:99:754,0,1130:18,17,10,15
chr1	181018096	.	T	C	1601.65	PASS	AC=1;AF=0.5;AN=2;DP=1541;set=variant3-variant5-variant9-variant12-variant14-variant16-variant22-variant26-variant28-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,52:116:99:1156,0,1723:40,24,32,20
chr1	181018180	.	C	G	2719.35	PASS	AC=1;AF=0.5;AN=2;DP=1185;set=variant18-variant20-variant26-variant30-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:96,65:161:99:1467,0,2296:48,48,30,35
chr1	181022517	.	CAA	CA,C,CAAA	377.49	PASS	AC=1,0,0;AF=0.521,0.021,0.021;AN=2;DP=537;set=variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant31-variant32-variant33-filterInvariant35-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:22:99:13,2,7,0
chr1	181022895	.	C	A	372.67	PASS	AC=1;AF=0.625;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant33-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:153,0,193:1,4,1,3
chr1	181024404	.	G	A	4817.1	PASS	AC=1;AF=0.619;AN=2;DP=2748;MQ=60;set=variant3-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant29-variant33-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,47:111:99:1289,0,1737:36,28,28,19
chr1	181024465	.	G	C	1050.58	PASS	AC=1;AF=0.5;AN=2;DP=123;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.808;QD=8.54;ReadPosRankSum=0.189;SOR=0.754;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:75,48:123:99:1079,0,1982:41,34,27,21
chr1	181026031	.	G	A	235.49	PASS	AC=1;AF=0.5;AN=2;DP=60;FractionInformativeReads=1;MQ=60;set=variant20-variant26-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:234,0,180:0,5,0,7
chr1	181026256	.	CA	C	309.19	PASS	AC=2;AF=0.75;AN=2;DP=409;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:169,18,0:0,0,4,2
chr1	181026558	.	G	A	6266.42	PASS	AC=2;AF=0.73;AN=2;DP=6471;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3870,382,0:0,0,54,74
chr1	181026704	.	C	T	2210.2	PASS	AC=2;AF=0.743;AN=2;DP=1834;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1515,153,0:0,0,21,30
chr1	181027086	.	T	C	106.77	PASS	AC=2;AF=0.857;AN=2;DP=178;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant28-variant33-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:136,12,0:0,0,3,1
chr1	181027169	.	T	C	341.77	PASS	AC=1;AF=0.5;AN=2;DP=145;FractionInformativeReads=1;MQ=60;set=variant20-variant26-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:595,0,635:17,4,16,4
chr1	181027327	.	T	A	7184.13	PASS	AC=2;AF=0.757;AN=2;DP=8611;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,232:232:99:6651,694,0:0,0,114,118
chr1	181027559	.	G	A	6726.61	PASS	AC=1;AF=0.577;AN=2;DP=2098;MQ=60;set=variant3-variant5-variant12-variant14-variant15-variant17-variant18-variant21-variant25-variant28-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,54:113:99:1363,0,1520:29,30,25,29
chr1	181027841	.	A	G	1855.69	PASS	AC=2;AF=0.75;AN=2;DP=2319;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2199,210,0:0,0,34,36
chr1	181027925	.	G	T	724.04	PASS	AC=1;AF=0.5;AN=2;DP=223;FractionInformativeReads=1;MQ=60;set=variant20-variant26-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:659,0,626:11,10,9,14
chr1	181028123	.	A	G	483.62	PASS	AC=1;AF=0.5;AN=2;DP=196;FractionInformativeReads=1;MQ=60;set=variant20-variant26-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,14:39:99:391,0,729:16,9,6,8
chr1	181028733	.	T	C	4309.65	PASS	AC=2;AF=0.75;AN=2;DP=3588;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:4169,324,0:0,0,62,46
chr1	181029053	.	C	T	1922.11	PASS	AC=2;AF=0.75;AN=2;DP=2001;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:3237,255,0:0,0,17,68
chr1	181029805	.	C	T	418.58	PASS	AC=1;AF=0.615;AN=2;DP=217;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant12-variant14-variant15-variant17-variant18-variant21-variant25-variant28-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:137,0,240:3,5,1,4
chr1	181029857	.	A	G	50.67	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;set=variant20-variant26-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:73:73,0,118:1,3,1,2
chr1	181030115	.	C	T	134.73	PASS	AC=2;AF=0.757;AN=2;DP=516;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:867,84,0:0,0,15,13
chr1	181030499	.	A	G	1390.84	PASS	AC=2;AF=0.75;AN=2;DP=1607;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1905,155,0:0,0,43,9
chr1	181031172	.	T	C	1564.68	PASS	AC=2;AF=0.75;AN=2;DP=1326;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1399,105,0:0,0,2,33
chr1	181057874	.	T	G	7639.5	PASS	AC=2;AF=0.744;AN=2;DP=9609;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,236:236:99:7091,707,0:0,0,121,115
chr1	181057928	.	T	A	2258.78	PASS	AC=1;AF=0.5;AN=2;DP=194;FS=1.761;FractionInformativeReads=1;MQ=60;MQRankSum=-2.451;QD=11.64;ReadPosRankSum=-1.799;SOR=0.627;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:98,96:194:99:2287,0,2285:46,52,49,47
chr1	181058643	.	A	G	1336.9	PASS	AC=2;AF=0.989;AN=2;DP=1389;FractionInformativeReads=1;MQ=60;MQRankSum=0;ReadPosRankSum=1.448;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:850,69,0:0,0,12,11
chr1	181059645	.	T	A	883.95	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=2.072;FractionInformativeReads=1;MQ=60;MQRankSum=-0.828;QD=13;ReadPosRankSum=1.87;SOR=0.405;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:912,0,979:22,12,19,15
chr1	181144597	.	C	G	331.12	PASS	AC=1;AF=0.548;AN=2;DP=538;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant20-variant21-variant23-variant25-variant27-variant28-variant33-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,16:20:99:451,0,112:1,3,6,10
chr1	181452643	.	T	TTC	487.82	PASS	AC=1;AF=0.5;AN=2;DP=56;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:510,0,438:8,4,12,1
chr1	181684605	.	A	G	731.08	PASS	AC=1;AF=0.814;AN=2;DP=3113;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,34:66:99:848,0,776:12,20,12,22
chr1	181685433	.	A	T	80.43	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:109,0,99:2,4,2,4
chr1	181688868	.	G	A	721.02	PASS	AC=1;AF=0.5;AN=2;DP=263;FractionInformativeReads=1;MQ=60;set=variant4-variant24-variant27-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,6:20:99:132,0,354:10,4,5,1
chr1	181701799	.	T	A	2841.25	PASS	AC=1;AF=0.5;AN=2;DP=1085;MQ=60;set=variant4-variant24-variant27-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,66:148:99:1759,0,2218:38,44,30,36
chr1	181702616	.	G	A	2286.2	PASS	AC=1;AF=0.5;AN=2;DP=793;FractionInformativeReads=1;MQ=60;set=variant24-variant27-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:92,96:188:99:2467,0,2365:50,42,53,43
chr1	181706685	.	C	T	907.5	PASS	AC=1;AF=0.563;AN=2;DP=609;FractionInformativeReads=1;MQ=60;set=variant4-variant13-variant18-variant24-variant27-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,38:75:99:970,0,938:23,14,24,14
chr1	181708168	.	A	G	514.47	PASS	AC=1;AF=0.556;AN=2;DP=325;FractionInformativeReads=1;MQ=60;set=variant4-variant13-variant18-variant24-variant27-variant31-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:763,0,604:17,3,19,5
chr1	181725110	.	T	C	842.15	PASS	AC=1;AF=0.521;AN=2;DP=2226;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,39:69:99:1053,0,701:18,12,20,19
chr1	181726413	.	G	A	246.92	PASS	AC=1;AF=0.814;AN=2;DP=1059;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,11:33:99:294,0,682:5,17,1,10
chr1	181727030	.	A	T	1796.69	PASS	AC=1;AF=0.5;AN=2;DP=4029;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant14-variant15-variant17-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:96,84:180:99:2121,0,2318:48,48,41,43
chr1	181731667	.	T	TC	790.99	PASS	AC=1;AF=0.5;AN=2;DP=1524;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant14-variant15-variant17-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,29:63:99:838,0,1065:25,9,17,12
chr1	181732695	.	A	G	324.16	PASS	AC=1;AF=0.5;AN=2;DP=1468;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant14-variant15-variant17-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,13:42:99:301,0,796:15,14,4,9
chr1	181741301	.	C	T	1562.65	PASS	AC=1;AF=0.523;AN=2;DP=4061;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant14-variant15-variant17-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:90,87:177:99:2168,0,2188:48,42,47,40
chr1	181745580	.	G	A	621.75	PASS	AC=1;AF=0.523;AN=2;DP=1561;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant14-variant15-variant17-variant24-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:661,0,1046:16,23,11,16
chr1	181752783	.	T	TG,TTG	498.01	PASS	AC=1,0;AF=0.5,0.045;AN=2;DP=709;MQ=60;set=variant9-variant15-variant18-variant24-variant27-variant34-variant35-variant36-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:46:99:23,6,9,8
chr1	181752923	.	AAGCTT	A	1318.59	PASS	AC=1;AF=0.775;AN=2;DP=3596;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,47:96:99:1807,0,3053:19,30,18,29
chr1	181754314	.	G	C	90.96	PASS	AC=1;AF=0.545;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant18-variant24-variant27-variant34-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:215,0,203:6,1,6,0
chr1	181754803	.	C	T	1798.79	PASS	AC=1;AF=0.545;AN=2;DP=1652;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant18-variant24-variant27-variant34-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,70:132:99:1593,0,1682:40,22,41,29
chr1	181759473	.	T	A	719.62	PASS	AC=1;AF=0.545;AN=2;DP=519;MQ=60;set=variant9-variant15-variant18-variant24-variant27-variant34-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:457,0,637:15,5,12,3
chr1	181768947	.	C	CAG	703.27	PASS	AC=2;AF=0.782;AN=2;DP=1818;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1838,123,0:0,0,26,15
chr1	181768985	.	G	A	827.97	PASS	AC=2;AF=0.763;AN=2;DP=2163;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2004,174,0:0,0,40,18
chr1	181770735	.	G	T	1404.74	PASS	AC=2;AF=0.667;AN=2;DP=584;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant13-variant14-variant18-variant23-variant24-variant25-variant27-variant29-variant33-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1167,111,0:0,0,20,17
chr1	181771834	.	A	C	988.84	PASS	AC=2;AF=0.75;AN=2;DP=3750;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2485,245,0:0,0,38,44
chr1	181774018	.	A	G	1372.62	PASS	AC=1;AF=0.5;AN=2;DP=1223;MQ=60;set=variant2-variant11-variant13-variant18-variant23-variant24-variant27-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,43:105:99:1153,0,1867:27,35,19,24
chr1	181774271	.	C	G	1589.77	PASS	AC=2;AF=0.706;AN=2;DP=3255;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3312,264,0:0,0,40,48
chr1	181774370	.	A	C	2669.3	PASS	AC=2;AF=0.8;AN=2;DP=5739;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:4102,352,0:0,0,78,40
chr1	181775052	.	C	A	64.62	PASS	AC=2;AF=0.8;AN=2;DP=1529;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1454,144,0:0,0,25,23
chr1	181776078	.	A	AG	1234.07	PASS	AC=2;AF=1;AN=2;DP=1699;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1777,144,0:0,0,14,34
chr1	181776264	.	TA	TAA,T,TAAA	191.68	PASS	AC=1,0,0;AF=0.485,0.03,0.03;AN=2;DP=1897;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-filterInvariant16-variant18-variant21-variant22-filterInvariant23-variant25-variant26-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-filterInvariant44	GT:DP:GQ:SB	0/1:42:99:12,11,14,5
chr1	182350896	.	C	G	3103.69	PASS	AC=2;AF=0.794;AN=2;DP=5183;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:5076,458,0:0,0,107,46
chr1	182350909	.	C	T	3434.27	PASS	AC=1;AF=0.6;AN=2;DP=3581;MQ=60;set=variant-variant9-variant10-variant12-variant15-variant16-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant30-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:92,93:185:99:2565,0,2497:62,30,69,24
chr1	182351233	.	G	A	4006.98	PASS	AC=2;AF=0.794;AN=2;DP=9429;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,250:250:99:7907,749,0:0,0,113,137
chr1	182351422	.	A	G	1649.51	PASS	AC=2;AF=1;AN=2;DP=3080;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2433,207,0:0,0,34,35
chr1	182351627	.	T	A	4271.33	PASS	AC=2;AF=0.909;AN=2;DP=4338;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:4046,271,0:0,0,49,40
chr1	182351630	.	T	TAAATGA	4566.23	PASS	AC=2;AF=0.92;AN=2;DP=4415;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:4260,285,0:0,0,51,40
chr1	182352069	.	TAC	T	3526.64	PASS	AC=1;AF=0.5;AN=2;DP=216;FS=0.516;FractionInformativeReads=0.949;MQ=60;MQRankSum=-1.868;QD=16.33;ReadPosRankSum=1.147;SOR=0.648;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:111,94:205:99:3564,0,4280:46,65,40,54
chr1	182352621	.	T	C	817.14	PASS	AC=2;AF=0.794;AN=2;DP=2374;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1558,150,0:0,0,27,23
chr1	182353198	.	A	T	95.61	PASS	AC=2;AF=0.794;AN=2;DP=1297;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:74:786,74,0:0,0,10,15
chr1	182354850	.	A	G	330.57	PASS	AC=2;AF=0.794;AN=2;DP=1017;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:923,66,0:0,0,9,13
chr1	182355046	.	A	G	823.87	PASS	AC=2;AF=0.794;AN=2;DP=4951;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3892,383,0:0,0,67,61
chr1	182356399	.	A	G	1466.96	PASS	AC=2;AF=0.794;AN=2;DP=3389;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3281,307,0:0,0,47,56
chr1	182359578	.	A	C	95.31	PASS	AC=2;AF=0.8;AN=2;DP=530;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:945,84,0:0,0,22,6
chr1	182360169	.	T	G	543.31	PASS	AC=2;AF=0.794;AN=2;DP=1509;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1206,114,0:0,0,23,15
chr1	182360202	.	A	C	861.93	PASS	AC=2;AF=0.794;AN=2;DP=1935;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1669,156,0:0,0,31,21
chr1	182360223	.	G	T	868.51	PASS	AC=2;AF=0.794;AN=2;DP=2377;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:1945,204,0:0,0,41,28
chr1	182360315	.	C	T	1359.08	PASS	AC=1;AF=0.6;AN=2;DP=2979;MQ=60;set=variant-variant9-variant10-variant12-variant15-variant16-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant30-variant33-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,66:120:99:1567,0,1337:31,23,35,31
chr1	182360632	.	A	G	4027.68	PASS	AC=2;AF=0.898;AN=2;DP=5809;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,115:116:99:3591,337,0:1,0,54,61
chr1	182360843	.	C	G	1628.32	PASS	AC=2;AF=0.92;AN=2;DP=2974;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2080,191,0:0,0,25,39
chr1	182360930	.	A	G	1324.68	PASS	AC=2;AF=0.92;AN=2;DP=2114;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1311,120,0:0,0,14,26
chr1	182361478	.	T	C	485.57	PASS	AC=2;AF=0.902;AN=2;DP=370;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:243,27,0:0,0,4,5
chr1	182367548	.	G	A	1928.73	PASS	AC=2;AF=0.794;AN=2;DP=4630;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,129:130:99:4092,351,0:1,0,47,82
chr1	182367643	.	A	G	634.2	PASS	AC=2;AF=0.794;AN=2;DP=1565;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2254,177,0:0,0,31,28
chr1	182367893	.	A	G	2267.5	PASS	AC=2;AF=0.794;AN=2;DP=7196;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,202:202:99:6088,606,0:0,0,88,114
chr1	182369078	.	G	A	3157.46	PASS	AC=2;AF=0.909;AN=2;DP=6398;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5557,500,0:0,0,97,70
chr1	182369233	.	A	G	2847.08	PASS	AC=2;AF=0.794;AN=2;DP=9525;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,246:246:99:7823,738,0:0,0,120,126
chr1	182369738	.	G	A	489.03	PASS	AC=2;AF=0.909;AN=2;DP=1240;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:637,57,0:0,0,6,13
chr1	182423235	.	A	C	1135.8	PASS	AC=1;AF=0.5;AN=2;DP=117;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,42:65:99:1164,0,533:8,15,15,27
chr1	182423299	.	T	TA	295.52	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=0;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:333,0,181:2,6,3,10
chr1	182429728	.	T	C	694.02	PASS	AC=1;AF=0.692;AN=2;DP=2103;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,32:72:99:760,0,971:26,14,21,11
chr1	182441932	.	C	G	388.32	PASS	AC=1;AF=0.5;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant13-variant19-variant25-variant34-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:83:406,0,83:0,3,2,10
chr1	182443462	.	T	C	1397.59	PASS	AC=2;AF=0.685;AN=2;DP=2713;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant18-variant19-variant20-variant22-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3911,354,0:0,0,59,59
chr1	182491107	.	A	C	1107.38	PASS	AC=2;AF=0.886;AN=2;DP=1261;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1068,87,0:0,0,24,5
chr1	182491111	.	T	C	455.45	PASS	AC=1;AF=0.563;AN=2;DP=426;MQ=60;set=variant5-variant10-variant12-variant18-variant22-variant28-variant29-variant30-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,10:31:99:354,0,604:15,6,10,0
chr1	182496829	.	A	G	1146.38	PASS	AC=1;AF=0.615;AN=2;DP=2691;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,44:100:99:964,0,1416:21,35,17,27
chr1	182501933	.	C	A	5592.27	PASS	AC=1;AF=0.736;AN=2;DP=6474;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,81:165:99:1854,0,2056:41,43,40,41
chr1	182502033	.	G	T	3237.63	PASS	AC=2;AF=0.86;AN=2;DP=3704;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2275,228,0:0,0,25,52
chr1	182509269	.	G	A	1588.09	PASS	AC=2;AF=0.875;AN=2;DP=1728;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1038,84,0:0,0,22,6
chr1	182509292	.	A	G	652.15	PASS	AC=1;AF=0.643;AN=2;DP=2033;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,23:35:99:704,0,307:8,4,16,7
chr1	182509617	.	C	A	192.1	PASS	AC=1;AF=0.643;AN=2;DP=729;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:233,0,472:2,11,1,7
chr1	182517238	.	C	A	103.54	PASS	AC=1;AF=0.68;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:145,0,233:6,1,3,2
chr1	182517357	.	G	C	376.07	PASS	AC=1;AF=0.643;AN=2;DP=1186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:527,0,577:14,7,14,6
chr1	182517642	.	C	A	742.68	PASS	AC=1;AF=0.6;AN=2;DP=1162;MQ=60;set=variant5-variant6-variant10-variant11-variant12-variant13-variant18-variant22-variant28-variant29-variant30-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,36:75:99:789,0,970:16,23,15,21
chr1	182522552	.	C	T	1380.22	PASS	AC=1;AF=0.583;AN=2;DP=1818;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant11-variant12-variant15-variant17-variant19-variant22-variant26-variant27-variant28-variant29-variant30-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,30:70:99:873,0,1112:24,16,22,8
chr1	182522952	.	A	G	115.81	PASS	AC=2;AF=0.607;AN=2;DP=83;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant12-variant22-variant28-variant29-variant30-variant33-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:245,24,0:0,0,2,6
chr1	182542826	.	G	A	9463.11	PASS	AC=1;AF=0.989;AN=2;DP=9411;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:109,107:216:99:4054,0,5700:60,49,62,45
chr1	182542851	.	G	C	3114.44	PASS	AC=1;AF=0.614;AN=2;DP=4875;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant18-variant19-variant24-variant28-variant29-variant30-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,112:234:99:4229,0,6093:64,58,64,48
chr1	182543175	.	G	A	7371.26	PASS	AC=1;AF=0.989;AN=2;DP=8740;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:110,84:194:99:2271,0,3131:38,72,28,56
chr1	182543331	.	A	G	2055.66	PASS	AC=1;AF=0.6;AN=2;DP=3269;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant18-variant19-variant22-variant24-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,74:144:99:1672,0,1773:35,35,39,35
chr1	182543666	.	T	G	818.35	PASS	AC=1;AF=0.6;AN=2;DP=1299;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant18-variant19-variant22-variant24-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:468,0,535:11,13,11,8
chr1	182543937	.	T	C	719.13	PASS	AC=1;AF=0.6;AN=2;DP=976;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant18-variant19-variant22-variant24-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,8:27:99:198,0,479:8,11,3,5
chr1	182544815	.	T	C	1151.44	PASS	AC=1;AF=0.596;AN=2;DP=1000;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant18-variant19-variant22-variant24-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:587,0,656:9,16,8,16
chr1	182549019	.	A	G	2285.32	PASS	AC=2;AF=0.886;AN=2;DP=6930;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4528,447,0:0,0,75,74
chr1	182558398	.	T	C	1050.25	PASS	AC=2;AF=1;AN=2;DP=1323;FS=0;MQ=60;MQRankSum=0.545;ReadPosRankSum=-0.149;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:748,63,0:0,0,7,14
chr1	182568204	.	G	C	716.98	PASS	AC=2;AF=0.943;AN=2;DP=2044;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1680,147,0:0,0,35,14
chr1	182568729	.	C	G	749.06	PASS	AC=2;AF=0.736;AN=2;DP=2064;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1503,144,0:0,0,25,23
chr1	182569501	.	C	A	624.28	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=1.908;FractionInformativeReads=1;MQ=60;MQRankSum=0.569;QD=6.86;ReadPosRankSum=-1.308;SOR=0.973;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,27:91:99:653,0,1645:36,28,17,10
chr1	182569626	.	T	C	486.88	PASS	AC=2;AF=0.955;AN=2;DP=4087;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3301,341,0:0,0,52,62
chr1	182571003	.	C	T	295.55	PASS	AC=2;AF=0.743;AN=2;DP=682;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:541,42,0:0,0,11,3
chr1	182571277	.	C	T	999.16	PASS	AC=1;AF=0.66;AN=2;DP=2622;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant22-variant25-variant26-variant28-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,53:104:99:1475,0,1302:23,28,20,33
chr1	182573227	.	T	C	1970.84	PASS	AC=2;AF=0.955;AN=2;DP=6551;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4464,432,0:0,0,85,59
chr1	182772804	.	A	C	487.23	PASS	AC=1;AF=0.5;AN=2;DP=568;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant13-variant17-variant26-variant27-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:770,0,614:17,6,19,8
chr1	182778367	.	G	A	2340.89	PASS	AC=2;AF=0.989;AN=2;DP=3089;FractionInformativeReads=1;MQRankSum=1.175;ReadPosRankSum=-0.914;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2202,225,0:0,0,31,44
chr1	182784022	.	T	C	1376.18	PASS	AC=1;AF=0.652;AN=2;DP=3429;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,62:111:99:1649,0,1231:16,33,24,38
chr1	182794901	.	G	GT	594.8	PASS	AC=1;AF=0.5;AN=2;DP=732;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant13-variant17-variant26-variant27-variant29-variant30-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:732,0,741:15,10,15,10
chr1	182798081	.	T	C	3096.26	PASS	AC=1;AF=0.5;AN=2;DP=2169;MQ=60;set=variant11-variant17-variant26-variant29-variant30-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,122:262:99:3199,0,3518:82,58,67,55
chr1	182798924	.	G	T	956.62	PASS	AC=1;AF=0.5;AN=2;DP=1254;MQ=60;set=variant9-variant11-variant13-variant17-variant26-variant27-variant29-variant30-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,45:91:99:1288,0,1284:23,23,24,21
chr1	182808646	.	C	G	1339.72	PASS	AC=1;AF=0.966;AN=2;DP=2202;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,27:53:99:716,0,719:8,18,12,15
chr1	182812584	.	C	T	1222.68	PASS	AC=1;AF=0.5;AN=2;DP=1071;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant13-variant17-variant26-variant27-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:948,0,908:18,22,20,18
chr1	182822367	.	A	G	111.91	PASS	AC=1;AF=0.5;AN=2;DP=51;FractionInformativeReads=1;MQ=60;set=variant11-variant17-variant26-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:135,0,328:8,3,4,0
chr1	182825748	.	C	T	938.09	PASS	AC=1;AF=0.5;AN=2;DP=545;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant13-variant17-variant26-variant27-variant29-variant30-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:500,0,651:7,15,4,13
chr1	182844020	.	C	T	369.86	PASS	AC=1;AF=0.542;AN=2;DP=329;FractionInformativeReads=1;set=variant9-variant11-variant13-variant17-variant26-variant27-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:458,0,339:8,5,9,6
chr1	182846206	.	A	AT	115.62	PASS	AC=1;AF=0.545;AN=2;DP=90;MQ=60;set=variant9-variant11-variant17-variant26-variant27-variant29-variant30-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:213,0,110:1,3,0,7
chr1	182847207	.	C	T	3311.04	PASS	AC=1;AF=0.5;AN=2;DP=260;FS=0.452;FractionInformativeReads=0.996;MQ=60;MQRankSum=3.193;QD=12.73;ReadPosRankSum=-0.926;SOR=0.659;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:123,136:259:99:3339,0,2880:68,55,74,62
chr1	182848710	.	A	G	453.45	PASS	AC=1;AF=0.5;AN=2;DP=205;FractionInformativeReads=1;MQ=60;set=variant11-variant17-variant26-variant29-variant30-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:521,0,442:0,12,6,12
chr1	182849834	.	CA	C	690.39	PASS	AC=1;AF=0.5;AN=2;DP=400;MQ=60;set=variant11-variant17-variant26-variant29-variant30-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,30:48:99:715,0,364:7,11,13,17
chr1	182850727	.	T	C	2730.61	PASS	AC=1;AF=0.977;AN=2;DP=2973;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:904,0,894:18,17,16,20
chr1	182852978	.	GA	G	904.29	PASS	AC=1;AF=0.5;AN=2;DP=779;MQ=60;set=variant9-variant11-variant13-variant17-variant26-variant27-variant29-variant30-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,27:63:99:1022,0,2358:20,16,12,15
chr1	182852981	.	TC	T	904.32	PASS	AC=1;AF=0.5;AN=2;DP=775;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant13-variant17-variant26-variant27-variant29-variant30-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,27:64:99:1022,0,2358:20,17,12,15
chr1	182854017	.	G	A	402.69	PASS	AC=2;AF=0.768;AN=2;DP=1570;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,52:53:99:1772,148,0:1,0,12,40
chr1	182856842	.	T	C	2742.06	PASS	AC=1;AF=0.5;AN=2;DP=239;FS=2.853;FractionInformativeReads=1;MQ=60;MQRankSum=0.269;QD=11.47;ReadPosRankSum=-0.31;SOR=0.763;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:122,117:239:99:2770,0,2921:59,63,62,55
chr1	182872410	.	G	A	538.52	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:438,0,298:2,7,2,11
chr1	182922215	.	G	T	1416.86	PASS	AC=1;AF=0.5;AN=2;DP=858;MQ=60;set=variant17-variant26-variant29-variant30-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,51:119:99:1246,0,1655:37,31,27,24
chr1	182922555	.	T	G	63.12	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=378;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:34,10:44:66:66,0,603:23,11,0,10
chr1	182922647	.	A	C	136.06	PASS	AC=1;AF=0.5;AN=2;DP=246;MQ=60;set=variant9-variant13-variant17-variant26-variant27-variant29-variant30-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,4:20:88:88,0,389:6,10,0,4
chr1	183100563	.	GGT	GTGTGTGTGT,GGTGT,GTGTGTGTGTGTGT,GTGTGTGTGTGT,GTGTGTGTGTGTGTGT,GTGTGTGT,GTGTGTGTGTGTGTGTGTGT,GTGTGTGTGTGTGTGTGT,GGTGTGT,G	649.43	PASS	AC=0,0,0,0,0,0,0,0,1,0;AF=0.053,0.197,0.224,0.092,0.092,0.039,0.013,0.026,0.026,0.013;AN=2;DP=1674;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant7-variant10-variant11-variant12-variant13-variant16-variant14-variant18-variant19-variant15-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant17-variant37-variant38-variant20-variant40-variant41-variant23-variant42-variant43-variant44	GT:DP:GQ:SB	0/9:16:99:3,7,0,6
chr1	183104311	.	CAG	C	2688.72	PASS	AC=1;AF=0.5;AN=2;DP=144;FS=2.143;FractionInformativeReads=0.972;MQ=60;MQRankSum=-0.025;QD=18.67;ReadPosRankSum=0.225;SOR=0.936;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:69,71:140:99:2726,0,2768:33,36,30,41
chr1	183155715	.	CT	C	2077.74	PASS	AC=1;AF=0.672;AN=2;DP=3526;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant31-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,56:136:99:2079,0,3624:28,52,20,36
chr1	183155717	.	C	A	2086.73	PASS	AC=1;AF=0.672;AN=2;DP=3480;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant31-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,56:136:99:2079,0,3624:28,52,20,36
chr1	183155778	.	A	C	377.97	PASS	AC=1;AF=0.672;AN=2;DP=1017;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant31-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:414,0,672:4,16,1,12
chr1	183176970	.	GT	G,GTTT,GTT,GTTTT,GTTTTT	229.72	PASS	AC=0,0,1,0,0;AF=0.09,0.231,0.244,0.013,0.026;AN=2;DP=3357;set=filterInvariant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant31-filterInvariant32-variant33-filterInvariant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:51:99:22,7,11,11
chr1	183184690	.	C	T	1570.31	PASS	AC=1;AF=0.529;AN=2;DP=2532;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant11-variant14-variant28-variant29-variant30-variant32-variant33-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,67:133:99:1622,0,1783:35,31,38,29
chr1	183205523	.	CAAAA	CAA,CAAA,CA,C	115.33	PASS	AC=0,1,0,0;AF=0.333,0.217,0.1,0.017;AN=2;DP=385;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:13:99:6,1,4,2
chr1	183218817	.	CGTGTGTGTGTGTGT	CGTGT,CGTGTGTGTGT,C,CGTGTGT,CGTGTGTGTGTGTGTGT,CGTGTGTGT,CGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGT	376.05	PASS	AC=0,0,0,0,1,0,0,0;AF=0.054,0.071,0.054,0.071,0.179,0.071,0.125,0.036;AN=2;DP=867;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-filterInvariant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant26-variant29-variant30-filterInvariant32-variant33-filterInvariant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/5:8:40:0,3,1,4
chr1	183253213	.	G	A	1200.94	PASS	AC=2;AF=0.633;AN=2;DP=1052;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1116,93,0:0,0,7,24
chr1	183253959	.	T	G	727.26	PASS	AC=2;AF=0.662;AN=2;DP=1041;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1071,99,0:0,0,14,19
chr1	183441977	.	C	T	420.19	PASS	AC=1;AF=0.682;AN=2;DP=1048;MQ=60;set=variant2-variant3-variant5-variant8-variant10-variant11-variant15-variant16-variant17-variant18-variant21-variant23-variant26-variant28-variant29-variant32-variant33-variant34-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:676,0,494:2,15,5,19
chr1	183471295	.	G	T	412.66	PASS	AC=2;AF=0.884;AN=2;DP=560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:517,48,0:0,0,11,5
chr1	183486859	.	G	A	3569.45	PASS	AC=2;AF=0.872;AN=2;DP=5932;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3589,353,0:0,0,60,58
chr1	183516100	.	G	C	571.96	PASS	AC=1;AF=0.633;AN=2;DP=554;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:449,0,286:8,1,13,1
chr1	183524638	.	G	GTGTT	554.47	PASS	AC=1;AF=0.55;AN=2;DP=231;MQ=60;set=variant2-variant3-variant4-variant10-variant13-variant17-variant21-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:275,0,981:17,0,7,0
chr1	183524855	.	C	A	9375.79	PASS	AC=2;AF=0.884;AN=2;DP=11842;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,279:279:99:8306,834,0:0,0,135,144
chr1	183525452	.	T	G	4670.67	PASS	AC=2;AF=0.884;AN=2;DP=5384;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3933,384,0:0,0,56,72
chr1	183555879	.	G	A	336.27	PASS	AC=1;AF=0.5;AN=2;DP=74;MQ=60;set=variant2-variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:300,0,434:12,1,8,2
chr1	183559704	.	A	C	1111.69	PASS	AC=1;AF=0.563;AN=2;DP=611;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant11-variant13-variant21-variant26-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:779,0,733:11,18,16,18
chr1	183592275	.	T	C	1227.06	PASS	AC=1;AF=0.5;AN=2;DP=330;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,41:85:99:1059,0,1218:31,13,28,13
chr1	183592353	.	G	T	2127.28	PASS	AC=1;AF=0.5;AN=2;DP=807;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:89,85:174:99:2120,0,2405:44,45,47,38
chr1	183592416	.	G	T	2809.67	PASS	AC=1;AF=0.64;AN=2;DP=6350;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,95:199:99:2324,0,2829:56,48,47,48
chr1	183592594	.	A	G	1507.5	PASS	AC=1;AF=0.5;AN=2;DP=484;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,57:130:99:1434,0,1995:25,48,23,34
chr1	183596045	.	G	A	1898.83	PASS	AC=1;AF=0.5;AN=2;DP=660;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:92,98:190:99:2488,0,2125:56,36,59,39
chr1	183596136	.	A	G	7743.42	PASS	AC=2;AF=0.714;AN=2;DP=8010;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,257:259:99:7747,726,0:1,1,117,140
chr1	183596703	.	G	A	1772.35	PASS	AC=1;AF=0.5;AN=2;DP=422;FractionInformativeReads=1;MQ=60;set=variant9-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,80:142:99:2163,0,1602:20,42,27,53
chr1	183599638	.	C	T	1426.32	PASS	AC=1;AF=0.5;AN=2;DP=446;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,54:110:99:1384,0,1363:34,22,33,21
chr1	183602075	.	T	C	272.47	PASS	AC=1;AF=0.5;AN=2;DP=92;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:298,0,430:11,1,8,1
chr1	183602138	.	A	ATT	1402.2	PASS	AC=1;AF=0.5;AN=2;DP=385;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,30:80:99:890,0,1656:37,13,21,9
chr1	183602308	.	G	T	1634.19	PASS	AC=1;AF=0.5;AN=2;DP=390;FractionInformativeReads=1;MQ=60;set=variant9-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,56:130:99:1322,0,1970:26,48,23,33
chr1	183604596	.	G	A	1252.67	PASS	AC=1;AF=0.5;AN=2;DP=266;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,36:73:99:1398,0,2239:35,2,35,1
chr1	183604597	.	G	A	1252.67	PASS	AC=1;AF=0.5;AN=2;DP=271;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,37:74:99:1398,0,2239:35,2,36,1
chr1	183604637	.	T	A	2695.84	PASS	AC=1;AF=0.5;AN=2;DP=553;MQ=60;set=variant9-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:98,85:183:99:2162,0,2366:63,35,61,24
chr1	183604905	.	A	G	2834.91	PASS	AC=2;AF=0.714;AN=2;DP=3093;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3661,321,0:0,0,27,80
chr1	183605035	.	G	A	251.12	PASS	AC=1;AF=0.5;AN=2;DP=62;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:282,0,379:4,8,2,6
chr1	183605193	.	TG	TGG,T,TGGG	304.59	PASS	AC=1,0,0;AF=0.389,0.056,0.056;AN=2;DP=357;MQ=60;set=variant2-variant7-variant11-variant13-variant26-variant29-variant37-variant39-variant41	GT:DP:GQ:SB	0/1:24:99:9,3,7,5
chr1	183605243	.	C	G	1321.91	PASS	AC=1;AF=0.5;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,24:57:99:575,0,922:22,11,14,10
chr1	183615776	.	G	A	1195.01	PASS	AC=1;AF=0.5;AN=2;DP=340;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,43:93:99:1143,0,1196:22,28,17,26
chr1	183615880	.	A	T	728.79	PASS	AC=1;AF=0.5;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,16:55:99:381,0,1048:18,21,8,8
chr1	183615929	.	A	G	642.4	PASS	AC=1;AF=0.5;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:363,0,557:10,9,5,7
chr1	183616263	.	A	G	940.33	PASS	AC=1;AF=0.5;AN=2;DP=296;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,25:67:99:661,0,1220:26,16,18,7
chr1	183616403	.	T	C	4377.92	PASS	AC=1;AF=0.5;AN=2;DP=1191;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:158,128:286:99:2999,0,4097:90,68,74,54
chr1	183616781	.	G	T	6417.5	PASS	AC=1;AF=0.5;AN=2;DP=1059;FractionInformativeReads=1;MQ=60;set=variant9-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:203,156:359:99:5487,0,7580:85,118,60,96
chr1	183616805	.	T	C	5975.61	PASS	AC=1;AF=0.5;AN=2;DP=1252;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:181,121:302:99:4607,0,7028:72,109,47,74
chr1	183616884	.	C	T	1549.29	PASS	AC=1;AF=0.5;AN=2;DP=531;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:83,50:133:99:1553,0,2394:26,57,13,37
chr1	183616926	.	T	C	1713.93	PASS	AC=1;AF=0.64;AN=2;DP=2686;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,48:105:99:1408,0,1581:19,38,17,31
chr1	183617094	.	G	A	1215.04	PASS	AC=1;AF=0.5;AN=2;DP=381;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,38:96:99:875,0,1529:34,24,18,20
chr1	183617105	.	A	G	1084.18	PASS	AC=1;AF=0.64;AN=2;DP=2636;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant20-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,42:101:99:920,0,1450:33,26,19,23
chr1	183617311	.	T	A	2533.98	PASS	AC=1;AF=0.5;AN=2;DP=702;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:71,70:141:99:1806,0,1884:35,36,38,32
chr1	183617413	.	T	C	2071.97	PASS	AC=1;AF=0.5;AN=2;DP=545;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,54:118:99:1258,0,1541:30,34,22,32
chr1	183617693	.	G	A	987.55	PASS	AC=1;AF=0.5;AN=2;DP=377;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,40:77:99:1175,0,1037:18,19,23,17
chr1	183618065	.	G	T	130.46	PASS	AC=1;AF=0.5;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant11-variant13-variant26-variant29-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:154,0,276:0,7,1,4
chr1	183622314	.	A	G	305.75	PASS	AC=1;AF=0.5;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:775,0,581:10,13,14,14
chr1	183622379	.	T	C	548.72	PASS	AC=1;AF=0.5;AN=2;DP=214;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:655,0,645:12,15,6,15
chr1	183622450	.	T	A	313.47	PASS	AC=1;AF=0.5;AN=2;DP=126;MQ=60;set=variant9-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:323,0,509:8,10,1,9
chr1	183775638	.	A	T	2384.88	PASS	AC=1;AF=0.636;AN=2;DP=2113;MQ=60;set=variant-variant3-variant6-variant8-variant10-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant27-variant29-variant30-variant32-variant33-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,36:87:99:701,0,1301:19,32,20,16
chr1	183816683	.	G	T	162.12	PASS	AC=2;AF=0.583;AN=2;DP=185;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant9-variant12-variant13-variant16-variant27-variant28-variant29-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:378,36,0:0,0,7,5
chr1	183907344	.	A	T	138.09	PASS	AC=1;AF=0.588;AN=2;DP=3716;set=filterInvariant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant31-variant32-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,45:105:99:829,0,3093:32,28,29,16
chr1	183907345	.	A	T	138.05	PASS	AC=1;AF=0.536;AN=2;DP=3003;set=filterInvariant-variant2-variant3-variant5-variant7-variant8-variant10-variant13-variant14-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-filterInvariant31-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:61,58:119:99:2171,0,2729:32,29,36,22
chr1	183907508	.	C	A	2650.34	PASS	AC=1;AF=0.5;AN=2;DP=201;FS=1.088;FractionInformativeReads=1;MQ=60;MQRankSum=-0.92;QD=13.19;ReadPosRankSum=1.684;SOR=0.677;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,102:201:99:2679,0,2495:48,51,52,50
chr1	183915142	.	C	T	500.59	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.649;QD=8.63;ReadPosRankSum=1.434;SOR=0.757;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,22:58:99:529,0,981:17,19,10,12
chr1	183920112	.	T	C	840.12	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.635;QD=11.35;ReadPosRankSum=0.292;SOR=0.79;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,39:74:99:868,0,818:18,17,21,18
chr1	183933612	.	T	C	2020.64	PASS	AC=1;AF=0.5;AN=2;DP=158;FS=1.297;FractionInformativeReads=0.987;MQ=60;MQRankSum=-0.651;QD=12.79;ReadPosRankSum=0.249;SOR=0.566;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,85:156:99:2049,0,1756:26,45,34,51
chr1	183944089	.	A	C	417.67	PASS	AC=1;AF=0.792;AN=2;DP=423;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:173,0,314:8,1,5,0
chr1	183944113	.	G	A	282.88	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=3.01;FractionInformativeReads=1;MQ=60;MQRankSum=1.03;QD=17.68;ReadPosRankSum=-2.007;SOR=0.169;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:311,0,219:6,0,8,2
chr1	183944444	.	C	T	454.1	PASS	AC=1;AF=0.792;AN=2;DP=467;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:187,0,355:3,8,0,6
chr1	183947757	.	G	GA	339.45	PASS	AC=1;AF=0.806;AN=2;DP=519;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:80:80,0,150:0,6,1,3
chr1	184006231	.	G	T	1918.98	PASS	AC=1;AF=0.5;AN=2;DP=190;FS=4.231;FractionInformativeReads=1;MQ=60;MQRankSum=-1.396;QD=10.1;ReadPosRankSum=1.689;SOR=0.44;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:102,88:190:99:1947,0,2475:62,40,47,41
chr1	184006884	.	T	TGTGA	190.49	PASS	AC=1;AF=0.5;AN=2;DP=172;set=filterInvariant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:250,0,580:2,14,5,7
chr1	184006888	.	AGTGTGT	AGTGTGTGTGTGT,AGTGTGTGT,AGT,AGTGT,AGTGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGT,AGTGTGTGTGT,AGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGT,AGTGAGTGTGTGT,A,AGTGTGTGTGTGTGTGTGTGTGTGTGTGT	704.4	PASS	AC=0,0,0,0,0,0,0,0,0,0,1,0;AF=0.074,0.147,0.059,0.029,0.029,0.059,0.074,0.059,0.029,0.029,0.029,0.015;AN=2;DP=2351;set=variant-variant2-variant3-variant5-variant6-variant7-filterInvariant10-variant11-variant12-variant13-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/11:34:99:6,16,1,11
chr1	184006898	.	T	A	412.14	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=4.228;FractionInformativeReads=0.607;MQ=60;MQRankSum=-0.27;QD=7.36;ReadPosRankSum=2.18;SOR=1.961;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,12:34:99:440,0,859:6,16,1,11
chr1	184020821	.	G	A	934.04	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=5;FractionInformativeReads=1;MQ=60;MQRankSum=1.298;QD=14.59;ReadPosRankSum=-0.881;SOR=0.942;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,34:64:99:962,0,729:17,13,14,20
chr1	184020849	.	C	A	881.17	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=4.556;FractionInformativeReads=1;MQ=60;MQRankSum=-0.723;QD=12.59;ReadPosRankSum=-0.1;SOR=0.557;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,36:70:99:909,0,941:20,14,17,19
chr1	184024119	.	A	G	340.78	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=1.523;FractionInformativeReads=1;MQ=60;MQRankSum=0.296;QD=10.99;ReadPosRankSum=2.826;SOR=0.357;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:369,0,409:4,11,6,10
chr1	184039735	.	T	A	965.69	PASS	AC=1;AF=0.5;AN=2;DP=406;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant18-variant27-variant31-variant32-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:472,0,450:10,8,11,6
chr1	184041629	.	C	CA	77.05	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=0;MQ=60;set=variant-variant4-variant18-variant23-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:105,0,161:0,7,0,5
chr1	184476621	.	T	C	178.51	PASS	AC=2;AF=0.68;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:211,18,0:0,0,5,1
chr1	184537506	.	ACTC	A	955.46	PASS	AC=1;AF=0.542;AN=2;DP=590;MQ=60;set=variant-variant4-variant11-variant14-variant19-variant22-variant24-variant29-variant33-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,20:52:99:744,0,1429:22,10,16,4
chr1	184567463	.	G	T	885.7	PASS	AC=2;AF=0.575;AN=2;DP=941;MQ=60;set=variant-variant4-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant27-variant29-variant31-variant32-variant33-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1498,140,0:0,0,28,19
chr1	184588639	.	T	C	1503.01	PASS	AC=1;AF=0.5;AN=2;DP=116;FS=0.722;FractionInformativeReads=1;MQ=60;MQRankSum=-1.724;QD=12.96;ReadPosRankSum=-0.56;SOR=0.821;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:53,63:116:99:1531,0,1279:33,20,41,22
chr1	184593639	.	A	G	385.34	PASS	AC=1;AF=0.5;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant10-variant18-variant22-variant31-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:489,0,699:10,12,9,10
chr1	184593989	.	A	G	430.09	PASS	AC=1;AF=0.556;AN=2;DP=787;MQ=60;set=variant-variant4-variant10-variant18-variant22-variant31-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,49:96:99:1235,0,1176:20,27,19,30
chr1	184595020	.	A	G	987.92	PASS	AC=1;AF=0.6;AN=2;DP=1102;MQ=60;set=variant-variant4-variant10-variant13-variant18-variant22-variant31-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,31:89:99:771,0,1416:28,30,15,16
chr1	184595346	.	C	T	651.44	PASS	AC=1;AF=0.556;AN=2;DP=476;MQ=60;set=variant-variant4-variant10-variant18-variant22-variant31-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:581,0,712:9,14,12,12
chr1	184596584	.	C	A	737.31	PASS	AC=1;AF=0.63;AN=2;DP=1378;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant30-variant31-variant33-variant35-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,25:57:99:563,0,906:18,14,13,12
chr1	184659254	.	C	T	284.98	PASS	AC=1;AF=0.5;AN=2;DP=58;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant28-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:146,0,153:4,1,4,1
chr1	184659318	.	T	A	280.94	PASS	AC=1;AF=0.647;AN=2;DP=1590;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:687,0,341:10,8,17,10
chr1	184659545	.	T	TA	413.56	PASS	AC=1;AF=0.647;AN=2;DP=3003;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,51:87:99:1155,0,728:16,20,21,30
chr1	184659935	.	G	GT	2521.81	PASS	AC=1;AF=0.5;AN=2;DP=565;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:122,138:260:99:3083,0,2630:72,50,66,72
chr1	184660110	.	TA	T	4901.27	PASS	AC=1;AF=0.633;AN=2;DP=11548;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:155,155:310:99:4005,0,3954:65,90,61,94
chr1	184660205	.	T	A	2209.24	PASS	AC=1;AF=0.647;AN=2;DP=4640;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,71:135:99:2129,0,1919:19,45,24,47
chr1	184661642	.	G	A	5153.75	PASS	AC=2;AF=0.676;AN=2;DP=16672;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,417:417:99:12971,1249,0:0,0,183,234
chr1	184662181	.	C	T	3470.02	PASS	AC=1;AF=0.633;AN=2;DP=8593;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:145,129:274:99:3099,0,3628:71,74,61,68
chr1	184663581	.	T	C	857.9	PASS	AC=1;AF=0.638;AN=2;DP=1755;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,29:70:99:712,0,1053:16,25,8,21
chr1	184663643	.	TA	T	223.13	PASS	AC=1;AF=0.638;AN=2;DP=715;MQ=60;set=variant2-variant4-variant7-filterInvariant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,10:35:99:206,0,671:6,19,0,10
chr1	184671909	.	C	A	292.83	PASS	AC=1;AF=0.5;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant25-variant28-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:278,0,352:9,0,8,3
chr1	184677464	.	G	A	941.87	PASS	AC=2;AF=0.676;AN=2;DP=3085;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2477,245,0:0,0,35,47
chr1	184680770	.	T	C	412.36	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=2.315;FractionInformativeReads=1;MQ=60;MQRankSum=1.585;QD=20.62;ReadPosRankSum=1.109;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:441,0,172:5,2,11,2
chr1	184681081	.	A	G	76.45	PASS	AC=2;AF=0.691;AN=2;DP=441;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:23:249,23,0:0,0,2,6
chr1	184688237	.	C	T	481.26	PASS	AC=1;AF=0.5;AN=2;DP=153;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant28-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:222,0,267:7,2,6,3
chr1	184692999	.	TAA	TAAA,TA,TAAAA,T	90.47	PASS	AC=1,0,1,0;AF=0.391,0.094,0.047,0.016;AN=2;DP=1132;set=variant2-variant3-variant4-variant5-variant6-filterInvariant9-variant10-variant11-variant13-variant14-variant15-variant16-filterInvariant19-variant22-variant24-variant25-variant26-filterInvariant27-variant28-filterInvariant29-variant31-filterInvariant32-variant34-variant35-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	1/3:17:92:1,0,5,11
chr1	184695571	.	C	T	477.41	PASS	AC=2;AF=0.676;AN=2;DP=902;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1241,93,0:0,0,3,28
chr1	184706212	.	GT	G	670.49	PASS	AC=2;AF=0.676;AN=2;DP=2966;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2927,241,0:0,0,33,47
chr1	184706306	.	G	A	554.59	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant28-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:219,0,296:1,8,2,6
chr1	184718601	.	G	A	836.5	PASS	AC=1;AF=0.5;AN=2;DP=425;MQ=60;set=variant4-variant7-variant28-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,45:82:99:1022,0,905:20,17,27,18
chr1	184718750	.	GAAAAA	GAAAA,GAA,GAAAAAA,G,GAAA	34.92	PASS	AC=0,1,0,0,0;AF=0.092,0.461,0.013,0.013,0.013;AN=2;DP=1195;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-filterInvariant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:20:99:2,5,1,12
chr1	184760001	.	T	C	2893.78	PASS	AC=2;AF=0.671;AN=2;DP=7454;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,205:207:99:6284,564,0:2,0,88,117
chr1	184760433	.	C	T	3336.63	PASS	AC=2;AF=0.671;AN=2;DP=9524;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,260:260:99:8070,780,0:0,0,141,119
chr1	184760624	.	CTT	CT,C,CTTT	429.46	PASS	AC=1,0,0;AF=0.511,0.068,0.023;AN=2;DP=10111;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:193:99:41,41,59,52
chr1	184761093	.	CTT	CT,C	1348.28	PASS	AC=0,2;AF=0.295,0.557;AN=2;DP=6722;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:94:99:1,0,28,65
chr1	184761365	.	A	G	87.23	PASS	AC=2;AF=0.688;AN=2;DP=405;FractionInformativeReads=1;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:528,48,0:0,0,10,6
chr1	184762173	.	C	T	1323.17	PASS	AC=1;AF=0.5;AN=2;DP=223;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,36:88:99:799,0,1495:31,21,20,16
chr1	184762395	.	A	T	1065.25	PASS	AC=1;AF=0.5;AN=2;DP=132;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,35:62:99:1016,0,691:10,17,9,26
chr1	184763525	.	A	G	1301.44	PASS	AC=2;AF=0.671;AN=2;DP=2213;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1945,168,0:0,0,26,30
chr1	184763596	.	C	T	1610.69	PASS	AC=1;AF=0.588;AN=2;DP=2564;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,24:66:99:708,0,1125:23,19,16,8
chr1	184764067	.	C	G	1366.95	PASS	AC=1;AF=0.588;AN=2;DP=4193;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,58:138:99:1496,0,2182:40,40,27,31
chr1	184764410	.	C	T	3543.49	PASS	AC=1;AF=0.5;AN=2;DP=618;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:157,149:306:99:3797,0,3770:70,87,67,82
chr1	184765072	.	A	G	2307.08	PASS	AC=1;AF=0.5;AN=2;DP=1278;MQ=60;set=variant10-variant11-variant13-variant18-variant19-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,84:158:99:2103,0,1785:40,34,42,42
chr1	184777467	.	A	T	201.67	PASS	AC=1;AF=0.542;AN=2;DP=659;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant8-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:470,0,623:6,16,4,12
chr1	184792101	.	CTGCCT	C	121.66	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.937;QD=17.38;ReadPosRankSum=0.937;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:159,0,135:3,0,4,0
chr1	184792126	.	C	T	203.15	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.825;QD=16.93;ReadPosRankSum=0.289;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:231,0,138:3,1,6,2
chr1	184792642	.	C	T	1170.89	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=7.399;FractionInformativeReads=0.989;MQ=60;MQRankSum=0.844;QD=13.46;ReadPosRankSum=-1.649;SOR=0.263;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,40:86:99:1199,0,1449:33,13,23,17
chr1	184801065	.	T	C	885.83	PASS	AC=1;AF=0.604;AN=2;DP=1869;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant17-variant18-variant19-variant21-variant25-variant28-variant31-variant32-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,43:78:99:1014,0,822:15,20,20,23
chr1	184853810	.	C	T	845.64	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=5.668;FractionInformativeReads=1;MQ=60;MQRankSum=0.162;QD=10.07;ReadPosRankSum=-1.901;SOR=1.296;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,37:84:99:874,0,1138:26,21,25,12
chr1	185014506	.	T	TC	351.24	PASS	AC=2;AF=1;AN=2;DP=1055;FS=0;MQ=60;MQRankSum=1.639;ReadPosRankSum=-0.421;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:943,84,0:0,0,22,6
chr1	185061018	.	G	A	70.09	PASS	AC=1;AF=0.556;AN=2;DP=137;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant18-variant24-variant25-variant31-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:74:113,0,74:0,2,1,3
chr1	185069174	.	C	G	1162.57	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=2.275;FractionInformativeReads=1;MQ=60;MQRankSum=2.764;QD=19.06;ReadPosRankSum=0.785;SOR=0.387;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,36:61:99:1191,0,686:8,17,15,21
chr1	185069675	.	G	GT	3546.91	PASS	AC=1;AF=0.537;AN=2;DP=6725;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant22-variant24-variant25-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:132,128:260:99:2430,0,2782:75,57,75,53
chr1	185087634	.	A	T	2899.06	PASS	AC=1;AF=0.563;AN=2;DP=5024;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant22-variant24-variant25-variant30-variant31-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:86,91:177:99:2376,0,2272:40,46,46,45
chr1	185088697	.	T	C	4539.46	PASS	AC=1;AF=0.54;AN=2;DP=7200;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant22-variant24-variant25-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:145,157:302:99:4005,0,3566:86,59,87,70
chr1	185094277	.	G	T	485.22	PASS	AC=1;AF=0.538;AN=2;DP=964;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant22-variant24-variant25-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:699,0,672:3,18,4,19
chr1	185106534	.	T	C	110.96	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.8;QD=7.93;ReadPosRankSum=-0.667;SOR=1.112;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:139,0,244:6,3,4,1
chr1	185119794	.	C	T	408.52	PASS	AC=2;AF=1;AN=2;DP=565;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:699,63,0:0,0,5,16
chr1	185129889	.	A	G	290.91	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=2.128;FractionInformativeReads=1;MQ=60;MQRankSum=1.585;QD=14.55;ReadPosRankSum=0.317;SOR=0.283;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:319,0,219:6,1,9,4
chr1	185135745	.	A	G	765.41	PASS	AC=1;AF=0.558;AN=2;DP=1932;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant22-variant24-variant25-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,39:77:99:1014,0,873:16,22,17,22
chr1	185137454	.	T	TAAATGATAGAC	2145.84	PASS	AC=1;AF=0.558;AN=2;DP=2121;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant22-variant24-variant25-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,48:96:99:1821,0,8935:22,26,24,24
chr1	185137461	.	A	T	2001.71	PASS	AC=1;AF=0.558;AN=2;DP=1908;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant22-variant24-variant25-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,38:84:99:1454,0,8935:20,26,19,19
chr1	185137464	.	T	TAA	1939.88	PASS	AC=1;AF=0.558;AN=2;DP=1890;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant22-variant24-variant25-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,37:84:99:1412,0,8895:20,27,18,19
chr1	185200904	.	C	G	903.32	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,37:65:99:1043,0,745:16,12,18,19
chr1	185201061	.	T	C	655.86	PASS	AC=1;AF=0.556;AN=2;DP=647;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant18-variant22-variant24-variant31-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:403,0,539:5,14,3,11
chr1	185240474	.	A	G	1509.88	PASS	AC=1;AF=0.522;AN=2;DP=2558;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant22-variant24-variant25-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,45:95:99:1064,0,1239:20,30,20,25
chr1	185259731	.	A	G	78.47	PASS	AC=1;AF=0.522;AN=2;DP=396;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant18-variant22-variant24-variant25-variant27-variant31-variant35-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,13:16:89:495,0,89:2,1,12,1
chr1	185260515	.	T	A	780.91	PASS	AC=1;AF=0.5;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:719,0,432:10,6,17,7
chr1	185265711	.	T	C	5655.07	PASS	AC=2;AF=0.58;AN=2;DP=11418;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant18-variant22-variant24-variant25-variant27-variant31-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,471:471:99:14280,1409,0:0,0,218,253
chr1	185267114	.	A	G	3841.63	PASS	AC=2;AF=0.58;AN=2;DP=6406;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant18-variant22-variant24-variant25-variant27-variant31-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,259:260:99:8538,733,0:0,1,97,162
chr1	185269916	.	T	C	199.68	PASS	AC=2;AF=0.577;AN=2;DP=316;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant22-variant24-variant25-variant27-variant31-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:385,30,0:0,0,9,1
chr1	185278176	.	T	C	1043.34	PASS	AC=1;AF=0.5;AN=2;DP=196;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,57:93:99:1363,0,885:17,19,30,27
chr1	185286399	.	G	T	295.35	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,26:42:99:606,0,304:7,9,11,15
chr1	185815064	.	T	A	208.4	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.256;QD=16.03;ReadPosRankSum=-0.271;SOR=0.627;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:237,0,148:4,1,6,2
chr1	185833565	.	A	C	278.15	PASS	AC=2;AF=0.641;AN=2;DP=943;MQ=60;set=variant-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1014,84,0:0,0,22,6
chr1	185833880	.	A	G	699.47	PASS	AC=1;AF=0.619;AN=2;DP=1477;MQ=60;set=variant5-variant9-variant13-variant15-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:1080,0,991:8,27,10,26
chr1	185834847	.	GTTTC	G	905.52	PASS	AC=1;AF=0.579;AN=2;DP=814;MQ=60;set=variant5-variant9-variant13-variant15-variant17-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant32-variant34-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:754,0,853:11,5,16,7
chr1	185958737	.	A	G	942.07	PASS	AC=1;AF=0.5;AN=2;DP=466;MQ=60;set=variant-variant10-variant13-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,36:87:99:846,0,1312:21,30,15,21
chr1	185988567	.	CT	C	320.82	PASS	AC=2;AF=0.731;AN=2;DP=243;MQ=60;set=variant2-variant6-variant9-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:254,27,0:0,0,8,1
chr1	186022032	.	T	G	365.74	PASS	AC=2;AF=0.679;AN=2;DP=862;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:804,63,0:0,0,18,3
chr1	186026474	.	T	C	1787.88	PASS	AC=2;AF=0.645;AN=2;DP=5173;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3413,345,0:0,0,48,67
chr1	186030902	.	G	T	62.08	PASS	AC=2;AF=0.667;AN=2;DP=968;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:855,81,0:0,0,20,7
chr1	186031041	.	C	T	752.68	PASS	AC=2;AF=0.679;AN=2;DP=4450;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2703,276,0:0,0,49,43
chr1	186031763	.	T	TC	841.74	PASS	AC=1;AF=0.5;AN=2;DP=207;MQ=60;set=variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:757,0,702:11,17,11,18
chr1	186039006	.	C	T	367.2	PASS	AC=2;AF=0.653;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:669,48,0:0,0,0,16
chr1	186050417	.	A	G	1033.75	PASS	AC=2;AF=0.657;AN=2;DP=2855;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2206,203,0:0,0,35,33
chr1	186055371	.	A	G	1560.4	PASS	AC=2;AF=0.671;AN=2;DP=2562;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2302,213,0:0,0,47,24
chr1	186057181	.	T	C	2306.83	PASS	AC=2;AF=0.671;AN=2;DP=5063;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4070,378,0:0,0,44,82
chr1	186057347	.	A	T	1550.02	PASS	AC=1;AF=0.5;AN=2;DP=237;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,46:104:99:1045,0,1343:30,28,21,25
chr1	186064760	.	A	T	73.72	PASS	AC=2;AF=0.707;AN=2;DP=364;MQ=60;set=variant-variant5-variant6-filterInvariant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:284,30,0:0,0,2,8
chr1	186077463	.	A	G	334.78	PASS	AC=2;AF=0.657;AN=2;DP=765;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1142,90,0:0,0,26,4
chr1	186081918	.	C	T	1095	PASS	AC=2;AF=0.671;AN=2;DP=3685;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2934,285,0:0,0,58,37
chr1	186086557	.	G	GT	1228.84	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=0.857;FractionInformativeReads=1;MQ=60;MQRankSum=-1.293;QD=12.94;ReadPosRankSum=-0.272;SOR=0.554;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,50:95:99:1266,0,1102:33,12,35,15
chr1	186086578	.	G	A	1232.46	PASS	AC=2;AF=0.657;AN=2;DP=4250;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:4814,377,0:0,0,89,37
chr1	186089072	.	G	A	2358.01	PASS	AC=1;AF=0.563;AN=2;DP=3493;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant17-variant18-variant20-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,72:137:99:1876,0,1735:35,30,35,37
chr1	186089112	.	T	C	2351.44	PASS	AC=2;AF=0.583;AN=2;DP=4249;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant17-variant18-variant20-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,149:150:99:4057,438,0:1,0,74,75
chr1	186089363	.	C	A	229.07	PASS	AC=2;AF=0.604;AN=2;DP=442;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant17-variant18-variant20-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:316,24,0:0,0,1,7
chr1	186092076	.	A	C	964.74	PASS	AC=2;AF=0.635;AN=2;DP=1931;MQ=60;set=variant-variant6-variant9-variant10-variant13-variant14-variant17-variant18-variant20-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1768,155,0:0,0,35,17
chr1	186099688	.	T	C	681.1	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.115;QD=10.64;ReadPosRankSum=-0.631;SOR=0.697;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,31:64:99:709,0,732:17,16,16,15
chr1	186101539	.	A	G	918.68	PASS	AC=2;AF=0.614;AN=2;DP=1232;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant17-variant18-variant20-variant22-variant24-variant27-variant28-variant29-variant30-variant32-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1366,132,0:0,0,19,25
chr1	186113931	.	T	G	710.04	PASS	AC=2;AF=0.587;AN=2;DP=1958;MQ=60;set=variant-variant6-variant9-variant10-variant14-variant17-variant18-variant22-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3130,288,0:0,0,36,60
chr1	186114443	.	CT	C	739.92	PASS	AC=2;AF=0.605;AN=2;DP=1190;MQ=60;set=variant6-variant9-variant10-variant13-variant14-variant17-variant18-variant22-variant24-variant27-variant29-variant30-variant32-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1646,162,0:0,0,36,18
chr1	186115161	.	GA	GAA,G	260.27	PASS	AC=1,0;AF=0.476,0.048;AN=2;DP=827;MQ=60;set=variant5-filterInvariant7-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant25-filterInvariant28-variant29-filterInvariant32-filterInvariant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:37:99:5,10,8,14
chr1	186141301	.	G	A	1289.6	PASS	AC=2;AF=0.647;AN=2;DP=5075;set=variant-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4304,414,0:0,0,55,83
chr1	186157160	.	T	A	1559.19	PASS	AC=1;AF=0.5;AN=2;DP=243;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,65:133:99:1582,0,1791:27,41,27,38
chr1	186157184	.	T	G	1030.46	PASS	AC=1;AF=0.583;AN=2;DP=1405;FractionInformativeReads=1;set=variant6-variant9-variant10-variant11-variant18-variant19-variant24-variant26-variant29-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,57:113:99:1579,0,1502:22,34,21,36
chr1	186159835	.	A	G	3507.39	PASS	AC=2;AF=0.989;AN=2;DP=4769;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3249,303,0:0,0,39,62
chr1	186265948	.	T	A	1719.76	PASS	AC=2;AF=0.742;AN=2;DP=2410;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2119,192,0:0,0,44,20
chr1	186277088	.	G	C	7257.11	PASS	AC=2;AF=1;AN=2;DP=22715;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,489:489:99:15239,1464,0:0,0,255,234
chr1	186294783	.	C	T	77.49	PASS	AC=2;AF=0.667;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=60;set=variant28-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:170,15,0:0,0,4,1
chr1	186313249	.	A	G	1097.06	PASS	AC=2;AF=0.977;AN=2;DP=1594;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1461,132,0:0,0,16,28
chr1	186355168	.	A	G	742.79	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.957;QD=12.81;ReadPosRankSum=-1.33;SOR=0.811;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:771,0,606:12,16,12,18
chr1	186357523	.	T	C	929.35	PASS	AC=2;AF=0.966;AN=2;DP=1142;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:470,48,0:0,0,10,6
chr1	186368338	.	AT	A,ATT	32.69	PASS	AC=1,0;AF=0.439,0.061;AN=2;DP=2230;set=filterInvariant-variant2-filterInvariant3-variant4-filterInvariant5-variant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-filterInvariant29-variant30-filterInvariant31-filterInvariant32-variant33-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:28:99:5,13,2,8
chr1	186641626	.	G	A	3774.78	PASS	AC=2;AF=1;AN=2;DP=5071;FS=0;MQ=60;MQRankSum=1.272;ReadPosRankSum=1.028;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3315,315,0:0,0,57,48
chr1	186642429	.	A	G	2852.11	PASS	AC=2;AF=0.932;AN=2;DP=10479;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,212:212:99:6751,636,0:0,0,87,125
chr1	186644651	.	T	C	94.73	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;QD=23.68;ReadPosRankSum=0.727;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:123,0,34:0,1,0,3
chr1	186648197	.	C	G	451.9	PASS	AC=1;AF=0.577;AN=2;DP=489;MQ=60;set=variant2-variant3-variant4-variant10-variant14-variant15-variant17-variant24-variant27-variant33-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,18:26:99:526,0,190:6,2,14,4
chr1	186649221	.	A	G	748.73	PASS	AC=1;AF=0.814;AN=2;DP=2418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,26:63:99:535,0,964:22,15,14,12
chr1	186649485	.	G	A	1577.58	PASS	AC=1;AF=0.5;AN=2;DP=134;FS=2.17;FractionInformativeReads=1;MQ=60;MQRankSum=-0.639;QD=11.77;ReadPosRankSum=0.336;SOR=0.528;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,68:134:99:1606,0,1503:28,38,32,36
chr1	186839861	.	G	A	2284.45	PASS	AC=1;AF=0.688;AN=2;DP=1673;set=variant2-variant4-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:714,0,688:15,15,18,15
chr1	186863385	.	TAA	T	616.44	PASS	AC=1;AF=0.63;AN=2;DP=970;MQ=60;set=variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,30:51:99:1145,0,827:7,14,9,21
chr1	186908385	.	C	T	589.04	PASS	AC=2;AF=0.639;AN=2;DP=385;MQ=60;set=variant-variant4-variant5-variant6-variant10-variant12-variant13-variant16-variant18-variant21-variant26-variant29-variant35-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:719,60,0:0,0,3,17
chr1	186919732	.	A	T	359.28	PASS	AC=2;AF=0.965;AN=2;DP=847;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:324,27,0:0,0,7,2
chr1	186919993	.	G	A	1714.03	PASS	AC=2;AF=0.965;AN=2;DP=2106;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1617,147,0:0,0,17,32
chr1	186925168	.	A	G	151.77	PASS	AC=2;AF=0.965;AN=2;DP=514;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:405,27,0:0,0,6,3
chr1	186925169	.	G	T	234.21	PASS	AC=1;AF=0.556;AN=2;DP=103;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant10-variant16-variant26-variant29-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:63:247,0,63:1,1,5,2
chr1	186925194	.	T	C	373.54	PASS	AC=2;AF=0.965;AN=2;DP=795;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:398,30,0:0,0,7,3
chr1	186925552	.	T	C	1147.33	PASS	AC=2;AF=0.965;AN=2;DP=1538;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1475,132,0:0,0,13,31
chr1	186946912	.	G	A	2238.28	PASS	AC=2;AF=0.977;AN=2;DP=3474;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2453,228,0:0,0,27,49
chr1	187610301	.	G	A	312.41	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.18;QD=22.32;ReadPosRankSum=0;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,11:14:85:341,0,85:3,0,9,2
chr1	190066742	.	G	A	1137.36	PASS	AC=1;AF=0.677;AN=2;DP=2218;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,36:70:99:952,0,970:25,9,25,11
chr1	190760498	.	T	C	369.74	PASS	AC=2;AF=0.656;AN=2;DP=1454;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1457,147,0:0,0,28,21
chr1	190760787	.	T	C	89.43	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;set=variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:140,0,108:0,3,1,5
chr1	190760788	.	C	T	177.17	PASS	AC=1;AF=0.55;AN=2;DP=112;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant13-variant15-variant18-variant19-variant23-variant28-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,233:1,5,0,3
chr1	190768874	.	G	C	332.93	PASS	AC=1;AF=0.5;AN=2;DP=113;FractionInformativeReads=1;MQ=60;set=variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,10:33:99:159,0,618:15,8,6,4
chr1	190768930	.	G	C	481.22	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=1.172;FractionInformativeReads=1;MQ=60;MQRankSum=1.106;QD=8.75;ReadPosRankSum=-0.463;SOR=0.988;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,15:55:99:509,0,1849:21,19,9,6
chr1	190768945	.	C	A	709.97	PASS	AC=1;AF=0.5;AN=2;DP=194;FractionInformativeReads=1;MQ=60;set=variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,17:57:99:553,0,1863:21,19,9,8
chr1	190769033	.	T	C	267.8	PASS	AC=1;AF=0.5;AN=2;DP=350;MQ=60;set=variant-variant13-variant15-variant19-variant23-variant28-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,19:28:99:519,0,220:4,5,6,13
chr1	192128183	.	G	A	589.89	PASS	AC=2;AF=0.756;AN=2;DP=788;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:706,66,0:0,0,13,9
chr1	192129370	.	G	A	332.99	PASS	AC=1;AF=0.771;AN=2;DP=352;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:59:320,0,59:2,1,8,1
chr1	192153792	.	G	A	1043.01	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=2.767;FractionInformativeReads=1;MQ=60;MQRankSum=-1.993;QD=10.98;ReadPosRankSum=-0.4;SOR=1.033;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,43:95:99:1071,0,1430:22,30,15,28
chr1	192312084	.	TC	T	778.16	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0;FractionInformativeReads=0.985;MQ=60;MQRankSum=0.489;QD=11.97;ReadPosRankSum=0.843;SOR=0.757;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,27:64:99:815,0,1186:24,13,18,9
chr1	192335271	.	C	CTAAT	1879.74	PASS	AC=1;AF=0.667;AN=2;DP=3349;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,47:95:99:1820,0,2744:30,18,27,20
chr1	192335792	.	A	G	3901.61	PASS	AC=1;AF=0.667;AN=2;DP=11521;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:175,145:320:99:3563,0,4222:93,82,79,66
chr1	192336103	.	AC	A	1444.8	PASS	AC=1;AF=0.5;AN=2;DP=130;FS=0;FractionInformativeReads=0.985;MQ=60;MQRankSum=-1.504;QD=11.11;ReadPosRankSum=-0.992;SOR=0.725;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,48:128:99:1482,0,2792:41,39,25,23
chr1	192544754	.	C	CT	202.04	PASS	AC=1;AF=0.762;AN=2;DP=696;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:71:71,0,187:8,0,3,1
chr1	192544795	.	A	G	595.17	PASS	AC=2;AF=0.872;AN=2;DP=1381;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:927,78,0:0,0,20,6
chr1	192545099	.	G	A	1405.93	PASS	AC=1;AF=0.845;AN=2;DP=1218;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:218,0,588:3,15,1,7
chr1	192547710	.	A	G	2981.26	PASS	AC=1;AF=0.563;AN=2;DP=4352;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,79:159:99:2066,0,2121:43,37,41,38
chr1	192547791	.	T	C	2137.76	PASS	AC=1;AF=0.5;AN=2;DP=367;FractionInformativeReads=1;MQ=60;set=variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:103,80:183:99:2214,0,2964:58,45,47,33
chr1	192548041	.	C	T	6518.89	PASS	AC=1;AF=0.5;AN=2;DP=751;FractionInformativeReads=1;MQ=60;set=variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:209,146:355:99:3512,0,10890:86,123,63,83
chr1	192548045	.	T	C	4356.18	PASS	AC=1;AF=0.5;AN=2;DP=3547;MQ=60;set=variant13-variant16-variant17-variant24-variant30-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:207,141:348:99:5243,0,5571:86,121,57,84
chr1	192548229	.	G	T	838.7	PASS	AC=1;AF=0.5;AN=2;DP=179;FractionInformativeReads=1;MQ=60;set=variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,38:85:99:1213,0,1376:24,23,17,21
chr1	192548543	.	T	G	873.8	PASS	AC=1;AF=0.5;AN=2;DP=496;MQ=60;set=variant13-variant16-variant24-variant30-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:1078,0,1684:16,17,12,16
chr1	192548559	.	G	C	835.52	PASS	AC=1;AF=0.5;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant13-variant16-variant24-variant30-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:995,0,1613:13,16,12,15
chr1	192549211	.	T	C	36.49	PASS	AC=1;AF=0.6;AN=2;DP=27;MQ=60;set=variant13-variant16-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:74:156,0,74:1,2,0,4
chr1	192605325	.	C	T	4213.87	PASS	AC=1;AF=0.71;AN=2;DP=8999;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,110:236:99:2868,0,2951:63,63,69,41
chr1	192606687	.	T	C	916.82	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=9.513;FractionInformativeReads=1;MQ=60;MQRankSum=-1.378;QD=13.29;ReadPosRankSum=-2.184;SOR=1.919;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:945,0,938:23,14,26,6
chr1	192607246	.	C	T	733.57	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=5.024;FractionInformativeReads=1;MQ=60;MQRankSum=-0.746;QD=10.95;ReadPosRankSum=-1.724;SOR=0.284;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:762,0,899:23,10,19,15
chr1	193051685	.	G	A	1717.5	PASS	AC=1;AF=0.845;AN=2;DP=1640;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:499,0,476:11,7,11,8
chr1	193054154	.	G	A	1900.18	PASS	AC=1;AF=0.643;AN=2;DP=2342;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant19-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,40:72:99:1074,0,843:15,17,23,17
chr1	193054485	.	T	C	4661.28	PASS	AC=1;AF=0.833;AN=2;DP=18220;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:194,208:402:99:5028,0,4779:115,79,119,89
chr1	193057207	.	A	G	1201.6	PASS	AC=1;AF=0.845;AN=2;DP=1264;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:586,0,504:5,12,5,14
chr1	193057329	.	A	G	40.7	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.198;QD=5.81;ReadPosRankSum=0.198;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,167:4,1,2,0
chr1	193057513	.	A	AT	2843.65	PASS	AC=1;AF=0.854;AN=2;DP=3661;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,39:96:99:805,0,1308:34,23,23,16
chr1	193057971	.	T	A	5895.83	PASS	AC=1;AF=0.845;AN=2;DP=5254;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,56:111:99:1690,0,1625:28,27,31,25
chr1	193058339	.	A	C	1699.7	PASS	AC=1;AF=0.5;AN=2;DP=113;FS=1.516;FractionInformativeReads=1;MQ=60;MQRankSum=-0.589;QD=15.04;ReadPosRankSum=-2.742;SOR=0.538;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,56:113:99:1728,0,1759:23,34,25,31
chr1	193074371	.	A	G	133.63	PASS	AC=2;AF=0.849;AN=2;DP=553;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:422,36,0:0,0,8,4
chr1	193074511	.	A	G	510.91	PASS	AC=1;AF=0.5;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:539,0,370:7,9,13,10
chr1	193074651	.	T	A	869.91	PASS	AC=2;AF=0.849;AN=2;DP=3542;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2578,246,0:0,0,46,37
chr1	193075108	.	C	T	4928.55	PASS	AC=2;AF=0.849;AN=2;DP=11510;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,238:240:99:10379,646,0:1,1,122,116
chr1	193075118	.	C	CAA	5062.45	PASS	AC=2;AF=0.849;AN=2;DP=12028;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,247:249:99:10230,660,0:1,1,118,129
chr1	193090865	.	C	A	1985.36	PASS	AC=1;AF=0.81;AN=2;DP=9701;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,107:230:99:2516,0,2798:62,61,58,49
chr1	193094375	.	T	C	463.8	PASS	AC=1;AF=0.81;AN=2;DP=1798;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,25:39:99:682,0,365:5,9,10,15
chr1	193104827	.	G	A	46.49	PASS	AC=1;AF=0.843;AN=2;DP=209;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:37:81,0,37:0,1,0,2
chr1	193148322	.	A	T	3533.95	PASS	AC=1;AF=0.5;AN=2;DP=272;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.095;QD=12.99;ReadPosRankSum=2.846;SOR=0.716;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:131,141:272:99:3562,0,3249:63,68,67,74
chr1	193205272	.	T	A	1177.54	PASS	AC=2;AF=0.821;AN=2;DP=3136;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2018,186,0:0,0,42,20
chr1	193218793	.	T	G	148.21	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.219;QD=16.47;ReadPosRankSum=1.652;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:176,0,137:4,0,5,0
chr1	196197274	.	C	G	1659.95	PASS	AC=1;AF=0.6;AN=2;DP=874;MQ=60;set=variant13-variant14-variant15-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:90,58:148:99:1358,0,2190:50,40,35,23
chr1	196227526	.	A	G	3027.56	PASS	AC=2;AF=1;AN=2;DP=3780;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2000,192,0:0,0,26,38
chr1	196242764	.	T	G	923.19	PASS	AC=1;AF=0.942;AN=2;DP=1794;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:504,0,499:3,13,4,13
chr1	196254970	.	C	T	606.9	PASS	AC=2;AF=1;AN=2;DP=1089;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1093,81,0:0,0,3,24
chr1	196342444	.	A	G	382.75	PASS	AC=1;AF=0.5;AN=2;DP=282;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant10-variant15-variant22-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:445,0,465:6,12,4,12
chr1	196398619	.	T	C	299.27	PASS	AC=1;AF=0.662;AN=2;DP=1031;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:507,0,416:12,1,13,2
chr1	196398974	.	T	A	146.83	PASS	AC=1;AF=0.662;AN=2;DP=673;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:433,0,331:0,9,3,11
chr1	196461513	.	C	T	607.53	PASS	AC=1;AF=0.989;AN=2;DP=654;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:186,0,154:1,4,1,5
chr1	196620917	.	C	T	563.71	PASS	AC=1;AF=0.575;AN=2;DP=499;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant8-variant9-variant11-variant12-variant17-variant18-variant22-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:368,0,461:12,5,10,1
chr1	196621053	.	T	C	1036.92	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.844;QD=12.06;ReadPosRankSum=1.225;SOR=0.717;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,40:86:99:1065,0,1204:25,21,22,18
chr1	196621212	.	G	C	901.04	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=0.887;FractionInformativeReads=1;MQ=60;MQRankSum=-1.383;QD=11.86;ReadPosRankSum=-2.473;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,33:76:99:929,0,1120:19,24,13,20
chr1	196642072	.	C	T	957.22	PASS	AC=1;AF=0.571;AN=2;DP=1321;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant14-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant34-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,38:62:99:980,0,575:14,10,23,15
chr1	196642233	.	G	A	2320.35	PASS	AC=1;AF=0.571;AN=2;DP=2723;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant14-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant34-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,55:128:99:1269,0,1722:35,38,22,33
chr1	196642969	.	C	CTT	2365.56	PASS	AC=1;AF=0.526;AN=2;DP=2007;MQ=60;set=variant4-variant7-variant10-variant14-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,47:86:99:1511,0,1201:19,20,26,21
chr1	196654324	.	A	C	2151.96	PASS	AC=1;AF=0.709;AN=2;DP=9927;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,105:217:99:2565,0,2826:53,59,52,53
chr1	196658497	.	G	T	62.35	PASS	AC=1;AF=0.705;AN=2;DP=517;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:97:97,0,244:5,2,3,0
chr1	196658905	.	G	A	280.9	PASS	AC=1;AF=0.731;AN=2;DP=429;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:64:64,0,202:2,5,1,2
chr1	196659237	.	C	T	527.58	PASS	AC=1;AF=0.709;AN=2;DP=3046;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,20:58:99:527,0,1005:25,13,16,4
chr1	196670757	.	C	T	125.25	PASS	AC=1;AF=0.725;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:202,0,106:0,3,2,4
chr1	196684625	.	G	T	395.07	PASS	AC=1;AF=0.707;AN=2;DP=1025;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:205,0,541:14,0,6,1
chr1	196695742	.	A	G	963.27	PASS	AC=1;AF=0.536;AN=2;DP=1311;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant13-variant20-variant26-variant27-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,54:105:99:1220,0,1122:25,26,25,29
chr1	196706677	.	G	T	1768.27	PASS	AC=1;AF=0.5;AN=2;DP=443;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,58:126:99:1319,0,1644:39,29,31,27
chr1	196709774	.	G	T	648.34	PASS	AC=1;AF=0.533;AN=2;DP=736;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant13-variant20-variant26-variant27-variant29-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,28:41:99:696,0,319:8,5,19,9
chr1	196710917	.	A	G	38.61	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:276,0,170:5,0,7,0
chr1	196711067	.	G	T	1033.95	PASS	AC=1;AF=0.5;AN=2;DP=325;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,56:114:99:1442,0,1362:32,26,30,26
chr1	196711098	.	C	T	1372.29	PASS	AC=1;AF=0.5;AN=2;DP=127;FS=0.656;FractionInformativeReads=1;MQ=60;MQRankSum=-1.985;QD=10.81;ReadPosRankSum=1.261;SOR=0.787;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,65:127:99:1401,0,1325:31,31,31,34
chr1	196712577	.	T	C	330.22	PASS	AC=1;AF=0.5;AN=2;DP=3444;FractionInformativeReads=1;set=variant-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant35-variant37-filterInvariant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,26:105:99:875,0,3589:50,29,19,7
chr1	196712586	.	C	T	389.67	PASS	AC=1;AF=0.5;AN=2;DP=3826;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant35-variant37-filterInvariant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,33:117:99:1048,0,3672:53,31,25,8
chr1	196712598	.	T	C	202.73	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=126;FS=9.584;FractionInformativeReads=1;MQ=55.57;MQRankSum=-5.084;QD=1.61;ReadPosRankSum=0.728;SOR=1.891;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:109,17:126:99:231,0,2948:67,42,14,3
chr1	196716541	.	C	T	505.81	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=0;FractionInformativeReads=1;MQ=59.51;MQRankSum=-0.187;QD=16.86;ReadPosRankSum=-1.309;SOR=0.412;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:534,0,491:1,13,2,14
chr1	196743927	.	A	C	79.48	PASS	AC=2;AF=0.676;AN=2;DP=199;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant20-variant26-variant27-variant29-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:266,24,0:0,0,5,3
chr1	196743964	.	C	A	191.66	PASS	AC=1;AF=0.647;AN=2;DP=380;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant20-variant26-variant27-variant29-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:351,0,216:4,4,8,4
chr1	196757258	.	C	T	230.47	PASS	AC=2;AF=0.833;AN=2;DP=184;FractionInformativeReads=1;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant16-variant19-variant20-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:330,36,0:0,0,7,5
chr1	196757392	.	C	T	248.54	PASS	AC=2;AF=0.796;AN=2;DP=365;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant14-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:263,24,0:0,0,4,4
chr1	196757874	.	G	A	1473.85	PASS	AC=2;AF=0.676;AN=2;DP=1343;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant20-variant26-variant27-variant29-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3472,265,0:0,0,48,40
chr1	196757881	.	G	T	1473.85	PASS	AC=1;AF=0.647;AN=2;DP=1382;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant20-variant26-variant27-variant29-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,50:90:99:1214,0,1001:24,16,25,25
chr1	196758286	.	T	C	726.37	PASS	AC=2;AF=0.676;AN=2;DP=654;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant20-variant26-variant27-variant29-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1029,84,0:0,0,24,4
chr1	196758430	.	A	T	2452.89	PASS	AC=2;AF=0.694;AN=2;DP=3225;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant20-variant26-variant27-variant29-variant30-variant31-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5268,559,0:0,0,92,95
chr1	196758541	.	A	C	733.34	PASS	AC=2;AF=0.676;AN=2;DP=899;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant20-variant26-variant27-variant29-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1936,153,0:0,0,8,43
chr1	196758778	.	G	A	269.99	PASS	AC=2;AF=0.679;AN=2;DP=170;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant8-variant10-variant13-variant26-variant27-variant29-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:396,45,0:0,0,8,7
chr1	196762290	.	T	G	49.5	PASS	AC=1;AF=0.5;AN=2;DP=3;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.736;QD=16.5;ReadPosRankSum=0.736;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:36:78,0,36:1,0,2,0
chr1	196762302	.	C	A	31.59	PASS	AC=2;AF=0.643;AN=2;DP=84;FS=0;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant8-variant9-variant13-variant20-variant26-variant27-variant29-variant31-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:177,12,0:0,0,4,0
chr1	196794519	.	C	T	377.93	PASS	AC=2;AF=0.795;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:177,12,0:0,0,4,0
chr1	196795741	.	C	T	37.69	PASS	AC=2;AF=0.778;AN=2;DP=239;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant17-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:316,24,0:0,0,6,2
chr1	196795761	.	C	G	762.71	PASS	AC=2;AF=0.786;AN=2;DP=354;FractionInformativeReads=1;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:381,27,0:0,0,7,2
chr1	196795844	.	C	T	583.43	PASS	AC=1;AF=0.714;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant13-variant18-variant26-variant27-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:377,0,406:9,5,9,6
chr1	196795849	.	A	G	611.51	PASS	AC=2;AF=0.781;AN=2;DP=1185;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1247,93,0:0,0,18,13
chr1	196796184	.	G	A	998.15	PASS	AC=2;AF=0.774;AN=2;DP=2174;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2212,222,0:0,0,32,42
chr1	196796240	.	T	A	532.27	PASS	AC=2;AF=0.774;AN=2;DP=1049;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1266,110,0:0,0,10,27
chr1	196797044	.	T	C	79.24	PASS	AC=2;AF=0.808;AN=2;DP=63;FS=0;FractionInformativeReads=1;set=variant-variant4-variant8-variant9-variant10-variant13-variant17-variant26-variant28-variant32-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:104,9,0:0,0,3,0
chr1	196797123	.	C	T	409.13	PASS	AC=2;AF=0.774;AN=2;DP=831;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:832,95,0:0,0,19,13
chr1	196797216	.	T	C	348.45	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=45.59;MQRankSum=1.007;QD=9.96;ReadPosRankSum=-0.413;SOR=0.836;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:377,0,384:7,11,6,11
chr1	196797238	.	C	T	366.36	PASS	AC=2;AF=0.759;AN=2;DP=1104;set=variant-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant13-variant16-variant17-variant19-filterInvariant21-filterInvariant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1195,81,0:0,0,9,18
chr1	196797244	.	C	G	369.37	PASS	AC=2;AF=0.759;AN=2;DP=1035;FractionInformativeReads=1;set=variant-variant4-filterInvariant5-variant6-variant7-variant8-filterInvariant9-variant10-variant13-variant16-variant17-variant19-filterInvariant21-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant31-variant32-filterInvariant35-variant37-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1170,78,0:0,0,8,18
chr1	196797292	.	G	C	136.13	PASS	AC=2;AF=0.962;AN=2;DP=65;FS=0;MQRankSum=-1.589;ReadPosRankSum=-1.067;set=filterInvariant4-filterInvariant6-variant8-filterInvariant10-filterInvariant21-filterInvariant25-filterInvariant27-filterInvariant28-filterInvariant31-variant32-variant37-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:234,24,0:0,0,0,8
chr1	196797357	.	A	G	50.98	PASS	AC=2;AF=1;AN=2;DP=6;FS=0;set=filterInvariant32-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:71,6,0:0,0,1,1
chr1	196799691	.	G	A	642.85	PASS	AC=1;AF=0.692;AN=2;DP=916;FractionInformativeReads=1;set=variant-variant4-variant6-variant8-variant9-variant13-variant26-variant27-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,31:82:99:804,0,1468:35,16,22,9
chr1	196799888	.	A	C	853.94	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=7.019;FractionInformativeReads=0.987;MQ=59.87;MQRankSum=-2.434;QD=10.95;ReadPosRankSum=0.45;SOR=1.602;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,32:77:99:882,0,1228:15,30,6,26
chr1	196801042	.	G	T	1276.34	PASS	AC=2;AF=0.774;AN=2;DP=4112;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4325,437,0:0,0,80,66
chr1	196801078	.	A	T	1107.45	PASS	AC=1;AF=0.75;AN=2;DP=4024;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,65:154:99:1334,0,2056:43,46,32,33
chr1	196801190	.	C	A	319.26	PASS	AC=1;AF=0.75;AN=2;DP=1319;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,21:53:99:527,0,995:7,25,6,15
chr1	196874192	.	A	G	194.18	PASS	AC=1;AF=0.5;AN=2;DP=32;FractionInformativeReads=1;MQ=60;set=variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:72:72,0,122:3,0,2,0
chr1	196874356	.	G	T	2988.99	PASS	AC=2;AF=1;AN=2;DP=4392;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3391,359,0:0,0,64,56
chr1	196883469	.	T	A	387.48	PASS	AC=1;AF=0.545;AN=2;DP=365;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant9-variant26-variant27-variant30-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:362,0,335:8,3,10,6
chr1	196884074	.	A	AT	94.84	PASS	AC=1;AF=0.5;AN=2;DP=603;set=variant-variant4-variant5-variant6-variant8-filterInvariant10-variant20-variant26-variant27-variant29-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:241,0,371:12,3,10,1
chr1	196884258	.	A	T	703.05	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2069;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:77,52:129:99:1056,0,1771:23,54,17,35
chr1	196884290	.	T	A	481.3	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1160;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:627,0,900:4,32,6,23
chr1	196887181	.	T	G	232.5	PASS	AC=2;AF=0.676;AN=2;DP=116;FS=0;FractionInformativeReads=1;set=variant3-variant5-variant6-variant8-variant9-variant13-variant15-variant21-variant25-variant31-variant33-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:507,42,0:0,0,11,3
chr1	196887274	.	G	A	1028.51	PASS	AC=1;AF=0.618;AN=2;DP=842;FractionInformativeReads=1;set=variant-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,16:43:99:387,0,603:17,10,11,5
chr1	196888690	.	T	C	156.22	PASS	AC=2;AF=1;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=45.54;QD=31.24;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:184,15,0:0,0,2,3
chr1	196888703	.	A	G	106.77	PASS	AC=2;AF=1;AN=2;DP=3;FS=0;FractionInformativeReads=1;MQ=32.5;QD=30.46;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,1,2
chr1	196920178	.	C	T	888.92	PASS	AC=2;AF=0.607;AN=2;DP=1962;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant18-variant21-variant22-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,61:62:99:1868,175,0:0,1,21,40
chr1	196926973	.	C	A	418.2	PASS	AC=2;AF=0.607;AN=2;DP=531;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant18-variant21-variant22-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,11:12:26:405,26,0:1,0,10,1
chr1	196946546	.	T	C	566.85	PASS	AC=1;AF=0.542;AN=2;DP=541;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant18-variant21-variant22-variant25-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:853,0,859:21,1,23,0
chr1	196946775	.	T	C	6818.55	PASS	AC=1;AF=0.542;AN=2;DP=7737;set=variant2-variant10-variant18-variant21-variant22-variant25-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:337,297:634:99:6980,0,7944:164,173,144,153
chr1	196951925	.	A	G	588.01	PASS	AC=1;AF=0.5;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant8-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:342,0,264:7,5,10,3
chr1	196977689	.	T	G	1119.19	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=0.815;FractionInformativeReads=1;MQ=60;MQRankSum=0.444;QD=12.44;ReadPosRankSum=1.26;SOR=0.841;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,47:90:99:1147,0,945:26,17,30,17
chr1	196978615	.	T	G	3088.78	PASS	AC=1;AF=0.561;AN=2;DP=7560;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,88:180:99:2151,0,2228:42,50,35,53
chr1	197008597	.	A	C	1046.95	PASS	AC=1;AF=0.621;AN=2;DP=2937;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant31-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,44:94:99:1033,0,1251:19,31,19,25
chr1	197009798	.	A	G	865.92	PASS	AC=1;AF=0.621;AN=2;DP=2190;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant31-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,20:56:99:401,0,1017:14,22,8,12
chr1	197026672	.	A	G	53.48	PASS	AC=2;AF=0.908;AN=2;DP=237;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:172,12,0:0,0,0,4
chr1	197030201	.	T	C	1010.39	PASS	AC=1;AF=0.881;AN=2;DP=1244;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:401,0,536:4,14,1,11
chr1	197031021	.	C	T	1213.96	PASS	AC=1;AF=0.881;AN=2;DP=3000;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:783,0,858:18,17,14,19
chr1	197053373	.	G	A	2040.54	PASS	AC=1;AF=0.881;AN=2;DP=3510;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,48:82:99:1213,0,770:20,14,27,21
chr1	197055925	.	T	C	3347.2	PASS	AC=1;AF=0.881;AN=2;DP=3992;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,31:84:99:655,0,1353:30,23,18,13
chr1	197059878	.	G	A	657.38	PASS	AC=1;AF=0.869;AN=2;DP=521;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:342,0,283:8,0,9,0
chr1	197059892	.	A	G	887.62	PASS	AC=1;AF=0.881;AN=2;DP=709;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:389,0,394:11,0,10,1
chr1	197059928	.	A	G	1448.11	PASS	AC=1;AF=0.881;AN=2;DP=1653;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:590,0,495:14,4,16,7
chr1	197070815	.	T	C	6470.92	PASS	AC=2;AF=0.893;AN=2;DP=8108;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:6043,599,0:0,0,106,94
chr1	197070901	.	A	G	5425.37	PASS	AC=2;AF=0.989;AN=2;DP=7339;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:5902,564,0:0,0,88,100
chr1	197091537	.	A	T	4296.68	PASS	AC=1;AF=0.881;AN=2;DP=5208;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,35:95:99:975,0,1903:36,24,23,12
chr1	197094030	.	C	T	681.26	PASS	AC=1;AF=0.548;AN=2;DP=1010;MQ=60;set=variant-variant3-variant5-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant20-variant23-variant26-variant29-variant31-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:461,0,441:11,3,13,3
chr1	197101621	.	T	C	136.65	PASS	AC=1;AF=0.68;AN=2;DP=171;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant25-variant26-variant28-variant29-variant31-variant35-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:61:187,0,61:0,2,0,5
chr1	197102839	.	A	C	2894.17	PASS	AC=2;AF=0.893;AN=2;DP=3710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2341,212,0:0,0,20,51
chr1	197109042	.	C	T	705.39	PASS	AC=1;AF=0.881;AN=2;DP=869;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:235,0,188:3,4,4,5
chr1	197112533	.	G	A	6641.83	PASS	AC=1;AF=0.881;AN=2;DP=7959;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,104:210:99:2630,0,2638:54,52,49,55
chr1	197113073	.	G	A	1241.31	PASS	AC=1;AF=0.881;AN=2;DP=1495;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,18:20:28:460,0,28:1,1,10,8
chr1	197141243	.	A	C	420.09	PASS	AC=1;AF=0.845;AN=2;DP=1196;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:176,0,673:9,7,6,2
chr1	197141253	.	A	C	206.37	PASS	AC=1;AF=0.5;AN=2;DP=369;MQ=60;set=variant4-variant14-variant17-variant19-variant23-variant25-variant28-variant29-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:411,0,286:7,3,10,9
chr1	197297540	.	A	T	474.8	PASS	AC=1;AF=0.576;AN=2;DP=958;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:509,0,389:11,3,13,3
chr1	197316408	.	T	G	805.82	PASS	AC=1;AF=0.583;AN=2;DP=825;FractionInformativeReads=1;MQ=60;set=variant-variant13-variant18-variant21-variant22-variant24-variant27-variant30-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:729,0,893:23,8,20,6
chr1	197316435	.	T	C	4138.84	PASS	AC=1;AF=0.814;AN=2;DP=4778;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1260,0,1182:30,14,32,17
chr1	197325908	.	T	G	3496.87	PASS	AC=1;AF=0.837;AN=2;DP=4396;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,37:93:99:853,0,1439:28,28,19,18
chr1	197390368	.	A	G	3690.02	PASS	AC=1;AF=0.966;AN=2;DP=5883;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:63,66:129:99:1682,0,1620:30,33,34,32
chr1	197398086	.	A	G	1035.61	PASS	AC=1;AF=0.632;AN=2;DP=2032;MQ=60;set=variant-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,25:55:99:582,0,695:18,12,15,10
chr1	197407886	.	A	AT	2642.25	PASS	AC=1;AF=0.577;AN=2;DP=3151;MQ=60;set=variant5-variant7-variant12-variant14-variant19-variant22-variant25-variant29-variant31-variant33-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:104,109:213:99:2738,0,2597:55,49,61,48
chr1	197407942	.	A	G	7790.81	PASS	AC=1;AF=0.966;AN=2;DP=9351;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:102,99:201:99:2563,0,2514:48,54,46,53
chr1	197408247	.	G	C	9055.11	PASS	AC=1;AF=0.966;AN=2;DP=11771;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:120,142:262:99:3837,0,3338:59,61,65,77
chr1	197408614	.	G	A	10555.6	PASS	AC=2;AF=0.989;AN=2;DP=14414;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,258:258:99:8402,774,0:0,0,134,124
chr1	197408660	.	C	T	3939.26	PASS	AC=1;AF=0.577;AN=2;DP=4034;MQ=60;set=variant5-variant7-variant12-variant14-variant19-variant22-variant25-variant29-variant31-variant33-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:142,134:276:99:3519,0,3886:81,61,69,65
chr1	197409070	.	C	T	3264.07	PASS	AC=1;AF=0.966;AN=2;DP=3737;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,41:97:99:1191,0,1867:17,39,15,26
chr1	197410295	.	C	A	8698.85	PASS	AC=1;AF=0.966;AN=2;DP=10437;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:97,96:193:99:2459,0,2640:54,43,54,42
chr1	197410348	.	T	C	10142.1	PASS	AC=1;AF=0.966;AN=2;DP=11851;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:122,120:242:99:3089,0,3136:64,58,70,50
chr1	197410789	.	CTTTTTT	CTTTTTTT,CTTTTT,CTTTT,CTTTTTTTTTTTTTTTTTTTTTT,CTTTTTTTT,C	32.5	PASS	AC=1,0,0,0,0,0;AF=0.25,0.1,0.075,0.025,0.05,0.025;AN=2;DP=785;set=filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant8-variant11-filterInvariant16-variant17-variant18-variant19-filterInvariant20-variant23-filterInvariant27-variant31-filterInvariant32-variant35-filterInvariant36-variant40-filterInvariant41-variant44	GT:DP:GQ:SB	0/1:15:65:1,6,2,6
chr1	197412251	.	TAA	TA,T	127.49	PASS	AC=1,0;AF=0.549,0.159;AN=2;DP=828;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:10:23:2,1,4,3
chr1	197413165	.	A	T	9852.2	PASS	AC=1;AF=0.577;AN=2;DP=5575;set=variant5-variant7-variant12-variant14-variant19-variant22-variant25-variant29-variant31-variant33-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:227,207:434:99:7933,0,10798:114,113,102,105
chr1	197413166	.	C	A	9852.2	PASS	AC=1;AF=0.577;AN=2;DP=5558;set=variant5-variant7-variant12-variant14-variant19-variant22-variant25-variant29-variant31-variant33-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:226,207:433:99:7933,0,10798:112,114,102,105
chr1	197413628	.	C	T	15332.1	PASS	AC=1;AF=0.966;AN=2;DP=17758;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:240,169:409:99:4122,0,6310:128,112,96,73
chr1	197414036	.	T	TACAC,TAC,TACACAC	935.4	PASS	AC=1,1,0;AF=0.886,0.057,0.023;AN=2;DP=1265;FS=0;set=Intersection	GT:DP:GQ:SB	2/1:11:99:0,0,1,10
chr1	197446702	.	G	T	604.15	PASS	AC=1;AF=0.648;AN=2;DP=1653;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:607,0,624:15,9,16,8
chr1	197473969	.	A	T	4832.64	PASS	AC=2;AF=0.977;AN=2;DP=7796;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4101,458,0:0,0,64,89
chr1	197474565	.	A	G	6889.41	PASS	AC=2;AF=0.977;AN=2;DP=7689;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:6885,573,0:0,0,75,116
chr1	197474817	.	A	G	7584.86	PASS	AC=2;AF=0.989;AN=2;DP=8008;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4653,416,0:0,0,63,76
chr1	197474845	.	A	ATTAAC	8364.44	PASS	AC=2;AF=0.977;AN=2;DP=7322;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:5047,339,0:0,0,57,51
chr1	197475055	.	CAATCT	C	4967.96	PASS	AC=2;AF=0.977;AN=2;DP=5619;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:5123,344,0:0,0,48,66
chr1	197475085	.	T	C	3400.05	PASS	AC=2;AF=0.977;AN=2;DP=4691;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3329,309,0:0,0,47,56
chr1	197475908	.	C	A	6865.16	PASS	AC=2;AF=0.977;AN=2;DP=11090;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,240:241:99:7487,712,0:0,1,113,127
chr1	197476279	.	CATTATTATTATTATT	C,CATTATT,CATTATTATT,CATT	149.44	PASS	AC=2,0,0,0;AF=0.939,0.012,0.012,0.037;AN=2;DP=846;FS=0;MQ=60;MQRankSum=0.751;ReadPosRankSum=0.751;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:11:38:0,0,3,8
chr1	197477237	.	T	C	13488.2	PASS	AC=2;AF=0.977;AN=2;DP=17749;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,403:403:99:12507,1206,0:0,0,194,209
chr1	197477448	.	C	T	4626.98	PASS	AC=1;AF=0.653;AN=2;DP=12225;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:188,144:332:99:3255,0,4566:82,106,67,77
chr1	197477768	.	A	G	842.32	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=0.999;FractionInformativeReads=1;MQ=60;MQRankSum=-0.035;QD=13.59;ReadPosRankSum=-3.034;SOR=0.925;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:871,0,969:20,14,18,10
chr1	197478756	.	ATT	AT,A	371.25	PASS	AC=1,1;AF=0.524,0.146;AN=2;DP=1849;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	2/1:25:84:4,0,16,5
chr1	197479378	.	C	A	9486.28	PASS	AC=2;AF=0.977;AN=2;DP=12728;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,288:288:99:8846,861,0:0,0,110,178
chr1	197482167	.	C	G	137.64	PASS	AC=2;AF=0.966;AN=2;DP=509;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:670,54,0:0,0,3,15
chr1	197510025	.	G	T	903.22	PASS	AC=2;AF=0.977;AN=2;DP=1166;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1041,81,0:0,0,23,4
chr1	197510299	.	G	A	634.06	PASS	AC=2;AF=1;AN=2;DP=593;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:527,42,0:0,0,2,12
chr1	197515253	.	ATGTTCAG	A	682.97	PASS	AC=2;AF=1;AN=2;DP=531;FS=0;MQ=60;MQRankSum=0.474;ReadPosRankSum=1.107;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:25:361,25,0:0,0,1,7
chr1	197515715	.	G	A	317.08	PASS	AC=1;AF=0.841;AN=2;DP=369;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:276,0,295:4,1,6,1
chr1	197515734	.	A	G	50.5	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:345,0,419:8,2,8,1
chr1	197515777	.	A	T	1676.77	PASS	AC=1;AF=0.833;AN=2;DP=1795;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:511,0,637:15,8,14,6
chr1	197521662	.	G	A	1267.06	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=1.881;FractionInformativeReads=1;MQ=60;MQRankSum=0.842;QD=16.04;ReadPosRankSum=0.714;SOR=0.442;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,43:79:99:1295,0,1082:14,22,20,23
chr1	197521810	.	C	G	2507.53	PASS	AC=1;AF=0.577;AN=2;DP=3126;MQ=60;set=variant5-variant12-variant14-variant19-variant20-variant22-variant25-variant29-variant31-variant33-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:113,108:221:99:2904,0,2967:69,44,67,41
chr1	197521877	.	T	C	11904.3	PASS	AC=1;AF=0.841;AN=2;DP=14901;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:167,169:336:99:3925,0,4016:91,76,95,74
chr1	197576307	.	A	AT	993.9	PASS	AC=2;AF=0.989;AN=2;DP=1531;MQ=60;MQRankSum=0.655;ReadPosRankSum=-0.267;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:72:805,72,0:0,0,6,17
chr1	197643355	.	C	T	85.63	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.851;QD=8.56;ReadPosRankSum=-1.453;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:114,0,199:2,3,2,3
chr1	197741951	.	C	A	1802.45	PASS	AC=2;AF=0.989;AN=2;DP=3083;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:1894,222,0:0,0,42,32
chr1	197742171	.	C	T	621.07	PASS	AC=1;AF=0.845;AN=2;DP=928;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:294,0,354:0,9,1,8
chr1	197872019	.	G	T	2373.25	PASS	AC=1;AF=0.625;AN=2;DP=2996;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant23-variant24-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,41:99:99:1100,0,1409:23,35,17,24
chr1	197874949	.	T	C	1284.52	PASS	AC=1;AF=0.56;AN=2;DP=2695;MQ=60;set=variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant35-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,54:113:99:1387,0,1391:31,28,31,23
chr1	197876533	.	C	A	6356.34	PASS	AC=2;AF=0.977;AN=2;DP=8310;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5397,522,0:0,0,86,88
chr1	197887187	.	G	A	280.93	PASS	AC=1;AF=0.5;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant10-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:614,0,317:5,5,13,6
chr1	197890387	.	C	T	472.56	PASS	AC=1;AF=0.5;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant10-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:355,0,334:9,2,11,5
chr1	197890422	.	C	G	1010.75	PASS	AC=2;AF=0.943;AN=2;DP=2510;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1637,150,0:0,0,35,15
chr1	197890802	.	T	C	2644.28	PASS	AC=1;AF=0.559;AN=2;DP=3721;MQ=60;set=variant5-variant6-variant8-variant9-variant15-variant17-variant20-variant25-variant26-variant27-variant28-variant34-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,97:198:99:2548,0,2672:40,61,42,55
chr1	197900023	.	C	T	11924.6	PASS	AC=2;AF=1;AN=2;DP=14356;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,301:301:99:9482,904,0:0,0,158,143
chr1	197900589	.	A	C	8045.38	PASS	AC=2;AF=0.943;AN=2;DP=9781;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,212:212:99:6938,635,0:0,0,90,122
chr1	197902814	.	T	C	1397.85	PASS	AC=1;AF=0.65;AN=2;DP=2530;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,52:94:99:1589,0,1186:13,29,20,32
chr1	197902871	.	CAAA	CA,C,CAA,CAAAAA	110.71	PASS	AC=1,1,0,0;AF=0.693,0.08,0.068,0.011;AN=2;DP=1778;set=Intersection	GT:DP:GQ:SB	2/1:21:99:0,0,11,10
chr1	197903352	.	T	G	6885.96	PASS	AC=2;AF=0.943;AN=2;DP=8617;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4823,444,0:0,0,83,65
chr1	197903389	.	GT	G	7066.62	PASS	AC=1;AF=0.667;AN=2;DP=5572;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,91:170:99:2323,0,1934:49,30,48,43
chr1	197903912	.	G	GT	2074.12	PASS	AC=1;AF=0.579;AN=2;DP=3614;MQ=60;set=variant5-variant6-variant8-variant9-variant10-variant15-variant17-variant20-variant25-variant26-variant27-variant28-variant34-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,86:161:99:2131,0,1810:29,46,34,52
chr1	198225658	.	T	C	1722.93	PASS	AC=1;AF=0.5;AN=2;DP=1246;MQ=60;set=variant10-variant19-variant25-variant29-variant33-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,54:103:99:1543,0,1369:16,33,18,36
chr1	198262219	.	A	C	633.04	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=1.106;FractionInformativeReads=1;MQ=60;MQRankSum=0.362;QD=12.66;ReadPosRankSum=2.081;SOR=0.96;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:661,0,483:10,12,11,17
chr1	198288709	.	A	G	2896.93	PASS	AC=2;AF=0.615;AN=2;DP=7288;MQ=60;set=variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant19-variant21-variant22-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,247:247:99:8538,741,0:0,0,151,96
chr1	198289514	.	G	T	684.37	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=6.094;FractionInformativeReads=1;MQ=60;MQRankSum=-1.951;QD=14.56;ReadPosRankSum=-0.075;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:713,0,529:11,11,8,17
chr1	198664102	.	G	A	2405.3	PASS	AC=1;AF=0.542;AN=2;DP=2437;MQ=60;set=variant4-variant6-variant7-variant14-variant17-variant29-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,96:203:99:2348,0,2603:43,64,40,56
chr1	198701289	.	T	C	106.77	PASS	AC=2;AF=0.804;AN=2;DP=196;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant15-variant17-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:154,12,0:0,0,4,0
chr1	198717218	.	GTT	GTTT,G,GTTTT,GT	210.43	PASS	AC=1,0,0,0;AF=0.368,0.074,0.029,0.103;AN=2;DP=1478;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:20:99:4,5,6,5
chr1	200008644	.	C	G	659.73	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.565;QD=16.09;ReadPosRankSum=1.195;SOR=0.749;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:688,0,536:14,4,18,5
chr1	200143064	.	CTTTTT	CTTTT,CT,CTTT,C	107.95	PASS	AC=0,1,0,0;AF=0.175,0.375,0.025,0.013;AN=2;DP=1044;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-filterInvariant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:17:99:6,0,8,3
chr1	200143281	.	C	T	1027.05	PASS	AC=1;AF=0.571;AN=2;DP=2929;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant13-variant14-variant16-variant18-variant19-variant23-variant24-variant25-variant26-variant33-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,69:128:99:1698,0,1537:31,28,37,32
chr1	200143442	.	T	C	729.36	PASS	AC=2;AF=0.736;AN=2;DP=2040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2237,204,0:0,0,30,38
chr1	200143844	.	C	G	1126.97	PASS	AC=1;AF=0.78;AN=2;DP=3990;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,48:92:99:1419,0,1442:26,18,32,16
chr1	200144089	.	T	G	5914.98	PASS	AC=1;AF=0.78;AN=2;DP=16411;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:197,182:379:99:4432,0,4891:101,96,94,88
chr1	200145509	.	G	A	1285.84	PASS	AC=1;AF=0.744;AN=2;DP=3356;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:1051,0,1292:19,22,16,21
chr1	200145533	.	G	A	1275.52	PASS	AC=1;AF=0.744;AN=2;DP=3343;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:1113,0,1268:23,17,19,20
chr1	200145662	.	G	T	1740.43	PASS	AC=1;AF=0.744;AN=2;DP=6228;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,62:139:99:1321,0,1839:36,41,28,34
chr1	200145893	.	A	G	722.85	PASS	AC=1;AF=0.78;AN=2;DP=2572;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:587,0,676:17,10,12,9
chr1	200146493	.	GA	G	2495.85	PASS	AC=1;AF=0.716;AN=2;DP=8992;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,108:221:99:3203,0,4119:42,71,34,74
chr1	200146495	.	AT	A,ATT	2167.48	PASS	AC=0,1;AF=0.429,0.071;AN=2;DP=1620;MQ=60;set=variant5-variant7-variant12-variant13-variant20-variant29-variant41	GT:DP:GQ:SB	0/2:206:99:35,76,34,61
chr1	200182654	.	T	C	1613.59	PASS	AC=2;AF=0.932;AN=2;DP=1979;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:99:1500,102,0:0,0,18,14
chr1	200182664	.	C	T	402.72	PASS	AC=2;AF=0.661;AN=2;DP=1348;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant20-variant21-variant23-variant25-variant26-variant29-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1500,102,0:0,0,20,14
chr1	200182721	.	G	C	672.2	PASS	AC=1;AF=0.5;AN=2;DP=584;MQ=60;set=variant-variant6-variant15-variant21-variant25-variant26-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:1032,0,733:14,6,16,10
chr1	200182725	.	G	A	666.42	PASS	AC=1;AF=0.5;AN=2;DP=601;MQ=60;set=variant-variant6-variant15-variant21-variant25-variant26-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:1032,0,751:14,6,16,10
chr1	200182732	.	A	G	663.41	PASS	AC=1;AF=0.5;AN=2;DP=610;MQ=60;set=variant-variant6-variant15-variant21-variant25-variant26-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:1032,0,751:14,6,16,10
chr1	200182733	.	C	T,G	746.91	PASS	AC=1,1;AF=0.5,0.063;AN=2;DP=612;MQ=60;set=variant-variant6-variant15-variant21-variant25-variant26-variant35-variant41	GT:DP:GQ:SB	1/2:46:99:1,0,29,16
chr1	200182834	.	A	G	538.45	PASS	AC=1;AF=0.643;AN=2;DP=3144;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant20-variant21-variant23-variant25-variant26-variant29-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,58:121:99:1492,0,1505:38,25,34,24
chr1	200183398	.	C	A	460.73	PASS	AC=2;AF=0.661;AN=2;DP=2351;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant20-variant21-variant23-variant25-variant26-variant29-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2741,256,0:0,0,29,57
chr1	200183460	.	C	T	175.33	PASS	AC=1;AF=0.604;AN=2;DP=985;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant20-variant21-variant23-variant25-variant26-variant29-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,17:42:99:455,0,748:10,15,6,11
chr1	200311868	.	C	G	1136.92	PASS	AC=1;AF=0.767;AN=2;DP=4604;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,46:106:99:1136,0,1491:32,28,24,22
chr1	200312546	.	CAA	CA,C	254	PASS	AC=1,1;AF=0.81,0.071;AN=2;DP=782;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	2/1:15:99:0,0,2,13
chr1	200342046	.	A	C	1292.39	PASS	AC=1;AF=0.64;AN=2;DP=760;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant18-variant19-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:561,0,596:17,4,14,4
chr1	200342484	.	T	TA,TAA	106.64	PASS	AC=2,0;AF=0.776,0.034;AN=2;DP=287;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant36-variant37-variant38-variant41-variant43	GT:DP:GQ:SB	1/1:3:9:0,0,0,3
chr1	200342825	.	C	A	443.99	PASS	AC=1;AF=0.767;AN=2;DP=2346;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,26:63:99:616,0,1060:20,17,15,11
chr1	200521131	.	T	C	4147.85	PASS	AC=2;AF=0.875;AN=2;DP=12887;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,288:288:99:8583,862,0:0,0,155,133
chr1	200521291	.	TTTC	T	2272.78	PASS	AC=1;AF=0.606;AN=2;DP=5203;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,64:146:99:2294,0,3323:35,47,22,42
chr1	200521412	.	G	A	1512.57	PASS	AC=1;AF=0.718;AN=2;DP=5039;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,51:106:99:1260,0,1428:27,28,28,23
chr1	200521442	.	T	A	2690.05	PASS	AC=1;AF=0.5;AN=2;DP=909;MQ=60;set=variant7-variant11-variant17-variant27-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,66:123:99:1857,0,1380:33,24,36,30
chr1	200522039	.	T	G	245.29	PASS	AC=2;AF=0.767;AN=2;DP=816;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:726,51,0:0,0,0,17
chr1	200522043	.	TTTTATTTATTTATTTATTTA	TTTTA,T,TTTTATTTA,TTTTATTTATTTA	193.63	PASS	AC=2,0,0,0;AF=0.5,0.147,0.074,0.029;AN=2;DP=583;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:14:48:0,0,0,14
chr1	200522269	.	G	A	228.07	PASS	AC=1;AF=0.743;AN=2;DP=563;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:239,0,412:10,0,7,3
chr1	200522285	.	C	T	139.76	PASS	AC=1;AF=0.5;AN=2;DP=153;FractionInformativeReads=1;MQ=60;set=variant7-variant11-variant17-variant27-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:404,0,423:7,4,12,1
chr1	200522351	.	A	T	676.11	PASS	AC=1;AF=0.782;AN=2;DP=2294;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,25:58:99:515,0,897:19,14,13,12
chr1	200522566	.	G	C	1447.42	PASS	AC=1;AF=0.606;AN=2;DP=3701;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,35:85:99:1014,0,1280:26,24,16,19
chr1	200523514	.	A	G	233.9	PASS	AC=1;AF=0.803;AN=2;DP=401;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:178,0,313:8,2,5,1
chr1	200534248	.	C	T	1701.58	PASS	AC=1;AF=0.782;AN=2;DP=4466;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,52:93:99:1284,0,998:25,16,31,21
chr1	200538885	.	C	T	319.54	PASS	AC=2;AF=0.884;AN=2;DP=774;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:843,72,0:0,0,18,6
chr1	200538962	.	G	A	325.32	PASS	AC=1;AF=0.55;AN=2;DP=348;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant11-variant17-variant27-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,21:46:99:474,0,645:15,10,12,9
chr1	200544650	.	TACAC	TAC,T	268.53	PASS	AC=0,1;AF=0.316,0.237;AN=2;DP=448;set=variant-variant2-variant3-variant7-variant9-variant11-variant14-variant17-variant18-variant21-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:20:99:7,0,9,4
chr1	200549590	.	T	C	34.7	PASS	AC=1;AF=0.797;AN=2;DP=329;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:24:166,0,24:0,1,1,4
chr1	200550243	.	GAAAAAAA	GAAAAAAAAAA,GAAAAAAAAA,GAAAAAAAAAAAAAAAAAA,GAAAAAAAA,G,GAAAAAAAAAAAAA,GAAAAAAAAAAAAAA,GAAAAAAAAAAAA	184.51	PASS	AC=0,0,0,0,0,0,1,0;AF=0.25,0.182,0.023,0.068,0.091,0.023,0.068,0.023;AN=2;DP=151;FS=0;set=variant-variant4-variant5-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant28-variant33-variant36-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	0/7:7:99:3,0,4,0
chr1	200555203	.	G	T	168.2	PASS	AC=1;AF=0.583;AN=2;DP=158;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant14-variant15-variant17-variant27-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:99:278,0,100:3,0,7,1
chr1	200555482	.	C	T	80.65	PASS	AC=1;AF=0.606;AN=2;DP=488;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:99:349,0,125:0,4,2,9
chr1	200558363	.	T	C	829.21	PASS	AC=2;AF=0.875;AN=2;DP=4249;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2789,290,0:0,0,54,43
chr1	200561456	.	T	C	288.97	PASS	AC=1;AF=0.577;AN=2;DP=174;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant11-variant14-variant15-variant17-variant34-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:252,0,139:0,5,2,7
chr1	200567596	.	T	G	205.65	PASS	AC=1;AF=0.559;AN=2;DP=205;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant11-variant14-variant17-variant18-variant21-variant27-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:193,0,235:0,6,1,5
chr1	200569392	.	C	A	1141.94	PASS	AC=2;AF=0.977;AN=2;DP=2799;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2139,189,0:0,0,38,25
chr1	200574959	.	T	C	265.45	PASS	AC=1;AF=0.559;AN=2;DP=316;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant11-variant14-variant17-variant18-variant21-variant27-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:284,0,345:9,3,7,4
chr1	200575744	.	CTAAA	C	514.51	PASS	AC=1;AF=0.556;AN=2;DP=657;MQ=60;set=variant2-variant3-variant7-variant11-variant14-variant17-variant18-variant21-variant27-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:770,0,860:16,1,15,6
chr1	200575794	.	A	G	922.8	PASS	AC=1;AF=0.556;AN=2;DP=1448;set=variant2-variant3-variant7-variant11-variant14-variant17-variant18-variant21-variant27-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,40:76:99:1208,0,1050:26,10,29,11
chr1	200578093	.	G	A	831.74	PASS	AC=2;AF=0.977;AN=2;DP=1748;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1093,122,0:0,0,18,23
chr1	200583380	.	T	G	607.86	PASS	AC=1;AF=0.553;AN=2;DP=680;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant11-variant14-variant17-variant18-variant21-variant27-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:402,0,421:11,5,8,7
chr1	200589813	.	C	A	383.39	PASS	AC=1;AF=0.613;AN=2;DP=1857;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant11-variant13-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,31:74:99:695,0,1179:15,28,13,18
chr1	200593274	.	G	C	291.22	PASS	AC=1;AF=0.596;AN=2;DP=326;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant11-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:229,0,152:4,3,6,1
chr1	200593325	.	C	T	103.26	PASS	AC=1;AF=0.617;AN=2;DP=642;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-filterInvariant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:267,0,263:6,6,8,4
chr1	200593418	.	T	TG	507.99	PASS	AC=1;AF=0.617;AN=2;DP=1177;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:673,0,366:6,6,8,11
chr1	200593468	.	T	A	604.65	PASS	AC=1;AF=0.617;AN=2;DP=1080;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,18:27:99:461,0,162:4,5,7,11
chr1	200593535	.	CTAT	C,CTATTATTATTATTAT,CTATTATTATTATTATTAT	485.55	PASS	AC=1,0,0;AF=0.638,0.034,0.017;AN=2;DP=490;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:6:27:0,1,1,4
chr1	200593551	.	T	C	494.4	PASS	AC=1;AF=0.661;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:24:229,0,24:0,1,1,5
chr1	200593562	.	A	T	472.64	PASS	AC=1;AF=0.679;AN=2;DP=251;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:30:165,0,30:0,1,0,3
chr1	200594240	.	G	A	1679.22	PASS	AC=2;AF=1;AN=2;DP=1673;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1605,131,0:0,0,7,37
chr1	200610525	.	TA	T	128.3	PASS	AC=2;AF=0.923;AN=2;DP=450;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:210,24,0:0,0,1,7
chr1	200618238	.	T	C	822.66	PASS	AC=2;AF=0.943;AN=2;DP=2846;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1256,138,0:0,0,24,22
chr1	200619478	.	C	A	187.9	PASS	AC=2;AF=1;AN=2;DP=541;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:343,24,0:0,0,8,0
chr1	200619530	.	T	C	1234.47	PASS	AC=2;AF=1;AN=2;DP=1617;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1135,87,0:0,0,24,5
chr1	200638847	.	A	G	334.7	PASS	AC=1;AF=0.667;AN=2;DP=1056;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:472,0,390:11,8,11,8
chr1	200639023	.	TGCGGA	T,TGCGGGGCGGAGCGGA,TGCGGGGCGGAGCGGAGCGGA,TGCGGGGCGGAGCGGAGCGGAGCGGAGCGGA,TGCGGGGCGGA	1395.66	PASS	AC=0,1,0,0,0;AF=0.086,0.414,0.017,0.017,0.017;AN=2;DP=2417;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant27-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:77:99:18,23,21,15
chr1	200639040	.	CGGAGCGTAGA	C	355.37	PASS	AC=1;AF=0.667;AN=2;DP=2467;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:1455,0,1554:20,20,16,22
chr1	200639047	.	T	G	3381.86	PASS	AC=1;AF=0.571;AN=2;DP=2202;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:1324,0,1488:16,22,20,16
chr1	200639050	.	A	C	3381.48	PASS	AC=1;AF=0.571;AN=2;DP=2174;MQ=60;set=variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:1324,0,1488:16,22,20,16
chr1	200639156	.	G	A	96.25	PASS	AC=1;AF=0.677;AN=2;DP=496;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:192,0,316:1,8,3,4
chr1	200708748	.	A	AGCG	442.92	PASS	AC=1;AF=0.5;AN=2;DP=279;MQ=60;set=variant13-variant17-variant26-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:911,0,701:10,8,13,10
chr1	200776641	.	C	T	887.92	PASS	AC=1;AF=0.5;AN=2;DP=540;FractionInformativeReads=1;MQ=60;set=variant13-variant17-variant26-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1076,0,1231:25,29,22,25
chr1	200802045	.	C	T	63.99	PASS	AC=1;AF=0.5;AN=2;DP=32;FractionInformativeReads=1;MQ=60;set=variant13-variant17-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:75:75,0,136:0,4,2,2
chr1	200811313	.	A	AT	117.56	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0;MQ=60;set=variant13-variant17-variant26-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:52:192,0,52:0,3,0,8
chr1	200816521	.	G	T	631.52	PASS	AC=2;AF=0.778;AN=2;DP=914;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:532,48,0:0,0,3,13
chr1	200816658	.	T	C	623.01	PASS	AC=2;AF=1;AN=2;DP=592;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:658,51,0:0,0,14,3
chr1	200824978	.	C	T	130.7	PASS	AC=1;AF=0.661;AN=2;DP=263;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:99:369,0,343:3,0,6,3
chr1	200824980	.	C	T	130.7	PASS	AC=1;AF=0.643;AN=2;DP=263;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:99:369,0,343:3,0,6,3
chr1	200824981	.	C	T	130.7	PASS	AC=1;AF=0.643;AN=2;DP=269;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:99:369,0,343:3,0,6,3
chr1	200828267	.	A	T	4325.83	PASS	AC=1;AF=0.536;AN=2;DP=3746;MQ=60;set=variant-variant5-variant12-variant13-variant16-variant17-variant18-variant25-variant26-variant30-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:117,120:237:99:3165,0,3438:89,28,83,37
chr1	200842005	.	T	A	2900.7	PASS	AC=1;AF=0.661;AN=2;DP=1581;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,26:38:99:1045,0,766:9,3,18,8
chr1	200842006	.	C	G	2900.7	PASS	AC=1;AF=0.661;AN=2;DP=1631;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,26:38:99:1045,0,766:9,3,18,8
chr1	200843305	.	G	T	3143.46	PASS	AC=1;AF=0.685;AN=2;DP=3142;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,80:124:99:2237,0,1088:16,28,31,49
chr1	200867492	.	C	G	901.24	PASS	AC=1;AF=0.587;AN=2;DP=1418;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant13-variant15-variant17-variant20-variant21-variant24-variant28-variant30-variant31-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,39:75:99:1061,0,904:16,20,21,18
chr1	200877786	.	T	C	51.24	PASS	AC=2;AF=0.625;AN=2;DP=678;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:806,81,0:0,0,17,10
chr1	200880978	.	C	T	1054.2	PASS	AC=2;AF=0.808;AN=2;DP=1789;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1025,84,0:0,0,11,17
chr1	200881172	.	C	A	995.71	PASS	AC=2;AF=0.694;AN=2;DP=3968;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3446,351,0:0,0,71,47
chr1	200939217	.	A	G	932.66	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=5.002;FractionInformativeReads=1;MQ=60;MQRankSum=-1.11;QD=8.56;ReadPosRankSum=-0.226;SOR=0.952;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,38:109:99:961,0,1961:33,38,22,16
chr1	200939642	.	C	T	897.13	PASS	AC=1;AF=0.583;AN=2;DP=1173;MQ=60;set=variant2-variant5-variant7-variant11-variant14-variant16-variant20-variant22-variant23-variant28-variant29-variant32-variant33-variant34-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:587,0,880:21,15,13,15
chr1	200941549	.	T	C	2295.06	PASS	AC=2;AF=1;AN=2;DP=3775;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2756,257,0:0,0,50,36
chr1	200943793	.	CAGGA	C	907.85	PASS	AC=2;AF=1;AN=2;DP=3107;FS=0;MQ=60;MQRankSum=0.976;ReadPosRankSum=0.682;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:3007,202,0:0,0,44,23
chr1	200944840	.	T	G	337.45	PASS	AC=1;AF=0.825;AN=2;DP=710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:352,0,202:0,7,3,8
chr1	200945854	.	T	C	1206.63	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.906;QD=14.03;ReadPosRankSum=1.956;SOR=0.665;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,50:86:99:1235,0,834:17,19,24,26
chr1	200952336	.	C	G	205.45	PASS	AC=1;AF=0.577;AN=2;DP=361;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:500,0,451:5,10,8,9
chr1	200954186	.	T	C	258.14	PASS	AC=1;AF=0.577;AN=2;DP=239;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:362,0,460:4,11,0,11
chr1	200956288	.	A	G	551.82	PASS	AC=1;AF=0.577;AN=2;DP=1372;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,42:104:99:962,0,1411:31,31,23,19
chr1	200956404	.	AT	A	77.22	DRAGENHardINDEL	AC=1;AF=0.5;AN=2;DP=42;FS=1.864;FractionInformativeReads=0.786;MQ=60;MQRankSum=2.079;QD=1.84;ReadPosRankSum=-1.575;SOR=0.243;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:25,8:33:99:114,0,553:6,19,3,5
chr1	200957691	.	G	C	397.46	PASS	AC=1;AF=0.577;AN=2;DP=482;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,26:35:99:774,0,387:8,1,13,13
chr1	200957697	.	A	G	329.79	PASS	AC=1;AF=0.583;AN=2;DP=408;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant11-variant14-variant16-variant20-variant22-variant23-variant28-variant29-variant32-variant33-variant34-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,12:38:99:285,0,1087:14,12,10,2
chr1	200958111	.	A	C	1130.76	PASS	AC=1;AF=0.577;AN=2;DP=1038;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,46:83:99:1141,0,997:19,18,20,26
chr1	200959052	.	T	G	240.59	PASS	AC=1;AF=0.577;AN=2;DP=831;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:857,0,904:19,18,21,11
chr1	200959302	.	G	A	925	PASS	AC=1;AF=0.577;AN=2;DP=2573;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,115:208:99:2842,0,2223:48,45,52,63
chr1	200960741	.	G	A	207.15	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=1.603;FractionInformativeReads=1;MQ=60;MQRankSum=-1.692;QD=8.29;ReadPosRankSum=-1.803;SOR=1.085;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:235,0,336:9,6,7,3
chr1	200960886	.	C	T	505.63	PASS	AC=1;AF=0.577;AN=2;DP=682;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,15:44:99:363,0,747:16,13,6,9
chr1	200960915	.	T	C	451.46	PASS	AC=1;AF=0.577;AN=2;DP=637;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant15-variant17-variant19-variant22-variant24-variant26-variant27-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:485,0,595:13,9,8,13
chr1	200965601	.	G	A	830.74	PASS	AC=1;AF=0.6;AN=2;DP=1568;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:651,0,475:7,13,11,13
chr1	200967490	.	A	G	117.84	PASS	AC=2;AF=0.617;AN=2;DP=908;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1200,99,0:0,0,24,9
chr1	200969124	.	G	A	695.99	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=2.368;FractionInformativeReads=1;MQ=60;MQRankSum=1.179;QD=11.05;ReadPosRankSum=-1.372;SOR=1.121;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,29:63:99:724,0,936:11,23,7,22
chr1	200969140	.	C	T	690.52	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.168;QD=11.7;ReadPosRankSum=-1.229;SOR=0.559;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:719,0,966:8,25,7,19
chr1	200969983	.	T	C	289.35	PASS	AC=1;AF=0.591;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant15-variant17-variant19-variant22-variant26-variant27-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:305,0,267:2,6,3,8
chr1	201008582	.	T	TG	151.64	PASS	AC=2;AF=0.679;AN=2;DP=486;MQ=60;set=variant-variant2-variant5-variant7-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:57:618,57,0:0,0,15,3
chr1	201009083	.	AGTAGCTCT	A	2124.81	PASS	AC=1;AF=0.5;AN=2;DP=152;FS=2.988;FractionInformativeReads=0.98;MQ=60;MQRankSum=0.613;QD=13.98;ReadPosRankSum=4.074;SOR=0.97;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:91,58:149:99:2162,0,8679:45,46,25,33
chr1	201009556	.	A	G	1496.24	PASS	AC=1;AF=0.614;AN=2;DP=1416;MQ=60;set=variant2-variant5-variant7-variant11-variant14-variant16-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:808,0,803:14,14,13,12
chr1	201009897	.	T	C	828.78	PASS	AC=2;AF=1;AN=2;DP=1696;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:881,69,0:0,0,6,17
chr1	201009907	.	G	A	122.58	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=5.825;FractionInformativeReads=1;MQ=60;MQRankSum=1.376;QD=7.66;ReadPosRankSum=-0.741;SOR=0.074;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:151,0,314:1,8,3,4
chr1	201010862	.	T	C	337.64	PASS	AC=2;AF=0.667;AN=2;DP=794;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:996,81,0:0,0,6,21
chr1	201012597	.	G	A	1605.04	PASS	AC=1;AF=0.5;AN=2;DP=1918;MQ=60;set=variant5-variant7-variant11-variant14-variant20-variant22-variant28-variant32-variant33-variant34-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,80:136:99:1916,0,1534:22,34,36,44
chr1	201016646	.	C	T	977.41	PASS	AC=1;AF=0.545;AN=2;DP=1021;MQ=60;set=variant-variant10-variant15-variant17-variant19-variant22-variant23-variant26-variant27-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,28:77:99:720,0,1421:33,16,19,9
chr1	201020105	.	A	G	1678.17	PASS	AC=1;AF=0.768;AN=2;DP=3544;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,32:72:99:684,0,1236:27,13,18,14
chr1	201020351	.	G	T	618.57	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=1.07;FractionInformativeReads=1;MQ=60;MQRankSum=-1.183;QD=9.23;ReadPosRankSum=0.242;SOR=0.463;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,24:67:99:647,0,1719:12,31,8,16
chr1	201020360	.	G	A	871.98	PASS	AC=1;AF=0.5;AN=2;DP=1105;MQ=60;set=variant5-variant7-variant11-variant14-variant20-variant22-variant28-variant32-variant33-variant34-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,40:61:99:1146,0,762:7,14,12,28
chr1	201020574	.	T	G	222.72	PASS	AC=1;AF=0.789;AN=2;DP=384;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:111,0,197:0,5,0,3
chr1	201021619	.	C	G	323.43	PASS	AC=1;AF=0.563;AN=2;DP=533;MQ=60;set=variant-variant10-variant14-variant15-variant17-variant19-variant22-variant23-variant25-variant26-variant27-variant30-variant31-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:659,0,556:15,0,17,1
chr1	201022387	.	C	T	1945.68	PASS	AC=1;AF=0.5;AN=2;DP=178;FS=0.551;FractionInformativeReads=0.994;MQ=60;MQRankSum=1.058;QD=10.93;ReadPosRankSum=-0.098;SOR=0.718;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:89,88:177:99:1974,0,2092:45,44,43,45
chr1	201022413	.	G	A	1856.14	PASS	AC=1;AF=0.5;AN=2;DP=157;FS=4.705;FractionInformativeReads=1;MQ=60;MQRankSum=1.301;QD=11.82;ReadPosRankSum=2.72;SOR=0.932;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,76:157:99:1884,0,2061:42,39,33,43
chr1	201022534	.	A	C	1164.99	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.711;QD=16.64;ReadPosRankSum=0.828;SOR=0.681;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,36:70:99:1193,0,862:15,19,16,20
chr1	201022779	.	C	T	305.98	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=1.449;FractionInformativeReads=1;MQ=60;MQRankSum=0.686;QD=10.55;ReadPosRankSum=0.288;SOR=1.061;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:334,0,258:6,6,7,10
chr1	201031307	.	A	C	152.85	PASS	AC=1;AF=0.686;AN=2;DP=780;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:382,0,447:1,12,1,10
chr1	201044577	.	A	C	197.79	PASS	AC=1;AF=0.5;AN=2;DP=1396;MQ=60;set=variant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant11-variant13-variant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-filterInvariant22-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant28-variant29-variant30-filterInvariant32-variant33-filterInvariant35-filterInvariant36-filterInvariant37-variant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:441,0,2381:3,16,14,0
chr1	201044583	.	T	C	58.98	PASS	AC=1;AF=0.5;AN=2;DP=1848;MQ=60;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-variant8-filterInvariant9-variant11-variant13-variant14-filterInvariant15-variant16-variant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:417,0,3040:6,18,14,0
chr1	201044587	.	T	C	194.3	PASS	AC=1;AF=0.5;AN=2;DP=1602;MQ=60;set=variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-filterInvariant8-variant9-variant11-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-filterInvariant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-filterInvariant34-variant35-filterInvariant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,11:41:99:399,0,3359:10,20,11,0
chr1	201044588	.	A	C	194.3	PASS	AC=1;AF=0.5;AN=2;DP=266;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant11-filterInvariant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,10:43:99:387,0,3463:12,21,10,0
chr1	201047062	.	G	A	833.62	PASS	AC=2;AF=0.568;AN=2;DP=1773;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant21-variant23-variant25-variant26-variant30-variant32-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:3108,211,0:0,0,47,23
chr1	201047075	.	A	G	830.63	PASS	AC=2;AF=0.713;AN=2;DP=3651;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3383,238,0:0,0,49,30
chr1	201052199	.	T	C	826.67	PASS	AC=2;AF=0.568;AN=2;DP=1152;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant21-variant23-variant25-variant26-variant30-variant32-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2228,180,0:0,0,46,14
chr1	201054197	.	G	T	603.4	PASS	AC=1;AF=0.571;AN=2;DP=524;MQ=60;set=variant-variant3-variant8-variant10-variant11-variant12-variant16-variant21-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:384,0,207:5,5,8,11
chr1	201079458	.	T	A	347.27	PASS	AC=1;AF=0.606;AN=2;DP=2798;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,41:75:99:1127,0,1027:11,23,14,27
chr1	201081283	.	AC	A,ACC	525.29	PASS	AC=1,0;AF=0.5,0.063;AN=2;DP=817;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant30-variant33-variant39-variant41	GT:DP:GQ:SB	0/1:41:99:16,7,12,6
chr1	201083343	.	A	G	754.73	PASS	AC=1;AF=0.6;AN=2;DP=2066;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,23:68:99:571,0,1387:25,20,13,10
chr1	201083506	.	A	G	1267.92	PASS	AC=1;AF=0.6;AN=2;DP=4021;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,64:131:99:1517,0,1776:30,37,33,31
chr1	201083886	.	C	G	1564.03	PASS	AC=1;AF=0.533;AN=2;DP=2636;MQ=60;set=variant-variant4-variant6-variant7-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:87,73:160:99:1627,0,2071:35,52,34,39
chr1	201096383	.	A	G	565.45	PASS	AC=1;AF=0.6;AN=2;DP=983;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:409,0,574:6,13,5,8
chr1	201104316	.	G	A	926.42	PASS	AC=1;AF=0.5;AN=2;DP=175;FractionInformativeReads=1;set=variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,49:92:99:1280,0,1075:23,20,22,27
chr1	201104341	.	T	TA	1181.31	PASS	AC=1;AF=0.603;AN=2;DP=2843;set=variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,48:96:99:1405,0,1421:27,21,21,27
chr1	201104589	.	A	G	508.47	PASS	AC=1;AF=0.603;AN=2;DP=1192;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:409,0,512:9,11,10,8
chr1	201112981	.	A	G	2086.61	PASS	AC=1;AF=0.714;AN=2;DP=5063;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,66:128:99:1641,0,1518:36,26,37,29
chr1	201113118	.	A	G	1724.33	PASS	AC=1;AF=0.932;AN=2;DP=4962;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:52,59:111:99:1489,0,1235:18,34,25,34
chr1	201115582	.	C	T	390.99	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=1.475;FractionInformativeReads=1;MQ=60;MQRankSum=-0.264;QD=12.22;ReadPosRankSum=1.02;SOR=0.412;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:419,0,434:11,4,11,6
chr1	201115822	.	A	G	1175.3	PASS	AC=1;AF=0.543;AN=2;DP=3714;MQ=60;set=variant-variant3-variant6-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant31-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:83,54:137:99:1167,0,2043:42,41,27,27
chr1	201116018	.	C	G	1234.79	PASS	AC=1;AF=0.932;AN=2;DP=2556;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:596,0,678:7,17,5,13
chr1	201122784	.	C	T	441.42	PASS	AC=1;AF=0.714;AN=2;DP=1831;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:675,0,419:10,7,18,4
chr1	201122947	.	T	G	1564.58	PASS	AC=1;AF=0.932;AN=2;DP=4504;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1215,0,1104:23,21,24,25
chr1	201140516	.	G	A	186.65	PASS	AC=1;AF=0.536;AN=2;DP=351;MQ=60;set=variant-variant6-variant7-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant30-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:310,0,501:12,4,9,6
chr1	201140614	.	G	T	272.17	PASS	AC=1;AF=0.536;AN=2;DP=792;MQ=60;set=variant-variant6-variant7-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant30-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,26:60:99:571,0,760:19,15,14,12
chr1	201162411	.	G	A	1636.75	PASS	AC=1;AF=0.596;AN=2;DP=1385;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,25:44:99:621,0,504:11,8,13,12
chr1	201163191	.	G	T	1454.03	PASS	AC=1;AF=0.681;AN=2;DP=2349;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,35:63:99:899,0,692:16,12,23,12
chr1	201166124	.	T	C	1026.93	PASS	AC=1;AF=0.614;AN=2;DP=1309;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant8-variant14-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:814,0,817:21,7,22,5
chr1	201166281	.	C	T	2119.6	PASS	AC=1;AF=0.615;AN=2;DP=5459;MQ=60;set=variant4-variant5-variant6-variant8-variant11-variant14-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,103:213:99:2531,0,2652:53,57,55,48
chr1	201166383	.	G	A	3568.04	PASS	AC=1;AF=0.681;AN=2;DP=5646;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,100:177:99:2684,0,1787:29,48,42,58
chr1	201166435	.	T	C	1630.72	PASS	AC=2;AF=0.93;AN=2;DP=4439;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3581,320,0:0,0,37,70
chr1	201166598	.	C	T	539.79	PASS	AC=1;AF=0.596;AN=2;DP=500;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:242,0,412:5,10,2,8
chr1	201168480	.	G	A	2331.27	PASS	AC=1;AF=0.5;AN=2;DP=167;FS=1.237;FractionInformativeReads=1;MQ=60;MQRankSum=-0.641;QD=13.96;ReadPosRankSum=1.501;SOR=0.84;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,95:167:99:2360,0,1661:32,40,39,56
chr1	201169601	.	C	T	2819.12	PASS	AC=1;AF=0.609;AN=2;DP=1111;MQ=60;set=variant3-variant6-variant7-variant8-variant9-variant10-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:756,0,1017:4,27,0,22
chr1	201170772	.	A	G	2088.19	PASS	AC=2;AF=0.943;AN=2;DP=2168;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1264,105,0:0,0,28,7
chr1	201170824	.	C	G	3259.2	PASS	AC=2;AF=0.943;AN=2;DP=4657;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2689,275,0:0,0,55,37
chr1	201170975	.	G	C	877.64	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=1.21;FractionInformativeReads=1;MQ=60;MQRankSum=-0.468;QD=17.55;ReadPosRankSum=2.61;SOR=0.481;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,34:50:99:906,0,384:5,11,13,21
chr1	201171007	.	T	G	503.79	PASS	AC=2;AF=0.788;AN=2;DP=1671;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1071,93,0:0,0,10,21
chr1	201172858	.	G	A	646.52	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0.856;FractionInformativeReads=1;MQ=60;MQRankSum=0.668;QD=7.61;ReadPosRankSum=-1.646;SOR=0.542;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,34:85:99:675,0,1430:32,19,20,14
chr1	201173104	.	C	T	321.22	PASS	AC=1;AF=0.726;AN=2;DP=2318;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:883,0,676:12,17,7,21
chr1	201173180	.	C	A	330.01	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.22;QD=14.35;ReadPosRankSum=0.346;SOR=0.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:358,0,248:3,6,5,9
chr1	201175227	.	C	A	3948.19	PASS	AC=1;AF=0.744;AN=2;DP=7586;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,73:144:99:1755,0,1830:38,33,39,34
chr1	201175274	.	A	G	2284.46	PASS	AC=1;AF=0.621;AN=2;DP=6023;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,75:142:99:1991,0,1700:36,31,39,36
chr1	201175715	.	G	T	2284.79	PASS	AC=1;AF=0.744;AN=2;DP=3975;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,41:95:99:1071,0,1517:23,31,19,22
chr1	201176018	.	A	G	947.96	PASS	AC=1;AF=0.756;AN=2;DP=2465;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:822,0,1010:17,20,15,15
chr1	201176651	.	C	T	800.12	PASS	AC=1;AF=0.5;AN=2;DP=378;MQ=60;set=variant-variant11-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,52:76:99:1486,0,608:6,18,27,25
chr1	201179050	.	A	G	2418.73	PASS	AC=1;AF=0.5;AN=2;DP=22480;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,88:240:99:2822,0,3914:78,74,26,62
chr1	201179068	.	G	A	1628.99	PASS	AC=1;AF=0.5;AN=2;DP=21916;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:159,68:227:99:2110,0,6592:79,80,20,48
chr1	201179082	.	G	A	1349.97	PASS	AC=1;AF=0.5;AN=2;DP=20395;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:151,54:205:99:1855,0,6160:70,81,15,39
chr1	201179599	.	G	C	882.38	PASS	AC=1;AF=0.543;AN=2;DP=594;FractionInformativeReads=1;set=variant5-variant8-variant10-variant11-variant12-variant14-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:554,0,479:4,10,2,14
chr1	201180145	.	G	A	3658.49	PASS	AC=1;AF=0.5;AN=2;DP=10897;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:186,142:328:99:5099,0,4704:122,64,49,93
chr1	201180148	.	A	G	3645.8	PASS	AC=1;AF=0.5;AN=2;DP=10844;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-filterInvariant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:198,125:323:99:4393,0,11258:128,70,37,88
chr1	201180153	.	A	G	3351.98	PASS	AC=1;AF=0.5;AN=2;DP=11055;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:206,111:317:99:4102,0,11983:132,74,32,79
chr1	201180162	.	A	C	3126.83	PASS	AC=1;AF=0.5;AN=2;DP=10482;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant17-variant18-variant19-variant20-variant22-variant23-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-filterInvariant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:235,94:329:99:3279,0,12958:144,91,28,66
chr1	201180172	.	G	A	2232.85	PASS	AC=1;AF=0.5;AN=2;DP=10477;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant17-variant18-variant19-variant20-variant22-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:267,81:348:99:2754,0,14326:163,104,22,59
chr1	201180193	.	A	G	642.65	PASS	AC=1;AF=0.5;AN=2;DP=10514;set=variant-variant2-filterInvariant3-filterInvariant4-variant8-filterInvariant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant17-variant18-variant19-variant20-variant22-variant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:329,53:382:99:1249,0,16513:189,140,11,42
chr1	201180200	.	T	G	378.54	PASS	AC=1;AF=0.5;AN=2;DP=7241;set=filterInvariant-variant2-filterInvariant4-variant8-variant10-filterInvariant11-filterInvariant12-variant18-variant19-filterInvariant20-filterInvariant22-variant26-filterInvariant28-filterInvariant31-filterInvariant33-variant34-filterInvariant35-variant37-variant38-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:342,48:390:99:899,0,16445:194,148,10,38
chr1	201180485	.	A	G	2598.91	PASS	AC=1;AF=0.5;AN=2;DP=326;FS=10.053;FractionInformativeReads=0.997;MQ=55.1;MQRankSum=-12.482;QD=7.97;ReadPosRankSum=1.057;SOR=1.217;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:241,84:325:99:2627,0,12467:118,123,32,52
chr1	201180501	.	T	C	6641.65	PASS	AC=1;AF=0.548;AN=2;DP=10278;set=variant3-variant4-variant6-variant9-variant13-variant14-variant15-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:242,70:312:99:2255,0,12487:121,121,22,48
chr1	201181223	.	A	G	5963.39	PASS	AC=2;AF=1;AN=2;DP=9965;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,224:224:99:6751,670,0:0,0,112,112
chr1	201181994	.	A	G	1446.01	PASS	AC=1;AF=0.5;AN=2;DP=632;MQ=60;set=variant-variant11-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,55:113:99:1478,0,1526:31,27,35,20
chr1	201183439	.	C	T	2094.58	PASS	AC=1;AF=0.5;AN=2;DP=954;MQ=60;set=variant-variant11-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:113,78:191:99:1670,0,2592:51,62,34,44
chr1	201184097	.	G	A	2642.55	PASS	AC=1;AF=0.523;AN=2;DP=2013;MQ=60;set=variant5-variant8-variant10-variant11-variant12-variant14-variant16-variant17-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,45:101:99:1017,0,1402:31,25,22,23
chr1	201187764	.	T	C	1381.83	PASS	AC=2;AF=0.864;AN=2;DP=6566;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:3940,392,0:0,0,64,67
chr1	201187828	.	T	C	872.32	PASS	AC=2;AF=0.864;AN=2;DP=4629;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2989,276,0:0,0,38,54
chr1	201187890	.	C	T	450.13	PASS	AC=1;AF=0.5;AN=2;DP=146;FractionInformativeReads=1;MQ=60;set=variant-variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,34:57:99:1045,0,604:6,17,11,23
chr1	201187954	.	C	T	207.96	PASS	AC=2;AF=0.864;AN=2;DP=726;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:724,69,0:0,0,7,16
chr1	201193601	.	C	T	427.28	PASS	AC=1;AF=0.5;AN=2;DP=606;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant11-variant12-variant14-variant17-variant24-variant29-variant32-variant33-variant34-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:426,0,650:15,5,11,2
chr1	201193668	.	G	T	1317.73	PASS	AC=2;AF=0.898;AN=2;DP=3935;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2827,261,0:0,0,56,31
chr1	201195296	.	G	A	326.5	PASS	AC=1;AF=0.538;AN=2;DP=573;MQ=60;set=variant-variant10-variant11-variant12-variant14-variant17-variant22-variant24-variant29-variant34-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,21:50:99:582,0,935:7,22,3,18
chr1	201197331	.	G	A	197.88	PASS	AC=1;AF=0.676;AN=2;DP=904;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:349,0,455:12,1,9,4
chr1	201197358	.	G	C	511.19	PASS	AC=1;AF=0.558;AN=2;DP=1029;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:675,0,554:14,6,18,6
chr1	201197471	.	T	C	1562.13	PASS	AC=1;AF=0.558;AN=2;DP=3567;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,83:157:99:1921,0,1769:40,34,45,38
chr1	201197781	.	C	T	628.54	PASS	AC=1;AF=0.558;AN=2;DP=1906;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,22:60:99:555,0,1071:20,18,9,13
chr1	201198183	.	A	G	70.66	PASS	AC=2;AF=0.927;AN=2;DP=250;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:300,21,0:0,0,0,7
chr1	201282573	.	A	G	884.44	PASS	AC=2;AF=0.571;AN=2;DP=771;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant10-variant20-variant22-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2669,258,0:0,0,38,48
chr1	201282754	.	C	G	198.6	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=6.892;FractionInformativeReads=1;MQ=60;MQRankSum=-0.831;QD=16.55;ReadPosRankSum=-0.38;SOR=0.042;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:227,0,180:0,5,3,4
chr1	201285759	.	A	G	1540.25	PASS	AC=2;AF=0.989;AN=2;DP=2887;MQ=60;MQRankSum=-0.525;ReadPosRankSum=0.673;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2465,246,0:0,0,43,39
chr1	201285909	.	A	G	322.85	PASS	AC=2;AF=0.814;AN=2;DP=729;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:942,81,0:0,0,7,20
chr1	201286614	.	GA	G	457.73	PASS	AC=2;AF=0.907;AN=2;DP=1399;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:99:1451,99,0:0,0,21,10
chr1	201286628	.	C	G	553.59	PASS	AC=2;AF=0.907;AN=2;DP=1676;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1567,111,0:0,0,24,13
chr1	201288007	.	G	A	613.12	PASS	AC=2;AF=0.917;AN=2;DP=947;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:801,75,0:0,0,9,16
chr1	201288898	.	A	C	571.36	PASS	AC=2;AF=1;AN=2;DP=3035;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2185,207,0:0,0,44,25
chr1	201290968	.	T	G	752.17	PASS	AC=2;AF=1;AN=2;DP=1632;FS=0;MQ=60;MQRankSum=1.238;ReadPosRankSum=0.413;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1267,102,0:0,0,29,5
chr1	201291066	.	C	T	3618.84	PASS	AC=2;AF=0.756;AN=2;DP=6448;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4678,461,0:0,0,95,59
chr1	201292110	.	T	C	915.68	PASS	AC=2;AF=1;AN=2;DP=2851;FS=0;MQ=60;MQRankSum=1.606;ReadPosRankSum=0.472;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1927,183,0:0,0,39,22
chr1	201293970	.	C	T	366.99	PASS	AC=2;AF=0.989;AN=2;DP=515;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.58;ReadPosRankSum=-0.731;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:213,15,0:0,0,3,2
chr1	201294278	.	G	A	344.57	PASS	AC=2;AF=0.571;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant10-variant20-variant22-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1827,171,0:0,0,19,38
chr1	201299263	.	A	G	511.33	PASS	AC=2;AF=1;AN=2;DP=595;FS=0;MQ=60;MQRankSum=1.542;ReadPosRankSum=-0.964;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:274,21,0:0,0,5,2
chr1	201299391	.	G	C	514.14	PASS	AC=2;AF=0.583;AN=2;DP=205;MQ=60;set=variant2-variant7-variant10-filterInvariant11-variant12-variant20-variant22-variant24-variant28-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:680,48,0:0,0,12,4
chr1	201299393	.	T	G	709.57	PASS	AC=2;AF=0.977;AN=2;DP=777;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:48:680,48,0:0,0,11,4
chr1	201299785	.	A	C	2031.13	PASS	AC=1;AF=0.86;AN=2;DP=2926;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,55:86:99:1531,0,857:12,19,24,31
chr1	201299842	.	G	T	809.11	PASS	AC=1;AF=0.545;AN=2;DP=914;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant19-variant21-variant22-variant27-variant31-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,47:85:99:1239,0,992:17,21,22,25
chr1	201300025	.	C	T	112.14	PASS	AC=1;AF=0.545;AN=2;DP=383;MQ=60;set=variant13-variant18-variant19-variant21-variant22-variant27-variant31-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:564,0,583:5,14,6,14
chr1	201300842	.	T	C	2029.79	PASS	AC=2;AF=0.92;AN=2;DP=3459;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2090,200,0:0,0,30,37
chr1	201300858	.	C	A	2123.53	PASS	AC=2;AF=0.989;AN=2;DP=3319;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2021,186,0:0,0,28,34
chr1	201301696	.	G	A	556.26	PASS	AC=2;AF=0.588;AN=2;DP=811;MQ=60;set=variant2-variant7-variant9-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant31-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,56:58:95:2054,95,0:1,1,28,28
chr1	201301711	.	G	A	470.05	PASS	AC=1;AF=0.5;AN=2;DP=327;MQ=60;set=variant2-variant7-variant20-variant22-variant23-variant25-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,21:46:99:662,0,850:17,8,8,13
chr1	201301737	.	G	GCCCCCACCCTGA	415.45	PASS	AC=1;AF=0.559;AN=2;DP=695;MQ=60;set=variant2-variant7-variant9-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant31-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:738,0,990:15,10,8,11
chr1	201301873	.	A	G	1760.62	PASS	AC=1;AF=0.849;AN=2;DP=4047;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,33:104:99:651,0,1866:35,36,17,16
chr1	201301906	.	C	G	2392.59	PASS	AC=2;AF=0.852;AN=2;DP=4417;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3402,344,0:0,0,58,57
chr1	201301921	.	G	A	1085.04	PASS	AC=1;AF=0.5;AN=2;DP=117;FS=4.574;FractionInformativeReads=1;MQ=60;MQRankSum=0.759;QD=9.27;ReadPosRankSum=-2.527;SOR=0.798;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,47:117:99:1113,0,1799:32,38,26,21
chr1	201328824	.	G	A	2170.42	PASS	AC=1;AF=0.533;AN=2;DP=2943;MQ=60;set=variant9-variant10-variant13-variant14-variant17-variant18-variant21-variant22-variant25-variant27-variant31-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:90,103:193:99:2529,0,2161:41,49,46,57
chr1	201328913	.	G	C	814.43	PASS	AC=1;AF=0.533;AN=2;DP=980;MQ=60;set=variant9-variant10-variant13-variant14-variant17-variant18-variant21-variant22-variant25-variant27-variant31-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,39:69:99:1172,0,809:8,22,9,30
chr1	201330429	.	T	C	1877.15	PASS	AC=1;AF=0.5;AN=2;DP=348;FractionInformativeReads=1;MQ=60;set=variant22-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,60:106:99:1501,0,1142:22,24,33,27
chr1	201331554	.	T	G	2300.46	PASS	AC=2;AF=0.841;AN=2;DP=5684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:3688,391,0:0,0,73,58
chr1	201331664	.	C	A	1793.77	PASS	AC=1;AF=0.736;AN=2;DP=3356;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,53:102:99:1203,0,1190:16,33,23,30
chr1	201332661	.	G	A	761.96	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.455;QD=11.72;ReadPosRankSum=0.468;SOR=0.821;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:790,0,930:11,25,8,21
chr1	201334382	.	G	A	5598.03	PASS	AC=2;AF=0.841;AN=2;DP=7627;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:5701,563,0:0,0,83,105
chr1	201334795	.	C	T	1618.55	PASS	AC=1;AF=0.5;AN=2;DP=982;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant20-variant22-variant30-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,64:134:99:1606,0,1664:35,35,26,38
chr1	201335899	.	C	T	747.99	PASS	AC=2;AF=0.989;AN=2;DP=1572;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:788,77,0:0,0,16,10
chr1	201337170	.	A	G	546.6	PASS	AC=2;AF=0.852;AN=2;DP=1449;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1924,168,0:0,0,33,23
chr1	201338553	.	T	C	1068.41	PASS	AC=2;AF=0.841;AN=2;DP=1878;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1551,117,0:0,0,4,35
chr1	201338586	.	A	G	609.24	PASS	AC=1;AF=0.736;AN=2;DP=983;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:421,0,463:1,12,1,11
chr1	201338896	.	T	C	1425.84	PASS	AC=1;AF=0.73;AN=2;DP=3281;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,45:89:99:999,0,1096:24,20,22,23
chr1	201339043	.	C	T	953.7	PASS	AC=1;AF=0.737;AN=2;DP=1800;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,12:45:99:235,0,878:12,21,4,8
chr1	201341175	.	CAGAAG	C	3385.05	PASS	AC=1;AF=0.736;AN=2;DP=4000;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,36:100:99:1314,0,4204:43,21,23,13
chr1	201341341	.	C	T	2441.19	PASS	AC=2;AF=0.841;AN=2;DP=3769;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3154,292,0:0,0,31,67
chr1	201342560	.	T	C	960.6	PASS	AC=1;AF=0.5;AN=2;DP=183;FractionInformativeReads=1;MQ=60;set=variant22-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:389,0,736:10,17,8,10
chr1	201342656	.	A	G	190.24	PASS	AC=1;AF=0.5;AN=2;DP=44;FractionInformativeReads=1;MQ=60;set=variant22-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,4:18:99:113,0,456:3,11,1,3
chr1	201350520	.	C	A	837.46	PASS	AC=1;AF=0.5;AN=2;DP=150;MQ=60;set=variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,34:76:99:810,0,1101:21,21,15,19
chr1	201350983	.	C	T	1373.47	PASS	AC=1;AF=0.5;AN=2;DP=272;FractionInformativeReads=1;MQ=60;set=variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,53:141:99:1286,0,2068:42,46,27,26
chr1	201351558	.	C	T	590.24	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=1.708;FractionInformativeReads=1;MQ=60;MQRankSum=0.803;QD=20.35;ReadPosRankSum=-0.757;SOR=1.432;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:618,0,223:4,6,5,14
chr1	201354027	.	T	C	567.14	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0.97;FractionInformativeReads=1;MQ=60;MQRankSum=-0.944;QD=8.73;ReadPosRankSum=0.556;SOR=0.96;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,26:65:99:595,0,1006:20,19,15,11
chr1	201355522	.	T	C	1277.44	PASS	AC=2;AF=0.688;AN=2;DP=3282;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3454,330,0:0,0,66,44
chr1	201355761	.	A	G	1240.15	PASS	AC=1;AF=0.5;AN=2;DP=650;MQ=60;set=variant9-variant17-variant18-variant19-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,65:125:99:1671,0,1381:29,31,27,38
chr1	201355898	.	G	A	1385.48	PASS	AC=1;AF=0.5;AN=2;DP=119;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.591;QD=11.64;ReadPosRankSum=0.787;SOR=0.675;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,54:119:99:1414,0,1681:34,31,28,26
chr1	201355943	.	C	T	1858.57	PASS	AC=1;AF=0.672;AN=2;DP=4959;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,61:120:99:1422,0,1418:28,31,30,31
chr1	201356001	.	CCCA	C	2562.57	PASS	AC=1;AF=0.5;AN=2;DP=1065;MQ=60;set=variant10-variant11-variant12-variant14-variant24-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,70:129:99:2721,0,2267:34,25,35,35
chr1	201358304	.	C	A	1805.18	PASS	AC=2;AF=0.556;AN=2;DP=1490;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant12-variant14-variant21-variant22-variant24-variant28-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:5621,563,0:0,0,87,101
chr1	201360379	.	T	C	166.07	PASS	AC=2;AF=0.536;AN=2;DP=226;FractionInformativeReads=1;MQ=60;set=variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant21-variant22-variant24-variant28-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:764,60,0:0,0,2,18
chr1	201374653	.	C	T	424.04	PASS	AC=2;AF=0.661;AN=2;DP=1754;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2223,226,0:0,0,31,45
chr1	201374677	.	A	C	506.11	PASS	AC=2;AF=0.672;AN=2;DP=1840;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1856,182,0:0,0,23,38
chr1	201375370	.	TCCTCATCTGTAAATTTG	T	422.19	PASS	AC=2;AF=0.656;AN=2;DP=2190;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2746,190,0:0,0,28,35
chr1	201375658	.	A	G	745.27	PASS	AC=2;AF=0.672;AN=2;DP=1479;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1320,114,0:0,0,13,25
chr1	201375751	.	T	C	650.45	PASS	AC=2;AF=0.672;AN=2;DP=1233;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1271,108,0:0,0,19,17
chr1	201375813	.	A	G	965.67	PASS	AC=2;AF=0.672;AN=2;DP=1968;MQ=60;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1867,185,0:0,0,36,26
chr1	201376261	.	A	G	492.97	PASS	AC=2;AF=0.672;AN=2;DP=1874;set=variant-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1495,138,0:0,0,27,19
chr1	201377438	.	A	G	588.95	PASS	AC=2;AF=0.898;AN=2;DP=2535;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1806,177,0:0,0,35,24
chr1	201377885	.	G	A	1490.81	PASS	AC=2;AF=0.716;AN=2;DP=1878;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:2101,153,0:0,0,22,26
chr1	201377894	.	A	T	1524.62	PASS	AC=2;AF=0.716;AN=2;DP=1766;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:2089,150,0:0,0,24,23
chr1	201378488	.	G	A	49.73	PASS	AC=2;AF=0.6;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant12-variant15-variant18-variant19-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:259,18,0:0,0,0,6
chr1	201383616	.	A	G	255.29	PASS	AC=2;AF=0.898;AN=2;DP=1987;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1303,105,0:0,0,25,10
chr1	201383643	.	A	C	586.49	PASS	AC=2;AF=0.898;AN=2;DP=3015;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1830,159,0:0,0,39,14
chr1	201387172	.	CTT	CT,CTTT,C	56.1	PASS	AC=1,0,0;AF=0.4,0.033,0.067;AN=2;DP=355;MQ=60;set=filterInvariant3-filterInvariant4-filterInvariant7-variant8-filterInvariant9-filterInvariant11-variant19-variant24-variant27-filterInvariant29-variant34-variant37-variant38-filterInvariant41-variant42	GT:DP:GQ:SB	0/1:7:17:1,1,1,4
chr1	201398228	.	C	T	406.01	PASS	AC=1;AF=0.718;AN=2;DP=2135;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:730,0,790:15,13,14,16
chr1	201398255	.	C	T	769.36	PASS	AC=1;AF=0.5;AN=2;DP=167;FractionInformativeReads=1;MQ=60;set=variant10-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,32:54:99:863,0,541:11,11,16,16
chr1	201398507	.	GA	G	44.34	PASS	AC=1;AF=0.559;AN=2;DP=259;MQ=60;set=variant2-variant3-variant5-variant10-variant11-variant19-variant20-filterInvariant21-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:87:116,0,87:1,3,0,5
chr1	201434740	.	G	A	1412.29	PASS	AC=1;AF=0.771;AN=2;DP=2415;MQ=60;set=variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:858,0,978:23,10,20,13
chr1	201435069	.	C	A	2845.72	PASS	AC=2;AF=0.556;AN=2;DP=1443;MQ=60;set=variant4-variant10-variant13-variant16-variant28-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5101,506,0:0,0,81,89
chr1	201438087	.	G	GGA	1081.53	PASS	AC=1;AF=0.718;AN=2;DP=1848;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,34:54:99:1307,0,709:9,11,21,13
chr1	201438449	.	G	A	393.76	PASS	AC=1;AF=0.718;AN=2;DP=1000;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:297,0,187:2,5,2,6
chr1	201453289	.	T	C	1131.55	PASS	AC=1;AF=0.898;AN=2;DP=1702;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:751,0,776:15,18,13,15
chr1	201457639	.	GA	G	137.95	PASS	AC=1;AF=0.703;AN=2;DP=530;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:249,0,107:4,0,7,1
chr1	201457680	.	C	T	257.35	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.969;QD=10.29;ReadPosRankSum=-1.193;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:286,0,408:11,4,8,2
chr1	201458143	.	C	T	420.53	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=3.696;FractionInformativeReads=1;MQ=60;MQRankSum=1.375;QD=14.5;ReadPosRankSum=-0.24;SOR=1.569;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:449,0,382:5,9,3,12
chr1	201459079	.	T	G	199.43	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:535,0,196:6,1,14,2
chr1	201465839	.	T	C	103.54	PASS	AC=2;AF=0.967;AN=2;DP=151;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:208,15,0:0,0,2,3
chr1	201475727	.	A	C	2884.05	PASS	AC=2;AF=0.86;AN=2;DP=4842;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3342,318,0:0,0,62,44
chr1	201489286	.	C	G	443.83	PASS	AC=1;AF=0.611;AN=2;DP=1335;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant14-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:499,0,608:12,12,14,9
chr1	201617572	.	CT	C	42.72	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:80:80,0,80:1,2,0,3
chr1	201754410	.	CTT	CT,C	66.77	PASS	AC=1,0;AF=0.5,0.237;AN=2;DP=1700;set=variant-variant2-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-filterInvariant40-variant41-variant43	GT:DP:GQ:SB	0/1:43:99:13,12,10,8
chr1	201754411	.	T	TC	136.96	PASS	AC=1;AF=0.5;AN=2;DP=606;set=variant4-variant5-variant13-filterInvariant16-filterInvariant21-filterInvariant24-filterInvariant25-variant35-filterInvariant36-variant39-filterInvariant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,11:41:99:145,0,877:17,13,4,7
chr1	201754720	.	G	A	197.89	PASS	AC=1;AF=0.55;AN=2;DP=505;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant12-variant13-variant16-variant17-variant21-variant23-variant24-variant25-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,19:30:99:668,0,283:3,8,3,16
chr1	201762777	.	A	G	203.55	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=1.885;FractionInformativeReads=1;MQ=60;MQRankSum=0.623;QD=5.82;ReadPosRankSum=0.585;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,9:35:99:232,0,807:20,6,8,1
chr1	201763184	.	T	C	1627.21	PASS	AC=1;AF=0.743;AN=2;DP=6703;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,83:180:99:1978,0,2288:55,42,49,34
chr1	201763499	.	C	T	211.59	PASS	AC=1;AF=0.721;AN=2;DP=687;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:280,0,147:2,2,5,3
chr1	201763912	.	T	C	248.86	PASS	AC=1;AF=0.757;AN=2;DP=539;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:108,0,163:1,4,0,3
chr1	201772863	.	T	TG	1655.53	PASS	AC=2;AF=1;AN=2;DP=2972;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1611,144,0:0,0,13,35
chr1	201773707	.	TAA	TA,T	376.62	PASS	AC=1,0;AF=0.435,0.087;AN=2;DP=1641;set=variant2-variant4-filterInvariant6-variant7-variant8-variant10-variant11-filterInvariant12-variant15-variant18-variant19-variant20-variant22-filterInvariant23-variant26-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant41	GT:DP:GQ:SB	0/1:52:99:12,9,15,16
chr1	201780786	.	T	C	2141.15	PASS	AC=1;AF=0.5;AN=2;DP=265;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:71,89:160:99:2169,0,1695:35,36,47,42
chr1	201790270	.	A	G	556.77	PASS	AC=1;AF=0.518;AN=2;DP=1596;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,34:64:99:793,0,782:15,15,14,20
chr1	201790633	.	GACACACACACACACACACAC	GAC,GACACACACACACACACACACAC,GACACACACACACACACAC,GACACACACACACACAC,G,GACACACACACACACACACACACAC,GACACAC	241.33	PASS	AC=0,0,0,0,1,0,0;AF=0.274,0.095,0.214,0.048,0.202,0.012,0.024;AN=2;DP=821;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/5:16:99:4,1,5,6
chr1	201790826	.	T	C	233.89	PASS	AC=1;AF=0.652;AN=2;DP=944;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:223,0,552:8,10,6,3
chr1	201791400	.	G	A	591.11	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:619,0,398:7,11,8,15
chr1	201792498	.	G	GTA	379.7	PASS	AC=1;AF=0.618;AN=2;DP=789;set=variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:255,0,514:8,5,5,2
chr1	201793440	.	C	G	438.36	PASS	AC=1;AF=0.636;AN=2;DP=965;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,13:39:99:343,0,690:13,13,6,7
chr1	201793764	.	G	A	431.36	PASS	AC=2;AF=1;AN=2;DP=1284;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1262,123,0:0,0,22,19
chr1	201794455	.	TAA	TA,T,TAAA	80.79	PASS	AC=0,0,1;AF=0.321,0.013,0.167;AN=2;DP=2502;set=filterInvariant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant19-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:43:99:9,18,7,9
chr1	201816300	.	A	G	443.26	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=1.752;FractionInformativeReads=1;MQ=60;MQRankSum=0.553;QD=17.05;ReadPosRankSum=-1.66;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:471,0,291:8,2,11,5
chr1	201816639	.	ATCTTTT	A	3698.08	PASS	AC=1;AF=0.559;AN=2;DP=1348;MQ=60;set=variant8-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:1290,0,2403:21,11,19,14
chr1	201821443	.	T	C	1019.35	PASS	AC=1;AF=0.556;AN=2;DP=675;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,12:38:99:286,0,796:7,19,5,7
chr1	201826340	.	C	T	2978.07	PASS	AC=1;AF=0.556;AN=2;DP=2134;set=variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,51:119:99:1387,0,1782:33,35,24,27
chr1	201826482	.	C	T	1310.53	PASS	AC=1;AF=0.556;AN=2;DP=614;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:563,0,490:3,12,5,13
chr1	201832451	.	T	G	914.82	PASS	AC=2;AF=1;AN=2;DP=1298;FS=0;FractionInformativeReads=1;MQRankSum=1.639;ReadPosRankSum=1.264;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:856,72,0:0,0,18,6
chr1	201832864	.	G	C	2524.91	PASS	AC=1;AF=0.556;AN=2;DP=1212;MQ=60;set=variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:762,0,922:11,20,5,21
chr1	201837934	.	CGT	C	1370.41	PASS	AC=2;AF=0.942;AN=2;DP=5570;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,90:91:99:3085,238,0:1,0,50,40
chr1	201838050	.	T	G	1039.64	PASS	AC=1;AF=0.5;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,47:72:99:1354,0,621:9,16,14,33
chr1	201838107	.	G	A	1828.1	PASS	AC=1;AF=0.559;AN=2;DP=767;MQ=60;set=variant8-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:281,0,487:2,13,5,6
chr1	201840059	.	GTTATT	G	1518.88	PASS	AC=2;AF=0.989;AN=2;DP=2377;FS=0;MQ=60;MQRankSum=1.89;ReadPosRankSum=-0.095;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2271,154,0:0,0,17,34
chr1	201840464	.	T	C	2592.57	PASS	AC=2;AF=1;AN=2;DP=3209;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2259,204,0:0,0,26,42
chr1	201841734	.	AAACAACAAC	AAACAACAACAAC,A	315.22	PASS	AC=0,1;AF=0.55,0.025;AN=2;DP=371;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant16-variant19-variant22-variant26-variant27-variant28-variant32-variant34-variant35-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:25:99:11,2,10,2
chr1	201844128	.	G	A	1707.15	PASS	AC=2;AF=1;AN=2;DP=2606;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2080,186,0:0,0,29,33
chr1	201845575	.	C	A	1635.6	PASS	AC=1;AF=0.559;AN=2;DP=966;MQ=60;set=variant8-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:710,0,705:14,13,10,15
chr1	201845882	.	GA	GAA,GAAA,G	1242.12	PASS	AC=1,0,0;AF=0.535,0.035,0.012;AN=2;DP=3072;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:69:99:15,18,20,16
chr1	201846580	.	G	A	305.58	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=1.77;FractionInformativeReads=1;MQ=60;MQRankSum=-0.386;QD=11.75;ReadPosRankSum=0.283;SOR=0.307;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:334,0,430:11,3,8,4
chr1	201846615	.	TCACACACACACA	T,TCACACACACACACA,TCACACACACACACACA,TCACACACACA	2734.61	PASS	AC=1,1,0,0;AF=0.622,0.024,0.122,0.024;AN=2;DP=1838;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:37:99:0,0,22,15
chr1	201847055	.	C	CA,CAA	54.15	PASS	AC=1,0;AF=0.333,0.167;AN=2;DP=18;FS=0;MQ=60;set=variant9-variant39-variant41	GT:DP:GQ:SB	0/1:6:33:1,1,3,1
chr1	201850057	.	T	C	3412.35	PASS	AC=1;AF=0.556;AN=2;DP=1813;MQ=60;set=variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,51:93:99:1265,0,1060:26,16,30,21
chr1	201850391	.	C	CACTT	2265.52	PASS	AC=1;AF=0.81;AN=2;DP=1944;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:816,0,1346:11,11,14,7
chr1	201851558	.	TCAAAAAAAAAAAAAAA	T	482.19	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=2.788;FractionInformativeReads=0.983;MQ=60;MQRankSum=-0.406;QD=8.04;ReadPosRankSum=3.091;SOR=1.352;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:519,0,1454:25,9,21,4
chr1	201851697	.	G	T	1946.9	PASS	AC=1;AF=0.5;AN=2;DP=184;FS=1.135;FractionInformativeReads=1;MQ=60;MQRankSum=1.785;QD=10.58;ReadPosRankSum=1.383;SOR=0.786;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:94,90:184:99:1975,0,2517:48,46,48,42
chr1	201852299	.	TC	TCCC,TCC,T	1327.23	PASS	AC=0,0,1;AF=0.238,0.536,0.012;AN=2;DP=3542;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:80:99:10,14,31,25
chr1	201852308	.	C	G	1368.34	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=3.031;FractionInformativeReads=1;MQ=60;MQRankSum=-1.608;QD=16.1;ReadPosRankSum=0.672;SOR=0.691;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,56:85:99:1397,0,1274:13,16,30,26
chr1	201860626	.	A	G	1008.71	PASS	AC=1;AF=0.821;AN=2;DP=3138;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,40:80:99:1031,0,954:19,21,17,23
chr1	201865763	.	A	G	3384.55	PASS	AC=1;AF=0.821;AN=2;DP=5323;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,62:118:99:1491,0,1350:27,29,28,34
chr1	201869257	.	G	A	6035.66	PASS	AC=1;AF=0.559;AN=2;DP=3065;MQ=60;set=variant8-variant9-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant30-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,115:205:99:2907,0,2329:37,53,50,65
chr1	201915658	.	A	C	1525.98	PASS	AC=2;AF=1;AN=2;DP=2089;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.073;ReadPosRankSum=1.098;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1560,141,0:0,0,17,30
chr1	201915718	.	C	G	998.97	PASS	AC=2;AF=1;AN=2;DP=1429;FS=0;MQ=60;MQRankSum=-0.788;ReadPosRankSum=-0.788;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1154,102,0:0,0,11,23
chr1	201938482	.	C	T	79.91	PASS	AC=2;AF=0.717;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant15-variant17-variant18-variant21-variant23-variant24-variant26-variant27-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,3,0
chr1	201938995	.	C	T	6504.36	PASS	AC=2;AF=0.621;AN=2;DP=12348;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,351:352:99:10809,1045,0:1,0,180,171
chr1	201939752	.	C	T	2573.25	PASS	AC=2;AF=0.586;AN=2;DP=5054;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:4103,380,0:0,0,46,81
chr1	201939785	.	A	T	1910.31	PASS	AC=2;AF=0.586;AN=2;DP=3209;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,74:75:99:2554,219,0:1,0,22,52
chr1	201952294	.	C	G	679.27	PASS	AC=2;AF=0.6;AN=2;DP=1240;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1214,93,0:0,0,15,16
chr1	201952310	.	T	G	559.49	PASS	AC=2;AF=0.6;AN=2;DP=1080;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:81:1130,81,0:0,0,9,14
chr1	201952440	.	C	CCTT	727.34	PASS	AC=2;AF=0.6;AN=2;DP=1928;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2295,153,0:0,0,31,19
chr1	201952574	.	T	C	1917.18	PASS	AC=2;AF=0.629;AN=2;DP=5050;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3401,320,0:0,0,55,52
chr1	201952598	.	G	A	1450.81	PASS	AC=1;AF=0.531;AN=2;DP=2335;MQ=60;set=variant5-variant7-variant9-variant10-variant11-variant20-variant21-variant26-variant27-variant31-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,65:128:99:1581,0,1647:35,28,31,34
chr1	201952755	.	T	A	697.79	PASS	AC=2;AF=0.6;AN=2;DP=2524;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1608,149,0:0,0,15,35
chr1	201966541	.	C	T	1884.46	PASS	AC=1;AF=0.5;AN=2;DP=179;FS=6.418;FractionInformativeReads=1;MQ=60;MQRankSum=1.04;QD=10.53;ReadPosRankSum=-0.033;SOR=0.568;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,80:179:99:1913,0,2598:57,42,38,42
chr1	201966894	.	G	GTTT,GTTTT,GTT,GT,GTTTTT	48.39	PASS	AC=0,0,2,0,0;AF=0.258,0.403,0.177,0.032,0.032;AN=2;DP=424;set=variant3-variant4-variant6-variant7-variant8-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	3/3:9:24:0,0,1,8
chr1	201969082	.	G	A	659.53	PASS	AC=1;AF=0.7;AN=2;DP=2275;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:875,0,1027:21,18,20,12
chr1	201970562	.	T	C	8545.54	PASS	AC=2;AF=1;AN=2;DP=12138;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,270:270:99:8197,808,0:0,0,116,154
chr1	201970748	.	G	A	848.72	PASS	AC=1;AF=0.717;AN=2;DP=2520;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,35:69:99:966,0,940:19,15,19,16
chr1	201970986	.	C	CA	419.89	PASS	AC=1;AF=0.5;AN=2;DP=391;MQ=60;set=variant6-variant7-variant8-variant9-variant11-variant16-variant20-variant21-variant22-variant26-variant27-variant31-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:436,0,369:2,10,4,11
chr1	201973565	.	G	A	1071.39	PASS	AC=1;AF=0.5;AN=2;DP=1395;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant9-variant11-variant16-variant20-variant21-variant22-variant26-variant27-variant31-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:967,0,1024:18,23,19,22
chr1	201975143	.	AG	A	585.67	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=4.716;FractionInformativeReads=0.977;MQ=60;MQRankSum=0.239;QD=13.62;ReadPosRankSum=-0.416;SOR=1.532;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:623,0,690:9,13,5,15
chr1	201975169	.	TTCTG	T	613.46	PASS	AC=1;AF=0.5;AN=2;DP=487;MQ=60;set=variant6-variant7-variant8-variant9-variant11-variant16-variant20-variant21-variant22-variant26-variant27-variant31-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:913,0,561:4,11,9,14
chr1	201977254	.	T	C	1016.87	PASS	AC=1;AF=0.717;AN=2;DP=2687;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,45:90:99:1243,0,1232:27,18,23,22
chr1	201977600	.	C	A	110.05	PASS	AC=1;AF=0.609;AN=2;DP=556;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:88:88,0,422:8,3,3,2
chr1	201977827	.	G	T	810.37	PASS	AC=1;AF=0.714;AN=2;DP=561;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,14:16:43:420,0,43:1,1,5,9
chr1	201978323	.	T	C	1074.83	PASS	AC=1;AF=0.594;AN=2;DP=1344;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:529,0,750:18,12,13,9
chr1	201980119	.	C	G	1571.12	PASS	AC=1;AF=0.7;AN=2;DP=4140;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,55:114:99:1328,0,1711:35,24,33,22
chr1	201981005	.	CAA	CA,CAAA,C	89.72	PASS	AC=0,1,0;AF=0.346,0.135,0.019;AN=2;DP=452;set=variant2-filterInvariant4-variant5-variant8-filterInvariant10-variant12-variant13-filterInvariant15-variant16-filterInvariant17-variant18-variant19-variant20-variant22-variant23-variant24-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:DP:GQ:SB	0/2:15:78:9,0,6,0
chr1	201981862	.	T	C	567.15	PASS	AC=1;AF=0.632;AN=2;DP=2270;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,35:70:99:1002,0,798:17,18,15,20
chr1	201983242	.	C	T	61.77	PASS	AC=1;AF=0.596;AN=2;DP=639;MQ=60;set=variant-variant3-variant4-variant8-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:225,0,226:3,6,2,6
chr1	201985648	.	GAA	GA,G,GAAA	3965.58	PASS	AC=2,0,0;AF=0.841,0.091,0.011;AN=2;DP=12542;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:262:99:11,13,126,112
chr1	201985731	.	G	A	2872.3	PASS	AC=1;AF=0.786;AN=2;DP=12185;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:141,120:261:99:2989,0,3550:59,82,53,67
chr1	202091898	.	CAA	C	256.57	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=0.957;MQ=60;MQRankSum=-0.853;QD=11.16;ReadPosRankSum=1.126;SOR=0.382;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:294,0,523:10,4,5,3
chr1	202092046	.	C	T	2472.31	PASS	AC=1;AF=0.833;AN=2;DP=3176;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,23:70:99:569,0,1326:30,17,13,10
chr1	202092332	.	C	G	921.28	PASS	AC=1;AF=0.5;AN=2;DP=672;MQ=60;set=variant12-variant14-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,50:99:99:1420,0,1370:32,17,32,18
chr1	202092360	.	G	A	3144.42	PASS	AC=2;AF=0.866;AN=2;DP=5532;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,116:118:99:3400,330,0:0,2,71,45
chr1	202092415	.	A	G	3381.3	PASS	AC=2;AF=0.866;AN=2;DP=6672;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,140:141:99:4449,411,0:0,1,65,75
chr1	202092580	.	T	C	4095.49	PASS	AC=2;AF=0.866;AN=2;DP=7361;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5315,505,0:0,0,89,80
chr1	202096815	.	G	A	2209.63	PASS	AC=1;AF=0.808;AN=2;DP=4240;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,51:104:99:1215,0,1285:33,20,30,21
chr1	202098078	.	C	T	867.38	PASS	AC=1;AF=0.614;AN=2;DP=1203;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant15-variant16-variant18-variant22-variant23-variant24-variant27-variant30-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:454,0,628:9,14,10,12
chr1	202098133	.	CTT	CT,C,CTTT,CTTTT	130.19	PASS	AC=1,0,0,0;AF=0.4,0.08,0.04,0.02;AN=2;DP=678;set=variant2-variant3-filterInvariant9-variant10-variant11-variant12-variant13-variant17-variant19-filterInvariant20-filterInvariant21-variant22-filterInvariant24-variant26-variant27-variant28-variant29-variant31-filterInvariant32-filterInvariant36-variant38-variant39-filterInvariant40-filterInvariant41-variant44	GT:DP:GQ:SB	0/1:6:4:0,1,2,3
chr1	202103802	.	G	A	1544.95	PASS	AC=2;AF=0.646;AN=2;DP=581;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:642,51,0:0,0,3,14
chr1	202107422	.	AACACACAC	AAC,AACAC,AACACACACAC,AACACAC,A,AACACACACACACAC	961.24	PASS	AC=2,0,0,0,0,0;AF=0.59,0.077,0.013,0.064,0.051,0.013;AN=2;DP=1135;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:36:99:0,0,26,10
chr1	202113835	.	T	G	2382.38	PASS	AC=2;AF=0.792;AN=2;DP=2476;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2568,207,0:0,0,13,56
chr1	202116238	.	G	A	2088.91	PASS	AC=1;AF=0.643;AN=2;DP=1696;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant30-variant31-variant32-variant34-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,39:76:99:927,0,977:21,16,18,21
chr1	202116957	.	T	A	1515.98	PASS	AC=1;AF=0.636;AN=2;DP=1797;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant30-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,34:85:99:895,0,1258:22,29,13,21
chr1	202117002	.	G	A	580.84	PASS	AC=1;AF=0.647;AN=2;DP=1354;MQ=60;set=variant6-variant10-variant11-variant14-variant19-variant20-variant21-variant24-variant25-variant27-variant30-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,46:82:99:1112,0,980:15,21,23,23
chr1	202117975	.	CTT	CTTTT,CTTTTT,C,CTTT,CTTTTTT,CTTTTTTT	198.78	PASS	AC=0,0,0,0,1,0;AF=0.22,0.22,0.04,0.06,0.1,0.02;AN=2;DP=760;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-filterInvariant15-variant19-variant21-variant24-variant25-variant27-variant28-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/5:8:24:0,1,2,5
chr1	202119205	.	C	A	307.36	PASS	AC=1;AF=0.675;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant30-variant31-variant32-variant34-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:442,0,174:4,2,11,1
chr1	202121643	.	G	A	688.48	PASS	AC=1;AF=0.75;AN=2;DP=830;MQ=60;set=variant6-variant10-variant11-variant12-variant13-variant14-variant19-variant20-variant21-variant24-variant25-variant27-variant30-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:599,0,856:21,6,17,3
chr1	202122783	.	C	A	550.99	PASS	AC=1;AF=0.65;AN=2;DP=372;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant7-variant9-variant15-variant18-variant20-variant22-variant23-variant25-variant30-variant31-variant32-variant34-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:410,0,412:10,4,10,3
chr1	202122840	.	G	A	778.81	PASS	AC=1;AF=0.5;AN=2;DP=645;MQ=60;set=variant12-variant13-variant16-variant21-variant24-variant36-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,38:73:99:881,0,895:21,14,23,15
chr1	202128768	.	C	G	532.31	PASS	AC=1;AF=0.55;AN=2;DP=443;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant12-variant13-variant17-variant26-variant29-variant30-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,39:65:99:1077,0,622:12,14,19,20
chr1	202129826	.	T	C	2355.42	PASS	AC=1;AF=0.65;AN=2;DP=3246;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant11-variant12-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,62:134:99:1581,0,1602:36,36,29,33
chr1	202130006	.	C	A	1917.92	PASS	AC=1;AF=0.5;AN=2;DP=441;MQ=60;set=variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,63:116:99:1465,0,1316:25,28,27,36
chr1	202130166	.	G	A	852.84	PASS	AC=2;AF=0.725;AN=2;DP=2341;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1850,176,0:0,0,31,30
chr1	202130754	.	T	C	1289.39	PASS	AC=2;AF=0.738;AN=2;DP=2816;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2381,234,0:0,0,35,43
chr1	202155543	.	A	C	5684.56	PASS	AC=2;AF=0.909;AN=2;DP=9324;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:5938,583,0:0,0,96,99
chr1	202156135	.	C	CCCTCGCTCCTCGCTCCTCGCTCCTCGCT,CCCTCGCT,CCCTCGCTCCTCGCTCCTCGCT,CCCTCGCTCCTCGCT,CCCTCGCTCCTCGCTCCTCGCTCCTCGCTCCTCGCT	785.79	PASS	AC=0,1,0,0,0;AF=0.159,0.511,0.125,0.057,0.023;AN=2;DP=2824;set=Intersection	GT:DP:GQ:SB	0/2:30:99:3,8,9,10
chr1	202156161	.	G	GCTCCTCGCTCCTCGCTCCTCGCTCCTCA	485.09	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=7.569;FractionInformativeReads=0.692;MQ=60;MQRankSum=-0.373;QD=9.33;ReadPosRankSum=-3.359;SOR=2.007;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:522,0,824:10,12,3,11
chr1	202156482	.	G	A	2307.92	PASS	AC=1;AF=0.886;AN=2;DP=4825;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,67:114:99:1546,0,1186:32,15,37,30
chr1	202156628	.	A	C	2701.97	PASS	AC=2;AF=0.898;AN=2;DP=4743;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,101:102:99:3089,264,0:0,1,41,60
chr1	202163063	.	T	C	2031.84	PASS	AC=1;AF=0.886;AN=2;DP=3121;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,35:59:99:907,0,648:9,15,15,20
chr1	202163364	.	C	G	276.52	PASS	AC=1;AF=0.875;AN=2;DP=1101;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:350,0,497:10,10,8,4
chr1	202163516	.	C	A	4017.32	PASS	AC=1;AF=0.886;AN=2;DP=5241;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:70,60:130:99:1421,0,1939:48,22,37,23
chr1	202163621	.	G	A	1947.27	PASS	AC=1;AF=0.636;AN=2;DP=7068;set=variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:100,116:216:99:2575,0,2288:50,50,56,60
chr1	202183308	.	C	T	1661.26	PASS	AC=2;AF=0.719;AN=2;DP=4854;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4064,386,0:0,0,54,75
chr1	202183357	.	TG	T	1529.64	PASS	AC=1;AF=0.5;AN=2;DP=415;MQ=60;set=variant2-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,37:96:99:1201,0,2094:23,36,13,24
chr1	202194441	.	G	C	271.37	PASS	AC=1;AF=0.673;AN=2;DP=796;MQ=60;set=variant-variant3-variant6-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,29:47:99:807,0,470:14,4,21,8
chr1	202196931	.	G	A	2053.34	PASS	AC=1;AF=0.83;AN=2;DP=2683;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:620,0,482:13,6,15,7
chr1	202266547	.	C	T	3287.08	PASS	AC=1;AF=0.718;AN=2;DP=5766;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,100:182:99:2511,0,1973:40,42,56,44
chr1	202276556	.	G	A	543.63	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:572,0,621:11,14,7,17
chr1	202287156	.	C	T	1748.99	PASS	AC=1;AF=0.5;AN=2;DP=2723;MQ=60;set=variant2-variant5-variant16-variant20-variant21-variant28-variant29-variant30-variant33-variant34-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,89:199:99:2280,0,2925:53,57,50,39
chr1	202287206	.	T	C	4106.87	PASS	AC=1;AF=0.705;AN=2;DP=7427;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,75:171:99:2040,0,2365:45,51,38,37
chr1	202287754	.	G	A	2664.73	PASS	AC=1;AF=0.5;AN=2;DP=3947;MQ=60;set=variant2-variant5-variant16-variant20-variant21-variant28-variant29-variant30-variant33-variant34-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:149,150:299:99:4105,0,3853:69,80,74,76
chr1	202287813	.	T	C	7469.02	PASS	AC=1;AF=0.705;AN=2;DP=10725;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:171,146:317:99:3789,0,4603:81,90,66,80
chr1	202288462	.	C	A	2219.92	PASS	AC=1;AF=0.705;AN=2;DP=2927;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,35:83:99:861,0,1341:22,26,16,19
chr1	202304868	.	T	C	1650.67	PASS	AC=1;AF=0.592;AN=2;DP=4581;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,57:132:99:1183,0,1955:38,37,28,29
chr1	202386075	.	T	C	1783.26	PASS	AC=2;AF=0.989;AN=2;DP=3673;MQRankSum=-1.183;ReadPosRankSum=-0.055;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2027,194,0:0,0,22,43
chr1	202400810	.	G	A	179.92	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=59.73;MQRankSum=0.704;QD=5;ReadPosRankSum=-0.78;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,8:36:99:208,0,772:9,19,2,6
chr1	202411746	.	A	G	732.45	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=0.998;FractionInformativeReads=1;MQ=60;MQRankSum=0.817;QD=11.81;ReadPosRankSum=-1.042;SOR=0.471;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:761,0,747:11,20,13,18
chr1	202464280	.	G	A	407.15	PASS	AC=1;AF=0.571;AN=2;DP=511;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:174,0,262:7,0,5,0
chr1	202531741	.	C	T	239.91	PASS	AC=1;AF=0.571;AN=2;DP=793;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:301,0,220:6,4,7,4
chr1	202533682	.	C	T	980.51	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=1.655;FractionInformativeReads=1;MQ=60;MQRankSum=-1.467;QD=9.9;ReadPosRankSum=0.742;SOR=0.516;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,41:99:99:1009,0,1462:24,34,19,22
chr1	202550272	.	G	A	754.51	PASS	AC=1;AF=0.7;AN=2;DP=2931;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,46:83:99:1151,0,903:18,19,20,26
chr1	202550547	.	G	A	465.78	PASS	AC=1;AF=0.679;AN=2;DP=2085;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:590,0,568:11,12,13,12
chr1	202552100	.	G	A	2624.05	PASS	AC=1;AF=0.679;AN=2;DP=6429;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,74:157:99:1911,0,2321:59,24,52,22
chr1	202552302	.	T	C	8258.28	PASS	AC=2;AF=1;AN=2;DP=9611;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,217:217:99:7062,650,0:0,0,76,141
chr1	202552839	.	T	C	674.71	PASS	AC=1;AF=0.692;AN=2;DP=2081;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,31:74:99:882,0,1129:18,25,14,17
chr1	202553947	.	C	T	521.04	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.122;QD=13.03;ReadPosRankSum=2.069;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:549,0,497:12,8,12,8
chr1	202556499	.	C	A	304.45	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=1.186;FractionInformativeReads=1;MQ=60;MQRankSum=-0.405;QD=5.74;ReadPosRankSum=-0.306;SOR=0.66;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,15:53:99:333,0,1114:17,21,8,7
chr1	202560412	.	T	C	1233.11	PASS	AC=1;AF=0.688;AN=2;DP=4566;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,40:89:99:1008,0,1371:22,27,18,22
chr1	202560658	.	A	G	1422.49	PASS	AC=1;AF=0.692;AN=2;DP=5192;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,77:128:99:1962,0,1195:30,21,40,37
chr1	202560681	.	T	G	1611.18	PASS	AC=1;AF=0.692;AN=2;DP=6135;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,84:151:99:2076,0,1694:40,27,46,38
chr1	202561095	.	C	G	951.54	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=5.896;FractionInformativeReads=1;MQ=60;MQRankSum=1.395;QD=12.2;ReadPosRankSum=-2.634;SOR=0.843;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,40:78:99:980,0,998:22,16,17,23
chr1	202561474	.	C	T	593.79	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=2.323;FractionInformativeReads=1;MQ=60;MQRankSum=1.824;QD=11.2;ReadPosRankSum=0.578;SOR=0.537;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,27:53:99:622,0,712:11,15,14,13
chr1	202561973	.	C	T	78.38	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.922;QD=9.8;ReadPosRankSum=-0.922;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:107,0,150:2,2,1,3
chr1	202562427	.	G	A	1291.05	PASS	AC=1;AF=0.652;AN=2;DP=2934;MQ=60;set=variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,51:91:99:1323,0,1034:15,25,28,23
chr1	202563829	.	TAC	TACAC,TACACACACACACACACAC,TACACACACACACAC,TACACACACACACACACACACAC,T,TACACACACACACACACACAC,TACACACACAC,TACACACACACACACACACACACACACAC,TACACACACACACACAC,TACACACACACAC,TACACACACACACACACACACACAC,TACACACAC	498.81	PASS	AC=0,0,0,0,0,0,0,0,0,0,0,2;AF=0.192,0.244,0.064,0.064,0.013,0.128,0.026,0.013,0.051,0.026,0.013,0.026;AN=2;DP=1042;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	12/12:34:99:0,0,17,17
chr1	202563966	.	C	T	190.6	PASS	AC=2;AF=0.6;AN=2;DP=99;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant16-variant23-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:486,45,0:0,0,4,11
chr1	202564040	.	C	A	109.62	PASS	AC=2;AF=0.6;AN=2;DP=103;MQ=60;set=variant12-variant15-variant16-variant23-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:884,81,0:0,0,14,13
chr1	202564330	.	A	T	253.35	PASS	AC=2;AF=0.705;AN=2;DP=2027;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2179,214,0:0,0,40,32
chr1	202565396	.	GACACACAC	G	460.39	PASS	AC=2;AF=1;AN=2;DP=16;FS=0;FractionInformativeReads=0.625;MQ=60;QD=28.77;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:31:444,31,0:0,0,2,8
chr1	202565436	.	TACACACACAC	TACACACACACACACACACACAC,T	79.22	PASS	AC=0,2;AF=0.25,0.5;AN=2;DP=38;MQRankSum=0;ReadPosRankSum=-2.152;set=variant17-variant41	GT:DP:GQ:SB	2/2:20:59:0,0,10,10
chr1	202565747	.	AAAAC	A	925.89	PASS	AC=2;AF=0.6;AN=2;DP=259;MQ=60;set=variant12-variant15-variant16-variant23-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2763,188,0:0,0,36,27
chr1	202569555	.	C	T	3343.42	PASS	AC=2;AF=1;AN=2;DP=104;FS=0;FractionInformativeReads=1;MQ=60;QD=32.15;SOR=1.257;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3372,310,0:0,0,64,40
chr1	202572105	.	GCC	G	250.95	PASS	AC=2;AF=0.692;AN=2;DP=2567;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2211,160,0:0,0,22,31
chr1	202697335	.	G	A	1367.96	PASS	AC=1;AF=0.5;AN=2;DP=257;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:78,54:132:99:1396,0,2099:42,36,34,20
chr1	202700904	.	T	G	699.86	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=3.183;FractionInformativeReads=0.978;MQ=60;MQRankSum=-1.128;QD=15.55;ReadPosRankSum=0.094;SOR=1.402;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:728,0,594:15,6,19,4
chr1	202701097	.	A	C	572.23	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=2.363;FractionInformativeReads=1;MQ=60;MQRankSum=0.314;QD=10.04;ReadPosRankSum=0.217;SOR=0.395;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,25:57:99:600,0,811:10,22,10,15
chr1	202703053	.	G	A	1764.81	PASS	AC=1;AF=0.83;AN=2;DP=3060;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:44,43:87:99:1148,0,1092:16,28,13,30
chr1	202703075	.	CAG	C	1090.56	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=4.464;FractionInformativeReads=0.951;MQ=60;MQRankSum=-0.731;QD=17.88;ReadPosRankSum=-1.12;SOR=1.597;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:1128,0,1124:9,20,5,24
chr1	202705455	.	G	C	2324.42	PASS	AC=1;AF=0.798;AN=2;DP=3676;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,44:99:99:1059,0,1334:29,26,21,23
chr1	202715244	.	G	GA	1197.03	PASS	AC=1;AF=0.798;AN=2;DP=1894;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:453,0,321:7,7,11,8
chr1	202715284	.	G	A	1665.83	PASS	AC=1;AF=0.798;AN=2;DP=2870;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:711,0,718:17,12,15,12
chr1	202718028	.	A	G	1038.73	PASS	AC=1;AF=0.788;AN=2;DP=785;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:512,0,529:14,0,14,0
chr1	202718202	.	G	A	4302.04	PASS	AC=1;AF=0.788;AN=2;DP=6174;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,79:167:99:1893,0,2258:43,45,36,43
chr1	202722277	.	G	A	922.32	PASS	AC=1;AF=0.788;AN=2;DP=1365;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,14:46:99:336,0,884:10,22,3,11
chr1	202722348	.	A	G	201.22	PASS	AC=1;AF=0.857;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:99:133,0,367:3,9,1,4
chr1	202731986	.	C	CCTCAA	491.94	PASS	AC=1;AF=0.825;AN=2;DP=504;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:159,0,200:0,3,0,4
chr1	202733238	.	C	T	2893.82	PASS	AC=1;AF=0.798;AN=2;DP=4445;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,56:122:99:1241,0,1547:33,33,29,27
chr1	202735751	.	T	C	6914.51	PASS	AC=1;AF=0.788;AN=2;DP=8789;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,118:226:99:2866,0,2373:56,52,67,51
chr1	202746368	.	T	C	48.19	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.406;QD=8.03;ReadPosRankSum=0.988;SOR=0.132;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:76:76,0,106:0,3,1,2
chr1	202777757	.	A	T	1248	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.166;QD=14.86;ReadPosRankSum=0.777;SOR=0.677;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,46:84:99:1276,0,1066:20,18,24,22
chr1	202777784	.	A	T	1993.39	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.47;QD=19.74;ReadPosRankSum=-1.858;SOR=0.641;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,52:101:99:2022,0,2595:28,21,29,23
chr1	202777786	.	T	C	1993.39	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=0.737;FractionInformativeReads=1;MQ=60;MQRankSum=0.398;QD=19.54;ReadPosRankSum=-0.104;SOR=0.61;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,52:102:99:2022,0,2595:29,21,29,23
chr1	202778261	.	G	A	1866.25	PASS	AC=1;AF=0.852;AN=2;DP=2474;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,27:51:99:715,0,663:9,15,12,15
chr1	202794330	.	GA	G	1360.35	PASS	AC=1;AF=0.5;AN=2;DP=555;MQ=60;set=variant6-variant9-variant16-variant19-variant29-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,30:61:99:913,0,960:19,12,20,10
chr1	202794922	.	A	G	2129.42	PASS	AC=1;AF=0.5;AN=2;DP=181;FS=0.544;FractionInformativeReads=0.994;MQ=60;MQRankSum=0.9;QD=11.76;ReadPosRankSum=3.618;SOR=0.65;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:90,90:180:99:2158,0,2331:40,50,41,49
chr1	202848587	.	G	A	207.7	PASS	AC=2;AF=0.769;AN=2;DP=1423;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1143,99,0:0,0,19,14
chr1	202849606	.	C	T	6007.8	PASS	AC=2;AF=0.989;AN=2;DP=7549;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4432,455,0:0,0,80,73
chr1	202849723	.	G	A	1277.54	PASS	AC=2;AF=0.769;AN=2;DP=3635;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2927,268,0:0,0,30,60
chr1	202849770	.	T	C	935.06	PASS	AC=2;AF=0.769;AN=2;DP=2008;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1657,141,0:0,0,16,31
chr1	202850454	.	C	CA	298.63	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=7.752;FractionInformativeReads=0.953;MQ=60;MQRankSum=1.15;QD=6.94;ReadPosRankSum=-0.717;SOR=2.044;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,15:41:99:336,0,672:9,17,2,13
chr1	202861211	.	G	GAA,GA	547.4	PASS	AC=1,1;AF=0.727,0.159;AN=2;DP=1235;set=Intersection	GT:DP:GQ:SB	2/1:21:99:0,1,2,18
chr1	202861813	.	G	A	681.22	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=4.979;FractionInformativeReads=1;MQ=60;MQRankSum=0.051;QD=10.32;ReadPosRankSum=-1.812;SOR=0.286;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,31:66:99:709,0,958:12,23,15,16
chr1	202866245	.	G	A	396.23	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=8.039;FractionInformativeReads=1;MQ=60;MQRankSum=0.769;QD=13.21;ReadPosRankSum=-1.85;SOR=0.073;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:424,0,515:1,15,4,10
chr1	202878454	.	T	A	391.47	PASS	AC=1;AF=0.75;AN=2;DP=519;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:236,0,301:2,8,1,7
chr1	202889207	.	T	C	90.3	PASS	AC=2;AF=1;AN=2;DP=300;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:131,12,0:0,0,1,3
chr1	202896414	.	T	TC	1008.3	PASS	AC=1;AF=0.618;AN=2;DP=611;MQ=60;set=variant-variant11-variant16-variant17-variant23-variant24-variant25-variant27-variant29-variant30-variant33-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,28:36:99:756,0,141:3,5,14,14
chr1	202897431	.	A	G	729.62	PASS	AC=1;AF=0.75;AN=2;DP=463;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:410,0,248:7,1,11,2
chr1	202897567	.	G	C	1179.16	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=3.483;FractionInformativeReads=1;MQ=60;MQRankSum=-0.201;QD=10.53;ReadPosRankSum=-1.17;SOR=0.562;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,52:112:99:1207,0,1525:34,26,25,27
chr1	202915940	.	TA	T	64.88	PASS	AC=1;AF=0.5;AN=2;DP=166;MQ=60;set=variant4-variant6-variant9-variant12-variant25-variant28-variant29-variant30-variant31-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:67:96,0,67:1,3,1,4
chr1	202920300	.	A	C	1186.77	PASS	AC=1;AF=0.622;AN=2;DP=1648;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,30:56:99:1181,0,1374:9,17,12,18
chr1	202920304	.	T	C	1186.77	PASS	AC=1;AF=0.618;AN=2;DP=1629;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:1187,0,1331:7,15,12,18
chr1	202927501	.	T	C	599.14	PASS	AC=2;AF=0.92;AN=2;DP=1137;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:193,21,0:0,0,4,3
chr1	202931839	.	G	A	1547.38	PASS	AC=1;AF=0.583;AN=2;DP=3533;set=variant-variant2-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,61:115:99:1527,0,1387:22,32,26,35
chr1	202931958	.	G	A	470.94	PASS	AC=1;AF=0.6;AN=2;DP=1168;MQ=60;set=variant-variant6-variant8-variant9-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant28-variant29-variant31-variant35-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:934,0,815:15,13,16,15
chr1	202931998	.	C	A	635.33	PASS	AC=1;AF=0.578;AN=2;DP=2175;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,30:71:99:820,0,1088:22,19,18,12
chr1	202933657	.	T	A	550.67	PASS	AC=1;AF=0.589;AN=2;DP=1619;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:668,0,860:20,11,19,9
chr1	202933992	.	G	C	690.92	PASS	AC=1;AF=0.578;AN=2;DP=1344;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,30:56:99:788,0,707:8,18,12,18
chr1	202934764	.	TC	T	242.69	PASS	AC=1;AF=0.515;AN=2;DP=1053;set=variant-variant2-filterInvariant5-variant7-variant8-variant9-variant10-filterInvariant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:220,0,209:7,4,5,7
chr1	202934765	.	C	T	122.34	PASS	AC=1;AF=0.583;AN=2;DP=882;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant16-variant18-variant20-filterInvariant21-variant23-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:146,0,312:6,9,6,2
chr1	202936456	.	G	C	192.99	PASS	AC=1;AF=0.639;AN=2;DP=197;MQ=60;set=variant-variant6-variant8-variant9-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant28-variant29-variant31-variant35-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:113,0,166:0,5,0,4
chr1	202977809	.	G	A	938.88	PASS	AC=1;AF=0.55;AN=2;DP=887;set=variant2-variant13-variant17-variant20-variant21-variant33-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,40:88:99:938,0,1002:25,23,26,14
chr1	202978032	.	C	G	490.39	PASS	AC=1;AF=0.672;AN=2;DP=1057;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:626,0,337:6,9,8,15
chr1	202987770	.	T	C	933.83	PASS	AC=1;AF=0.62;AN=2;DP=1976;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant12-variant14-variant17-variant18-variant22-variant25-variant26-variant27-variant29-variant30-variant32-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,38:79:99:892,0,1060:17,24,15,23
chr1	202987796	.	G	A	795.44	PASS	AC=1;AF=0.62;AN=2;DP=1690;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant12-variant14-variant17-variant18-variant22-variant25-variant26-variant27-variant29-variant30-variant32-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:816,0,812:13,20,11,21
chr1	202990110	.	CTTTT	CTTT,CT,CTTTTT,C,CTT	51.61	PASS	AC=0,1,0,0,0;AF=0.195,0.341,0.037,0.012,0.012;AN=2;DP=3048;set=filterInvariant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-filterInvariant15-filterInvariant16-variant17-variant18-variant20-filterInvariant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/2:59:99:8,24,6,21
chr1	202992954	.	T	C	3204.16	PASS	AC=1;AF=0.563;AN=2;DP=1930;MQ=60;set=variant2-variant13-variant17-variant21-variant33-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:104,126:230:99:3268,0,2835:33,71,47,79
chr1	202993198	.	C	A	1747.83	PASS	AC=1;AF=0.62;AN=2;DP=3250;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant12-variant14-variant17-variant18-variant22-variant25-variant26-variant27-variant29-variant30-variant32-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,42:121:99:979,0,2035:39,40,21,21
chr1	202993608	.	A	AT,ATT,ATTT	694.3	PASS	AC=0,0,1;AF=0.406,0.063,0.031;AN=2;DP=2184;set=variant7-variant8-filterInvariant9-filterInvariant12-variant13-variant17-variant18-variant22-variant25-filterInvariant27-filterInvariant29-variant35-filterInvariant40-variant41-filterInvariant42-variant44	GT:DP:GQ:SB	0/3:81:99:21,34,10,16
chr1	202993614	.	G	T	715.89	PASS	AC=1;AF=0.522;AN=2;DP=3214;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant12-variant13-variant17-variant18-variant22-variant25-variant27-variant29-variant32-variant33-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,72:89:99:1961,0,136:6,11,27,45
chr1	202993848	.	G	A	616.69	PASS	AC=1;AF=0.62;AN=2;DP=1140;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant12-variant14-variant17-variant18-variant22-variant25-variant26-variant27-variant29-variant30-variant32-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,24:51:99:501,0,655:13,14,12,12
chr1	202994055	.	T	G	201.9	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.831;QD=16.83;ReadPosRankSum=-1.461;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:230,0,175:1,4,2,5
chr1	202995581	.	CG	CGG,CGGG,C	39.65	PASS	AC=1,0,0;AF=0.569,0.017,0.017;AN=2;DP=369;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant22-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:13:94:4,0,8,1
chr1	203004627	.	A	AC	1450.99	PASS	AC=2;AF=1;AN=2;DP=2819;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1970,189,0:0,0,35,28
chr1	203004980	.	CT	C	225.09	PASS	AC=1;AF=0.989;AN=2;DP=534;FS=0;MQ=60;MQRankSum=-0.053;ReadPosRankSum=1.107;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,12:17:99:398,0,136:0,5,1,11
chr1	203006243	.	A	G	7004.81	PASS	AC=1;AF=0.989;AN=2;DP=8799;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:103,95:198:99:2236,0,2466:59,44,48,47
chr1	203008174	.	G	C	2136.06	PASS	AC=2;AF=1;AN=2;DP=5182;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3052,317,0:0,0,49,57
chr1	203008286	.	C	G	270.6	PASS	AC=1;AF=0.725;AN=2;DP=2327;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:619,0,840:13,21,10,17
chr1	203012705	.	C	G	748.7	PASS	AC=1;AF=0.639;AN=2;DP=3741;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,41:91:99:1097,0,1364:16,34,14,27
chr1	203012906	.	G	A	498.49	PASS	AC=1;AF=0.791;AN=2;DP=2424;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:630,0,785:18,9,17,10
chr1	203014196	.	T	C	259.59	PASS	AC=1;AF=0.703;AN=2;DP=359;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:76:76,0,105:3,0,2,1
chr1	203014883	.	A	G	528.55	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=6.18;FractionInformativeReads=1;MQ=60;MQRankSum=0.214;QD=10.57;ReadPosRankSum=-1.304;SOR=1.68;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:557,0,855:15,12,17,6
chr1	203025004	.	G	A	252.98	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.063;QD=8.16;ReadPosRankSum=2.092;SOR=0.973;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,10:31:99:281,0,525:10,11,4,6
chr1	203030879	.	G	A	1336.74	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.372;QD=12.49;ReadPosRankSum=1.545;SOR=0.7;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,57:107:99:1365,0,1273:22,28,25,32
chr1	203040673	.	A	G	1028.4	PASS	AC=2;AF=1;AN=2;DP=1097;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:983,78,0:0,0,21,5
chr1	203040740	.	T	C	615.58	PASS	AC=1;AF=0.725;AN=2;DP=2838;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,35:73:99:927,0,1021:26,12,23,12
chr1	203040816	.	G	C	1110.68	PASS	AC=1;AF=0.725;AN=2;DP=6121;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,65:139:99:1573,0,1828:42,32,34,31
chr1	203040922	.	G	T	1194.53	PASS	AC=1;AF=0.6;AN=2;DP=3148;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant16-variant19-variant20-variant22-variant25-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,64:144:99:1389,0,1933:32,48,28,36
chr1	203047080	.	C	T	737.96	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=12.447;FractionInformativeReads=1;MQ=60;MQRankSum=-0.471;QD=12.72;ReadPosRankSum=-0.738;SOR=2.203;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,25:58:99:766,0,813:17,16,6,19
chr1	203047621	.	C	A	531.66	PASS	AC=2;AF=0.791;AN=2;DP=2416;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,55:56:99:1775,158,0:0,1,22,33
chr1	203052360	.	A	G	247.45	PASS	AC=2;AF=1;AN=2;DP=682;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:602,51,0:0,0,14,3
chr1	203052922	.	C	T	610.88	PASS	AC=1;AF=0.5;AN=2;DP=239;MQ=60;set=variant6-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,45:74:99:1277,0,732:17,12,29,16
chr1	203053768	.	T	C	1986.45	PASS	AC=2;AF=0.977;AN=2;DP=3787;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3159,326,0:0,0,58,51
chr1	203055101	.	A	G	2847.53	PASS	AC=1;AF=0.727;AN=2;DP=5283;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,101:187:99:2588,0,2103:36,50,38,63
chr1	203059728	.	T	C	760.95	PASS	AC=2;AF=0.763;AN=2;DP=1643;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1308,129,0:0,0,25,18
chr1	203134135	.	A	AT	278.85	PASS	AC=2;AF=0.525;AN=2;DP=661;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant13-variant14-variant17-variant20-variant27-variant30-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:585,54,0:0,0,15,3
chr1	203135325	.	A	C	1317.37	PASS	AC=2;AF=0.966;AN=2;DP=3325;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1905,177,0:0,0,34,25
chr1	203135840	.	CT	C	2090.39	PASS	AC=2;AF=0.966;AN=2;DP=3179;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2595,213,0:0,0,40,31
chr1	203136983	.	A	T	812.82	PASS	AC=2;AF=0.764;AN=2;DP=2465;MQ=60;set=variant2-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2035,202,0:0,0,46,22
chr1	203137784	.	A	ACT	2292.17	PASS	AC=2;AF=0.917;AN=2;DP=3314;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:3634,244,0:0,0,54,26
chr1	203143725	.	G	C	372.24	PASS	AC=2;AF=0.528;AN=2;DP=1168;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant13-variant14-variant17-variant27-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1851,171,0:0,0,24,33
chr1	203148633	.	A	G	1941.93	PASS	AC=2;AF=1;AN=2;DP=4278;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2971,281,0:0,0,46,48
chr1	203150208	.	G	A	847.61	PASS	AC=1;AF=0.563;AN=2;DP=443;MQ=60;set=variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant17-variant23-variant27-variant35-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:298,0,325:9,1,10,1
chr1	203151794	.	G	C	669.33	PASS	AC=1;AF=0.5;AN=2;DP=210;FractionInformativeReads=1;MQ=60;set=variant10-variant23-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,33:60:99:898,0,732:17,10,22,11
chr1	203153813	.	C	G	872.76	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=2.233;FractionInformativeReads=1;MQ=60;MQRankSum=3.012;QD=14.31;ReadPosRankSum=-0.911;SOR=1.071;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,35:61:99:901,0,639:11,15,12,23
chr1	203155703	.	A	T	2481.55	PASS	AC=1;AF=0.531;AN=2;DP=2811;MQ=60;set=variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant17-variant27-variant35-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,63:145:99:1320,0,1888:47,35,33,30
chr1	203155882	.	G	C	2134.7	PASS	AC=1;AF=0.81;AN=2;DP=4309;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,45:74:99:1107,0,763:9,20,18,27
chr1	203155998	.	G	A	470.71	PASS	AC=1;AF=0.538;AN=2;DP=252;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant10-variant11-variant14-variant17-variant27-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,6:20:99:182,0,389:4,10,0,6
chr1	203175057	.	G	A	1541.51	PASS	AC=1;AF=0.5;AN=2;DP=117;FS=3.437;FractionInformativeReads=1;MQ=60;MQRankSum=-1.972;QD=13.18;ReadPosRankSum=0.069;SOR=1.047;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,65:117:99:1570,0,1176:24,28,25,40
chr1	203175107	.	A	C	435.88	PASS	AC=2;AF=0.672;AN=2;DP=1426;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2194,204,0:0,0,21,47
chr1	203175151	.	A	G	560.46	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=1.524;FractionInformativeReads=1;MQ=60;MQRankSum=1.697;QD=16.48;ReadPosRankSum=-0.577;SOR=0.412;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:589,0,388:3,11,6,14
chr1	203185483	.	A	C	311.93	PASS	AC=1;AF=0.5;AN=2;DP=74;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:340,0,627:13,7,8,8
chr1	203188692	.	A	C	645.75	PASS	AC=1;AF=0.656;AN=2;DP=2119;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,57:97:99:1345,0,1049:27,13,32,25
chr1	203191262	.	C	G	577.89	PASS	AC=1;AF=0.5;AN=2;DP=425;MQ=60;set=variant4-variant5-variant6-variant12-variant14-variant21-variant23-variant25-variant28-variant29-variant32-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,9:32:99:294,0,723:19,4,9,0
chr1	203192448	.	GC	G	401.35	PASS	AC=1;AF=0.5;AN=2;DP=381;MQ=60;set=variant4-variant5-variant12-variant14-variant21-variant23-variant25-variant29-variant32-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,25:39:99:744,0,353:3,11,5,20
chr1	203274618	.	G	A	721.75	PASS	AC=2;AF=0.542;AN=2;DP=511;MQ=60;set=variant7-variant10-variant13-variant21-variant26-variant28-variant30-variant33-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:966,87,0:0,0,22,7
chr1	203274936	.	G	A	396.77	PASS	AC=2;AF=0.542;AN=2;DP=273;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant13-variant21-variant26-variant28-variant30-variant33-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1187,99,0:0,0,8,25
chr1	203277244	.	AG	A	636.23	PASS	AC=2;AF=1;AN=2;DP=1701;FS=0;MQ=60;MQRankSum=1.141;ReadPosRankSum=0.465;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1714,117,0:0,0,25,13
chr1	203277248	.	G	C	721.69	PASS	AC=2;AF=0.542;AN=2;DP=472;MQ=60;set=variant7-variant10-variant13-variant21-variant26-variant28-variant30-variant33-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1714,117,0:0,0,25,14
chr1	203309966	.	G	C	798.26	PASS	AC=2;AF=0.681;AN=2;DP=1183;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:910,87,0:0,0,16,13
chr1	203311736	.	T	C	476.9	PASS	AC=2;AF=0.7;AN=2;DP=850;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant28-variant30-variant33-variant34-variant35-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1334,111,0:0,0,8,29
chr1	203317162	.	C	T	4701.78	PASS	AC=1;AF=0.857;AN=2;DP=6656;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,67:137:99:1733,0,1915:36,34,35,32
chr1	203317208	.	G	A	2041.19	PASS	AC=1;AF=0.5;AN=2;DP=163;FS=1.224;FractionInformativeReads=1;MQ=60;MQRankSum=3.782;QD=12.52;ReadPosRankSum=-0.556;SOR=0.822;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:82,81:163:99:2069,0,2112:42,40,44,37
chr1	203320408	.	G	C	1806.64	PASS	AC=2;AF=0.915;AN=2;DP=2600;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1533,159,0:0,0,30,23
chr1	203452226	.	T	C	674.14	PASS	AC=1;AF=0.583;AN=2;DP=935;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant18-variant20-variant23-variant26-variant30-variant31-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,37:74:99:829,0,1017:23,14,19,18
chr1	203456098	.	T	C	923.52	PASS	AC=1;AF=0.583;AN=2;DP=870;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant18-variant20-variant23-variant26-variant30-variant31-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,30:70:99:814,0,961:19,21,15,15
chr1	203456221	.	C	A	1274.24	PASS	AC=1;AF=0.583;AN=2;DP=1234;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant18-variant20-variant23-variant26-variant30-variant31-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,35:89:99:909,0,1480:28,26,17,18
chr1	203456890	.	G	GGCA	1318.78	PASS	AC=2;AF=0.694;AN=2;DP=3021;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:3464,231,0:0,0,36,40
chr1	203457361	.	C	T	701.23	PASS	AC=1;AF=0.591;AN=2;DP=401;FractionInformativeReads=1;set=variant4-variant10-variant18-variant20-variant26-variant30-variant31-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:309,0,501:9,11,3,10
chr1	203457961	.	T	C	1276.41	PASS	AC=1;AF=0.571;AN=2;DP=1473;MQ=60;set=variant4-variant7-variant10-variant18-variant20-variant23-variant26-variant30-variant31-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,54:109:99:1314,0,1387:28,27,22,32
chr1	203458037	.	A	T	535.53	PASS	AC=1;AF=0.577;AN=2;DP=691;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant18-variant20-variant23-variant26-variant30-variant31-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,24:62:99:639,0,1062:16,22,8,16
chr1	203458407	.	T	C	1052.49	PASS	AC=1;AF=0.604;AN=2;DP=2841;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,54:111:99:1317,0,1339:30,27,28,26
chr1	203459402	.	A	T	74.47	PASS	AC=2;AF=0.714;AN=2;DP=237;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:148,18,0:0,0,3,3
chr1	203459566	.	C	T	211.2	PASS	AC=1;AF=0.591;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant18-variant20-variant23-variant26-variant31-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:407,0,435:11,10,11,5
chr1	203459718	.	G	A	278.98	PASS	AC=1;AF=0.604;AN=2;DP=1137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,20:33:99:560,0,393:7,6,13,7
chr1	203465392	.	T	G	1174.94	PASS	AC=1;AF=0.5;AN=2;DP=1133;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant10-variant11-variant17-variant28-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,59:122:99:1465,0,2429:26,37,24,35
chr1	203465396	.	T	C	4299.44	PASS	AC=1;AF=0.63;AN=2;DP=3131;MQ=60;set=variant3-variant4-variant5-variant7-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,61:119:99:1459,0,2275:23,35,27,34
chr1	203465570	.	C	G	198.14	PASS	AC=2;AF=0.691;AN=2;DP=592;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:739,72,0:0,0,8,16
chr1	203466349	.	G	A	188.76	PASS	AC=1;AF=0.5;AN=2;DP=159;MQ=60;set=variant2-variant4-variant6-variant10-variant11-variant17-variant28-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:302,0,262:3,7,2,8
chr1	203468165	.	C	A	356.83	PASS	AC=1;AF=0.583;AN=2;DP=351;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant18-variant20-variant23-variant26-variant30-variant31-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,8:29:99:151,0,670:7,14,3,5
chr1	203472112	.	T	C	465.5	PASS	AC=1;AF=0.5;AN=2;DP=911;MQ=60;set=variant-variant4-variant6-variant10-variant11-variant17-variant28-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,53:101:99:1401,0,1160:18,30,23,30
chr1	203472941	.	A	G	1274.72	PASS	AC=1;AF=0.5;AN=2;DP=849;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant10-variant11-variant17-variant28-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,62:106:99:1638,0,1119:12,32,25,37
chr1	203473044	.	T	C	468.79	PASS	AC=2;AF=0.681;AN=2;DP=1025;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:918,75,0:0,0,3,22
chr1	203651824	.	C	T	649.9	PASS	AC=2;AF=0.919;AN=2;DP=1036;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:724,66,0:0,0,14,8
chr1	203651927	.	T	C	1688.98	PASS	AC=2;AF=0.919;AN=2;DP=2525;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2384,240,0:0,0,45,35
chr1	203652040	.	T	C	1363.09	PASS	AC=2;AF=0.919;AN=2;DP=2593;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2466,216,0:0,0,37,35
chr1	203652140	.	C	G	1212.27	PASS	AC=2;AF=0.919;AN=2;DP=2137;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2549,172,0:0,0,26,31
chr1	203652141	.	G	A	1212.27	PASS	AC=2;AF=0.919;AN=2;DP=2125;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2549,172,0:0,0,26,31
chr1	203652444	.	A	G	3234.51	PASS	AC=2;AF=0.919;AN=2;DP=5550;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3585,354,0:0,0,58,60
chr1	203667409	.	T	C	3987.4	PASS	AC=2;AF=0.919;AN=2;DP=7625;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:5928,592,0:0,0,97,101
chr1	203667536	.	A	G	1421.92	PASS	AC=1;AF=0.553;AN=2;DP=2079;MQ=60;set=variant4-variant10-variant11-variant12-variant13-variant16-variant18-variant22-variant23-variant24-variant25-variant28-variant31-variant32-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,36:99:99:912,0,1558:25,38,11,25
chr1	203670128	.	A	T	221.9	PASS	AC=1;AF=0.559;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant11-variant12-variant13-variant16-variant18-variant22-variant24-variant25-variant31-variant32-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:268,0,245:1,9,3,6
chr1	203670179	.	A	G	147.46	PASS	AC=1;AF=0.536;AN=2;DP=165;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant12-variant13-variant16-variant18-variant24-variant25-variant31-variant32-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:70:70,0,135:0,5,0,2
chr1	203677220	.	C	T	919.3	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.467;QD=9.29;ReadPosRankSum=2.724;SOR=0.685;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,41:99:99:948,0,1495:24,34,17,24
chr1	203679934	.	A	G	1491.09	PASS	AC=2;AF=0.733;AN=2;DP=3678;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3987,365,0:0,0,74,48
chr1	203681255	.	C	T	971.77	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=0.867;FractionInformativeReads=1;MQ=60;MQRankSum=-0.116;QD=11.57;ReadPosRankSum=1.11;SOR=0.538;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,41:84:99:1000,0,1138:14,29,15,26
chr1	203689526	.	A	G	690.58	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=1.141;FractionInformativeReads=1;MQ=60;MQRankSum=0.293;QD=13.28;ReadPosRankSum=-1.044;SOR=0.996;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,27:52:99:719,0,673:16,9,19,8
chr1	203689936	.	C	G	715.14	PASS	AC=1;AF=0.625;AN=2;DP=1067;set=variant-variant3-variant6-variant7-variant14-variant19-variant20-variant22-variant25-variant26-variant30-variant32-variant35-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,37:64:99:1060,0,581:13,14,12,25
chr1	203696609	.	C	T	1602.91	PASS	AC=1;AF=0.5;AN=2;DP=151;FS=2.087;FractionInformativeReads=1;MQ=60;MQRankSum=1.976;QD=10.62;ReadPosRankSum=0.274;SOR=0.529;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,70:151:99:1631,0,2198:30,51,29,41
chr1	203697464	.	C	T	1243.99	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=1.019;FractionInformativeReads=1;MQ=60;MQRankSum=-0.383;QD=17.77;ReadPosRankSum=-1.112;SOR=0.96;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,44:70:99:1272,0,673:9,17,13,31
chr1	203698672	.	CAA	CA,CAAA,C	226.51	PASS	AC=0,1,0;AF=0.449,0.064,0.064;AN=2;DP=1533;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:DP:GQ:SB	0/2:33:22:6,2,13,12
chr1	203709034	.	A	G	353.12	PASS	AC=2;AF=0.722;AN=2;DP=1826;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:940,95,0:0,0,16,16
chr1	203709068	.	T	C	450.79	PASS	AC=2;AF=0.722;AN=2;DP=1828;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:960,84,0:0,0,13,15
chr1	203709569	.	CTTT	CT,CTT,CTTTT,C	863.68	PASS	AC=2,0,0,0;AF=0.349,0.244,0.035,0.012;AN=2;DP=3762;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	1/1:67:29:7,3,38,19
chr1	203710919	.	C	CT	3699.58	PASS	AC=2;AF=0.579;AN=2;DP=4876;MQ=60;set=variant3-variant4-variant7-variant8-variant12-variant13-variant17-variant18-variant22-variant24-variant25-variant28-variant31-variant32-variant33-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,255:255:99:7914,766,0:0,0,139,116
chr1	203712996	.	T	C	5739.76	PASS	AC=1;AF=0.553;AN=2;DP=6654;MQ=60;set=variant3-variant4-variant7-variant8-variant12-variant13-variant17-variant18-variant22-variant24-variant25-variant28-variant31-variant32-variant33-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:123,163:286:99:4125,0,3134:58,65,69,94
chr1	203713029	.	C	T	3039.67	PASS	AC=1;AF=0.5;AN=2;DP=237;FS=4.47;FractionInformativeReads=0.979;MQ=60;MQRankSum=0.389;QD=12.83;ReadPosRankSum=-1.342;SOR=0.479;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:124,108:232:99:3068,0,3396:51,73,51,57
chr1	203713133	.	G	A	4713.64	PASS	AC=1;AF=0.553;AN=2;DP=5695;MQ=60;set=variant3-variant4-variant7-variant8-variant12-variant13-variant17-variant18-variant22-variant24-variant25-variant28-variant31-variant32-variant33-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:157,116:273:99:2732,0,4064:79,78,58,58
chr1	203734231	.	T	G	589.73	PASS	AC=1;AF=0.611;AN=2;DP=1006;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant12-variant13-variant17-variant24-variant25-variant28-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:828,0,876:20,13,19,13
chr1	203740615	.	T	C	3000.35	PASS	AC=1;AF=0.743;AN=2;DP=3627;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,55:92:99:1324,0,823:17,20,21,34
chr1	203741110	.	C	T	862.4	PASS	AC=1;AF=0.542;AN=2;DP=710;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant10-variant15-variant18-variant23-variant26-variant29-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:498,0,559:14,9,14,6
chr1	203741368	.	C	A	878.6	PASS	AC=1;AF=0.743;AN=2;DP=1064;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:353,0,513:5,14,2,10
chr1	203743003	.	C	A	1217.16	PASS	AC=1;AF=0.5;AN=2;DP=124;FS=2.393;FractionInformativeReads=1;MQ=60;MQRankSum=0.053;QD=9.82;ReadPosRankSum=-1.509;SOR=0.489;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,56:124:99:1245,0,1839:45,23,34,22
chr1	203744171	.	C	T	201.41	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.212;QD=12.59;ReadPosRankSum=-2.752;SOR=0.653;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:230,0,111:3,4,4,5
chr1	203744258	.	T	C	205.68	PASS	AC=1;AF=0.766;AN=2;DP=307;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,203:3,5,0,3
chr1	203744707	.	G	C	8045.78	PASS	AC=2;AF=0.989;AN=2;DP=9634;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,226:226:99:7309,677,0:0,0,144,82
chr1	203765076	.	TC	T	77.28	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=8.195;FractionInformativeReads=0.857;MQ=60;MQRankSum=-0.529;QD=5.52;ReadPosRankSum=0.689;SOR=0.027;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:115,0,180:0,7,2,3
chr1	203766395	.	T	C	3564.59	PASS	AC=2;AF=0.808;AN=2;DP=4005;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3875,327,0:0,0,26,83
chr1	203766827	.	T	C	2864.06	PASS	AC=2;AF=0.712;AN=2;DP=3777;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3449,320,0:0,0,46,61
chr1	203770945	.	ATT	AT,A,ATTT	940.64	PASS	AC=2,0,0;AF=0.58,0.307,0.011;AN=2;DP=2312;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:51:99:0,1,26,24
chr1	203771794	.	G	T	1080.4	PASS	AC=2;AF=1;AN=2;DP=1671;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:946,90,0:0,0,9,21
chr1	203771842	.	C	CT	331.78	PASS	AC=2;AF=0.691;AN=2;DP=712;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-filterInvariant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:342,36,0:0,0,1,11
chr1	203787700	.	T	C	1303.51	PASS	AC=2;AF=1;AN=2;DP=1567;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:585,60,0:0,0,12,8
chr1	203803016	.	A	G	3020.8	PASS	AC=2;AF=1;AN=2;DP=3611;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2532,239,0:0,0,31,49
chr1	203821200	.	G	A	2008.86	PASS	AC=2;AF=1;AN=2;DP=3191;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2734,236,0:0,0,55,24
chr1	203839273	.	C	T	780.9	PASS	AC=2;AF=0.854;AN=2;DP=828;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:718,66,0:0,0,15,7
chr1	203839505	.	T	C	9146.91	PASS	AC=2;AF=1;AN=2;DP=10805;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,254:254:99:7702,762,0:0,0,140,114
chr1	204006538	.	T	C	482.13	PASS	AC=2;AF=0.898;AN=2;DP=2165;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1975,168,0:0,0,41,15
chr1	204006597	.	G	A	917.88	PASS	AC=2;AF=0.864;AN=2;DP=4198;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2840,278,0:0,0,57,36
chr1	204010322	.	C	G	1507.17	PASS	AC=1;AF=0.5;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,54:97:99:1324,0,965:21,22,24,30
chr1	204010389	.	G	T	697.94	PASS	AC=2;AF=0.898;AN=2;DP=2069;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1716,158,0:0,0,15,38
chr1	204081628	.	T	TGC	398.99	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.152;QD=12.09;ReadPosRankSum=0.43;SOR=0.954;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:436,0,1132:18,3,11,1
chr1	204081629	.	GCA	G,GCACA	73.55	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=65;set=variant29-variant41	GT:DP:GQ:SB	0/2:36:99:17,3,14,2
chr1	204081655	.	A	ACACACT,ACACACACACT,ACACT,ACACACACT,ACACACACACACT,ACACACACACACACACACT,ACACACACACACACACT	1397.54	PASS	AC=0,0,1,0,0,0,0;AF=0.19,0.431,0.103,0.121,0.103,0.017,0.017;AN=2;DP=1136;set=variant-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant12-variant26-variant28-variant30-variant31-variant32-variant35-variant24-variant36-variant37-variant38-variant39-variant41-variant40-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:49:99:22,9,15,3
chr1	204081892	.	C	T	1771.28	PASS	AC=1;AF=0.545;AN=2;DP=3676;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant27-variant32-variant34-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,101:185:99:2496,0,2034:40,44,51,50
chr1	204085609	.	A	G	1734.67	PASS	AC=1;AF=0.553;AN=2;DP=3118;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant10-variant11-variant13-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant32-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,81:159:99:1995,0,1933:37,41,39,42
chr1	204086147	.	T	C	440.86	PASS	AC=1;AF=0.5;AN=2;DP=135;MQ=60;set=variant8-variant15-variant17-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,23:31:99:701,0,273:8,0,17,6
chr1	204091014	.	T	C	2195.64	PASS	AC=1;AF=0.5;AN=2;DP=1739;MQ=60;set=variant2-variant6-variant19-variant21-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:132,127:259:99:3197,0,3332:68,64,60,67
chr1	204091459	.	T	C	1525.25	PASS	AC=1;AF=0.5;AN=2;DP=156;MQ=60;set=variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,23:66:99:628,0,1262:12,31,4,19
chr1	204091640	.	T	C	343.12	PASS	AC=1;AF=0.5;AN=2;DP=50;FractionInformativeReads=1;MQ=60;set=variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:245,0,229:4,6,4,6
chr1	204092785	.	C	G	552.18	PASS	AC=1;AF=0.5;AN=2;DP=122;FractionInformativeReads=1;MQ=60;set=variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:864,0,761:21,9,21,9
chr1	204093025	.	T	A	694.19	PASS	AC=1;AF=0.5;AN=2;DP=130;MQ=60;set=variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,28:69:99:768,0,1156:11,30,11,17
chr1	204095280	.	T	C	3207.96	PASS	AC=1;AF=0.5;AN=2;DP=829;MQ=60;set=variant8-variant15-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:84,85:169:99:2310,0,2082:37,47,30,55
chr1	204095478	.	C	T	903.36	PASS	AC=1;AF=0.5;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,29:61:99:702,0,943:17,15,14,15
chr1	204096473	.	A	C	67.12	PASS	AC=1;AF=0.5;AN=2;DP=109;MQ=60;set=variant2-filterInvariant3-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,9:29:99:174,0,890:3,17,9,0
chr1	204096630	.	T	C	916.54	PASS	AC=1;AF=0.92;AN=2;DP=2028;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,12:35:99:310,0,603:10,13,5,7
chr1	204101381	.	G	A	1141.46	PASS	AC=1;AF=0.5;AN=2;DP=240;FractionInformativeReads=1;MQ=60;set=variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,56:106:99:1337,0,1249:28,22,27,29
chr1	204101460	.	AG	A	1457.02	PASS	AC=1;AF=0.5;AN=2;DP=189;MQ=60;set=variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,42:82:99:1374,0,1310:13,27,15,27
chr1	204108961	.	A	G	65.43	PASS	AC=2;AF=0.531;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant8-variant11-variant13-variant15-variant18-variant24-variant28-variant29-variant31-variant33-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:348,24,0:0,0,8,0
chr1	204110334	.	A	G	3004.95	PASS	AC=2;AF=0.966;AN=2;DP=7143;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5279,500,0:0,0,97,70
chr1	204110501	.	A	C	2380.01	PASS	AC=1;AF=0.5;AN=2;DP=169;FS=2.765;FractionInformativeReads=1;MQ=60;MQRankSum=-1.049;QD=14.08;ReadPosRankSum=1.457;SOR=0.952;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:75,94:169:99:2408,0,1705:33,42,36,58
chr1	204115695	.	G	T	462.68	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=1.532;FractionInformativeReads=1;MQ=60;MQRankSum=0.293;QD=13.61;ReadPosRankSum=0.776;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:491,0,446:11,5,14,4
chr1	204116628	.	G	C	2144.69	PASS	AC=1;AF=0.5;AN=2;DP=203;FS=1.713;FractionInformativeReads=1;MQ=60;MQRankSum=-1.084;QD=10.56;ReadPosRankSum=-2.258;SOR=0.842;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:104,99:203:99:2173,0,2695:52,52,46,53
chr1	204121234	.	C	G	74.41	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.198;QD=10.63;ReadPosRankSum=0.922;SOR=0.18;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:61:103,0,61:0,2,2,3
chr1	204124865	.	C	T	1527.96	PASS	AC=1;AF=0.62;AN=2;DP=2623;MQ=60;set=variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,61:117:99:1331,0,1270:32,24,31,30
chr1	204125272	.	C	A	1448.67	PASS	AC=1;AF=0.548;AN=2;DP=2363;MQ=60;set=variant7-variant9-variant13-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,62:122:99:1514,0,1564:38,22,39,23
chr1	204125987	.	T	C	634.65	PASS	AC=1;AF=0.542;AN=2;DP=384;FractionInformativeReads=1;MQ=60;set=variant7-variant13-variant19-variant21-variant23-variant28-variant29-variant30-variant34-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:459,0,418:6,11,4,12
chr1	204159541	.	CG	C	102.49	PASS	AC=1;AF=0.5;AN=2;DP=98;MQ=60;set=variant8-variant10-variant12-variant15-variant26-variant32-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:134,0,569:4,4,1,4
chr1	204159545	.	CCCCG	C	88.17	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=5.119;FractionInformativeReads=1;MQ=60;MQRankSum=0.906;QD=5.51;ReadPosRankSum=0.793;SOR=1.944;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:125,0,644:6,5,1,4
chr1	204159787	.	G	C	1669.63	PASS	AC=1;AF=0.559;AN=2;DP=2282;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant13-variant14-variant18-variant21-variant25-variant27-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,54:107:99:1336,0,1321:25,28,25,29
chr1	204165609	.	CA	C	196.28	PASS	AC=2;AF=0.571;AN=2;DP=580;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant21-variant26-variant27-variant32-variant34-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1199,96,0:0,0,13,19
chr1	204167263	.	G	A	664.45	PASS	AC=1;AF=0.556;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant14-variant15-variant26-variant32-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:335,0,338:10,4,9,5
chr1	204167672	.	T	C	3161.53	PASS	AC=1;AF=0.563;AN=2;DP=945;MQ=60;set=variant8-variant12-variant14-variant15-variant26-variant32-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,39:97:99:936,0,1407:24,34,12,27
chr1	204170687	.	C	G	1912.77	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=1.404;FractionInformativeReads=1;MQ=60;MQRankSum=-1.106;QD=14.38;ReadPosRankSum=-3.352;SOR=0.565;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,79:133:99:1941,0,1331:32,22,44,35
chr1	204170993	.	A	G	509.54	PASS	AC=2;AF=0.625;AN=2;DP=92;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant34-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:884,72,0:0,0,8,16
chr1	204172060	.	G	C	708.24	PASS	AC=2;AF=0.667;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3655,381,0:0,0,66,61
chr1	204172096	.	G	A	700.01	PASS	AC=2;AF=0.667;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3394,338,0:0,0,55,58
chr1	204190412	.	C	G	286.77	PASS	AC=2;AF=0.661;AN=2;DP=1248;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:980,75,0:0,0,16,9
chr1	204190416	.	G	A	575.12	PASS	AC=1;AF=0.5;AN=2;DP=432;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant9-variant13-variant21-variant32-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:447,0,198:5,3,10,6
chr1	204190428	.	T	A	157.54	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=3.524;FractionInformativeReads=1;MQ=60;MQRankSum=0.024;QD=5.63;ReadPosRankSum=-2.086;SOR=0.255;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:186,0,543:12,6,5,5
chr1	204190508	.	C	T	383.57	PASS	AC=1;AF=0.596;AN=2;DP=1381;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant8-variant10-variant11-variant14-variant17-variant19-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:542,0,624:17,5,11,6
chr1	204190576	.	C	T	332.45	PASS	AC=1;AF=0.596;AN=2;DP=1617;MQ=60;set=variant-variant3-variant7-variant8-variant10-variant11-variant14-variant17-variant19-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:662,0,762:15,13,15,11
chr1	204190873	.	A	G	590.18	PASS	AC=2;AF=0.661;AN=2;DP=3245;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4235,399,0:0,0,70,63
chr1	204191409	.	T	C	566.88	PASS	AC=2;AF=0.661;AN=2;DP=2321;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2743,258,0:0,0,48,38
chr1	204197007	.	T	A	521.77	PASS	AC=2;AF=0.7;AN=2;DP=287;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant14-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:427,36,0:0,0,10,2
chr1	204197048	.	C	T	156.3	PASS	AC=2;AF=0.672;AN=2;DP=582;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:649,60,0:0,0,14,6
chr1	204198209	.	A	G	551.74	PASS	AC=2;AF=0.667;AN=2;DP=1469;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1716,144,0:0,0,10,38
chr1	204199614	.	C	T	1086.83	PASS	AC=2;AF=0.667;AN=2;DP=3305;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3451,338,0:0,0,67,46
chr1	204214975	.	TACACACAC	TAC,TACACAC,T,TACAC	1010.66	PASS	AC=2,0,0,0;AF=0.684,0.013,0.013,0.013;AN=2;DP=1952;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:43:99:0,0,7,36
chr1	204216410	.	C	T	5956.25	PASS	AC=2;AF=0.736;AN=2;DP=6588;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4583,447,0:0,0,87,62
chr1	204216468	.	C	T	5271.6	PASS	AC=1;AF=0.722;AN=2;DP=6580;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,80:179:99:1758,0,2536:46,53,39,41
chr1	204216601	.	G	A	1528.13	PASS	AC=1;AF=0.722;AN=2;DP=2558;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:889,0,920:10,23,10,23
chr1	204216762	.	C	T	403.45	PASS	AC=1;AF=0.722;AN=2;DP=860;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:194,0,137:0,4,3,6
chr1	204218633	.	G	C	800.96	PASS	AC=2;AF=0.73;AN=2;DP=1237;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:924,81,0:0,0,9,18
chr1	204218714	.	T	C	286.77	PASS	AC=2;AF=1;AN=2;DP=564;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:261,24,0:0,0,2,6
chr1	204219850	.	G	A	1527.06	PASS	AC=2;AF=0.73;AN=2;DP=2436;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1881,164,0:0,0,16,39
chr1	204226075	.	C	T	1065.35	PASS	AC=1;AF=0.5;AN=2;DP=134;FS=3.301;FractionInformativeReads=1;MQ=60;MQRankSum=-0.302;QD=7.95;ReadPosRankSum=-0.138;SOR=0.771;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:88,46:134:99:1094,0,2302:41,47,25,21
chr1	204226114	.	C	T	1158.39	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=3.336;FractionInformativeReads=1;MQ=60;MQRankSum=-0.747;QD=9.5;ReadPosRankSum=1.071;SOR=0.53;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,49:122:99:1187,0,1842:32,41,25,24
chr1	204228944	.	A	G	526.57	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.325;QD=13.16;ReadPosRankSum=-1.435;SOR=0.719;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:555,0,571:9,12,8,11
chr1	204229001	.	T	G	446.61	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.237;QD=16.54;ReadPosRankSum=-2.354;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:475,0,813:5,9,4,9
chr1	204229006	.	T	C	413.25	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.082;QD=16.53;ReadPosRankSum=-1.779;SOR=1.038;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:441,0,816:5,9,3,8
chr1	204229098	.	T	G	151.96	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.378;QD=12.66;ReadPosRankSum=0.467;SOR=1.445;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:180,0,136:2,4,1,5
chr1	204229111	.	C	G	142.29	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=2.522;FractionInformativeReads=1;MQ=60;MQRankSum=-0.101;QD=10.95;ReadPosRankSum=1.791;SOR=1.911;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:171,0,119:3,4,1,5
chr1	204230565	.	G	A	1164.32	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=4.608;FractionInformativeReads=1;MQ=60;MQRankSum=1.395;QD=14.93;ReadPosRankSum=-2.084;SOR=1.313;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,40:78:99:1193,0,1125:16,22,12,28
chr1	204230581	.	G	A	1323.58	PASS	AC=1;AF=0.688;AN=2;DP=2343;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:943,0,840:14,17,9,22
chr1	204234222	.	T	C	2812.67	PASS	AC=2;AF=0.743;AN=2;DP=2469;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2961,228,0:0,0,35,41
chr1	204234225	.	G	A	943.96	PASS	AC=1;AF=0.661;AN=2;DP=1975;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,41:72:99:1198,0,818:13,18,20,21
chr1	204237113	.	TC	T	1023.55	PASS	AC=1;AF=0.722;AN=2;DP=1024;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:684,0,893:16,10,15,6
chr1	204237265	.	G	A	1744.34	PASS	AC=1;AF=0.5;AN=2;DP=139;FS=1.346;FractionInformativeReads=1;MQ=60;MQRankSum=0.348;QD=12.55;ReadPosRankSum=0.845;SOR=0.571;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,68:139:99:1773,0,1908:42,29,38,30
chr1	204237416	.	C	T	2816.02	PASS	AC=1;AF=0.716;AN=2;DP=5506;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,92:166:99:2414,0,1731:30,44,36,56
chr1	204243732	.	C	G	301.96	PASS	AC=2;AF=0.75;AN=2;DP=414;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:325,30,0:0,0,7,3
chr1	204373836	.	A	G	4511.96	PASS	AC=2;AF=0.75;AN=2;DP=792;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,403:404:99:12306,1200,0:0,1,221,182
chr1	204379617	.	T	C	4944.53	PASS	AC=2;AF=0.989;AN=2;DP=7006;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4811,444,0:0,0,71,77
chr1	204380483	.	C	G	878.43	PASS	AC=1;AF=0.5;AN=2;DP=140;FractionInformativeReads=1;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,33:72:99:1056,0,1157:20,19,15,18
chr1	204392575	.	CA	C,CAA,CAAA	57.53	PASS	AC=0,1,0;AF=0.25,0.167,0.083;AN=2;DP=148;set=variant3-variant7-variant8-variant11-variant24-variant27-variant28-variant29-variant31-variant35-filterInvariant36-variant41	GT:DP:GQ:SB	0/2:6:16:2,0,4,0
chr1	204394888	.	CA	C	539.28	PASS	AC=1;AF=0.542;AN=2;DP=521;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:535,0,524:3,18,7,15
chr1	204396728	.	A	C	862.17	PASS	AC=1;AF=0.542;AN=2;DP=772;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,38:80:99:952,0,1021:25,17,26,12
chr1	204396745	.	GA	G	948.31	PASS	AC=1;AF=0.542;AN=2;DP=966;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,46:104:99:1093,0,1455:34,24,28,18
chr1	204396830	.	G	A	1472.22	PASS	AC=1;AF=0.542;AN=2;DP=1547;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,60:140:99:1335,0,1819:42,38,32,28
chr1	204398073	.	C	T	160.81	PASS	AC=1;AF=0.55;AN=2;DP=114;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant13-variant17-variant21-variant22-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:192,0,423:2,4,2,3
chr1	204398077	.	C	T	160.81	PASS	AC=1;AF=0.55;AN=2;DP=98;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant13-variant17-variant21-variant22-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:192,0,423:2,4,2,3
chr1	204398834	.	CCTTT	C	187.58	PASS	AC=1;AF=0.55;AN=2;DP=105;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant13-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,12:16:99:492,0,214:4,0,9,3
chr1	204398938	.	G	A	385.71	PASS	AC=1;AF=0.542;AN=2;DP=435;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:825,0,669:19,4,17,11
chr1	204399061	.	A	G	2230.38	PASS	AC=1;AF=0.542;AN=2;DP=1603;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:78,63:141:99:2416,0,3745:42,36,34,29
chr1	204399064	.	G	A	2221.37	PASS	AC=1;AF=0.542;AN=2;DP=1636;MQ=60;set=variant5-variant11-variant13-variant15-variant17-variant21-variant22-variant29-variant30-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,63:143:99:2395,0,3748:43,37,34,29
chr1	204403659	.	A	G	1704.87	PASS	AC=1;AF=0.563;AN=2;DP=2390;set=variant5-variant8-variant9-variant11-variant13-variant15-variant17-variant22-variant24-variant27-variant29-variant30-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,84:146:99:2177,0,1435:26,36,43,41
chr1	204409281	.	C	G	794.88	PASS	AC=2;AF=0.977;AN=2;DP=2015;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1150,99,0:0,0,24,9
chr1	204413297	.	C	T	5482.42	PASS	AC=2;AF=0.869;AN=2;DP=6429;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:6895,469,0:0,0,81,74
chr1	204413299	.	G	A	5482.42	PASS	AC=2;AF=0.869;AN=2;DP=6357;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:6895,469,0:0,0,79,74
chr1	204418198	.	T	C	1232.67	PASS	AC=2;AF=0.884;AN=2;DP=1726;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1454,123,0:0,0,24,17
chr1	204418889	.	C	T	559.86	PASS	AC=2;AF=0.869;AN=2;DP=913;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:955,72,0:0,0,20,4
chr1	204418939	.	C	T	1190.47	PASS	AC=2;AF=0.869;AN=2;DP=2037;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2022,186,0:0,0,41,21
chr1	204426050	.	A	C	66.59	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=3.68;FractionInformativeReads=0.412;MQ=60;MQRankSum=-0.937;QD=3.92;ReadPosRankSum=-0.55;SOR=2.494;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:95:95,0,103:2,1,4,0
chr1	204426052	.	A	C	328.94	PASS	AC=2;AF=0.85;AN=2;DP=377;set=variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:304,21,0:0,0,5,2
chr1	204429212	.	A	T	2305.51	PASS	AC=2;AF=0.989;AN=2;DP=2409;MQ=60;MQRankSum=1.266;ReadPosRankSum=-0.789;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3085,208,0:0,0,26,43
chr1	204429213	.	T	G	2305.51	PASS	AC=2;AF=0.989;AN=2;DP=2309;FS=0;MQ=60;MQRankSum=0.031;ReadPosRankSum=-0.123;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:3085,208,0:0,0,25,43
chr1	204429215	.	T	A	2221.77	PASS	AC=2;AF=0.989;AN=2;DP=2256;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.831;ReadPosRankSum=0.277;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:3060,205,0:0,0,25,42
chr1	204429216	.	A	G	2176.77	PASS	AC=2;AF=0.989;AN=2;DP=2224;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.054;ReadPosRankSum=-0.081;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:3015,202,0:0,0,25,42
chr1	204429285	.	A	G	773.1	PASS	AC=2;AF=0.989;AN=2;DP=861;FractionInformativeReads=1;MQ=60;MQRankSum=0.318;ReadPosRankSum=-1.059;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1082,90,0:0,0,11,19
chr1	204429838	.	C	G	3127.64	PASS	AC=2;AF=0.977;AN=2;DP=7026;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:5505,527,0:0,0,76,100
chr1	204433093	.	A	C	1309.59	PASS	AC=2;AF=0.881;AN=2;DP=2002;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2068,186,0:0,0,45,17
chr1	204433511	.	T	TC	1136.72	PASS	AC=2;AF=0.989;AN=2;DP=1807;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1896,156,0:0,0,32,20
chr1	204434277	.	T	C	1451.6	PASS	AC=2;AF=0.989;AN=2;DP=1349;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:837,72,0:0,0,15,9
chr1	204435612	.	G	GGGGGT	97.58	PASS	AC=1;AF=0.75;AN=2;DP=11;FS=0;MQ=60;MQRankSum=0.198;ReadPosRankSum=0.922;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,286:5,0,2,0
chr1	204436520	.	G	C	61.77	PASS	AC=1;AF=0.97;AN=2;DP=144;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,80:1,2,1,1
chr1	204438334	.	C	T	4814.17	PASS	AC=1;AF=0.953;AN=2;DP=7265;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,86:198:99:2025,0,3057:52,60,42,44
chr1	204438643	.	G	T	1387.37	PASS	AC=1;AF=0.953;AN=2;DP=3844;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,46:86:99:1172,0,1042:20,20,21,25
chr1	204459052	.	G	A	448.37	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=1.242;FractionInformativeReads=1;MQ=60;MQRankSum=0.201;QD=10.68;ReadPosRankSum=0.755;SOR=0.393;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:477,0,583:14,7,12,9
chr1	204495586	.	A	AT	284.26	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=0.864;MQ=60;MQRankSum=1.818;QD=6.46;ReadPosRankSum=0.547;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:322,0,814:7,15,5,11
chr1	204495595	.	GTT	GTTT,GTTTT,G	514.13	PASS	AC=1,0,0;AF=0.605,0.013,0.053;AN=2;DP=1789;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:31:99:2,10,6,13
chr1	204501383	.	C	T	3052.65	PASS	AC=1;AF=0.611;AN=2;DP=677;MQ=60;set=variant15-variant17-variant22-variant27-variant29-variant30-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,31:76:99:699,0,1108:25,20,18,13
chr1	204506107	.	C	T	1194.34	PASS	AC=1;AF=0.73;AN=2;DP=2295;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,21:52:99:496,0,750:17,14,12,9
chr1	204506174	.	CT	C	2124.32	PASS	AC=1;AF=0.611;AN=2;DP=421;MQ=60;set=variant15-variant17-variant22-variant27-variant29-variant30-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:563,0,669:12,12,8,13
chr1	204512100	.	T	C	625.1	PASS	AC=1;AF=0.73;AN=2;DP=1135;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:375,0,475:4,12,1,11
chr1	204515863	.	C	T	444.37	PASS	AC=1;AF=0.736;AN=2;DP=566;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:389,0,408:11,0,10,2
chr1	204516025	.	A	G	2592.95	PASS	AC=1;AF=0.73;AN=2;DP=4394;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,52:110:99:1251,0,1596:30,28,22,30
chr1	204518842	.	C	A	5770.27	PASS	AC=2;AF=0.833;AN=2;DP=7923;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5608,520,0:0,0,107,67
chr1	204519692	.	GT	G	279.59	PASS	AC=2;AF=0.764;AN=2;DP=574;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:231,27,0:0,0,4,5
chr1	204520209	.	C	T	2994.87	PASS	AC=1;AF=0.716;AN=2;DP=2415;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:760,0,996:4,25,7,20
chr1	204522000	.	C	CTT,CT	233.54	PASS	AC=1,0;AF=0.632,0.211;AN=2;DP=193;FS=0;set=variant2-variant3-variant5-variant7-variant10-variant12-variant15-variant17-variant19-variant22-variant25-variant26-variant28-variant29-variant31-variant33-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:9:99:2,3,1,3
chr1	204522018	.	C	T	262.97	PASS	AC=1;AF=0.825;AN=2;DP=127;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant6-variant7-variant10-variant12-variant15-variant17-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,351:2,4,1,3
chr1	204522457	.	T	C	1764.91	PASS	AC=1;AF=0.73;AN=2;DP=3054;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:809,0,1076:21,15,13,16
chr1	204522489	.	C	T	1733.74	PASS	AC=1;AF=0.716;AN=2;DP=2683;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,32:70:99:926,0,1220:24,14,20,12
chr1	204524474	.	G	T	496.69	PASS	AC=1;AF=0.716;AN=2;DP=882;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,15:19:83:477,0,83:3,1,13,2
chr1	204525054	.	GT	G	8077.97	PASS	AC=1;AF=0.73;AN=2;DP=11469;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:142,140:282:99:3087,0,3137:75,67,77,63
chr1	204526717	.	A	G	734.08	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=1.619;FractionInformativeReads=1;MQ=60;MQRankSum=0.376;QD=26.22;ReadPosRankSum=1.082;SOR=0.317;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,17:28:99:762,0,960:8,3,10,7
chr1	204526718	.	C	T	734.08	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=3.799;FractionInformativeReads=1;MQ=60;MQRankSum=-1.75;QD=26.22;ReadPosRankSum=0.072;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:762,0,960:8,2,11,7
chr1	204526719	.	A	G	734.08	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=5.822;FractionInformativeReads=1;MQ=60;MQRankSum=1.342;QD=23.68;ReadPosRankSum=-0.186;SOR=0.172;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,20:31:99:762,0,960:9,2,12,8
chr1	204527057	.	TAAC	T	3174.27	PASS	AC=1;AF=0.662;AN=2;DP=2819;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,33:67:99:716,0,1311:17,17,14,19
chr1	204527060	.	C	T	1564.34	PASS	AC=1;AF=0.611;AN=2;DP=642;MQ=60;set=variant15-variant17-variant22-variant27-variant29-variant30-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,25:65:99:521,0,1586:18,22,12,13
chr1	204588140	.	G	A	2259.02	PASS	AC=1;AF=0.536;AN=2;DP=2332;set=variant6-variant8-variant15-variant18-variant22-variant26-variant27-variant29-variant30-variant31-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,87:167:99:2283,0,2351:36,44,43,44
chr1	204591237	.	A	G	620.32	PASS	AC=2;AF=0.779;AN=2;DP=2437;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1480,141,0:0,0,22,25
chr1	204655010	.	A	G	165.25	PASS	AC=1;AF=0.556;AN=2;DP=127;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant13-variant20-variant24-variant29-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:283,0,281:6,8,1,8
chr1	204797992	.	G	C	1724.71	PASS	AC=1;AF=0.5;AN=2;DP=781;set=variant3-variant7-variant12-variant20-variant26-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,43:93:99:1020,0,1153:17,33,15,28
chr1	204889575	.	T	C	71.38	PASS	AC=1;AF=0.563;AN=2;DP=93;FractionInformativeReads=1;set=variant-variant7-variant12-variant23-variant26-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:65:184,0,65:4,0,6,0
chr1	204915641	.	A	G	1885.65	PASS	AC=1;AF=0.5;AN=2;DP=384;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:114,95:209:99:2460,0,2941:65,49,53,42
chr1	204943285	.	A	T	3938.45	PASS	AC=2;AF=0.989;AN=2;DP=5921;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,127:128:99:3710,370,0:1,0,68,59
chr1	204943947	.	C	A	1078.68	PASS	AC=1;AF=0.583;AN=2;DP=3100;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant22-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,77:141:99:2014,0,1625:24,40,31,46
chr1	204943991	.	C	T	947.13	PASS	AC=1;AF=0.583;AN=2;DP=2646;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant22-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,62:116:99:1674,0,1453:20,34,27,35
chr1	204943992	.	A	G	3809.19	PASS	AC=2;AF=0.989;AN=2;DP=4911;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:4497,341,0:0,0,47,66
chr1	204945338	.	CTA	C	2374.58	PASS	AC=1;AF=0.523;AN=2;DP=2873;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant11-variant12-variant14-variant15-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant33-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,61:129:99:2213,0,2654:26,42,27,34
chr1	204953459	.	A	ATG	238.79	PASS	AC=1;AF=0.8;AN=2;DP=228;FS=0;set=variant2-variant3-variant4-variant5-variant11-variant14-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant33-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:89:161,0,89:0,3,0,5
chr1	204953485	.	A	ATG	72.62	PASS	AC=1;AF=0.833;AN=2;DP=14;FS=0;MQ=60;MQRankSum=-1.231;ReadPosRankSum=1.231;set=variant21-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:60:99,0,60:0,2,0,3
chr1	204966690	.	G	A	2831.92	PASS	AC=2;AF=0.932;AN=2;DP=4475;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3200,300,0:0,0,38,63
chr1	204966749	.	A	G	597.28	PASS	AC=1;AF=0.779;AN=2;DP=2122;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:668,0,767:7,20,10,17
chr1	204978533	.	A	G	4174.58	PASS	AC=1;AF=0.786;AN=2;DP=4663;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,54:110:99:1550,0,1321:28,28,30,24
chr1	204985894	.	G	A	1343.91	PASS	AC=1;AF=0.5;AN=2;DP=175;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,38:77:99:931,0,1045:16,23,20,18
chr1	204986359	.	C	T	528.68	PASS	AC=1;AF=0.5;AN=2;DP=128;FractionInformativeReads=1;MQ=60;set=variant10-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,39:58:99:997,0,454:9,10,18,21
chr1	204986586	.	T	C	1026.16	PASS	AC=2;AF=0.943;AN=2;DP=1850;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1470,126,0:0,0,19,23
chr1	204986668	.	C	A	784.95	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.298;QD=13.77;ReadPosRankSum=0.41;SOR=0.836;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,32:57:99:813,0,630:14,11,19,13
chr1	204987119	.	G	A	632.14	PASS	AC=1;AF=0.5;AN=2;DP=107;FractionInformativeReads=1;MQ=60;set=variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,20:55:99:448,0,1034:19,16,10,10
chr1	204987629	.	T	G	404.83	PASS	AC=1;AF=0.5;AN=2;DP=110;FractionInformativeReads=1;MQ=60;set=variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,53:71:99:1289,0,390:10,8,24,29
chr1	204987953	.	C	T	960.31	PASS	AC=2;AF=0.583;AN=2;DP=476;MQ=60;set=variant10-variant20-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3083,294,0:0,0,49,50
chr1	204988603	.	C	CCATTCATT,CCATTCATTCATT,CCATTCATTCATTCATT,CCATT	727.14	PASS	AC=1,0,0,1;AF=0.625,0.273,0.011,0.034;AN=2;DP=2091;set=Intersection	GT:DP:GQ:SB	4/1:35:99:0,0,17,18
chr1	204990185	.	A	G	518.23	PASS	AC=2;AF=0.667;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:1032,95,0:0,0,21,11
chr1	204990860	.	G	C	2528.43	PASS	AC=2;AF=0.943;AN=2;DP=3598;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2934,278,0:0,0,50,43
chr1	204991035	.	G	A	786.29	PASS	AC=1;AF=0.5;AN=2;DP=93;FS=1.755;FractionInformativeReads=1;MQ=60;MQRankSum=-1.275;QD=8.45;ReadPosRankSum=-0.444;SOR=0.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,31:93:99:815,0,1689:29,33,16,15
chr1	204991260	.	T	C	134.29	PASS	AC=2;AF=0.75;AN=2;DP=61;FractionInformativeReads=1;MQ=60;MQRankSum=0.127;ReadPosRankSum=-1.648;set=variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1425,126,0:0,0,23,19
chr1	204991511	.	G	C	103.89	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1404;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:55,11:66:65:65,0,2197:8,47,11,0
chr1	204991596	.	C	G	1515.74	PASS	AC=2;AF=0.583;AN=2;DP=2059;MQ=60;set=variant3-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant20-variant23-variant25-variant26-variant27-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,74:76:99:2395,178,0:1,1,34,40
chr1	204991887	.	T	TA	683.34	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=1.064;FractionInformativeReads=0.947;MQ=60;MQRankSum=1.613;QD=11.99;ReadPosRankSum=-0.763;SOR=0.509;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,29:54:99:721,0,602:9,16,12,17
chr1	205012198	.	T	G	61.77	PASS	AC=2;AF=0.933;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant12-variant13-variant16-variant21-variant22-variant25-variant26-variant27-variant29-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:76,6,0:0,0,2,0
chr1	205022207	.	C	G	381.37	PASS	AC=1;AF=0.5;AN=2;DP=242;MQ=60;set=variant5-variant13-variant14-variant23-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:682,0,550:14,9,17,11
chr1	205028883	.	CAG	C	160.66	PASS	AC=1;AF=0.643;AN=2;DP=680;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:384,0,478:4,8,1,9
chr1	205034852	.	A	ATGGCCTGCTGCACTGGTCAGGGCCGGTGGTC	1168.67	PASS	AC=1;AF=0.657;AN=2;DP=1652;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,16:45:99:1265,0,7343:21,8,13,3
chr1	205035648	.	C	T	1421.23	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.566;QD=10.69;ReadPosRankSum=-0.606;SOR=0.705;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,63:133:99:1449,0,1685:42,28,38,25
chr1	205038731	.	C	T	2522.09	PASS	AC=1;AF=0.775;AN=2;DP=2787;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,34:60:99:879,0,679:9,17,10,24
chr1	205040943	.	C	G	728.99	PASS	AC=1;AF=0.639;AN=2;DP=1351;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,11:34:99:262,0,646:15,8,7,4
chr1	205041015	.	G	A	1535.02	PASS	AC=1;AF=0.588;AN=2;DP=2520;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,32:72:99:801,0,1011:23,17,22,10
chr1	205042855	.	G	A	1211.21	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=0.776;FractionInformativeReads=1;MQ=60;MQRankSum=-1.293;QD=12.75;ReadPosRankSum=-0.458;SOR=0.558;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,50:95:99:1239,0,1164:19,26,23,27
chr1	205043250	.	G	C	1286.91	PASS	AC=1;AF=0.588;AN=2;DP=1974;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:971,0,822:15,14,17,15
chr1	205044354	.	G	A	1548.25	PASS	AC=1;AF=0.886;AN=2;DP=2819;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:32,29:61:99:680,0,873:16,16,17,12
chr1	205044416	.	C	A	1344.87	PASS	AC=2;AF=0.909;AN=2;DP=3003;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2079,192,0:0,0,33,31
chr1	205044866	.	G	C	863.29	PASS	AC=1;AF=0.886;AN=2;DP=1146;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:272,0,650:7,13,5,5
chr1	205046727	.	C	A	1039.54	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=0.802;FractionInformativeReads=1;MQ=60;MQRankSum=0.786;QD=11.95;ReadPosRankSum=1.746;SOR=0.829;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,45:87:99:1068,0,1087:21,21,24,21
chr1	205047142	.	G	A	390.8	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.237;QD=14.47;ReadPosRankSum=2.159;SOR=0.569;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:419,0,371:6,7,7,7
chr1	205052939	.	G	A	2932.65	PASS	AC=1;AF=0.875;AN=2;DP=4143;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:59,47:106:99:1206,0,1508:26,33,20,27
chr1	205053219	.	C	T	2401.77	PASS	AC=1;AF=0.886;AN=2;DP=5392;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,80:136:99:2073,0,1317:30,26,44,36
chr1	205053722	.	CTT	CT,CTTTTT,C,CTTTTTT,CTTTT,CTTT	267.21	PASS	AC=0,0,1,0,0,0;AF=0.154,0.058,0.077,0.019,0.173,0.058;AN=2;DP=2105;set=variant-variant3-filterInvariant4-filterInvariant8-variant12-filterInvariant13-filterInvariant14-filterInvariant15-variant17-variant18-variant19-variant21-filterInvariant22-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant33-variant36-filterInvariant38-variant39-variant41-variant43-filterInvariant44	GT:DP:GQ:SB	0/3:40:99:10,15,0,15
chr1	205053759	.	A	ACT	1168.21	PASS	AC=1;AF=0.898;AN=2;DP=965;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:99:248,0,609:0,15,0,7
chr1	205055949	.	G	A	2296.37	PASS	AC=1;AF=0.886;AN=2;DP=2960;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:956,0,1033:18,18,22,14
chr1	205056326	.	ATT	A,AT,ATTT	253.97	PASS	AC=0,1,0;AF=0.032,0.452,0.161;AN=2;DP=662;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:12:84:1,4,1,6
chr1	205056844	.	T	TTA	2262.45	PASS	AC=1;AF=0.886;AN=2;DP=2903;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:39,33:72:99:782,0,1395:19,20,17,16
chr1	205063949	.	C	T	168.24	PASS	AC=1;AF=0.609;AN=2;DP=788;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:535,0,275:8,2,14,1
chr1	205065733	.	G	T	2310.56	PASS	AC=1;AF=0.588;AN=2;DP=2334;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,21:53:99:539,0,1018:23,9,16,5
chr1	205067972	.	CAA	CA,C,CAAAA	67.31	PASS	AC=2,0,0;AF=0.467,0.2,0.067;AN=2;DP=127;FS=0;set=variant4-variant6-variant7-variant12-variant15-variant16-variant17-variant22-variant23-variant26-variant35-variant37-variant39-variant40-variant41	GT:DP:GQ:SB	1/1:10:9:1,0,8,1
chr1	205074424	.	C	T	406.1	PASS	AC=1;AF=0.597;AN=2;DP=371;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,148:0,4,0,3
chr1	205083865	.	T	C	386.88	PASS	AC=1;AF=0.594;AN=2;DP=524;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:108,0,195:4,3,3,2
chr1	205084120	.	G	A	890.03	PASS	AC=1;AF=0.614;AN=2;DP=967;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:331,0,163:2,4,5,9
chr1	205090885	.	C	G	634.79	PASS	AC=1;AF=0.588;AN=2;DP=3288;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,50:102:99:1235,0,1303:29,23,32,18
chr1	205111761	.	A	C	1990.57	PASS	AC=1;AF=0.588;AN=2;DP=2105;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,26:40:99:803,0,419:3,11,9,17
chr1	205114653	.	G	GT,GTT	602.7	PASS	AC=1,0;AF=0.533,0.033;AN=2;DP=3303;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-filterInvariant27-filterInvariant30-variant31-variant34-variant37-variant38-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:58:99:0,12,17,29
chr1	205114665	.	G	T	1828.61	PASS	AC=1;AF=0.515;AN=2;DP=3120;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant37-filterInvariant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:396,0,743:9,27,11,15
chr1	205115099	.	G	A	902.9	PASS	AC=1;AF=0.588;AN=2;DP=1717;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,25:64:99:697,0,912:20,19,13,12
chr1	205130413	.	A	G	2290.47	PASS	AC=2;AF=0.955;AN=2;DP=3669;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2359,231,0:0,0,43,34
chr1	205131059	.	G	GAC	1018.58	PASS	AC=2;AF=0.886;AN=2;DP=1545;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1443,114,0:0,0,22,14
chr1	205157100	.	T	C	111.61	PASS	AC=1;AF=0.757;AN=2;DP=296;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,192:0,3,0,2
chr1	205157108	.	A	G	361.63	PASS	AC=1;AF=0.905;AN=2;DP=313;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,192:0,3,0,2
chr1	205211142	.	G	A	714.19	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=3.824;FractionInformativeReads=1;MQ=60;MQRankSum=-0.812;QD=12.1;ReadPosRankSum=1.04;SOR=0.291;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:742,0,754:8,20,13,18
chr1	205225457	.	G	A	3543.38	PASS	AC=1;AF=0.589;AN=2;DP=3638;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,64:140:99:1702,0,2164:44,32,33,31
chr1	205240141	.	G	T	1785.66	PASS	AC=1;AF=0.66;AN=2;DP=1233;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant16-variant17-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,37:53:99:924,0,405:8,8,21,16
chr1	205240913	.	A	G	765.82	PASS	AC=2;AF=0.955;AN=2;DP=1735;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1514,149,0:0,0,32,18
chr1	205241659	.	T	C	1478.75	PASS	AC=2;AF=0.955;AN=2;DP=2692;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2304,227,0:0,0,40,36
chr1	205272926	.	C	T	1347.81	PASS	AC=1;AF=0.567;AN=2;DP=1664;MQ=60;set=variant2-variant4-variant12-variant19-variant21-variant23-variant24-variant28-variant32-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,68:135:99:1913,0,1837:39,28,36,32
chr1	205272983	.	C	G	1495.38	PASS	AC=1;AF=0.571;AN=2;DP=1759;MQ=60;set=variant2-variant4-variant12-variant19-variant21-variant23-variant24-variant28-variant32-variant34-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:88,86:174:99:2106,0,2388:48,40,45,41
chr1	205273142	.	G	C	1854.48	PASS	AC=1;AF=0.545;AN=2;DP=1496;MQ=60;set=variant3-variant5-variant7-variant11-variant14-variant15-variant20-variant24-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,86:145:99:2393,0,1456:28,31,43,43
chr1	205274174	.	A	G	577.28	PASS	AC=2;AF=0.762;AN=2;DP=1314;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1484,111,0:0,0,34,3
chr1	205275061	.	C	T	368.2	PASS	AC=1;AF=0.679;AN=2;DP=325;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:201,0,360:9,2,6,0
chr1	205275206	.	A	T	6847.12	PASS	AC=2;AF=0.989;AN=2;DP=6006;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:5644,382,0:0,0,77,50
chr1	205275207	.	G	T	6847.12	PASS	AC=2;AF=0.989;AN=2;DP=6043;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:5644,382,0:0,0,77,50
chr1	205275421	.	A	G	2916.31	PASS	AC=2;AF=0.989;AN=2;DP=5077;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3803,345,0:0,0,34,81
chr1	205290794	.	G	A	2978.42	PASS	AC=2;AF=0.56;AN=2;DP=4655;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant22-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:5747,554,0:0,0,92,93
chr1	205290965	.	C	T	768.21	PASS	AC=1;AF=0.545;AN=2;DP=1082;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant22-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,31:64:99:766,0,860:10,23,7,24
chr1	205305449	.	C	T	400.41	PASS	AC=1;AF=0.55;AN=2;DP=1256;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant14-variant16-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,35:67:99:729,0,788:16,16,17,18
chr1	205305925	.	G	A	794.92	PASS	AC=1;AF=0.55;AN=2;DP=1954;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant14-variant16-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,37:76:99:885,0,1047:19,20,18,19
chr1	205306102	.	C	T	434.99	PASS	AC=1;AF=0.55;AN=2;DP=840;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant14-variant16-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:517,0,438:8,12,10,7
chr1	205306445	.	C	T	472.43	PASS	AC=1;AF=0.55;AN=2;DP=930;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant14-variant16-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,19:48:99:484,0,804:14,15,8,11
chr1	205307789	.	G	A	719.26	PASS	AC=1;AF=0.55;AN=2;DP=1774;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant14-variant16-variant18-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,41:85:99:927,0,1112:20,24,18,23
chr1	205308335	.	G	A	278.42	PASS	AC=1;AF=0.545;AN=2;DP=1056;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant14-variant16-variant18-variant20-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:682,0,909:24,4,19,4
chr1	205308368	.	C	T	524.62	PASS	AC=1;AF=0.545;AN=2;DP=1907;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant14-variant16-variant18-variant20-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,47:106:99:1086,0,1621:37,22,28,19
chr1	205308591	.	C	T	416.95	PASS	AC=1;AF=0.545;AN=2;DP=1432;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant14-variant16-variant18-variant20-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,19:51:99:554,0,911:10,22,4,15
chr1	205312280	.	C	G	224.78	PASS	AC=2;AF=0.714;AN=2;DP=1558;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1779,132,0:0,0,40,4
chr1	205312848	.	G	A	692.17	PASS	AC=1;AF=0.593;AN=2;DP=1727;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant12-variant13-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant33-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,32:47:99:926,0,454:3,12,9,23
chr1	205313647	.	G	T	735.57	PASS	AC=2;AF=0.966;AN=2;DP=1849;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1220,119,0:0,0,14,26
chr1	205317676	.	T	C	327.23	PASS	AC=1;AF=0.821;AN=2;DP=1620;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:347,0,136:4,3,4,8
chr1	205317684	.	C	A	1055.34	PASS	AC=2;AF=1;AN=2;DP=1567;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:639,48,0:0,0,6,10
chr1	205325458	.	G	A	66.19	PASS	AC=1;AF=0.542;AN=2;DP=264;MQ=60;set=variant-variant6-variant18-variant23-variant24-variant27-variant31-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:329,0,254:7,2,8,3
chr1	205325609	.	C	A	3856.55	PASS	AC=1;AF=0.697;AN=2;DP=3920;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,37:80:99:947,0,1157:26,17,21,16
chr1	205325814	.	C	A	1257.82	PASS	AC=1;AF=0.5;AN=2;DP=81;FS=0.852;FractionInformativeReads=1;MQ=60;MQRankSum=0.885;QD=15.53;ReadPosRankSum=3.325;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,47:81:99:1286,0,894:15,19,23,24
chr1	205385498	.	C	T	5266.32	PASS	AC=1;AF=0.905;AN=2;DP=7481;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,73:168:99:1692,0,2373:52,43,36,37
chr1	205473974	.	C	G	3321.11	PASS	AC=2;AF=1;AN=2;DP=4284;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2456,225,0:0,0,39,36
chr1	205492486	.	C	T	693.67	PASS	AC=1;AF=0.5;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant6-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,33:72:99:836,0,1076:21,18,16,17
chr1	205492756	.	A	G	4330.39	PASS	AC=2;AF=0.943;AN=2;DP=6122;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4180,402,0:0,0,67,67
chr1	205495392	.	A	G	6232.06	PASS	AC=2;AF=0.943;AN=2;DP=9265;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,174:174:99:5726,521,0:0,0,86,88
chr1	205495976	.	A	G	2150.69	PASS	AC=2;AF=1;AN=2;DP=5877;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4225,431,0:0,0,64,80
chr1	205497066	.	G	A	2367.33	PASS	AC=1;AF=0.5;AN=2;DP=1003;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant21-variant26-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,74:151:99:1884,0,2050:41,36,32,42
chr1	205498021	.	T	C	116.87	PASS	AC=2;AF=0.708;AN=2;DP=775;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:937,84,0:0,0,20,8
chr1	205499577	.	C	G	678.8	PASS	AC=1;AF=0.597;AN=2;DP=1248;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:495,0,417:4,9,9,8
chr1	205500401	.	G	A	348.48	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=1.82;FractionInformativeReads=1;MQ=60;MQRankSum=0.467;QD=13.4;ReadPosRankSum=-0.052;SOR=0.264;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:377,0,309:9,2,10,5
chr1	205500719	.	T	A	1611.21	PASS	AC=1;AF=0.5;AN=2;DP=299;FractionInformativeReads=1;set=variant6-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,79:149:99:1987,0,1683:37,33,37,42
chr1	205501173	.	C	T	3415.96	PASS	AC=1;AF=0.5;AN=2;DP=339;FractionInformativeReads=1;MQ=60;set=variant6-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,83:163:99:2027,0,2059:41,39,43,40
chr1	205501181	.	T	C	3068.84	PASS	AC=2;AF=0.662;AN=2;DP=6184;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:6105,486,0:0,0,81,81
chr1	205501469	.	A	G	927.16	PASS	AC=1;AF=0.563;AN=2;DP=2160;MQ=60;set=variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,47:97:99:1302,0,1476:24,26,25,22
chr1	205501521	.	A	G	1281.29	PASS	AC=1;AF=0.563;AN=2;DP=2768;set=variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,58:110:99:1489,0,1247:27,25,32,26
chr1	205501587	.	C	T	1374.26	PASS	AC=1;AF=0.5;AN=2;DP=134;FS=2.182;FractionInformativeReads=0.993;MQ=60;MQRankSum=-0.102;QD=10.26;ReadPosRankSum=-0.165;SOR=0.525;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,61:133:99:1402,0,1727:32,40,30,31
chr1	205501843	.	A	G	522.47	PASS	AC=1;AF=0.563;AN=2;DP=674;MQ=60;set=variant4-variant5-variant7-variant9-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:224,0,380:4,8,3,5
chr1	205501985	.	T	G	269.66	PASS	AC=1;AF=0.595;AN=2;DP=175;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant9-variant11-variant15-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:34:159,0,34:0,2,1,3
chr1	205548619	.	G	A	1045.75	PASS	AC=1;AF=0.542;AN=2;DP=940;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant11-variant15-variant20-variant21-variant26-variant28-variant30-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,26:67:99:602,0,1087:28,13,17,9
chr1	205549122	.	T	A	520.5	PASS	AC=1;AF=0.538;AN=2;DP=671;MQ=60;set=variant-variant7-variant11-variant15-variant17-variant20-variant21-variant26-variant28-variant30-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,15:39:99:482,0,814:5,19,1,14
chr1	205549757	.	A	C	232.08	PASS	AC=1;AF=0.5;AN=2;DP=1148;set=variant2-filterInvariant3-filterInvariant5-variant6-filterInvariant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-filterInvariant19-variant20-variant21-filterInvariant24-variant26-variant27-variant29-variant33-variant34-variant35-variant36-filterInvariant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,9:30:99:274,0,2812:5,16,9,0
chr1	205549763	.	A	C	252.24	PASS	AC=1;AF=0.5;AN=2;DP=1388;set=variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-variant14-variant16-variant17-filterInvariant18-filterInvariant19-variant20-variant21-variant24-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,9:34:99:265,0,3287:9,16,9,0
chr1	205549767	.	G	C	249.23	PASS	AC=1;AF=0.5;AN=2;DP=1537;set=variant2-filterInvariant3-variant5-variant6-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-filterInvariant27-variant28-variant29-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,9:36:99:253,0,3736:10,17,9,0
chr1	205549770	.	A	C	188.98	PASS	AC=1;AF=0.5;AN=2;DP=1644;set=variant2-filterInvariant3-variant5-variant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-filterInvariant20-variant21-filterInvariant24-variant26-filterInvariant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,8:39:99:238,0,4195:13,18,8,0
chr1	205549773	.	T	C	176.93	PASS	AC=1;AF=0.5;AN=2;DP=1638;set=variant2-filterInvariant3-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,8:44:99:209,0,4612:18,18,8,0
chr1	205549775	.	T	C	176.88	PASS	AC=1;AF=0.5;AN=2;DP=1387;set=variant2-filterInvariant3-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant24-variant27-variant28-variant33-variant34-filterInvariant35-variant36-variant37-variant39-variant40-variant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,8:50:99:203,0,4666:21,21,8,0
chr1	205549778	.	T	C	106.31	PASS	AC=1;AF=0.5;AN=2;DP=1246;set=variant2-variant5-variant6-variant7-variant9-filterInvariant11-variant12-variant13-variant14-filterInvariant16-variant17-filterInvariant18-filterInvariant21-variant26-variant28-variant34-filterInvariant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,8:53:99:200,0,4688:22,23,8,0
chr1	205553343	.	G	A	487.68	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=5.172;FractionInformativeReads=1;MQ=60;MQRankSum=-0.568;QD=10.84;ReadPosRankSum=0.637;SOR=0.211;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:516,0,909:5,22,6,12
chr1	205554085	.	G	C	185.23	PASS	AC=2;AF=0.661;AN=2;DP=2767;MQ=60;set=variant-variant3-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3895,270,0:0,0,38,52
chr1	205554095	.	A	C	182.24	PASS	AC=2;AF=0.667;AN=2;DP=2495;MQ=60;set=variant-variant3-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3816,262,0:0,0,34,53
chr1	205555145	.	G	A	91.5	PASS	AC=1;AF=0.672;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:106,0,218:6,1,3,1
chr1	205561511	.	T	A	376.77	PASS	AC=2;AF=0.922;AN=2;DP=244;FS=0;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant38-variant39-variant-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,1,5
chr1	205568213	.	C	T	2001.48	PASS	AC=1;AF=0.563;AN=2;DP=900;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:661,0,592:15,5,18,8
chr1	205568390	.	T	A	2345.03	PASS	AC=2;AF=0.618;AN=2;DP=1280;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant20-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2508,251,0:0,0,35,49
chr1	205568438	.	G	T	1651.65	PASS	AC=1;AF=0.563;AN=2;DP=676;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,28:48:99:813,0,508:8,12,8,20
chr1	205569441	.	A	G	713.94	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0.937;FractionInformativeReads=1;MQ=60;MQRankSum=-0.862;QD=10.5;ReadPosRankSum=-2.537;SOR=0.542;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:742,0,993:23,14,18,13
chr1	205569973	.	T	C	11113.5	PASS	AC=1;AF=0.563;AN=2;DP=4997;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:122,150:272:99:3835,0,3151:72,50,94,56
chr1	205570158	.	A	G	4285.4	PASS	AC=1;AF=0.5;AN=2;DP=368;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.131;QD=11.65;ReadPosRankSum=0.397;SOR=0.688;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:191,177:368:99:4314,0,4865:85,106,79,98
chr1	205570372	.	G	A	1742	PASS	AC=1;AF=0.5;AN=2;DP=128;FS=5.429;FractionInformativeReads=1;MQ=60;MQRankSum=-1.3;QD=13.61;ReadPosRankSum=-2.371;SOR=1.166;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,69:128:99:1770,0,1438:29,30,27,42
chr1	205570406	.	T	A	3447.48	PASS	AC=1;AF=0.563;AN=2;DP=1698;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,52:112:99:1320,0,1508:25,35,29,23
chr1	205570770	.	G	A	920.51	PASS	AC=1;AF=0.55;AN=2;DP=304;set=variant-variant2-variant6-variant7-variant11-variant29-variant30-variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:498,0,342:3,8,2,13
chr1	205570959	.	T	C	107.99	PASS	AC=1;AF=0.636;AN=2;DP=69;FractionInformativeReads=1;set=variant-variant2-variant11-variant15-variant17-variant24-variant26-variant29-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:34:79,0,34:1,1,2,1
chr1	205571031	.	A	G	88.67	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.361;QD=9.85;ReadPosRankSum=-0.876;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:117,0,112:2,2,2,3
chr1	205571467	.	C	T	2251.54	PASS	AC=1;AF=0.563;AN=2;DP=1134;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:725,0,1010:16,20,11,17
chr1	205571793	.	A	G	14903.3	PASS	AC=1;AF=0.563;AN=2;DP=6222;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant15-variant17-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:188,156:344:99:3975,0,4834:84,104,71,85
chr1	205580316	.	T	C	6910.69	PASS	AC=2;AF=0.571;AN=2;DP=6545;MQ=60;set=variant-variant2-variant6-variant11-variant15-variant20-variant24-variant26-variant28-variant29-variant30-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,450:450:99:14604,1349,0:0,0,194,256
chr1	205582145	.	C	CT	3313.38	PASS	AC=1;AF=0.5;AN=2;DP=1164;set=variant6-variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:150,179:329:99:3523,0,2838:76,74,86,93
chr1	205582486	.	G	T	128.15	PASS	AC=2;AF=0.55;AN=2;DP=195;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant11-variant15-variant20-variant26-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:775,66,0:0,0,11,11
chr1	205582791	.	T	TCCC	277.64	PASS	AC=1;AF=0.7;AN=2;DP=40;set=variant13-variant25-variant31-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:177,0,449:0,6,5,0
chr1	205582799	.	A	C	278.66	PASS	AC=1;AF=0.538;AN=2;DP=128;set=variant3-variant9-variant13-variant21-variant22-variant25-variant27-variant29-variant31-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:175,0,507:1,6,5,0
chr1	205582805	.	A	C	275.55	PASS	AC=1;AF=0.538;AN=2;DP=133;set=variant3-variant9-variant13-variant21-variant22-variant25-variant27-variant29-variant31-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:172,0,529:1,7,5,0
chr1	205583410	.	C	A	964.8	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=2.821;FractionInformativeReads=1;MQ=60;MQRankSum=0.618;QD=10.84;ReadPosRankSum=-1.622;SOR=0.829;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,38:89:99:993,0,1442:27,24,17,21
chr1	205583600	.	GA	G	4073.88	PASS	AC=2;AF=0.545;AN=2;DP=3629;MQ=60;set=variant-variant2-variant6-variant11-variant15-variant20-variant26-variant29-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,303:303:99:9187,910,0:0,0,174,129
chr1	205584231	.	T	TA	1514.17	PASS	AC=2;AF=0.545;AN=2;DP=2093;set=variant-variant2-variant6-variant11-variant15-variant20-variant26-variant29-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:5,170:175:99:4377,410,0:2,3,74,96
chr1	205584518	.	CAAA	CA,CAA,CAAAA,C,CAAAAA	113.22	PASS	AC=0,0,0,1,0;AF=0.143,0.167,0.119,0.048,0.024;AN=2;DP=648;set=variant-variant4-variant6-variant7-filterInvariant9-filterInvariant10-variant14-filterInvariant19-variant21-variant25-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42	GT:DP:GQ:SB	0/4:21:99:9,6,5,1
chr1	205588637	.	C	T	6175.5	PASS	AC=2;AF=0.545;AN=2;DP=5112;MQ=60;set=variant-variant2-variant6-variant11-variant15-variant20-variant26-variant29-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,418:418:99:13232,1252,0:0,0,225,193
chr1	205589574	.	C	T	1723.68	PASS	AC=2;AF=0.563;AN=2;DP=1077;MQ=60;set=variant-variant2-variant6-variant11-variant15-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3489,329,0:0,0,53,57
chr1	205600635	.	GCCCGGC	G	31.66	PASS	AC=2;AF=0.625;AN=2;DP=32;MQ=60;set=variant2-variant11-variant15-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:458,36,0:0,0,8,4
chr1	205600977	.	C	A	198.91	PASS	AC=1;AF=0.5;AN=2;DP=165;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant11-variant15-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:402,0,352:7,6,9,3
chr1	205601119	.	T	A	627.41	PASS	AC=1;AF=0.5;AN=2;DP=526;MQ=60;set=variant-variant2-variant11-variant15-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,48:73:99:1161,0,553:15,10,21,27
chr1	205615680	.	T	TA	45.84	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=6.264;FractionInformativeReads=1;MQ=60;MQRankSum=0.597;QD=4.17;ReadPosRankSum=-1.246;SOR=2.833;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:83:83,0,177:4,3,4,0
chr1	205615791	.	A	G	3736.5	PASS	AC=1;AF=0.6;AN=2;DP=2697;MQ=60;set=variant3-variant4-variant8-variant9-variant11-variant14-variant16-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,43:115:99:830,0,1600:38,34,24,19
chr1	205615936	.	T	TA	101.73	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=2.066;FractionInformativeReads=0.727;MQ=60;MQRankSum=-1.194;QD=3.08;ReadPosRankSum=-0.949;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:139,0,353:5,11,1,7
chr1	205615947	.	C	A	1175.41	PASS	AC=2;AF=0.909;AN=2;DP=1470;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:793,72,0:0,0,6,18
chr1	205626904	.	G	A	608.93	PASS	AC=1;AF=0.5;AN=2;DP=250;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant12-variant15-variant21-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:509,0,603:16,0,12,2
chr1	205626995	.	C	G	2768.27	PASS	AC=1;AF=0.5;AN=2;DP=1638;MQ=60;set=variant-variant2-variant12-variant15-variant21-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:98,77:175:99:1943,0,2299:60,38,52,25
chr1	205627030	.	T	C	3330.27	PASS	AC=1;AF=0.5;AN=2;DP=262;FS=1.493;FractionInformativeReads=1;MQ=60;MQRankSum=-0.303;QD=12.71;ReadPosRankSum=1.16;SOR=0.806;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:127,135:262:99:3358,0,2816:70,57,78,57
chr1	205627101	.	AC	A	3736.06	PASS	AC=1;AF=0.5;AN=2;DP=3214;MQ=60;set=variant-variant2-variant12-variant15-variant20-variant21-variant26-variant29-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:145,131:276:99:3223,0,3672:68,77,64,67
chr1	205628073	.	G	A	811.06	PASS	AC=1;AF=0.5;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant12-variant15-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,35:66:99:942,0,708:14,17,16,19
chr1	205630893	.	A	G	678.83	PASS	AC=1;AF=0.5;AN=2;DP=966;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:486,0,405:10,4,7,10
chr1	205649447	.	G	A	211.97	PASS	AC=1;AF=0.5;AN=2;DP=94;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:203,0,228:4,4,6,4
chr1	205683280	.	T	C	11730.1	PASS	AC=2;AF=1;AN=2;DP=16825;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,421:421:99:13006,1261,0:0,0,199,222
chr1	205684021	.	A	G	502.01	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.147;QD=12.87;ReadPosRankSum=-1.685;SOR=0.519;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:530,0,686:14,8,10,7
chr1	205684175	.	G	C	3484.7	PASS	AC=1;AF=0.5;AN=2;DP=444;FractionInformativeReads=1;MQ=60;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:104,104:208:99:2749,0,2617:66,38,64,40
chr1	205686624	.	CT	C,CTT	291.15	PASS	AC=1,0;AF=0.435,0.065;AN=2;DP=5106;MQ=60;set=filterInvariant-filterInvariant2-filterInvariant3-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-filterInvariant16-filterInvariant19-filterInvariant20-filterInvariant24-filterInvariant25-variant27-filterInvariant28-filterInvariant30-variant31-filterInvariant32-filterInvariant33-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant40-filterInvariant41-variant42-filterInvariant44	GT:DP:GQ:SB	0/1:134:99:51,57,12,14
chr1	205687213	.	TA	T,TAA	911.53	PASS	AC=1,0;AF=0.307,0.193;AN=2;DP=13087;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-variant6-filterInvariant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:235:99:74,68,56,37
chr1	205696671	.	G	A	146.45	PASS	AC=1;AF=0.966;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:163,0,110:3,1,4,1
chr1	205737450	.	T	C	908.22	PASS	AC=1;AF=0.955;AN=2;DP=2592;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:993,0,902:9,20,2,27
chr1	205737665	.	G	GT,GTT	282.32	PASS	AC=1,0;AF=0.866,0.037;AN=2;DP=578;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:11:73:1,3,4,3
chr1	205737956	.	G	C	464.01	PASS	AC=1;AF=0.955;AN=2;DP=1420;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:381,0,357:10,2,10,5
chr1	205738166	.	T	C	2846.14	PASS	AC=1;AF=0.955;AN=2;DP=10183;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:137,123:260:99:2999,0,3291:72,65,62,61
chr1	205738251	.	C	A	1628.01	PASS	AC=1;AF=0.955;AN=2;DP=8923;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:120,118:238:99:2832,0,2905:55,65,49,69
chr1	205738975	.	AC	A	477.94	PASS	AC=1;AF=0.955;AN=2;DP=1851;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:38,13:51:99:271,0,1067:24,14,8,5
chr1	205739192	.	T	C	1583.98	PASS	AC=1;AF=0.955;AN=2;DP=4195;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:61,51:112:99:1264,0,1629:28,33,22,29
chr1	205739396	.	T	G	1081.37	PASS	AC=1;AF=0.893;AN=2;DP=4049;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,53:98:99:1309,0,1131:26,19,28,25
chr1	205740403	.	A	G	88.49	PASS	AC=1;AF=0.94;AN=2;DP=333;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:72:117,0,72:2,0,3,0
chr1	205801872	.	A	G	1237.15	PASS	AC=1;AF=0.743;AN=2;DP=4899;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,71:149:99:1740,0,1733:36,42,33,38
chr1	205809642	.	G	C	1494.17	PASS	AC=1;AF=0.806;AN=2;DP=2978;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,46:102:99:1140,0,1555:20,36,18,28
chr1	205810947	.	C	T	1006.23	PASS	AC=1;AF=0.5;AN=2;DP=576;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant16-variant18-variant33-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,20:67:99:492,0,1356:30,17,14,6
chr1	205811828	.	A	T	1588.64	PASS	AC=1;AF=0.536;AN=2;DP=1973;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant13-variant17-variant19-variant25-variant27-variant28-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,82:146:99:2006,0,1485:32,32,41,41
chr1	205811996	.	C	T	571.15	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.279;QD=13.28;ReadPosRankSum=-1.421;SOR=0.634;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:599,0,590:6,16,6,15
chr1	205813672	.	T	C	414.07	PASS	AC=1;AF=0.629;AN=2;DP=441;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:322,0,220:5,3,8,2
chr1	205813677	.	T	C	414.07	PASS	AC=2;AF=0.955;AN=2;DP=670;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:741,54,0:0,0,14,4
chr1	205814497	.	T	C	1429.96	PASS	AC=2;AF=0.943;AN=2;DP=5189;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4299,423,0:0,0,74,67
chr1	205883297	.	G	C	1195.86	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=0.768;FractionInformativeReads=1;MQ=60;MQRankSum=-1.993;QD=12.59;ReadPosRankSum=-0.512;SOR=0.671;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,43:95:99:1224,0,1388:25,27,22,21
chr1	205883780	.	C	G	424.25	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=1.297;FractionInformativeReads=1;MQ=60;MQRankSum=0.412;QD=11.78;ReadPosRankSum=0;SOR=0.976;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:452,0,562:11,8,11,6
chr1	205884529	.	T	A	675.73	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=1.905;FractionInformativeReads=1;MQ=60;MQRankSum=0.577;QD=8.78;ReadPosRankSum=-2.221;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,36:77:99:704,0,937:19,22,14,22
chr1	205884646	.	CTGTGTG	CTG,CTGTGTGTG,C,CTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTG	339.76	PASS	AC=0,0,0,0,1;AF=0.426,0.222,0.093,0.019,0.019;AN=2;DP=548;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant19-variant20-variant-variant21-variant22-variant23-variant26-variant28-variant25-variant30-variant31-variant35-variant36-variant39-variant41-variant42	GT:DP:GQ:SB	0/5:5:74:1,2,0,2
chr1	205886225	.	TA	TAA,T	333.52	PASS	AC=1,0;AF=0.25,0.3;AN=2;DP=187;MQ=60;set=variant2-filterInvariant3-variant4-variant5-variant12-filterInvariant16-filterInvariant22-filterInvariant29-variant31-variant41	GT:DP:GQ:SB	0/1:14:99:5,1,4,4
chr1	205886243	.	A	G	322.58	PASS	AC=1;AF=0.5;AN=2;DP=145;MQ=60;set=variant2-variant4-variant5-variant26-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:352,0,565:5,2,4,4
chr1	205886258	.	A	AG	417.17	PASS	AC=1;AF=0.5;AN=2;DP=202;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant26-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:415,0,681:7,4,6,5
chr1	205886376	.	T	A	763.76	PASS	AC=1;AF=0.5;AN=2;DP=738;MQ=60;set=variant2-variant4-variant5-variant20-variant26-variant31-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,37:71:99:813,0,778:18,16,21,16
chr1	205886780	.	C	T	217.62	PASS	AC=1;AF=0.5;AN=2;DP=113;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant20-variant26-variant31-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:224,0,196:1,5,0,6
chr1	205887981	.	T	C	994.82	PASS	AC=1;AF=0.5;AN=2;DP=820;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant20-variant26-variant31-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,42:91:99:1102,0,1256:29,20,27,15
chr1	205889532	.	G	A	346.29	PASS	AC=1;AF=0.5;AN=2;DP=126;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant20-variant26-variant31-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:231,0,114:2,4,1,5
chr1	205890679	.	T	C	3228.27	PASS	AC=2;AF=0.919;AN=2;DP=6842;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4424,449,0:0,0,88,62
chr1	205893753	.	AT	A	160.39	PASS	AC=1;AF=0.559;AN=2;DP=534;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant12-variant20-variant23-variant24-variant26-variant27-variant31-variant33-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:315,0,535:6,14,5,8
chr1	205896475	.	C	T	2237.1	PASS	AC=2;AF=0.919;AN=2;DP=3466;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2666,231,0:0,0,40,37
chr1	205896647	.	A	G	2173.05	PASS	AC=1;AF=0.5;AN=2;DP=1676;MQ=60;set=variant2-variant4-variant5-variant20-variant26-variant31-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:90,90:180:99:2183,0,2225:44,46,47,43
chr1	205896948	.	A	G	293.1	PASS	AC=1;AF=0.75;AN=2;DP=765;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:413,0,263:7,1,8,3
chr1	205901788	.	G	T	252.99	PASS	AC=1;AF=0.583;AN=2;DP=443;MQ=60;set=variant-variant2-variant5-variant9-variant10-variant12-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:221,0,273:7,2,7,1
chr1	206137414	.	C	A	66.21	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=30.03;MQRankSum=0.421;QD=3.68;ReadPosRankSum=-0.609;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:94:94,0,243:6,6,3,3
chr1	206230986	.	G	A	2031.02	PASS	AC=1;AF=0.5;AN=2;DP=1576;MQ=60;set=variant3-variant4-variant5-variant13-variant14-variant29-variant32-variant34-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,54:114:99:1503,0,1649:27,33,24,30
chr1	206231152	.	G	A	1688.09	PASS	AC=1;AF=0.5;AN=2;DP=1224;MQ=60;set=variant3-variant4-variant5-variant13-variant14-variant29-variant32-variant34-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,43:104:99:1055,0,1407:27,34,19,24
chr1	206231203	.	G	A	1177.13	PASS	AC=1;AF=0.5;AN=2;DP=879;MQ=60;set=variant3-variant4-variant5-variant13-variant14-variant29-variant32-variant34-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,35:74:99:954,0,1134:16,23,18,17
chr1	206231259	.	A	G	426.92	PASS	AC=1;AF=0.531;AN=2;DP=975;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant13-variant14-variant15-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:1167,0,1205:15,14,12,16
chr1	206231264	.	G	A	1288.59	PASS	AC=1;AF=0.5;AN=2;DP=674;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant13-variant14-variant29-variant32-variant34-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:1136,0,1175:14,13,13,16
chr1	206231268	.	C	G	1105.65	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=1.047;FractionInformativeReads=1;MQ=60;MQRankSum=1.384;QD=20.47;ReadPosRankSum=-3.114;SOR=0.592;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,27:54:99:1134,0,1181:15,12,13,14
chr1	206231429	.	T	A	1170.76	PASS	AC=1;AF=0.5;AN=2;DP=590;MQ=60;set=variant3-variant4-variant5-variant13-variant14-variant29-variant32-variant34-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,20:52:99:520,0,764:15,17,8,12
chr1	206238974	.	T	C	786.84	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=1.655;FractionInformativeReads=1;MQ=60;MQRankSum=-1.238;QD=7.22;ReadPosRankSum=-0.944;SOR=0.911;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,37:109:99:815,0,1869:31,41,14,23
chr1	206239574	.	T	C	630.04	PASS	AC=1;AF=0.5;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant23-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,22:37:99:582,0,522:3,12,6,16
chr1	206239665	.	A	G	292.63	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=2.48;FractionInformativeReads=1;MQ=60;MQRankSum=1.256;QD=22.51;ReadPosRankSum=0.212;SOR=0.148;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:321,0,333:1,4,4,4
chr1	206239668	.	A	G	371.27	PASS	AC=1;AF=0.5;AN=2;DP=60;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:321,0,333:1,4,4,4
chr1	206239956	.	A	G	374.07	PASS	AC=1;AF=0.583;AN=2;DP=53;FractionInformativeReads=1;MQ=60;set=variant15-variant20-variant23-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:156,0,117:3,1,3,1
chr1	206240033	.	G	A	537.36	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=12.439;FractionInformativeReads=1;MQ=60;MQRankSum=1.387;QD=16.28;ReadPosRankSum=-2.359;SOR=3.056;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:566,0,453:9,8,14,2
chr1	206240149	.	C	T	1601.27	PASS	AC=1;AF=0.5;AN=2;DP=137;FS=1.358;FractionInformativeReads=0.993;MQ=60;MQRankSum=-0.699;QD=11.69;ReadPosRankSum=0.603;SOR=0.54;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,66:136:99:1629,0,1511:38,32,33,33
chr1	206243359	.	C	G	986.12	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=10.961;FractionInformativeReads=0.988;MQ=60;MQRankSum=0.447;QD=11.6;ReadPosRankSum=-0.954;SOR=1.739;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,36:84:99:1014,0,1378:24,24,25,11
chr1	206317304	.	A	G	136.64	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;set=variant7-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:136,0,360:7,4,3,2
chr1	206317334	.	T	C	114.62	PASS	AC=1;AF=0.5;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant7-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:179,0,417:9,9,5,2
chr1	206317394	.	C	G	488.92	PASS	AC=1;AF=0.5;AN=2;DP=137;FractionInformativeReads=1;MQ=60;set=variant7-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,19:46:99:453,0,793:14,13,11,8
chr1	206317568	.	G	A	881.48	PASS	AC=1;AF=0.5;AN=2;DP=277;MQ=60;set=variant7-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,47:85:99:1191,0,1084:18,20,18,29
chr1	206327801	.	A	G	295.66	PASS	AC=1;AF=0.588;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant11-variant14-variant17-variant25-variant30-variant33-variant34-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:383,0,341:0,10,1,9
chr1	206331008	.	T	C	1097.47	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=3.339;FractionInformativeReads=1;MQ=60;MQRankSum=-1.702;QD=15.03;ReadPosRankSum=-1.311;SOR=0.39;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,42:73:99:1126,0,850:22,9,26,16
chr1	206331447	.	G	T	613.7	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.739;QD=8.18;ReadPosRankSum=-1.221;SOR=0.624;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,28:75:99:642,0,1347:21,26,13,15
chr1	206331566	.	C	T	1254.98	PASS	AC=1;AF=0.5;AN=2;DP=116;FS=1.537;FractionInformativeReads=1;MQ=60;MQRankSum=-1.335;QD=10.82;ReadPosRankSum=0.718;SOR=0.544;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,51:116:99:1283,0,1842:42,23,31,20
chr1	206516159	.	C	T	385	PASS	AC=1;AF=0.5;AN=2;DP=890;FS=0;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:231,0,364:13,0,9,0
chr1	206516261	.	C	T	1383.04	PASS	AC=1;AF=0.5;AN=2;DP=7344;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:84,84:168:99:1852,0,2099:63,21,53,31
chr1	206516275	.	C	G	838.63	PASS	AC=1;AF=0.5;AN=2;DP=198;FS=6.003;FractionInformativeReads=1;MQ=41.68;MQRankSum=1.794;QD=4.24;ReadPosRankSum=-2.212;SOR=0.374;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:143,55:198:99:867,0,3655:94,49,31,24
chr1	206566195	.	C	T	600.54	PASS	AC=1;AF=0.5;AN=2;DP=3835;FractionInformativeReads=1;set=filterInvariant2-filterInvariant4-filterInvariant6-filterInvariant7-filterInvariant9-filterInvariant10-filterInvariant12-filterInvariant16-filterInvariant22-filterInvariant24-filterInvariant25-variant26-filterInvariant29-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant40-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:156,29:185:99:170,0,3621:69,87,14,15
chr1	206566860	.	TA	T,TAA	1207.73	PASS	AC=1,0;AF=0.489,0.011;AN=2;DP=7735;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:173:99:69,39,57,8
chr1	206566904	.	T	C	4778.55	PASS	AC=1;AF=0.5;AN=2;DP=13435;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:173,159:332:99:4113,0,4302:98,75,116,43
chr1	206567100	.	C	T	3891.5	PASS	AC=1;AF=0.5;AN=2;DP=13887;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,121:273:99:2920,0,4160:49,103,41,80
chr1	206623685	.	G	T	4103.51	PASS	AC=2;AF=0.744;AN=2;DP=6638;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5343,524,0:0,0,95,80
chr1	206623866	.	C	T	356.53	PASS	AC=2;AF=0.638;AN=2;DP=1235;MQ=60;set=variant2-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1491,123,0:0,0,9,32
chr1	206626607	.	G	A	1649.55	PASS	AC=2;AF=0.633;AN=2;DP=4415;MQ=60;set=variant2-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4875,457,0:0,0,62,91
chr1	206626779	.	A	G	476.74	PASS	AC=2;AF=0.795;AN=2;DP=1445;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1107,101,0:0,0,13,21
chr1	206626828	.	C	G	200.76	PASS	AC=2;AF=0.653;AN=2;DP=567;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:62:757,62,0:0,0,5,16
chr1	206631518	.	G	T	513.17	PASS	AC=2;AF=0.833;AN=2;DP=281;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:352,27,0:0,0,9,0
chr1	206631532	.	T	A	132.63	PASS	AC=2;AF=0.68;AN=2;DP=231;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant11-variant14-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:514,45,0:0,0,13,2
chr1	206635245	.	TAC	TACACAC,T,TACAC,TACACACAC	277.64	PASS	AC=0,2,0,0;AF=0.44,0.393,0.071,0.036;AN=2;DP=651;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:14:42:0,0,6,8
chr1	206636879	.	T	C	896.1	PASS	AC=2;AF=0.648;AN=2;DP=2635;MQ=60;set=variant2-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3037,288,0:0,0,57,39
chr1	206637395	.	C	T	544.51	PASS	AC=2;AF=0.629;AN=2;DP=2260;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1882,173,0:0,0,30,28
chr1	206637799	.	C	G	1219.77	PASS	AC=1;AF=0.625;AN=2;DP=3034;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:1023,0,1248:16,29,14,28
chr1	206644058	.	C	T	371.14	PASS	AC=2;AF=0.821;AN=2;DP=970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:63:534,63,0:0,0,14,8
chr1	206646427	.	C	A	387.62	PASS	AC=1;AF=0.655;AN=2;DP=921;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:692,0,471:13,1,17,3
chr1	206646666	.	C	A	932.98	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.214;QD=12.78;ReadPosRankSum=0.15;SOR=0.61;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,40:73:99:961,0,891:10,23,13,27
chr1	206647742	.	A	G	3223.55	PASS	AC=2;AF=1;AN=2;DP=7149;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4783,452,0:0,0,90,61
chr1	206647787	.	T	C	3973.81	PASS	AC=2;AF=0.841;AN=2;DP=8262;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5496,546,0:0,0,93,89
chr1	206647981	.	A	G	789.39	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.152;QD=13.85;ReadPosRankSum=-0.535;SOR=0.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:818,0,809:15,15,14,13
chr1	206648037	.	C	G	430.99	PASS	AC=1;AF=0.559;AN=2;DP=2121;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,37:68:99:919,0,894:16,15,19,18
chr1	206648378	.	G	A	507.11	PASS	AC=2;AF=0.731;AN=2;DP=1118;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:1102,98,0:0,0,9,24
chr1	206648450	.	C	T	236.58	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.523;QD=14.79;ReadPosRankSum=1.628;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:265,0,263:1,7,1,7
chr1	206649952	.	G	A	511.01	PASS	AC=1;AF=0.5;AN=2;DP=639;MQ=60;set=variant-variant8-variant11-variant14-variant16-variant18-variant21-variant24-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,36:65:99:961,0,722:18,11,20,16
chr1	206651351	.	G	A	419.03	PASS	AC=1;AF=0.5;AN=2;DP=231;FractionInformativeReads=1;MQ=60;set=variant11-variant14-variant16-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,12:39:99:284,0,680:11,16,5,7
chr1	206652524	.	T	C	1597.44	PASS	AC=1;AF=0.5;AN=2;DP=702;FractionInformativeReads=1;MQ=60;set=variant11-variant14-variant16-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,68:119:99:1878,0,1310:18,33,23,45
chr1	206664396	.	A	T	997.06	PASS	AC=2;AF=0.841;AN=2;DP=1378;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1111,96,0:0,0,15,17
chr1	206664407	.	T	G	403.02	PASS	AC=2;AF=0.818;AN=2;DP=1488;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:990,87,0:0,0,14,15
chr1	206664526	.	G	A	711.17	PASS	AC=1;AF=0.5;AN=2;DP=214;MQ=60;set=variant18-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,44:67:99:775,0,553:15,8,23,21
chr1	206665052	.	C	T	2991.93	PASS	AC=1;AF=0.5;AN=2;DP=216;FS=1.707;FractionInformativeReads=1;MQ=60;MQRankSum=-0.691;QD=13.85;ReadPosRankSum=2.033;SOR=0.564;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:95,121:216:99:3020,0,2323:36,59,50,71
chr1	206665328	.	G	A	851.56	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.275;QD=17.38;ReadPosRankSum=1.231;SOR=0.705;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,29:49:99:880,0,612:9,11,13,16
chr1	206665636	.	A	G	922.76	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0.913;FractionInformativeReads=1;MQ=60;MQRankSum=-1.806;QD=12.47;ReadPosRankSum=0.245;SOR=0.847;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,32:74:99:951,0,1090:26,16,21,11
chr1	206665758	.	G	A	2724.25	PASS	AC=1;AF=0.5;AN=2;DP=233;FS=0.477;FractionInformativeReads=0.996;MQ=60;MQRankSum=1.349;QD=11.69;ReadPosRankSum=0.672;SOR=0.733;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:118,114:232:99:2752,0,2790:63,55,62,52
chr1	206665896	.	C	G	2006.69	PASS	AC=2;AF=0.818;AN=2;DP=6417;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:5884,462,0:0,0,70,83
chr1	206665916	.	A	G	1910.65	PASS	AC=1;AF=0.5;AN=2;DP=151;FS=3.83;FractionInformativeReads=1;MQ=60;MQRankSum=1.196;QD=12.65;ReadPosRankSum=3.995;SOR=0.994;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,70:151:99:1939,0,2317:41,40,30,40
chr1	206666529	.	C	A	444.51	PASS	AC=1;AF=0.5;AN=2;DP=136;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,26:63:99:579,0,987:18,19,15,11
chr1	206666734	.	T	G	390.62	PASS	AC=1;AF=0.571;AN=2;DP=1569;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant15-variant18-variant19-variant20-variant23-variant25-variant26-variant27-variant30-variant31-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:621,0,686:12,15,10,15
chr1	206666803	.	G	A	610.89	PASS	AC=1;AF=0.5;AN=2;DP=93;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:308,0,595:9,15,6,10
chr1	206667441	.	G	C,A	336.04	PASS	AC=1,1;AF=0.054,0.607;AN=2;DP=1698;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant22-variant23-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:DP:GQ:SB	2/1:65:99:0,0,23,42
chr1	206669958	.	G	A	960.85	PASS	AC=1;AF=0.638;AN=2;DP=2417;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,38:73:99:961,0,941:20,15,15,23
chr1	206670169	.	G	C	453.58	PASS	AC=1;AF=0.638;AN=2;DP=1426;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,38:67:99:947,0,722:11,18,15,23
chr1	206670258	.	G	GGGAA	364.45	PASS	AC=2;AF=0.636;AN=2;DP=741;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:945,63,0:0,0,7,14
chr1	206670827	.	G	T	905.91	PASS	AC=1;AF=0.655;AN=2;DP=3566;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,61:122:99:1528,0,1490:37,24,35,26
chr1	206680983	.	A	C	648	PASS	AC=2;AF=0.795;AN=2;DP=3864;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1567,168,0:0,0,28,28
chr1	206681137	.	G	T	305.02	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.965;QD=16.95;ReadPosRankSum=1.221;SOR=0.976;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,14:18:77:333,0,77:2,2,6,8
chr1	206681323	.	C	T	867.63	PASS	AC=1;AF=0.5;AN=2;DP=104;FS=2.563;FractionInformativeReads=1;MQ=60;MQRankSum=-2.223;QD=8.34;ReadPosRankSum=-1.898;SOR=0.843;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,42:104:99:896,0,1405:32,30,19,23
chr1	206730641	.	C	A	1749.63	PASS	AC=1;AF=0.6;AN=2;DP=1137;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant12-variant14-variant16-variant17-variant19-variant21-variant23-variant25-variant26-variant33-variant34-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:429,0,493:9,12,5,13
chr1	206730691	.	G	C	1515.11	PASS	AC=1;AF=0.6;AN=2;DP=913;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant12-variant14-variant16-variant17-variant19-variant21-variant23-variant25-variant26-variant33-variant34-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:447,0,365:8,9,6,12
chr1	206758077	.	T	A	2076.98	PASS	AC=2;AF=0.907;AN=2;DP=5030;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3619,338,0:0,0,38,75
chr1	206760474	.	T	C	2081	PASS	AC=2;AF=0.898;AN=2;DP=3933;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2849,279,0:0,0,53,40
chr1	206761938	.	T	C	2022.02	PASS	AC=2;AF=0.64;AN=2;DP=1820;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant33-variant34-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2195,219,0:0,0,43,30
chr1	206762455	.	C	T	2525.52	PASS	AC=1;AF=0.5;AN=2;DP=525;FractionInformativeReads=1;MQ=60;set=variant25-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,104:197:99:2552,0,2388:42,51,44,60
chr1	206766799	.	GGAGA	G,GGA	175.94	PASS	AC=1,0;AF=0.618,0.029;AN=2;DP=222;set=variant2-variant3-variant4-variant6-variant7-variant8-variant12-variant16-variant19-variant20-variant21-variant30-variant33-variant38-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:13:99:6,3,4,0
chr1	206766825	.	CGA	C	213.51	PASS	AC=2;AF=0.658;AN=2;DP=418;set=variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant18-variant21-variant24-variant25-variant31-variant33-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:47:478,47,0:0,0,13,3
chr1	206766857	.	C	CGTGT,T,CGTGTGTGTGT,CGTGTGTGT,CGTGTGT	490.85	PASS	AC=0,0,2,0,0;AF=0.028,0.389,0.139,0.083,0.056;AN=2;DP=546;set=variant2-variant16-variant-variant19-variant9-variant20-variant21-variant25-variant27-variant30-variant31-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	3/3:17:71:0,0,9,8
chr1	206769047	.	T	C	1803.88	PASS	AC=2;AF=0.63;AN=2;DP=1230;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant12-variant14-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant33-variant34-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2306,207,0:0,0,49,20
chr1	206772753	.	A	G	1142.34	PASS	AC=2;AF=0.898;AN=2;DP=1460;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1262,114,0:0,0,25,13
chr1	206773659	.	A	G	3390.6	PASS	AC=2;AF=0.989;AN=2;DP=4048;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,75:76:99:2327,197,0:1,0,29,46
chr1	206776200	.	C	T	2086.86	PASS	AC=2;AF=0.898;AN=2;DP=2432;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1969,132,0:0,0,34,10
chr1	206776203	.	T	C	2168.48	PASS	AC=2;AF=1;AN=2;DP=2586;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1969,132,0:0,0,34,10
chr1	206776460	.	G	A	2261.4	PASS	AC=1;AF=0.5;AN=2;DP=446;MQ=60;set=variant25-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,73:137:99:1988,0,1586:27,37,30,43
chr1	206778642	.	A	C	360.85	PASS	AC=2;AF=0.63;AN=2;DP=280;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant12-variant14-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant33-variant34-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:443,30,0:0,0,10,0
chr1	206785955	.	T	G	152.4	PASS	AC=1;AF=0.5;AN=2;DP=102;MQ=60;set=variant10-variant25-variant29-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:80:80,0,237:2,6,1,3
chr1	206785978	.	C	T	216.42	PASS	AC=1;AF=0.591;AN=2;DP=154;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant16-variant19-variant20-variant26-variant27-variant30-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,118:1,3,0,3
chr1	206786006	.	C	G	79.71	PASS	AC=1;AF=0.5;AN=2;DP=50;FractionInformativeReads=1;MQ=60;set=variant10-variant25-variant29-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:71:78,0,71:0,2,0,2
chr1	206856203	.	C	T	765.12	PASS	AC=1;AF=0.5;AN=2;DP=128;FractionInformativeReads=1;MQ=60;set=variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,23:31:99:758,0,223:7,1,19,4
chr1	206856486	.	C	T	488.44	PASS	AC=1;AF=0.5;AN=2;DP=122;FractionInformativeReads=1;MQ=60;set=variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,22:35:99:683,0,275:5,8,6,16
chr1	206904644	.	CGT	CGTGT,C	1043.65	PASS	AC=1,0;AF=0.45,0.05;AN=2;DP=1932;MQ=60;set=variant9-variant10-filterInvariant14-variant17-variant21-variant22-filterInvariant24-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:75:99:12,26,9,28
chr1	206905040	.	C	T	1065.83	PASS	AC=1;AF=0.5;AN=2;DP=374;FractionInformativeReads=1;MQ=60;set=variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,55:97:99:1341,0,1019:25,17,31,24
chr1	206905618	.	G	T	646.72	PASS	AC=1;AF=0.5;AN=2;DP=360;FractionInformativeReads=1;MQ=60;set=variant7-variant33-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,56:96:99:1397,0,1066:18,22,27,29
chr1	206906625	.	ATGTGTGTG	A,ATGTGTG,ATGTG	1004.43	PASS	AC=0,0,1;AF=0.026,0.303,0.382;AN=2;DP=2416;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:48:99:8,18,6,16
chr1	206906745	.	G	A	510.97	PASS	AC=1;AF=0.5;AN=2;DP=162;FractionInformativeReads=1;MQ=60;set=variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:408,0,402:6,8,10,7
chr1	206943351	.	T	C	676.08	PASS	AC=2;AF=1;AN=2;DP=1548;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.141;ReadPosRankSum=1.648;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1095,93,0:0,0,8,23
chr1	206944114	.	C	T	1157.41	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=2.994;FractionInformativeReads=0.988;MQ=60;MQRankSum=0.289;QD=13.78;ReadPosRankSum=1.397;SOR=1.112;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,46:83:99:1186,0,757:20,17,29,17
chr1	206944233	.	A	G	1944.46	PASS	AC=1;AF=0.881;AN=2;DP=4630;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,50:110:99:1209,0,1486:26,34,28,22
chr1	206944645	.	T	C	1490.29	PASS	AC=1;AF=0.805;AN=2;DP=1738;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:631,0,779:17,6,17,4
chr1	206944861	.	A	C	3110.69	PASS	AC=1;AF=0.805;AN=2;DP=3412;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,49:93:99:1244,0,1142:19,25,15,34
chr1	206972072	.	C	T	302.52	PASS	AC=2;AF=0.694;AN=2;DP=915;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1018,81,0:0,0,23,4
chr1	206972592	.	CAAAT	C	229.7	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=0.941;MQ=60;MQRankSum=-1.059;QD=13.51;ReadPosRankSum=-0.423;SOR=1.002;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:267,0,526:2,7,1,6
chr1	207002356	.	CTT	CTTT,C,CT,CTTTT	142.41	PASS	AC=0,0,1,0;AF=0.206,0.044,0.25,0.029;AN=2;DP=1159;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	0/3:20:76:3,9,1,7
chr1	207007641	.	C	G	386.36	PASS	AC=1;AF=0.893;AN=2;DP=1151;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:235,0,479:10,10,7,3
chr1	207009910	.	T	C	680.3	PASS	AC=1;AF=0.884;AN=2;DP=664;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:309,0,285:8,2,8,2
chr1	207014472	.	A	C	3339.06	PASS	AC=1;AF=0.817;AN=2;DP=4418;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,49:96:99:1233,0,1146:25,22,24,25
chr1	207014776	.	C	T	449.91	PASS	AC=1;AF=0.884;AN=2;DP=649;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:219,0,248:0,7,1,5
chr1	207015957	.	T	C	2765.85	PASS	AC=1;AF=0.78;AN=2;DP=4199;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,56:105:99:1343,0,1085:24,25,28,28
chr1	207016225	.	A	G	364.32	PASS	AC=1;AF=0.813;AN=2;DP=1134;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:416,0,294:6,8,8,11
chr1	207038686	.	C	T	538.2	PASS	AC=1;AF=0.5;AN=2;DP=236;MQ=60;set=variant3-variant4-variant6-variant17-variant19-variant28-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:223,0,277:7,0,6,0
chr1	207040577	.	G	A	428.05	PASS	AC=1;AF=0.793;AN=2;DP=673;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:336,0,325:9,1,11,0
chr1	207040659	.	G	A	1999.12	PASS	AC=1;AF=0.793;AN=2;DP=3019;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,32:67:99:1006,0,964:24,11,27,5
chr1	207042129	.	C	A	1378.76	PASS	AC=1;AF=0.5;AN=2;DP=126;FS=3.563;FractionInformativeReads=0.992;MQ=60;MQRankSum=0.594;QD=10.94;ReadPosRankSum=1.166;SOR=0.404;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,55:125:99:1407,0,1848:20,50,20,35
chr1	207075171	.	T	C	863.28	PASS	AC=1;AF=0.671;AN=2;DP=716;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:298,0,347:7,3,7,1
chr1	207086969	.	A	G	2125.93	PASS	AC=1;AF=0.688;AN=2;DP=2508;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,36:78:99:926,0,1167:30,12,26,10
chr1	207087063	.	T	A	2214.04	PASS	AC=1;AF=0.5;AN=2;DP=209;FS=1.088;FractionInformativeReads=1;MQ=60;MQRankSum=-1.919;QD=10.59;ReadPosRankSum=-1.374;SOR=0.588;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:115,94:209:99:2242,0,3013:68,47,53,41
chr1	207087435	.	C	T	3535.7	PASS	AC=1;AF=0.688;AN=2;DP=3240;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,60:88:99:1765,0,734:7,21,15,45
chr1	207091138	.	AT	A	134.76	PASS	AC=1;AF=0.5;AN=2;DP=1168;MQ=60;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-variant6-filterInvariant7-variant8-filterInvariant9-variant11-variant12-variant13-variant14-filterInvariant16-variant17-variant18-variant19-filterInvariant22-variant23-variant24-filterInvariant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:181,0,147:5,4,7,4
chr1	207104813	.	T	C	808.16	PASS	AC=1;AF=0.5;AN=2;DP=280;MQ=60;set=variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:979,0,1458:36,15,26,13
chr1	207106444	.	A	G	2153.18	PASS	AC=1;AF=0.5;AN=2;DP=947;MQ=60;set=variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:109,120:229:99:2805,0,2569:48,61,53,67
chr1	207106478	.	G	A	1789.08	PASS	AC=1;AF=0.5;AN=2;DP=720;FractionInformativeReads=1;MQ=60;set=variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:85,78:163:99:1982,0,2114:35,50,28,50
chr1	207107696	.	C	T	538.59	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=0;FractionInformativeReads=1;MQ=60;set=variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:609,0,1234:14,7,10,6
chr1	207107699	.	G	A	538.59	PASS	AC=1;AF=0.5;AN=2;DP=117;FractionInformativeReads=1;MQ=60;set=variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:606,0,1266:15,7,10,6
chr1	207108191	.	CAT	C	685.74	PASS	AC=1;AF=0.671;AN=2;DP=1697;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:687,0,819:8,18,7,15
chr1	207108228	.	A	G	237.13	PASS	AC=1;AF=0.5;AN=2;DP=85;FractionInformativeReads=1;MQ=60;set=variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:419,0,409:3,11,4,11
chr1	207110415	.	T	TC	546.43	PASS	AC=1;AF=0.5;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:796,0,855:20,13,19,11
chr1	207110888	.	G	A	1978.43	PASS	AC=1;AF=0.5;AN=2;DP=507;FractionInformativeReads=1;MQ=60;set=variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,65:127:99:1484,0,1461:32,30,32,33
chr1	207110936	.	T	C	1798.54	PASS	AC=1;AF=0.618;AN=2;DP=4250;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,62:133:99:1397,0,1969:36,35,32,30
chr1	207111257	.	G	T	708.03	PASS	AC=2;AF=0.7;AN=2;DP=3394;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2629,240,0:0,0,37,43
chr1	207111398	.	T	A	460.97	PASS	AC=1;AF=0.5;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:472,0,545:7,13,5,13
chr1	207113679	.	T	C	290.8	PASS	AC=1;AF=0.618;AN=2;DP=1105;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:347,0,329:8,4,8,5
chr1	207114037	.	A	G	821.58	PASS	AC=1;AF=0.5;AN=2;DP=158;FractionInformativeReads=1;MQ=60;set=variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:473,0,645:10,15,9,11
chr1	207119853	.	C	A	153.64	PASS	AC=1;AF=0.607;AN=2;DP=878;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:397,0,529:5,14,7,11
chr1	207131571	.	T	G	340.67	PASS	AC=1;AF=0.625;AN=2;DP=1013;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:557,0,367:8,9,11,8
chr1	207131878	.	T	C	930.86	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=0.902;FractionInformativeReads=0.986;MQ=60;MQRankSum=-2.422;QD=12.75;ReadPosRankSum=1.476;SOR=0.569;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:959,0,902:22,13,22,15
chr1	207132345	.	A	G	673.23	PASS	AC=1;AF=0.632;AN=2;DP=2598;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,35:54:99:834,0,485:8,11,13,22
chr1	207135546	.	G	A	1055.07	PASS	AC=1;AF=0.625;AN=2;DP=2767;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,29:87:99:708,0,1547:33,25,19,10
chr1	207135991	.	C	T	378.23	PASS	AC=1;AF=0.625;AN=2;DP=1346;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:579,0,657:10,13,5,14
chr1	207143422	.	A	G	346.11	PASS	AC=1;AF=0.632;AN=2;DP=1703;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:512,0,579:14,8,14,5
chr1	207192180	.	C	T	1350.51	PASS	AC=1;AF=0.528;AN=2;DP=1793;MQ=60;set=variant4-variant5-variant8-variant10-variant14-variant17-variant18-variant19-variant20-variant24-variant26-variant31-variant32-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,56:105:99:1392,0,1332:22,27,28,28
chr1	207195779	.	A	G	1803.47	PASS	AC=2;AF=0.989;AN=2;DP=4691;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3733,360,0:0,0,63,57
chr1	207206057	.	T	C	31.69	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=0;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:313,0,259:5,6,7,7
chr1	207217359	.	T	C	684.44	PASS	AC=1;AF=0.679;AN=2;DP=1220;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,25:39:99:963,0,478:0,14,0,25
chr1	207218942	.	CA	C,CAA	1036.56	PASS	AC=1,0;AF=0.489,0.011;AN=2;DP=16172;set=variant-filterInvariant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:292:99:63,54,94,81
chr1	207219456	.	A	G	4077.02	PASS	AC=1;AF=0.5;AN=2;DP=331;FS=3.568;FractionInformativeReads=1;MQ=60;MQRankSum=3.892;QD=12.32;ReadPosRankSum=1.905;SOR=0.886;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:164,167:331:99:4105,0,4160:76,88,70,97
chr1	207220800	.	C	A	4200.45	PASS	AC=1;AF=0.603;AN=2;DP=8827;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,94:225:99:2373,0,3266:63,68,41,53
chr1	207221409	.	T	C	11015.5	PASS	AC=2;AF=0.989;AN=2;DP=14304;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,290:290:99:8994,869,0:0,0,142,148
chr1	207223940	.	C	T	989.21	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=5.85;FractionInformativeReads=1;MQ=60;MQRankSum=-0.449;QD=14.99;ReadPosRankSum=-0.987;SOR=1.678;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:1017,0,856:22,11,27,6
chr1	207226134	.	A	G	124.45	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.466;QD=11.31;ReadPosRankSum=1.408;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:153,0,108:3,2,4,2
chr1	207226272	.	A	G	468.9	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.28;QD=16.75;ReadPosRankSum=-2.11;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,20:28:99:497,0,194:5,3,11,9
chr1	207227827	.	A	T	51.51	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=2.963;FractionInformativeReads=1;MQ=60;MQRankSum=-0.934;QD=3.68;ReadPosRankSum=-1.401;SOR=1.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,3:14:80:80,0,293:7,4,3,0
chr1	207235159	.	G	A	319.74	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.766;QD=21.32;ReadPosRankSum=1.355;SOR=1.112;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:348,0,225:6,0,9,0
chr1	207235204	.	T	C	544.82	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=3.303;FractionInformativeReads=1;MQ=60;MQRankSum=0.542;QD=16.02;ReadPosRankSum=-1.102;SOR=0.293;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:573,0,402:11,3,13,7
chr1	207236524	.	G	A	1158.95	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=0;FractionInformativeReads=0.989;MQ=60;MQRankSum=0.146;QD=12.74;ReadPosRankSum=-0.802;SOR=0.737;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,49:90:99:1187,0,992:23,18,28,21
chr1	207237233	.	GGT	GGGGTGTGTGTGTGTGT,GGGGTGTGTGTGTGTGTGT,GGGGTGTGTGTGTGTGTGTGT,G,GGTGTGTGTGTGTGTGT,GGGGTGTGTGTGTGTGTGTGTGTGT,GGTGT,GGTGTGT,GGGGGGTGTGTGTGTGT	2834.86	PASS	AC=0,0,0,0,0,0,1,1,0;AF=0.025,0.263,0.125,0.075,0.013,0.025,0.038,0.013,0.013;AN=2;DP=3264;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	7/8:56:99:1,5,10,40
chr1	207240818	.	AT	A	880.23	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=2.305;FractionInformativeReads=0.984;MQ=60;MQRankSum=0.87;QD=13.75;ReadPosRankSum=1.734;SOR=0.394;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,39:63:99:917,0,477:17,7,24,15
chr1	207241440	.	AGT	AGTGTGTGTGTGT,AGTGTGTGTGT,AGTGTGTGTGTGTGT,A,AGTGTGTGT,AGTGTGTGTGTGTGTGT,AGTGT	256.57	PASS	AC=0,0,0,0,0,0,1;AF=0.5,0.031,0.016,0.016,0.016,0.016,0.016;AN=2;DP=767;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/7:29:99:9,6,11,3
chr1	207241487	.	A	C	684.82	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=2.277;FractionInformativeReads=1;MQ=60;MQRankSum=1.381;QD=12.01;ReadPosRankSum=0.742;SOR=1.106;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:713,0,701:16,13,18,10
chr1	207243851	.	A	G	383.6	PASS	AC=2;AF=0.782;AN=2;DP=1229;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:999,98,0:0,0,14,19
chr1	207245045	.	T	C	778.2	PASS	AC=1;AF=0.586;AN=2;DP=1218;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,31:53:99:914,0,703:5,17,6,25
chr1	207245080	.	A	AT	237.4	PASS	AC=1;AF=0.604;AN=2;DP=517;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant34-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:220,0,222:2,8,1,9
chr1	207246004	.	A	G	412.7	PASS	AC=1;AF=0.586;AN=2;DP=1128;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:450,0,428:6,10,8,8
chr1	207247476	.	TTC	T	613.95	PASS	AC=1;AF=0.586;AN=2;DP=1081;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:759,0,541:6,7,10,9
chr1	207249597	.	CT	CTT,C	112.5	PASS	AC=0,1;AF=0.1,0.4;AN=2;DP=564;set=variant2-filterInvariant14-filterInvariant19-filterInvariant22-filterInvariant24-filterInvariant26-filterInvariant27-filterInvariant37-filterInvariant41-filterInvariant42	GT:DP:GQ:SB	0/2:50:99:18,20,6,6
chr1	207249855	.	G	A	1388.04	PASS	AC=1;AF=0.586;AN=2;DP=3113;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,61:118:99:1716,0,1643:27,30,24,37
chr1	207249974	.	A	ACTGACTGACAGACAGACTTTAGTGTCTGTGTG	784.89	PASS	AC=1;AF=0.586;AN=2;DP=3460;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,19:54:99:796,0,2358:18,17,13,6
chr1	207250300	.	G	A	4848.65	PASS	AC=1;AF=0.653;AN=2;DP=11947;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:186,180:366:99:4289,0,4440:83,103,78,102
chr1	207250456	.	C	T	1481.43	PASS	AC=1;AF=0.586;AN=2;DP=2229;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,41:85:99:1048,0,1266:21,23,19,22
chr1	207250518	.	A	T	1623.48	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=7.808;FractionInformativeReads=1;MQ=60;MQRankSum=1.551;QD=21.36;ReadPosRankSum=-0.831;SOR=1.151;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,42:76:99:1652,0,1248:15,19,26,16
chr1	207250521	.	T	C	1764.94	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=12.498;FractionInformativeReads=1;MQ=60;MQRankSum=-3.071;QD=24.51;ReadPosRankSum=-1.399;SOR=1.185;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,41:72:99:1793,0,1188:12,19,26,15
chr1	207250522	.	C	CTGAACAGA	1758.9	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=12.498;FractionInformativeReads=1;MQ=60;MQRankSum=3.616;QD=24.43;ReadPosRankSum=-1.342;SOR=1.185;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,41:72:99:1796,0,1166:12,19,26,15
chr1	207250570	.	A	G	1408.97	PASS	AC=1;AF=0.586;AN=2;DP=2937;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,42:104:99:1249,0,1915:41,21,21,21
chr1	207250631	.	A	G	2765.03	PASS	AC=1;AF=0.586;AN=2;DP=6010;MQ=60;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,80:193:99:2000,0,3063:68,45,47,33
chr1	207253031	.	C	T	1387.12	PASS	AC=1;AF=0.671;AN=2;DP=2611;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,46:76:99:1235,0,725:13,17,20,26
chr1	207253133	.	A	G	655.42	PASS	AC=1;AF=0.5;AN=2;DP=94;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:407,0,618:6,14,7,8
chr1	207253165	.	A	G	1656.89	PASS	AC=2;AF=0.703;AN=2;DP=1719;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1194,104,0:0,0,16,19
chr1	207253575	.	A	AT	7022.52	PASS	AC=2;AF=1;AN=2;DP=8224;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5417,526,0:0,0,77,98
chr1	207254047	.	GT	G	3245.9	PASS	AC=1;AF=0.615;AN=2;DP=3145;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,42:92:99:971,0,1169:21,29,18,24
chr1	207262980	.	T	G	3268.09	PASS	AC=1;AF=0.636;AN=2;DP=3647;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,52:115:99:1347,0,1624:23,40,20,32
chr1	207263829	.	A	G	2177.9	PASS	AC=1;AF=0.633;AN=2;DP=2338;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,37:87:99:827,0,1249:23,27,17,20
chr1	207268779	.	A	G	3267.57	PASS	AC=1;AF=0.613;AN=2;DP=2252;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:968,0,835:5,22,7,24
chr1	207269919	.	C	T	2995.17	PASS	AC=1;AF=0.654;AN=2;DP=1526;MQ=60;set=variant8-variant10-variant13-variant18-variant19-variant20-variant27-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,63:121:99:1391,0,1560:26,32,28,35
chr1	207288244	.	A	G	91.68	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.684;QD=11.46;ReadPosRankSum=0.322;SOR=0.582;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:71:120,0,71:1,2,2,3
chr1	207288897	.	T	C	1256.91	PASS	AC=1;AF=0.711;AN=2;DP=1401;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,30:46:99:882,0,404:5,11,7,23
chr1	207297466	.	A	G	561.88	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=1.15;FractionInformativeReads=1;MQ=60;MQRankSum=-1.108;QD=11.95;ReadPosRankSum=-2.205;SOR=1.036;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:590,0,877:13,14,8,12
chr1	207297484	.	G	C	692.6	PASS	AC=2;AF=0.673;AN=2;DP=1101;MQ=60;set=variant-variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant24-variant25-variant26-variant29-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1670,144,0:0,0,21,27
chr1	207297680	.	T	C	2071.17	PASS	AC=2;AF=0.857;AN=2;DP=3864;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2628,264,0:0,0,41,47
chr1	207304900	.	T	C	330.64	PASS	AC=1;AF=0.593;AN=2;DP=1243;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant25-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:699,0,711:17,9,14,10
chr1	207305069	.	A	C	576.54	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.234;QD=9.15;ReadPosRankSum=1.493;SOR=0.783;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,24:63:99:605,0,1028:14,25,8,16
chr1	207317580	.	C	T	339.98	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.705;QD=21.25;ReadPosRankSum=0.271;SOR=1.244;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:368,0,226:0,6,0,10
chr1	207510289	.	T	C	1804.7	PASS	AC=2;AF=1;AN=2;DP=3402;FS=0;MQ=60;MQRankSum=-0.763;ReadPosRankSum=0.47;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2686,234,0:0,0,23,61
chr1	207520788	.	G	A	442.16	PASS	AC=1;AF=0.652;AN=2;DP=355;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant12-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:261,0,189:5,1,7,0
chr1	207533458	.	G	A	5004.14	PASS	AC=1;AF=0.5;AN=2;DP=446;FS=1.731;FractionInformativeReads=1;MQ=60;MQRankSum=0.815;QD=11.22;ReadPosRankSum=0.449;SOR=0.812;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:226,220:446:99:5032,0,5489:106,120,97,123
chr1	207533923	.	C	A	3865.44	PASS	AC=1;AF=0.5;AN=2;DP=322;FS=0;FractionInformativeReads=0.997;MQ=60;MQRankSum=4.066;QD=12;ReadPosRankSum=0.947;SOR=0.704;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:160,161:321:99:3894,0,4019:92,68,93,68
chr1	207643949	.	G	A	148.54	PASS	AC=1;AF=0.727;AN=2;DP=392;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:357,0,304:7,2,8,5
chr1	207646322	.	G	A	1253	PASS	AC=1;AF=0.596;AN=2;DP=2484;MQ=60;set=variant2-variant6-variant7-variant8-variant11-variant12-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,57:103:99:1477,0,1283:19,27,25,32
chr1	207653178	.	C	G	1114.45	PASS	AC=1;AF=0.672;AN=2;DP=1223;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:531,0,501:13,4,11,6
chr1	207653395	.	C	A	3076.73	PASS	AC=2;AF=0.826;AN=2;DP=3613;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,96:97:99:2777,279,0:0,1,44,52
chr1	207662912	.	T	C	11102.8	PASS	AC=1;AF=0.909;AN=2;DP=12807;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:163,146:309:99:3573,0,4080:95,68,80,66
chr1	207663256	.	G	GT,GTT	971.36	PASS	AC=1,0;AF=0.886,0.011;AN=2;DP=1813;MQ=60;set=Intersection	GT:DP:GQ:SB	0/1:27:99:3,12,1,11
chr1	207679307	.	A	G	5772.17	PASS	AC=2;AF=0.826;AN=2;DP=7129;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,152:154:99:4876,411,0:1,1,98,54
chr1	207679455	.	CCT	C	3506.24	PASS	AC=1;AF=0.5;AN=2;DP=203;FS=1.113;FractionInformativeReads=1;MQ=60;MQRankSum=-1.156;QD=17.27;ReadPosRankSum=0.37;SOR=0.579;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:109,94:203:99:3544,0,4811:42,67,39,55
chr1	207685096	.	G	A	246.46	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.288;QD=13.69;ReadPosRankSum=1.91;SOR=1.445;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:275,0,353:1,9,0,8
chr1	207737459	.	G	A	287.55	PASS	AC=1;AF=0.588;AN=2;DP=112;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant8-variant13-variant14-variant16-variant19-variant24-variant25-variant27-variant29-variant31-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:215,0,235:6,0,6,0
chr1	207741305	.	T	C	367.66	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=363;FS=0.521;FractionInformativeReads=1;MQ=50.47;MQRankSum=-3.34;QD=1.01;ReadPosRankSum=1.151;SOR=0.741;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:305,58:363:99:396,0,7740:151,154,28,30
chr1	207748847	.	G	A	1614.11	PASS	AC=1;AF=0.5;AN=2;DP=157;FS=2.904;FractionInformativeReads=1;MQ=59.94;MQRankSum=0.354;QD=10.28;ReadPosRankSum=-0.343;SOR=0.498;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:84,73:157:99:1642,0,2212:55,29,44,29
chr1	207753345	.	C	T	487.83	PASS	AC=1;AF=0.667;AN=2;DP=706;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:487,0,294:9,0,13,1
chr1	207757936	.	A	G	819.82	PASS	AC=1;AF=0.542;AN=2;DP=902;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant25-variant27-variant29-variant31-variant33-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:751,0,631:17,3,20,2
chr1	207758232	.	A	G	2365.95	PASS	AC=1;AF=0.542;AN=2;DP=4571;set=variant-variant2-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant25-variant27-variant29-variant31-variant33-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,115:226:99:2970,0,2877:44,67,40,75
chr1	207760675	.	A	C	652.22	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.471;QD=11.25;ReadPosRankSum=-2.952;SOR=0.682;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,25:58:99:680,0,920:25,8,19,6
chr1	207761764	.	C	T	76.45	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.573;QD=8.49;ReadPosRankSum=0.248;SOR=0.283;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:105,0,239:6,0,3,0
chr1	207782889	.	A	G	1461.87	PASS	AC=1;AF=0.5;AN=2;DP=231;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:62,64:126:99:1490,0,1500:30,32,30,34
chr1	207782916	.	A	T	3033.78	PASS	AC=2;AF=0.989;AN=2;DP=5205;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3261,341,0:0,0,55,59
chr1	207782931	.	A	G	2855.21	PASS	AC=1;AF=0.542;AN=2;DP=2589;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant25-variant27-variant29-variant31-variant33-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,52:102:99:1216,0,1222:23,27,22,30
chr1	207784968	.	A	G	4058.84	PASS	AC=1;AF=0.802;AN=2;DP=4787;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,41:86:99:1007,0,1235:20,25,23,18
chr1	207791535	.	G	A	1010.41	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=7.754;FractionInformativeReads=1;MQ=60;MQRankSum=-0.226;QD=12.63;ReadPosRankSum=-1.932;SOR=1.565;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,38:80:99:1039,0,1133:19,23,11,27
chr1	207795320	.	A	G	2790.75	PASS	AC=1;AF=0.814;AN=2;DP=3931;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,61:113:99:1448,0,1222:29,23,33,28
chr1	207812663	.	AG	A	1694.44	PASS	AC=1;AF=0.5;AN=2;DP=97;FS=0;FractionInformativeReads=0.99;MQ=60;MQRankSum=-1.468;QD=17.47;ReadPosRankSum=-1.079;SOR=0.688;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,51:96:99:1732,0,1525:23,22,26,25
chr1	207813726	.	T	C	40.97	PASS	AC=2;AF=0.75;AN=2;DP=118;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant19-variant23-variant24-variant26-variant27-variant28-variant32-variant35-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:193,21,0:0,0,4,3
chr1	207818719	.	G	A	2619.11	PASS	AC=1;AF=0.6;AN=2;DP=5461;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant32-variant34-variant36-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:100,99:199:99:2465,0,2871:35,65,41,58
chr1	207850652	.	CAAAAAAA	CAA,C,CA,CAAA	118.44	PASS	AC=0,0,1,0;AF=0.071,0.179,0.25,0.036;AN=2;DP=204;set=variant5-variant6-variant7-variant8-variant10-variant12-variant16-variant18-variant23-variant24-variant34-variant36-variant41-variant42	GT:DP:GQ:SB	0/3:17:99:3,6,8,0
chr1	207851611	.	A	G	1860.34	PASS	AC=1;AF=0.606;AN=2;DP=5221;set=variant2-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,91:164:99:2203,0,1853:35,38,43,48
chr1	207851760	.	G	A	397.91	PASS	AC=1;AF=0.596;AN=2;DP=838;MQ=60;set=variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:489,0,578:2,16,7,13
chr1	207857158	.	T	C	1485.58	PASS	AC=1;AF=0.6;AN=2;DP=2470;set=variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant32-variant34-variant36-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,52:103:99:1256,0,1302:33,18,34,18
chr1	207870975	.	G	A	2169.6	PASS	AC=1;AF=0.5;AN=2;DP=184;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.347;QD=11.79;ReadPosRankSum=-0.991;SOR=0.676;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,85:184:99:2198,0,2498:54,45,46,39
chr1	207881485	.	TA	T	2664.26	PASS	AC=2;AF=0.694;AN=2;DP=5682;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:6082,409,0:0,0,67,68
chr1	207881489	.	T	G	2719.32	PASS	AC=2;AF=0.694;AN=2;DP=5635;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:6161,415,0:0,0,67,69
chr1	207881491	.	C	A	2722.35	PASS	AC=2;AF=0.694;AN=2;DP=5633;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:6136,412,0:0,0,67,69
chr1	207881557	.	A	G	1424.17	PASS	AC=2;AF=0.694;AN=2;DP=4056;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3106,309,0:0,0,39,64
chr1	207888739	.	G	T	1542.91	PASS	AC=2;AF=0.686;AN=2;DP=3752;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3251,305,0:0,0,42,60
chr1	207941191	.	G	T	915.7	PASS	AC=2;AF=0.826;AN=2;DP=956;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:464,45,0:0,0,4,11
chr1	207959122	.	CTTTT	C,CT,CTTT	763.59	PASS	AC=1,0,1;AF=0.511,0.375,0.114;AN=2;DP=1566;FS=0;MQ=60;set=Intersection	GT:DP:GQ:SB	1/3:31:99:0,0,11,20
chr1	207959136	.	T	TAAA,TAA	763.34	PASS	AC=0,1;AF=0.405,0.5;AN=2;DP=1236;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant2-variant30-variant31-variant32-variant34-variant35-variant5-variant38-variant33-variant40-variant36-variant42-variant39-variant43-variant41-variant44	GT:DP:GQ:SB	0/2:34:99:6,11,6,11
chr1	208050301	.	A	G	826.94	PASS	AC=1;AF=0.5;AN=2;DP=501;FractionInformativeReads=1;MQ=60;set=variant2-variant24-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,42:97:99:983,0,1206:26,29,20,22
chr1	208050360	.	G	A	655.31	PASS	AC=1;AF=0.5;AN=2;DP=369;FractionInformativeReads=1;MQ=60;set=variant2-variant24-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,32:70:99:891,0,968:15,23,11,21
chr1	208060009	.	C	T	2258.43	PASS	AC=1;AF=0.577;AN=2;DP=2436;MQ=60;set=variant2-variant8-variant9-variant11-variant17-variant18-variant19-variant24-variant27-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,97:171:99:2352,0,1850:33,41,43,54
chr1	208062260	.	T	C	906.75	PASS	AC=2;AF=0.716;AN=2;DP=2033;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1824,177,0:0,0,21,38
chr1	208063466	.	A	T	852.56	PASS	AC=2;AF=0.705;AN=2;DP=2583;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2524,231,0:0,0,25,52
chr1	208063808	.	G	A	173.01	PASS	AC=1;AF=0.607;AN=2;DP=1232;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,16:51:99:399,0,790:15,20,8,8
chr1	208070646	.	C	T	90.18	PASS	AC=2;AF=0.571;AN=2;DP=97;FractionInformativeReads=1;MQ=60;set=variant2-variant24-variant27-variant29-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:421,39,0:0,0,10,3
chr1	208070983	.	C	A	730.23	PASS	AC=1;AF=0.5;AN=2;DP=410;FractionInformativeReads=1;MQ=60;set=variant2-variant24-variant29-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,38:80:99:856,0,1140:20,22,18,20
chr1	208072626	.	A	C	217.42	PASS	AC=2;AF=0.636;AN=2;DP=286;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant17-variant18-variant24-variant27-variant29-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:662,51,0:0,0,2,15
chr1	208195516	.	A	C	427.45	PASS	AC=2;AF=0.988;AN=2;DP=358;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.747;ReadPosRankSum=0.747;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:186,18,0:0,0,4,2
chr1	208195981	.	C	T	203.17	PASS	AC=1;AF=0.724;AN=2;DP=1765;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:440,0,558:12,10,11,8
chr1	208196081	.	T	C	777.75	PASS	AC=2;AF=0.989;AN=2;DP=2001;MQ=60;MQRankSum=-1.275;ReadPosRankSum=-0.481;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:963,96,0:0,0,16,16
chr1	208197882	.	G	C	2425.26	PASS	AC=2;AF=1;AN=2;DP=4057;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2929,282,0:0,0,50,44
chr1	208198161	.	C	T	138.93	PASS	AC=1;AF=0.711;AN=2;DP=1762;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:641,0,621:9,10,9,12
chr1	208199100	.	T	A	414.32	PASS	AC=2;AF=0.724;AN=2;DP=2926;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2216,212,0:0,0,37,34
chr1	208199993	.	T	TTC	57.28	PASS	AC=1;AF=0.5;AN=2;DP=825;set=filterInvariant2-variant11-filterInvariant16-filterInvariant19-variant20-variant23-filterInvariant24-variant26-filterInvariant32-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,14:52:99:166,0,945:23,15,7,7
chr1	208199997	.	C	CT,CTTT,CTT	107.64	PASS	AC=1,0,0;AF=0.447,0.026,0.026;AN=2;DP=1339;set=filterInvariant-variant3-variant4-variant5-filterInvariant7-variant8-variant9-variant15-filterInvariant16-variant18-variant22-variant25-filterInvariant26-variant27-variant28-variant29-filterInvariant31-filterInvariant32-filterInvariant41	GT:DP:GQ:SB	0/1:62:99:26,18,9,9
chr1	208200127	.	T	A	5012.99	PASS	AC=2;AF=1;AN=2;DP=5475;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3687,379,0:0,0,57,70
chr1	208207045	.	T	C	103.54	PASS	AC=2;AF=1;AN=2;DP=216;FS=0;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:72,6,0:0,0,0,2
chr1	208207839	.	G	A	445.23	PASS	AC=2;AF=0.737;AN=2;DP=2862;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1986,189,0:0,0,36,27
chr1	208207949	.	A	G	960.48	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=1.704;FractionInformativeReads=0.989;MQ=60;MQRankSum=0.724;QD=10.55;ReadPosRankSum=-1.864;SOR=0.906;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,42:90:99:989,0,1149:23,25,18,24
chr1	208208124	.	C	A	160.2	PASS	AC=2;AF=0.743;AN=2;DP=407;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:325,24,0:0,0,0,8
chr1	208211887	.	T	C	506.52	PASS	AC=2;AF=0.977;AN=2;DP=1357;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1047,84,0:0,0,9,19
chr1	208213125	.	A	G	1985.41	PASS	AC=2;AF=1;AN=2;DP=5111;FS=0;MQ=60;MQRankSum=1.254;ReadPosRankSum=1.692;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2947,297,0:0,0,46,53
chr1	208219164	.	A	C	1027.16	PASS	AC=2;AF=0.86;AN=2;DP=2027;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1980,156,0:0,0,44,8
chr1	208219545	.	T	C	392.09	PASS	AC=1;AF=0.5;AN=2;DP=60;FractionInformativeReads=1;MQ=60;set=variant4-variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:394,0,226:2,7,4,9
chr1	208224955	.	G	C	118.69	PASS	AC=1;AF=0.689;AN=2;DP=654;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,15:22:99:403,0,161:2,5,5,10
chr1	208224957	.	C	T	414.54	PASS	AC=2;AF=1;AN=2;DP=720;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:66:858,66,0:0,0,6,15
chr1	208234236	.	G	A	1311.53	PASS	AC=1;AF=0.5;AN=2;DP=106;FS=3.838;FractionInformativeReads=1;MQ=60;MQRankSum=-1.246;QD=12.37;ReadPosRankSum=-1.783;SOR=1.136;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,51:106:99:1340,0,1380:21,34,15,36
chr1	208252489	.	T	C	1690.36	PASS	AC=1;AF=0.686;AN=2;DP=3655;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,42:92:99:938,0,1202:26,24,21,21
chr1	208255877	.	T	C	1130.69	PASS	AC=1;AF=0.797;AN=2;DP=4054;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,59:111:99:1509,0,1402:17,35,25,34
chr1	208272388	.	G	A	259.36	PASS	AC=1;AF=0.5;AN=2;DP=60;FractionInformativeReads=1;MQ=60;set=variant2-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:285,0,402:3,10,1,8
chr1	208276399	.	C	CCTCT	3892.76	PASS	AC=2;AF=1;AN=2;DP=3778;FS=0;MQ=60;MQRankSum=-1.123;ReadPosRankSum=-0.961;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:3580,240,0:0,0,50,30
chr1	208390086	.	G	C	1275.92	PASS	AC=1;AF=0.63;AN=2;DP=4134;MQ=60;set=variant2-variant3-variant7-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant29-variant30-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,59:130:99:1339,0,1941:42,29,33,26
chr1	208390469	.	C	T	1834.23	PASS	AC=1;AF=0.528;AN=2;DP=5489;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant20-variant22-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:156,137:293:99:3370,0,4318:77,79,69,68
chr1	208391254	.	C	T	1870.51	PASS	AC=1;AF=0.63;AN=2;DP=3084;MQ=60;set=variant2-variant3-variant7-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant29-variant30-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,65:149:99:1612,0,2208:31,53,25,40
chr1	208417564	.	A	G	606.72	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=2.621;FractionInformativeReads=1;MQ=60;MQRankSum=-2.309;QD=12.91;ReadPosRankSum=2.011;SOR=1.232;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:635,0,650:10,14,7,16
chr1	208417649	.	TGGCGGC	T	772.06	PASS	AC=2;AF=0.989;AN=2;DP=1523;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:551,39,0:0,0,4,9
chr1	209778773	.	C	T	402.37	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=1.139;FractionInformativeReads=1;MQ=60;MQRankSum=-0.205;QD=7.74;ReadPosRankSum=-4.289;SOR=0.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,21:52:99:431,0,816:21,10,13,8
chr1	209779805	.	G	A	1233.33	PASS	AC=1;AF=0.5;AN=2;DP=734;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant19-variant21-variant22-variant27-variant28-variant34-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:764,0,642:5,17,8,20
chr1	209781417	.	TACAC	T,TACACAC,TAC,TACACACAC	277.97	PASS	AC=0,0,0,1;AF=0.455,0.136,0.015,0.015;AN=2;DP=658;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:15:99:2,7,2,4
chr1	209782343	.	A	G	2134.61	PASS	AC=1;AF=0.569;AN=2;DP=2345;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,46:100:99:1143,0,1334:30,24,27,19
chr1	209782532	.	A	G	469.07	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=5.902;FractionInformativeReads=1;MQ=60;MQRankSum=-0.277;QD=13.8;ReadPosRankSum=-0.659;SOR=1.863;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:497,0,591:6,13,2,13
chr1	209784663	.	A	C	46.72	PASS	AC=2;AF=0.703;AN=2;DP=761;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:987,72,0:0,0,23,1
chr1	209784927	.	G	T	781.3	PASS	AC=1;AF=0.58;AN=2;DP=2103;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant16-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant33-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,47:76:99:1256,0,709:11,18,16,31
chr1	209785011	.	G	C	355.7	PASS	AC=1;AF=0.571;AN=2;DP=952;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant16-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,24:39:99:766,0,501:4,11,9,15
chr1	209785206	.	G	A	1994.4	PASS	AC=1;AF=0.55;AN=2;DP=1450;set=variant5-variant9-variant12-variant19-variant23-variant24-variant28-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,65:140:99:1705,0,1676:41,34,41,24
chr1	209785957	.	T	G	406.24	PASS	AC=2;AF=0.703;AN=2;DP=1378;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1572,138,0:0,0,35,11
chr1	209786078	.	G	A	1315.01	PASS	AC=2;AF=0.689;AN=2;DP=5313;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3740,374,0:0,0,69,56
chr1	209786883	.	C	T	297.05	PASS	AC=1;AF=0.583;AN=2;DP=909;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant16-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant33-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,16:45:99:491,0,748:10,19,3,13
chr1	209788213	.	T	C	242.87	PASS	AC=2;AF=0.729;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:178,15,0:0,0,4,1
chr1	209788514	.	G	A	3037.72	PASS	AC=1;AF=0.559;AN=2;DP=1519;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant9-variant14-variant15-variant23-variant26-variant28-variant29-variant33-variant34-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,35:70:99:890,0,943:15,20,15,20
chr1	209788703	.	T	C	353.07	PASS	AC=1;AF=0.569;AN=2;DP=2153;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,41:65:99:1035,0,512:9,15,19,22
chr1	209792015	.	A	AC	2956.09	PASS	AC=2;AF=0.966;AN=2;DP=5500;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4924,397,0:0,0,55,77
chr1	209798824	.	A	G	409.56	PASS	AC=1;AF=0.575;AN=2;DP=1124;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant16-variant20-variant25-variant27-variant33-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,19:47:99:495,0,726:13,15,13,6
chr1	209799253	.	A	G	4514.61	PASS	AC=1;AF=0.833;AN=2;DP=5487;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,58:102:99:1391,0,1122:24,20,28,30
chr1	209799303	.	G	A	1095.83	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=0;FractionInformativeReads=0.989;MQ=60;MQRankSum=-0.097;QD=12.04;ReadPosRankSum=-2.52;SOR=0.69;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,47:90:99:1124,0,1042:21,22,23,24
chr1	209800976	.	C	T	2136.64	PASS	AC=1;AF=0.6;AN=2;DP=883;MQ=60;set=variant9-variant12-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:98,61:159:99:1265,0,2588:39,59,21,40
chr1	209804095	.	G	A	1464.18	PASS	AC=1;AF=0.909;AN=2;DP=2463;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:571,0,725:8,18,6,15
chr1	209805895	.	C	G	363.24	PASS	AC=1;AF=0.6;AN=2;DP=277;MQ=60;set=variant9-variant12-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:805,0,841:22,6,21,10
chr1	209811886	.	T	G	1415.23	PASS	AC=1;AF=0.725;AN=2;DP=4171;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,56:104:99:1343,0,1194:27,21,30,26
chr1	209823354	.	G	A	310.98	PASS	AC=1;AF=0.526;AN=2;DP=1534;MQ=60;set=variant-variant2-variant5-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant20-variant25-variant26-variant27-variant33-variant34-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,46:84:99:1143,0,998:14,24,20,26
chr1	209824099	.	G	C	56.69	PASS	AC=1;AF=0.528;AN=2;DP=229;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant20-variant25-variant26-variant27-variant33-variant34-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:243,0,435:11,2,6,1
chr1	209848696	.	G	C	464.08	PASS	AC=2;AF=0.977;AN=2;DP=1161;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:669,60,0:0,0,7,13
chr1	209849002	.	T	C	1070.58	PASS	AC=1;AF=0.782;AN=2;DP=6004;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,71:150:99:1579,0,2053:46,33,38,33
chr1	209849399	.	AG	A	1022.88	PASS	AC=1;AF=0.782;AN=2;DP=3552;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,39:100:99:1265,0,2130:33,28,15,24
chr1	209849406	.	T	G	3029.64	PASS	AC=2;AF=0.977;AN=2;DP=3978;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3510,285,0:0,0,46,48
chr1	209849714	.	TA	T	1022.09	PASS	AC=2;AF=0.977;AN=2;DP=1925;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1201,117,0:0,0,18,21
chr1	209879846	.	T	G	439.33	PASS	AC=1;AF=0.5;AN=2;DP=48;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:597,0,287:8,2,15,0
chr1	209880508	.	GA	G	1543.15	PASS	AC=1;AF=0.559;AN=2;DP=1067;MQ=60;set=variant6-variant8-variant10-variant13-variant14-variant19-variant20-variant23-variant24-variant31-variant32-variant33-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:454,0,490:8,14,9,12
chr1	209929299	.	G	A	61.77	PASS	AC=1;AF=0.851;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:114,0,119:3,0,3,0
chr1	209931799	.	C	T	193.6	PASS	AC=2;AF=0.614;AN=2;DP=226;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant10-variant13-variant14-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:283,27,0:0,0,4,5
chr1	209932121	.	C	T	262.28	PASS	AC=2;AF=0.563;AN=2;DP=200;MQ=60;set=variant3-variant10-variant17-variant26-variant28-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:427,42,0:0,0,6,8
chr1	209932297	.	T	A	112.92	PASS	AC=2;AF=0.591;AN=2;DP=308;MQ=60;set=variant3-variant6-variant8-variant10-variant13-variant14-variant17-variant19-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:403,36,0:0,0,7,5
chr1	209933331	.	A	G	1280.78	PASS	AC=2;AF=0.587;AN=2;DP=1839;MQ=60;set=variant3-variant6-variant8-variant10-variant13-variant14-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1971,170,0:0,0,31,26
chr1	209933540	.	A	G	2217.85	PASS	AC=2;AF=0.587;AN=2;DP=3058;MQ=60;set=variant3-variant6-variant8-variant10-variant13-variant14-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3894,384,0:0,0,64,64
chr1	209933757	.	G	C	791.38	PASS	AC=2;AF=0.587;AN=2;DP=1571;MQ=60;set=variant3-variant6-variant8-variant10-variant13-variant14-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2266,198,0:0,0,26,40
chr1	209935778	.	A	G	1676.39	PASS	AC=2;AF=0.587;AN=2;DP=2731;MQ=60;set=variant3-variant6-variant8-variant10-variant13-variant14-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:2933,305,0:0,0,56,46
chr1	209936466	.	A	G	2025.09	PASS	AC=2;AF=0.587;AN=2;DP=2209;MQ=60;set=variant3-variant6-variant8-variant10-variant13-variant14-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2202,215,0:0,0,36,36
chr1	209936571	.	A	G	1425.32	PASS	AC=2;AF=0.609;AN=2;DP=1315;MQ=60;set=variant3-variant6-variant8-variant10-variant13-variant14-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1417,138,0:0,0,21,25
chr1	209936631	.	G	A	633.18	PASS	AC=2;AF=0.565;AN=2;DP=633;MQ=60;set=variant3-variant6-variant8-variant10-variant13-variant14-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:80:849,80,0:0,0,12,15
chr1	209936673	.	C	G	523.18	PASS	AC=2;AF=0.587;AN=2;DP=484;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant10-variant13-variant14-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:918,69,0:0,0,14,9
chr1	209936914	.	C	T	1822.47	PASS	AC=2;AF=0.587;AN=2;DP=3139;MQ=60;set=variant3-variant6-variant8-variant10-variant13-variant14-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3099,305,0:0,0,49,53
chr1	209936964	.	T	TCA	2092.07	PASS	AC=2;AF=0.587;AN=2;DP=2250;MQ=60;set=variant3-variant6-variant8-variant10-variant13-variant14-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3105,208,0:0,0,29,40
chr1	209948711	.	A	C	2272.19	PASS	AC=1;AF=0.614;AN=2;DP=3383;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,77:135:99:1907,0,1486:32,26,42,35
chr1	209950681	.	T	C	1061.93	PASS	AC=1;AF=0.727;AN=2;DP=1353;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:473,0,760:12,15,10,8
chr1	209950760	.	C	G	1307.48	PASS	AC=2;AF=0.915;AN=2;DP=2969;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2484,225,0:0,0,39,36
chr1	209950848	.	G	A	991.26	PASS	AC=1;AF=0.605;AN=2;DP=1353;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,37:76:99:771,0,957:21,18,17,20
chr1	209951602	.	G	A	565.68	PASS	AC=1;AF=0.5;AN=2;DP=72;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:573,0,406:2,11,4,15
chr1	209952918	.	T	C	2821.42	PASS	AC=1;AF=0.5;AN=2;DP=229;FS=1.605;FractionInformativeReads=1;MQ=60;MQRankSum=1.578;QD=12.32;ReadPosRankSum=-0.179;SOR=0.59;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:110,119:229:99:2850,0,2741:46,64,53,66
chr1	209956542	.	C	A	1479.65	PASS	AC=1;AF=0.614;AN=2;DP=2189;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,49:107:99:1161,0,1482:33,25,27,22
chr1	209959614	.	G	T	543.47	PASS	AC=1;AF=0.619;AN=2;DP=390;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant26-variant28-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:219,0,178:2,5,4,6
chr1	209959872	.	G	A	201.22	PASS	AC=2;AF=0.934;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:248,27,0:0,0,3,6
chr1	209960922	.	A	C	761.44	PASS	AC=1;AF=0.648;AN=2;DP=859;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:456,0,582:8,7,8,8
chr1	209960925	.	T	C	230.41	PASS	AC=1;AF=0.619;AN=2;DP=666;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant23-variant26-variant28-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:373,0,648:8,9,8,7
chr1	209961023	.	T	A	506.47	PASS	AC=1;AF=0.614;AN=2;DP=683;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:260,0,318:3,9,4,4
chr1	209961314	.	T	C	550.29	PASS	AC=1;AF=0.611;AN=2;DP=649;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:536,0,538:11,10,8,13
chr1	209961561	.	G	A	697.11	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=2.198;FractionInformativeReads=1;MQ=60;MQRankSum=1.155;QD=12.45;ReadPosRankSum=1.942;SOR=1.002;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:725,0,718:15,13,17,11
chr1	209963803	.	G	A	1682.94	PASS	AC=1;AF=0.614;AN=2;DP=1805;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,43:78:99:1069,0,831:21,14,28,15
chr1	209965587	.	G	C,A	1695.01	PASS	AC=1,0;AF=0.629,0.016;AN=2;DP=3801;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:96:99:33,23,25,15
chr1	209968319	.	A	C	637.11	PASS	AC=1;AF=0.733;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:186,0,280:7,2,5,2
chr1	209968684	.	C	A	2514.88	PASS	AC=1;AF=0.65;AN=2;DP=4482;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,70:122:99:1618,0,1390:18,34,30,40
chr1	209969902	.	G	C	256.35	PASS	AC=1;AF=0.65;AN=2;DP=829;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:442,0,475:4,13,4,11
chr1	209974528	.	CAAAA	CAA,CAAAAA,CA,CAAA,C,CAAAAAAA	120.24	PASS	AC=0,0,0,0,0,1;AF=0.125,0.141,0.016,0.188,0.016,0.016;AN=2;DP=1581;set=variant-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant31-variant32-variant33-filterInvariant34-filterInvariant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/6:48:99:20,11,9,8
chr1	209975386	.	A	G	951.79	PASS	AC=1;AF=0.648;AN=2;DP=993;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:220,0,405:8,10,3,4
chr1	210001233	.	C	T	280.3	PASS	AC=2;AF=0.893;AN=2;DP=532;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:562,42,0:0,0,12,2
chr1	210001586	.	A	G	2547.29	PASS	AC=1;AF=0.806;AN=2;DP=2732;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:704,0,876:3,23,7,17
chr1	210003402	.	T	C	2230.48	PASS	AC=1;AF=0.875;AN=2;DP=2486;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:629,0,672:18,12,17,9
chr1	210003489	.	A	G	1157.43	PASS	AC=1;AF=0.5;AN=2;DP=390;MQ=60;set=variant8-variant9-variant14-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,33:72:99:759,0,817:19,20,14,19
chr1	210004199	.	C	G	3113.15	PASS	AC=1;AF=0.875;AN=2;DP=4499;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,56:144:99:1371,0,2399:53,35,35,21
chr1	210004332	.	G	A	2487.93	PASS	AC=1;AF=0.6;AN=2;DP=3305;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,67:168:99:1541,0,2763:49,52,30,37
chr1	210006603	.	C	T	5033.01	PASS	AC=1;AF=0.875;AN=2;DP=5600;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,73:146:99:1648,0,1750:44,29,44,29
chr1	210008367	.	C	G	1595.66	PASS	AC=1;AF=0.875;AN=2;DP=2335;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,28:65:99:646,0,981:25,12,17,11
chr1	210008554	.	A	C	1580.93	PASS	AC=1;AF=0.5;AN=2;DP=618;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant14-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,55:126:99:1273,0,1813:34,37,23,32
chr1	210008673	.	T	G	874.71	PASS	AC=1;AF=0.875;AN=2;DP=991;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:474,0,278:2,8,2,12
chr1	210012102	.	A	G	2630.04	PASS	AC=1;AF=0.875;AN=2;DP=3097;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,45:76:99:1288,0,925:23,8,32,13
chr1	210015568	.	GCT	G	2874.4	PASS	AC=2;AF=0.893;AN=2;DP=2748;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2651,181,0:0,0,40,20
chr1	210016709	.	A	T	2749.31	PASS	AC=1;AF=0.6;AN=2;DP=3092;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,83:158:99:2273,0,2019:36,39,38,45
chr1	210017083	.	G	A	1317.77	PASS	AC=1;AF=0.625;AN=2;DP=1408;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,27:63:99:733,0,967:16,20,13,14
chr1	210017335	.	CAAAT	C	1105.41	PASS	AC=1;AF=0.6;AN=2;DP=1011;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:694,0,1350:12,9,10,9
chr1	210024445	.	G	C	297.12	PASS	AC=1;AF=0.6;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant14-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:102,0,213:7,0,3,0
chr1	210025751	.	G	A	4578.83	PASS	AC=1;AF=0.625;AN=2;DP=4550;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,111:225:99:2974,0,3276:47,67,48,63
chr1	210027026	.	G	A	331.77	PASS	AC=1;AF=0.694;AN=2;DP=816;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:162,0,354:9,7,4,3
chr1	210027654	.	T	C	2397.27	PASS	AC=1;AF=0.625;AN=2;DP=3070;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,65:125:99:1480,0,1382:26,34,29,36
chr1	210027669	.	TGA	T	2715.31	PASS	AC=1;AF=0.6;AN=2;DP=2693;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,48:96:99:1714,0,1663:19,29,20,28
chr1	210027721	.	C	T	1875.39	PASS	AC=1;AF=0.625;AN=2;DP=1523;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,37:73:99:1462,0,1637:13,23,13,24
chr1	210027723	.	T	A	1875.39	PASS	AC=1;AF=0.6;AN=2;DP=1497;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,37:73:99:1462,0,1637:13,23,14,23
chr1	210027936	.	T	C	652.69	PASS	AC=1;AF=0.6;AN=2;DP=808;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:461,0,750:15,9,8,6
chr1	210028454	.	G	T	996.72	PASS	AC=2;AF=0.71;AN=2;DP=3658;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:3866,385,0:0,0,58,71
chr1	210029430	.	G	C	1205.99	PASS	AC=1;AF=0.605;AN=2;DP=1407;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,30:70:99:756,0,1074:19,21,12,18
chr1	210029877	.	A	G	649.41	PASS	AC=1;AF=0.5;AN=2;DP=361;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant17-variant26-variant28-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:811,0,842:16,15,17,14
chr1	210030197	.	C	T	276.57	PASS	AC=2;AF=0.63;AN=2;DP=675;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1518,138,0:0,0,17,29
chr1	210030639	.	T	C	2991.21	PASS	AC=1;AF=0.605;AN=2;DP=2886;set=variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,70:151:99:1901,0,2092:44,37,45,25
chr1	210030730	.	C	A	5038.44	PASS	AC=2;AF=0.636;AN=2;DP=6426;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant26-variant28-variant30-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,265:269:99:8498,706,0:2,2,154,111
chr1	210111733	.	G	A	1263.21	PASS	AC=1;AF=0.676;AN=2;DP=3932;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,46:104:99:1185,0,1637:18,40,10,36
chr1	210125880	.	T	C	186.67	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:192,0,170:4,3,5,2
chr1	210334665	.	GTTAATT	G	1135.73	PASS	AC=1;AF=0.583;AN=2;DP=1428;set=variant2-variant6-variant7-variant10-variant11-variant16-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,28:58:99:1053,0,1986:4,26,6,22
chr1	210335028	.	T	C	1853.9	PASS	AC=1;AF=0.583;AN=2;DP=2679;MQ=60;set=variant2-variant6-variant7-variant10-variant11-variant16-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,92:162:99:2542,0,1997:32,38,37,55
chr1	210335066	.	G	A	1712.61	PASS	AC=1;AF=0.583;AN=2;DP=2416;MQ=60;set=variant2-variant6-variant7-variant10-variant11-variant16-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:66,80:146:99:2207,0,1761:36,30,40,40
chr1	210337043	.	A	G	3081.29	PASS	AC=2;AF=0.845;AN=2;DP=11327;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,251:253:99:8092,709,0:1,1,128,123
chr1	210407240	.	G	A	495.41	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=2.534;FractionInformativeReads=1;MQ=60;MQRankSum=-0.498;QD=9.53;ReadPosRankSum=-2.774;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,20:52:99:524,0,980:13,19,6,14
chr1	210407340	.	A	T	353.82	PASS	AC=1;AF=0.5;AN=2;DP=107;MQ=60;set=variant9-variant14-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:136,0,411:5,10,3,5
chr1	210416438	.	CA	CAA,CAAA,CAAAA,C,CAAAAA,CAAAAAAAAAA	281	PASS	AC=0,0,0,1,0,0;AF=0.2,0.183,0.083,0.033,0.017,0.017;AN=2;DP=4359;set=filterInvariant-filterInvariant3-filterInvariant4-variant6-variant7-variant8-variant10-variant11-variant14-filterInvariant15-filterInvariant16-variant17-filterInvariant19-variant21-filterInvariant22-variant24-filterInvariant25-variant26-variant30-variant31-variant33-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/4:75:99:29,16,26,4
chr1	210501504	.	T	A	193.17	PASS	AC=2;AF=0.681;AN=2;DP=463;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:593,45,0:0,0,13,2
chr1	210502184	.	G	T	139.36	PASS	AC=1;AF=0.528;AN=2;DP=424;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant10-variant14-variant20-variant22-variant23-variant26-variant27-variant28-variant30-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,17:23:99:524,0,197:4,2,12,5
chr1	210522080	.	CGT	CGTGTGTGT,CGTGTGTGTGTGT,CGTGTGT,C,CGTGT,CGTGTGTGTGTGTGT,CGTGTGTGTGT	361.23	PASS	AC=1,0,1,0,0,0,0;AF=0.244,0.116,0.209,0.035,0.035,0.035,0.081;AN=2;DP=888;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/1:19:99:0,0,15,4
chr1	210536078	.	C	G	1437.46	PASS	AC=2;AF=0.821;AN=2;DP=3932;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2991,272,0:0,0,59,32
chr1	210536278	.	C	A	804.58	PASS	AC=1;AF=0.529;AN=2;DP=1364;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant14-variant20-variant22-variant23-variant26-variant27-variant28-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:778,0,993:14,23,9,21
chr1	210536387	.	T	C	141.14	PASS	AC=1;AF=0.529;AN=2;DP=190;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant14-variant20-variant22-variant23-variant26-variant27-variant28-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:98:98,0,157:1,5,0,3
chr1	210577831	.	C	T	551.34	PASS	AC=1;AF=0.529;AN=2;DP=1118;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant14-variant20-variant22-variant23-variant26-variant27-variant28-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,32:56:99:883,0,613:14,10,18,14
chr1	210577873	.	G	C	867.29	PASS	AC=2;AF=0.802;AN=2;DP=3655;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2393,216,0:0,0,43,29
chr1	210577901	.	T	C	959.43	PASS	AC=1;AF=0.529;AN=2;DP=1609;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant14-variant20-variant22-variant23-variant26-variant27-variant28-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,51:81:99:1379,0,717:17,13,31,20
chr1	210591742	.	TG	T	1102.63	PASS	AC=2;AF=0.689;AN=2;DP=3812;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,80:81:99:2510,212,0:0,1,19,61
chr1	210686570	.	A	G	1091.1	PASS	AC=2;AF=0.793;AN=2;DP=3085;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1272,132,0:0,0,17,27
chr1	210761462	.	G	C	857.13	PASS	AC=2;AF=1;AN=2;DP=1528;FS=0;MQ=60;MQRankSum=1.22;ReadPosRankSum=0.835;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1491,123,0:0,0,7,34
chr1	210847514	.	A	T	945.18	PASS	AC=1;AF=0.718;AN=2;DP=2940;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,37:74:99:847,0,1029:20,17,21,16
chr1	210847740	.	A	C	1941.39	PASS	AC=1;AF=0.5;AN=2;DP=149;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.464;QD=13.03;ReadPosRankSum=0.55;SOR=0.706;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:69,80:149:99:1970,0,1721:36,33,42,38
chr1	210848224	.	A	G	1093.12	PASS	AC=2;AF=0.86;AN=2;DP=1825;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1162,111,0:0,0,19,18
chr1	210848807	.	AT	A,ATTT,ATT	2119.3	PASS	AC=0,0,1;AF=0.619,0.048,0.083;AN=2;DP=11151;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:202:99:48,59,44,51
chr1	210849028	.	G	C	1287.2	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=0.818;FractionInformativeReads=1;MQ=60;MQRankSum=0.146;QD=14.3;ReadPosRankSum=1.037;SOR=0.54;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,49:90:99:1315,0,960:15,26,20,29
chr1	210849236	.	C	T	157.54	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=4.129;FractionInformativeReads=1;MQ=60;MQRankSum=-0.699;QD=6.56;ReadPosRankSum=-0.381;SOR=1.571;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:186,0,682:9,8,2,5
chr1	210849237	.	G	A	450.77	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=4.31;FractionInformativeReads=1;MQ=60;MQRankSum=0.568;QD=19.6;ReadPosRankSum=0.434;SOR=0.595;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:479,0,246:2,5,9,7
chr1	210849701	.	C	G	649.34	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=3.116;QD=10.64;ReadPosRankSum=3.204;SOR=0.714;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,25:61:99:678,0,1077:9,27,6,19
chr1	210856585	.	G	T	3012.75	PASS	AC=2;AF=0.86;AN=2;DP=3428;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2101,201,0:0,0,38,29
chr1	210857145	.	C	T	2103.04	PASS	AC=1;AF=0.5;AN=2;DP=162;FS=2.735;FractionInformativeReads=1;MQ=60;MQRankSum=0.236;QD=12.98;ReadPosRankSum=-0.712;SOR=0.512;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:78,84:162:99:2131,0,1879:35,43,42,42
chr1	210857457	.	A	G	1782.09	PASS	AC=1;AF=0.833;AN=2;DP=2499;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,23:55:99:572,0,914:12,20,8,15
chr1	211093590	.	C	T	44.95	PASS	AC=1;AF=0.563;AN=2;DP=330;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:272,0,105:2,2,1,7
chr1	211192707	.	G	A	284.73	PASS	AC=1;AF=0.556;AN=2;DP=722;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,21:31:99:715,0,341:1,9,5,16
chr1	211264142	.	G	T	510.98	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.345;FractionInformativeReads=1;MQ=60;MQRankSum=0.3;QD=12.46;ReadPosRankSum=-0.404;SOR=0.452;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:539,0,637:5,16,6,14
chr1	211276828	.	C	T	1363.11	PASS	AC=1;AF=0.565;AN=2;DP=2127;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant26-variant28-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,19:63:99:374,0,1251:25,19,11,8
chr1	211280724	.	TAA	TA,T,TAAA	817.36	PASS	AC=0,1,1;AF=0.432,0.351,0.027;AN=2;DP=3797;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/3:73:99:2,2,28,41
chr1	211380444	.	G	T	1536.01	PASS	AC=1;AF=0.583;AN=2;DP=489;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant11-variant15-variant17-variant20-variant22-variant30-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:732,0,1325:16,6,12,7
chr1	211380445	.	C	T	1536.01	PASS	AC=1;AF=0.583;AN=2;DP=491;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant11-variant15-variant17-variant20-variant22-variant30-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:732,0,1325:15,6,12,7
chr1	211380668	.	T	C	1007.23	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=0.774;FractionInformativeReads=0.99;MQ=60;MQRankSum=-2.56;QD=10.28;ReadPosRankSum=-1.625;SOR=0.821;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,41:97:99:1035,0,1567:31,25,24,17
chr1	211380770	.	T	C	855.89	PASS	AC=1;AF=0.656;AN=2;DP=6197;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,94:214:99:2360,0,2904:71,49,58,36
chr1	211444382	.	G	A	189.86	PASS	AC=1;AF=0.605;AN=2;DP=194;FractionInformativeReads=1;set=variant-variant7-variant9-variant10-variant11-variant15-variant17-variant20-variant22-variant24-variant26-variant28-variant30-variant34-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:157,0,141:4,0,4,1
chr1	211447435	.	CT	C	191.23	PASS	AC=2;AF=0.964;AN=2;DP=351;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:247,30,0:0,0,9,1
chr1	211447625	.	G	A	1720.99	PASS	AC=1;AF=0.735;AN=2;DP=5102;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,75:147:99:1622,0,1644:38,34,39,36
chr1	211451393	.	TATC	T	67.63	PASS	AC=1;AF=0.6;AN=2;DP=235;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant11-variant15-variant17-variant22-variant24-variant26-variant28-variant30-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:198,0,173:4,0,5,0
chr1	211452529	.	TAA	TA,T	673.3	PASS	AC=2,0;AF=0.989,0.011;AN=2;DP=1044;set=Intersection	GT:DP:GQ:SB	1/1:18:54:0,0,15,3
chr1	211452678	.	G	A	1120.04	PASS	AC=1;AF=0.735;AN=2;DP=2628;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:630,0,836:13,18,14,14
chr1	211452728	.	G	A	987.98	PASS	AC=1;AF=0.735;AN=2;DP=1402;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:373,0,399:5,10,7,10
chr1	211487347	.	GT	G	3393.26	PASS	AC=1;AF=0.735;AN=2;DP=6558;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,87:170:99:2735,0,2586:36,47,43,44
chr1	211487702	.	T	C	1511.55	PASS	AC=1;AF=0.5;AN=2;DP=92;FS=2.814;FractionInformativeReads=1;MQ=60;MQRankSum=-0.629;QD=16.43;ReadPosRankSum=-1.378;SOR=0.442;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,55:92:99:1540,0,1023:14,23,25,30
chr1	211488076	.	A	G	15717.5	PASS	AC=2;AF=0.977;AN=2;DP=16649;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,344:344:99:11134,1031,0:0,0,166,178
chr1	211488357	.	C	T	4443.94	PASS	AC=1;AF=0.5;AN=2;DP=302;FS=1.362;FractionInformativeReads=1;MQ=60;MQRankSum=3.54;QD=14.72;ReadPosRankSum=0.93;SOR=0.614;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:146,156:302:99:4472,0,4195:77,69,79,77
chr1	211488538	.	C	A	22314.8	PASS	AC=2;AF=0.977;AN=2;DP=28584;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,641:641:99:19275,1918,0:0,0,335,306
chr1	211489187	.	T	G	7192.61	PASS	AC=2;AF=0.977;AN=2;DP=9413;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:5468,503,0:0,0,92,76
chr1	211499801	.	G	A	251.68	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.566;QD=22.88;ReadPosRankSum=-1.106;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:90:280,0,90:3,0,7,1
chr1	211500096	.	CCCGCCCGCGCCCCT	C	940.53	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.336;FractionInformativeReads=0.878;MQ=60;MQRankSum=-0.309;QD=22.94;ReadPosRankSum=2.095;SOR=0.639;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,25:36:99:978,0,1417:5,6,13,12
chr1	211527609	.	C	A	895.41	PASS	AC=2;AF=1;AN=2;DP=701;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:346,27,0:0,0,6,3
chr1	211533990	.	A	G	973	PASS	AC=1;AF=0.542;AN=2;DP=930;MQ=60;set=variant9-variant11-variant15-variant17-variant20-variant22-variant30-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,33:79:99:752,0,1161:26,20,21,12
chr1	211545442	.	CTT	C,CT	706.29	PASS	AC=0,1;AF=0.013,0.65;AN=2;DP=1426;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:26:99:9,4,8,5
chr1	211545648	.	G	A	884.67	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.673;QD=11.8;ReadPosRankSum=-1.301;SOR=0.653;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:913,0,1183:19,21,17,18
chr1	211545742	.	C	T	1362.69	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=5.174;FractionInformativeReads=0.989;MQ=60;MQRankSum=-1.641;QD=14.5;ReadPosRankSum=-0.788;SOR=1.016;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,53:93:99:1391,0,1001:19,21,31,22
chr1	211649825	.	A	C	164.12	PASS	AC=1;AF=0.708;AN=2;DP=97;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant8-variant10-variant13-variant24-variant25-variant26-variant28-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:34:107,0,34:1,1,3,0
chr1	211650729	.	A	G	320.05	PASS	AC=1;AF=0.6;AN=2;DP=230;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant24-variant25-variant26-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:258,0,305:7,1,7,0
chr1	211650795	.	CA	C,CAA	53.15	PASS	AC=1,0;AF=0.483,0.05;AN=2;DP=1539;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-filterInvariant17-variant24-variant25-variant26-variant28-variant33-variant34-variant36-filterInvariant37-filterInvariant39-variant40-variant41-filterInvariant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:55:99:26,7,17,5
chr1	211651035	.	C	G	7096.2	PASS	AC=1;AF=0.6;AN=2;DP=4969;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant24-variant25-variant26-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:178,129:307:99:4758,0,16281:81,97,53,76
chr1	211651047	.	C	T	7232.8	PASS	AC=1;AF=0.6;AN=2;DP=4856;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant24-variant25-variant26-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:174,127:301:99:4784,0,16529:79,95,54,73
chr1	211651070	.	C	CAG	6315.86	PASS	AC=1;AF=0.6;AN=2;DP=4527;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant24-variant25-variant26-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:164,122:286:99:4826,0,15661:74,90,53,69
chr1	211652010	.	T	A	585.01	PASS	AC=1;AF=0.6;AN=2;DP=1075;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant24-variant25-variant26-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:711,0,741:18,14,17,16
chr1	211652185	.	C	G	1671.16	PASS	AC=1;AF=0.538;AN=2;DP=1208;set=variant3-variant14-variant18-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,32:70:99:873,0,910:20,18,18,14
chr1	211652755	.	T	A	403.98	PASS	AC=1;AF=0.6;AN=2;DP=431;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant24-variant25-variant26-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:487,0,560:2,15,0,14
chr1	211654216	.	A	G	161.56	PASS	AC=1;AF=0.538;AN=2;DP=175;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant18-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:13:202,0,13:1,0,5,2
chr1	211665298	.	A	AG	215.16	PASS	AC=2;AF=0.797;AN=2;DP=581;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:767,57,0:0,0,9,10
chr1	211665390	.	GGTGTGTGTGTGT	G,GGTGTGTGTGTGTGT,GGTGTGTGTGT,GGTGT,GGTGTGT,GGTGTGTGT	215.66	PASS	AC=1,0,0,0,0,0;AF=0.147,0.015,0.324,0.206,0.029,0.044;AN=2;DP=426;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:4:6:1,0,1,2
chr1	211745154	.	C	G	6071.05	PASS	AC=1;AF=0.625;AN=2;DP=4106;MQ=60;set=variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant21-variant26-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:88,95:183:99:2264,0,2055:38,50,41,54
chr1	211745290	.	T	A	1624.19	PASS	AC=1;AF=0.5;AN=2;DP=1163;MQ=60;set=variant7-variant8-variant9-variant10-variant26-variant30-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,40:84:99:993,0,1229:22,22,19,21
chr1	211747827	.	C	G	1812.12	PASS	AC=1;AF=0.5;AN=2;DP=180;FS=2.637;FractionInformativeReads=1;MQ=60;MQRankSum=0.404;QD=10.07;ReadPosRankSum=-2.972;SOR=0.519;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:100,80:180:99:1840,0,2675:39,61,35,45
chr1	211747902	.	A	T	1895.53	PASS	AC=1;AF=0.5;AN=2;DP=1282;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant10-variant26-variant30-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,50:100:99:1417,0,1386:20,30,22,28
chr1	211748118	.	C	T	6112.11	PASS	AC=1;AF=0.536;AN=2;DP=8279;MQ=60;set=variant6-variant7-variant8-variant9-variant10-variant26-variant29-variant30-variant31-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:327,225:552:99:5091,0,7725:173,154,116,109
chr1	211752148	.	T	C	104.18	PASS	AC=1;AF=0.571;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant9-variant10-variant26-variant29-variant30-variant31-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:58:220,0,58:1,2,2,6
chr1	211836789	.	T	C	3221.05	PASS	AC=2;AF=0.533;AN=2;DP=3435;set=variant5-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant20-variant21-variant22-variant32-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,189:189:99:6793,566,0:0,0,50,139
chr1	211840498	.	T	C	598.87	PASS	AC=2;AF=0.556;AN=2;DP=344;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant12-variant20-variant21-variant22-variant32-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1177,105,0:0,0,15,20
chr1	211842808	.	A	C	194.98	PASS	AC=2;AF=0.765;AN=2;DP=249;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:302,21,0:0,0,0,7
chr1	211846876	.	A	G	3002.71	PASS	AC=2;AF=0.609;AN=2;DP=6374;set=variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,205:205:99:6339,615,0:0,0,131,74
chr1	211916895	.	A	AT	3311.45	PASS	AC=2;AF=0.942;AN=2;DP=3605;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2077,207,0:0,0,33,36
chr1	211918115	.	C	T	3549.09	PASS	AC=1;AF=0.553;AN=2;DP=5067;set=variant4-variant8-variant9-variant10-variant11-variant12-variant16-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:128,123:251:99:3009,0,3134:62,66,59,64
chr1	211919937	.	T	C	2589.37	PASS	AC=1;AF=0.543;AN=2;DP=3279;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:83,79:162:99:2076,0,2311:31,52,42,37
chr1	211920624	.	G	A	2492.04	PASS	AC=1;AF=0.553;AN=2;DP=3467;MQ=60;set=variant4-variant8-variant9-variant10-variant11-variant12-variant16-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:94,81:175:99:2089,0,2585:61,33,52,29
chr1	211920765	.	C	T	4091.49	PASS	AC=1;AF=0.5;AN=2;DP=673;FractionInformativeReads=1;MQ=60;set=variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:173,162:335:99:3738,0,4296:83,90,80,82
chr1	211921229	.	C	A	4795.29	PASS	AC=1;AF=0.553;AN=2;DP=8393;MQ=60;set=variant4-variant8-variant9-variant10-variant11-variant12-variant16-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:182,202:384:99:5064,0,4738:102,80,112,90
chr1	211921767	.	C	T	1604.49	PASS	AC=1;AF=0.617;AN=2;DP=1727;MQ=60;set=variant-variant2-variant5-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,21:49:99:517,0,722:9,19,7,14
chr1	211922355	.	C	T	4414.43	PASS	AC=1;AF=0.617;AN=2;DP=4454;MQ=60;set=variant-variant2-variant5-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,64:142:99:1491,0,1975:38,40,30,34
chr1	211922603	.	G	A	2088.39	PASS	AC=1;AF=0.553;AN=2;DP=2587;MQ=60;set=variant4-variant8-variant9-variant10-variant11-variant12-variant16-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:76,54:130:99:1324,0,2100:39,37,26,28
chr1	212003211	.	C	CT	431.83	PASS	AC=1;AF=0.563;AN=2;DP=726;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant14-variant16-variant19-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:167,0,253:5,6,5,3
chr1	212004100	.	C	G	157.42	PASS	AC=1;AF=0.667;AN=2;DP=283;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:280,0,100:3,2,4,6
chr1	212113995	.	G	A	3747.04	PASS	AC=2;AF=0.762;AN=2;DP=6063;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3209,356,0:0,0,53,66
chr1	212114267	.	T	A	1576.77	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=1.628;FractionInformativeReads=1;MQ=60;MQRankSum=-0.819;QD=14.6;ReadPosRankSum=-0.628;SOR=0.874;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,60:108:99:1605,0,1377:17,31,19,41
chr1	212114662	.	A	G	3991.23	PASS	AC=1;AF=0.641;AN=2;DP=2845;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,36:86:99:1371,0,1978:24,26,16,20
chr1	212114663	.	G	A	3991.23	PASS	AC=1;AF=0.641;AN=2;DP=2811;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,35:85:99:1371,0,1978:24,26,16,19
chr1	212114666	.	C	G	3841.77	PASS	AC=1;AF=0.641;AN=2;DP=2764;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,36:85:99:1341,0,1981:23,26,16,20
chr1	212114705	.	A	T	847.67	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0.973;FractionInformativeReads=1;MQ=60;MQRankSum=2.112;QD=13.04;ReadPosRankSum=0.415;SOR=0.554;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:876,0,800:10,20,13,22
chr1	212142054	.	GA	G	531.24	PASS	AC=2;AF=0.686;AN=2;DP=1549;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-filterInvariant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,28:29:58:625,58,0:0,1,5,23
chr1	212209367	.	T	TC	489.23	PASS	AC=1;AF=0.641;AN=2;DP=968;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:378,0,451:1,14,0,13
chr1	212217971	.	C	CTT	1576.82	PASS	AC=2;AF=0.72;AN=2;DP=1661;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:2001,146,0:0,0,26,14
chr1	212220486	.	T	C	1015.96	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0.922;FractionInformativeReads=1;MQ=60;MQRankSum=-0.537;QD=14.51;ReadPosRankSum=0.119;SOR=0.571;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,41:70:99:1044,0,693:18,11,24,17
chr1	212220847	.	G	A	697.58	PASS	AC=2;AF=0.703;AN=2;DP=775;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:533,39,0:0,0,1,12
chr1	212236157	.	G	T	1485.24	PASS	AC=2;AF=0.955;AN=2;DP=1978;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1480,143,0:0,0,34,14
chr1	212241714	.	TAA	TA,TAAAA,TAAA,T	1233.05	PASS	AC=1,0,0,0;AF=0.538,0.038,0.013,0.013;AN=2;DP=3023;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:42:36:3,4,10,25
chr1	212250820	.	T	C	61.77	PASS	AC=1;AF=0.762;AN=2;DP=88;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant11-variant16-variant20-variant21-variant24-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:77:79,0,77:2,0,2,1
chr1	212251103	.	A	G	279.11	PASS	AC=2;AF=0.955;AN=2;DP=782;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:368,42,0:0,0,7,7
chr1	212251367	.	GT	G	782.69	PASS	AC=2;AF=0.955;AN=2;DP=863;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:515,54,0:0,0,15,3
chr1	212273639	.	C	T	3724.38	PASS	AC=2;AF=0.955;AN=2;DP=6094;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4025,404,0:0,0,69,66
chr1	212274413	.	A	C	2004.5	PASS	AC=2;AF=1;AN=2;DP=2773;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2304,207,0:0,0,22,47
chr1	212276081	.	A	G	184.87	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=2.884;FractionInformativeReads=1;MQ=60;MQRankSum=-1.264;QD=10.27;ReadPosRankSum=1.077;SOR=2.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:213,0,357:9,3,6,0
chr1	212277107	.	T	G	14314.5	PASS	AC=1;AF=0.641;AN=2;DP=12823;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:214,165:379:99:3885,0,5374:94,120,79,86
chr1	212277304	.	C	G	8681.24	PASS	AC=1;AF=0.641;AN=2;DP=8427;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,150:298:99:3811,0,3623:78,70,81,69
chr1	212277588	.	A	ACTGTGTAGACTTTATGTCAGTT,AGTGTGTAGACTTTATGTCAGTT	10823.6	PASS	AC=2,0;AF=0.932,0.023;AN=2;DP=9788;set=Intersection	GT:DP:GQ:SB	1/1:171:99:0,0,69,102
chr1	212459470	.	G	C	1381.53	PASS	AC=1;AF=0.5;AN=2;DP=267;FractionInformativeReads=1;MQ=60;set=variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,60:132:99:1360,0,1662:41,31,33,27
chr1	212475634	.	C	T	341.13	PASS	AC=1;AF=0.559;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant9-variant14-variant17-variant21-variant23-variant25-variant27-variant28-variant31-variant34-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:241,0,182:1,6,2,7
chr1	212506790	.	A	G	364.01	PASS	AC=1;AF=0.625;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:494,0,710:17,6,13,8
chr1	212521639	.	T	G	1497.47	PASS	AC=2;AF=0.869;AN=2;DP=1924;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1572,147,0:0,0,32,17
chr1	212526013	.	G	C	471.87	PASS	AC=1;AF=0.526;AN=2;DP=297;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant9-variant14-variant17-variant21-variant23-variant25-variant27-variant28-variant31-variant34-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:215,0,262:7,2,6,1
chr1	212526288	.	C	T	5527.96	PASS	AC=2;AF=0.866;AN=2;DP=6801;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:5084,503,0:0,0,86,82
chr1	212530182	.	A	T	560.25	PASS	AC=1;AF=0.625;AN=2;DP=253;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,40:92:99:1018,0,1401:18,34,17,23
chr1	212530192	.	T	C	2447.33	PASS	AC=2;AF=0.977;AN=2;DP=2944;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3012,243,0:0,0,31,50
chr1	212530659	.	CT	CTT,C	56.63	PASS	AC=1,0;AF=0.375,0.125;AN=2;DP=86;MQ=60;set=variant9-variant18-variant39-variant41	GT:DP:GQ:SB	0/1:16:84:0,5,2,9
chr1	212534448	.	T	C	2677.1	PASS	AC=1;AF=0.594;AN=2;DP=5014;MQ=60;set=variant2-variant3-variant6-variant13-variant17-variant18-variant22-variant26-variant28-variant29-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:173,126:299:99:3078,0,4607:68,105,47,79
chr1	212538572	.	C	T	2678.47	PASS	AC=1;AF=0.625;AN=2;DP=871;MQ=60;set=variant13-variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:123,104:227:99:2570,0,3098:52,71,43,61
chr1	212550855	.	G	A	649.18	PASS	AC=1;AF=0.5;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,41:89:99:1045,0,1087:24,24,27,14
chr1	212551115	.	C	T	68.41	PASS	AC=1;AF=0.5;AN=2;DP=109;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:304,0,395:3,10,2,9
chr1	212551139	.	G	GCA	36.78	PASS	AC=1;AF=0.553;AN=2;DP=373;MQ=60;set=variant-variant4-variant5-variant6-variant9-variant14-variant17-variant21-variant23-variant25-variant27-variant28-variant31-variant34-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:329,0,176:1,4,2,7
chr1	212560327	.	A	G	2052.8	PASS	AC=2;AF=0.977;AN=2;DP=7215;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3611,348,0:0,0,46,70
chr1	212617593	.	C	T	351.83	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.707;QD=15.99;ReadPosRankSum=0.788;SOR=0.313;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:380,0,377:10,1,9,2
chr1	212617860	.	CGTGTGTGTGT	CGTGT,CGTGTGT,CGTGTGTGTGTGT,CGTGTGTGT,C,CGT	810.5	PASS	AC=0,1,0,0,0,1;AF=0.118,0.329,0.039,0.079,0.079,0.039;AN=2;DP=2400;set=variant-variant2-variant4-variant5-filterInvariant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	6/2:16:99:0,0,0,16
chr1	212738835	.	G	T	337.55	PASS	AC=1;AF=0.5;AN=2;DP=542;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant16-variant19-variant23-variant24-variant29-variant32-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:415,0,260:3,7,3,10
chr1	212738909	.	T	C	143.54	PASS	AC=1;AF=0.727;AN=2;DP=297;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:232,0,170:1,4,2,6
chr1	212788614	.	T	TCACAGGTATTCATTCTTTCGG	279.54	PASS	AC=1;AF=0.5;AN=2;DP=124;FS=0;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,31:50:99:1227,0,1017:3,16,4,27
chr1	212793613	.	T	C	521.88	PASS	AC=1;AF=0.756;AN=2;DP=2026;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:856,0,727:17,12,14,17
chr1	212798977	.	A	G	3088.29	PASS	AC=1;AF=0.55;AN=2;DP=3857;MQ=60;set=variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant24-variant27-variant28-variant30-variant32-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,85:158:99:2078,0,1904:41,32,48,37
chr1	212799870	.	A	G	359	PASS	AC=2;AF=0.86;AN=2;DP=3522;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,92:93:99:2878,242,0:1,0,49,43
chr1	212799949	.	C	T	415.48	PASS	AC=1;AF=0.692;AN=2;DP=4099;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,55:110:99:1322,0,1312:28,27,28,27
chr1	212870103	.	C	G	732.88	PASS	AC=2;AF=1;AN=2;DP=881;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:932,78,0:0,0,20,6
chr1	212870292	.	C	T	2840.89	PASS	AC=1;AF=0.625;AN=2;DP=1139;MQ=60;set=variant7-variant11-variant19-variant22-variant23-variant29-variant32-variant33-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,51:108:99:1363,0,1508:32,25,28,23
chr1	212872852	.	T	C	835.44	PASS	AC=1;AF=0.625;AN=2;DP=423;MQ=60;set=variant7-variant11-variant19-variant22-variant23-variant29-variant32-variant33-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:548,0,578:13,8,12,6
chr1	212873074	.	C	T	1382.44	PASS	AC=1;AF=0.625;AN=2;DP=425;MQ=60;set=variant7-variant11-variant19-variant22-variant23-variant29-variant32-variant33-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:333,0,879:8,11,5,5
chr1	212873096	.	T	C	1256.49	PASS	AC=1;AF=0.625;AN=2;DP=379;FractionInformativeReads=1;set=variant7-variant11-variant19-variant22-variant23-variant29-variant32-variant33-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:234,0,786:8,8,4,4
chr1	212873431	.	C	T	571.23	PASS	AC=2;AF=0.667;AN=2;DP=127;FractionInformativeReads=1;MQ=60;set=variant7-variant11-variant19-variant22-variant23-variant29-variant32-variant33-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,0,3
chr1	212900311	.	G	C	677.96	PASS	AC=1;AF=0.72;AN=2;DP=1465;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:644,0,565:9,11,9,13
chr1	212900434	.	C	CG	932.34	PASS	AC=1;AF=0.72;AN=2;DP=1163;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,17:40:99:566,0,804:12,11,8,9
chr1	212900487	.	A	G	1492.59	PASS	AC=2;AF=0.966;AN=2;DP=1957;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1412,120,0:0,0,22,18
chr1	212910930	.	G	A	3916.66	PASS	AC=1;AF=0.72;AN=2;DP=4429;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,47:95:99:1279,0,1485:22,26,20,27
chr1	212911366	.	CTT	CT,C	1868.79	PASS	AC=1,0;AF=0.725,0.025;AN=2;DP=4091;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:79:99:16,20,22,21
chr1	212911615	.	C	T	1129.87	PASS	AC=1;AF=0.607;AN=2;DP=1482;MQ=60;set=variant-variant7-variant11-variant16-variant19-variant22-variant29-variant31-variant32-variant33-variant34-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,45:94:99:1292,0,1331:27,22,30,15
chr1	212911836	.	T	C	5707.53	PASS	AC=1;AF=0.72;AN=2;DP=7029;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,76:170:99:1954,0,2587:41,53,33,43
chr1	212912108	.	ATT	A,AT,ATTT	483.4	PASS	AC=0,2,0;AF=0.405,0.286,0.083;AN=2;DP=1130;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:11:7:0,1,4,6
chr1	212961080	.	T	TAAAG	358.35	PASS	AC=1;AF=0.594;AN=2;DP=302;MQ=60;set=variant-variant4-variant7-variant11-variant16-variant19-variant22-variant23-variant29-variant31-variant32-variant33-variant34-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:384,0,661:1,11,0,10
chr1	212965095	.	G	A	1387.32	PASS	AC=1;AF=0.607;AN=2;DP=1902;set=variant-variant7-variant11-variant16-variant19-variant22-variant29-variant31-variant32-variant33-variant34-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,51:129:99:1277,0,1976:40,38,26,25
chr1	212965149	.	C	A	996.33	PASS	AC=1;AF=0.5;AN=2;DP=431;FractionInformativeReads=1;MQ=60;set=variant14-variant18-variant20-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,71:124:99:2055,0,1436:25,28,38,33
chr1	212965469	.	C	T	702.89	PASS	AC=1;AF=0.594;AN=2;DP=979;MQ=60;set=variant-variant4-variant7-variant11-variant16-variant19-variant22-variant23-variant29-variant31-variant32-variant33-variant34-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:745,0,838:6,19,7,19
chr1	212967871	.	G	T	103.54	PASS	AC=1;AF=0.75;AN=2;DP=176;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:62:112,0,62:2,0,3,0
chr1	212969842	.	CT	CTT,C	100.04	PASS	AC=0,1;AF=0.529,0.015;AN=2;DP=983;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant40-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	0/2:34:69:17,10,3,4
chr1	212970375	.	A	G	1251.44	PASS	AC=2;AF=1;AN=2;DP=1725;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:893,81,0:0,0,20,7
chr1	212978197	.	T	G	292.28	PASS	AC=1;AF=0.607;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant11-variant16-variant19-variant22-variant29-variant31-variant32-variant33-variant34-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:85:285,0,85:0,3,0,8
chr1	213003789	.	G	A	37.77	PASS	AC=2;AF=0.6;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;set=variant7-variant19-variant22-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,1,3
chr1	213009178	.	CAA	CA,C	57.2	PASS	AC=1,0;AF=0.474,0.026;AN=2;DP=1121;set=filterInvariant-variant2-variant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:21:99:5,2,12,2
chr1	213009469	.	A	G	10909.2	PASS	AC=2;AF=0.8;AN=2;DP=12347;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,284:284:99:8470,848,0:0,0,145,139
chr1	213020876	.	C	T	2892.5	PASS	AC=2;AF=0.78;AN=2;DP=4927;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2513,263,0:0,0,48,40
chr1	213021136	.	CTTTTTTTTTT	C,CTTTTTTTTTTTT,CT,CTTTTTTTTTTTTT,CTTTTTTTT,CTTTTTTTTTTT,CTTTTTTTTTTTTTTT,CTTTTT,CTTTTTT	292.11	PASS	AC=0,0,0,0,0,1,0,0,0;AF=0.095,0.119,0.024,0.071,0.095,0.095,0.024,0.024,0.024;AN=2;DP=558;set=variant-variant3-variant7-variant8-variant12-filterInvariant15-filterInvariant17-variant19-variant23-variant24-variant25-filterInvariant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-filterInvariant41-variant42	GT:DP:GQ:SB	0/6:9:5:0,2,1,6
chr1	213031158	.	C	T	4074.76	PASS	AC=1;AF=0.703;AN=2;DP=5330;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,47:115:99:1097,0,1710:37,31,29,18
chr1	213031350	.	C	T	4768.32	PASS	AC=1;AF=0.703;AN=2;DP=5123;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,39:147:99:887,0,2730:53,55,17,22
chr1	213031448	.	G	C	1644.67	PASS	AC=1;AF=0.672;AN=2;DP=3169;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,30:90:99:1054,0,3337:24,36,15,15
chr1	213031464	.	C	G	2240.65	PASS	AC=1;AF=0.5;AN=2;DP=725;FractionInformativeReads=1;MQ=60;set=variant7-variant11-variant22-variant29-variant32-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,30:77:99:1101,0,3103:17,30,16,14
chr1	213031473	.	A	C	3754.99	PASS	AC=1;AF=0.703;AN=2;DP=3038;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,30:71:99:1129,0,2745:13,28,16,14
chr1	213031709	.	C	T	1490.41	PASS	AC=1;AF=0.703;AN=2;DP=1975;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,29:51:99:867,0,569:13,9,15,14
chr1	213031948	.	G	C	4308.86	PASS	AC=1;AF=0.703;AN=2;DP=4993;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,70:120:99:1861,0,1158:27,23,38,32
chr1	213032568	.	T	A,G	2912.49	PASS	AC=1,0;AF=0.7,0.014;AN=2;DP=4763;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:112:99:26,34,23,29
chr1	213037244	.	A	G	413.47	PASS	AC=1;AF=0.5;AN=2;DP=274;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant16-variant18-variant20-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,21:33:99:636,0,386:1,11,4,17
chr1	213056819	.	A	G	3742.79	PASS	AC=2;AF=1;AN=2;DP=4829;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3330,356,0:0,0,53,66
chr1	213056892	.	A	G	2137.81	PASS	AC=1;AF=0.714;AN=2;DP=2387;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:761,0,1032:15,24,7,20
chr1	213058852	.	T	A	564.11	PASS	AC=1;AF=0.722;AN=2;DP=408;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:159,0,246:0,3,1,3
chr1	213061399	.	A	G	1125.9	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.82;QD=11.85;ReadPosRankSum=0.175;SOR=0.641;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,48:95:99:1154,0,1214:17,30,18,30
chr1	213062017	.	T	TTTG	1574.34	PASS	AC=1;AF=0.837;AN=2;DP=2260;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:775,0,514:1,13,1,19
chr1	213068192	.	T	C	1594.38	PASS	AC=2;AF=0.943;AN=2;DP=1357;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1186,96,0:0,0,27,5
chr1	213068233	.	C	T	1173	PASS	AC=1;AF=0.8;AN=2;DP=2564;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,34:61:99:864,0,637:17,10,23,11
chr1	213068595	.	C	T	834.89	PASS	AC=1;AF=0.667;AN=2;DP=2549;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:673,0,961:20,16,16,13
chr1	213068971	.	T	G	2243.98	PASS	AC=1;AF=0.8;AN=2;DP=5594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,55:120:99:1717,0,1856:36,29,36,19
chr1	213069258	.	T	A	4204.11	PASS	AC=1;AF=0.677;AN=2;DP=9491;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,146:270:99:4005,0,2967:51,73,58,88
chr1	213069420	.	C	T	2018.08	PASS	AC=1;AF=0.677;AN=2;DP=2874;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,28:77:99:863,0,1336:21,28,8,20
chr1	213069474	.	CT	C	1293.05	PASS	AC=1;AF=0.5;AN=2;DP=297;MQ=60;set=variant4-variant23-filterInvariant36-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:60,13:73:88:88,0,1395:42,18,10,3
chr1	213069783	.	A	G	1704.56	PASS	AC=1;AF=0.8;AN=2;DP=4232;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,45:102:99:1274,0,1881:37,20,27,18
chr1	213071051	.	G	A	315.79	PASS	AC=1;AF=0.667;AN=2;DP=891;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:165,0,236:4,3,4,2
chr1	213071210	.	G	A	1519.19	PASS	AC=1;AF=0.603;AN=2;DP=2586;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,31:75:99:946,0,1174:27,17,24,7
chr1	213071341	.	T	C	4343.28	PASS	AC=1;AF=0.603;AN=2;DP=8537;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,134:231:99:3652,0,2229:54,43,79,55
chr1	213071445	.	G	A	3662.26	PASS	AC=1;AF=0.617;AN=2;DP=7542;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant23-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,141:247:99:3727,0,2825:56,50,72,69
chr1	213071540	.	G	A	4853.55	PASS	AC=1;AF=0.577;AN=2;DP=4189;MQ=60;set=variant-variant7-variant13-variant14-variant16-variant18-variant20-variant31-variant32-variant33-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:136,150:286:99:3875,0,3516:81,55,76,74
chr1	213071761	.	A	ATAAT	2913.14	PASS	AC=1;AF=0.603;AN=2;DP=4009;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,55:108:99:2114,0,2958:15,38,18,37
chr1	213071945	.	G	T	522.18	PASS	AC=1;AF=0.577;AN=2;DP=737;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant13-variant14-variant16-variant18-variant20-variant31-variant32-variant33-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,43:71:99:1009,0,710:10,18,20,23
chr1	213124871	.	G	A	578.1	PASS	AC=1;AF=0.667;AN=2;DP=1003;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:552,0,641:9,10,9,9
chr1	213134407	.	G	T	403.51	PASS	AC=1;AF=0.5;AN=2;DP=269;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant10-variant11-variant22-variant28-variant29-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,22:34:99:671,0,294:9,3,17,5
chr1	213138970	.	A	C	627.91	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=1.953;FractionInformativeReads=1;MQ=60;MQRankSum=-0.575;QD=7.95;ReadPosRankSum=0.015;SOR=1.044;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,29:79:99:656,0,1223:27,23,18,11
chr1	213139748	.	T	G	896.5	PASS	AC=2;AF=0.719;AN=2;DP=2607;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1999,174,0:0,0,17,41
chr1	213140362	.	G	C,A	167.24	PASS	AC=0,1;AF=0.037,0.63;AN=2;DP=856;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:24:99:7,2,12,3
chr1	213140398	.	A	C	439.44	PASS	AC=2;AF=0.683;AN=2;DP=1621;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1454,135,0:0,0,30,15
chr1	213146944	.	A	G	513.23	PASS	AC=2;AF=0.721;AN=2;DP=1095;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1143,87,0:0,0,8,21
chr1	213146952	.	G	T	362.24	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=0;MQ=60;set=variant22-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:363,0,371:3,9,4,10
chr1	213164083	.	A	G	10095.4	PASS	AC=1;AF=0.705;AN=2;DP=12673;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:170,146:316:99:3690,0,4274:82,88,66,80
chr1	213164502	.	A	AAAGT	7518.57	PASS	AC=2;AF=1;AN=2;DP=5376;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:4154,280,0:0,0,42,50
chr1	213166205	.	A	G	423.51	PASS	AC=1;AF=0.5;AN=2;DP=337;FractionInformativeReads=1;MQ=60;set=variant14-variant16-variant18-variant24-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:357,0,622:6,16,7,7
chr1	213168190	.	C	G	1448.95	PASS	AC=1;AF=0.589;AN=2;DP=1500;MQ=60;set=variant-variant3-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,38:58:99:1049,0,585:5,15,15,23
chr1	213170372	.	C	T	111.76	PASS	AC=1;AF=0.5;AN=2;DP=116;FractionInformativeReads=1;MQ=60;set=variant14-variant16-variant18-variant24-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:251,0,456:12,0,7,1
chr1	213173457	.	C	T	254.16	PASS	AC=1;AF=0.692;AN=2;DP=1110;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:300,0,509:10,7,8,3
chr1	213178340	.	G	A	1158.55	PASS	AC=1;AF=0.692;AN=2;DP=3911;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,43:90:99:1138,0,1389:33,14,29,14
chr1	213180363	.	T	C	201.22	PASS	AC=2;AF=1;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;QD=33.54;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:229,18,0:0,0,5,1
chr1	213180441	.	GA	G,GAA	438.87	PASS	AC=0,1;AF=0.214,0.321;AN=2;DP=2006;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:29:99:13,6,5,5
chr1	213189294	.	A	C	674.63	PASS	AC=1;AF=0.5;AN=2;DP=339;FractionInformativeReads=1;MQ=60;set=variant14-variant16-variant18-variant24-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:705,0,811:10,21,5,21
chr1	213224719	.	T	C	1426.16	PASS	AC=2;AF=0.779;AN=2;DP=4813;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3556,339,0:0,0,66,47
chr1	213234933	.	G	GT,GTT	635.52	PASS	AC=1,0;AF=0.539,0.013;AN=2;DP=3956;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:81:99:12,27,15,27
chr1	213405414	.	GGCAACTGAGGAT	G	340.83	PASS	AC=2;AF=0.779;AN=2;DP=1554;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:67:991,67,0:0,0,18,4
chr1	213446620	.	C	T	1184.43	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=0;FractionInformativeReads=1;MQ=59.65;MQRankSum=0.397;QD=16.68;ReadPosRankSum=-0.04;SOR=0.586;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,37:71:99:1213,0,1064:23,11,24,13
chr1	214161473	.	TC	T	569.44	PASS	AC=2;AF=1;AN=2;DP=917;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:825,69,0:0,0,10,13
chr1	214209615	.	G	A	1608.83	PASS	AC=1;AF=0.5;AN=2;DP=123;FS=2.343;FractionInformativeReads=1;MQ=60;MQRankSum=-1.394;QD=13.08;ReadPosRankSum=-0.933;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,62:123:99:1637,0,1720:35,26,39,23
chr1	214209730	.	AC	A	4024.27	PASS	AC=1;AF=0.5;AN=2;DP=225;FS=1.023;FractionInformativeReads=1;MQ=60;MQRankSum=-0.739;QD=17.89;ReadPosRankSum=0.046;SOR=0.774;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:103,122:225:99:4062,0,3363:52,51,64,58
chr1	214209818	.	G	A	2123.84	PASS	AC=1;AF=0.5;AN=2;DP=151;FS=2.11;FractionInformativeReads=1;MQ=60;MQRankSum=1.604;QD=14.07;ReadPosRankSum=0.358;SOR=0.518;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,85:151:99:2152,0,1765:24,42,35,50
chr1	214454471	.	G	A	105.9	PASS	AC=2;AF=0.625;AN=2;DP=333;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant23-variant24-variant25-variant26-variant31-variant32-variant35-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:441,45,0:0,0,9,6
chr1	214478459	.	G	A	865.73	PASS	AC=1;AF=0.55;AN=2;DP=2351;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,37:74:99:872,0,909:22,15,19,18
chr1	214492106	.	C	A	227.38	PASS	AC=1;AF=0.5;AN=2;DP=186;FractionInformativeReads=1;MQ=60;set=variant7-variant13-variant18-variant22-variant26-variant27-variant28-variant30-variant32-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:242,0,154:5,1,6,1
chr1	214492286	.	G	A	4147.94	PASS	AC=2;AF=0.875;AN=2;DP=5197;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2690,275,0:0,0,46,46
chr1	214503489	.	T	G	982.29	PASS	AC=1;AF=0.588;AN=2;DP=3884;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,58:114:99:1419,0,1248:28,28,32,26
chr1	214504577	.	G	A	1363.54	PASS	AC=1;AF=0.5;AN=2;DP=96;FS=1.663;FractionInformativeReads=1;MQ=60;MQRankSum=-1.672;QD=14.2;ReadPosRankSum=-0.022;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,53:96:99:1392,0,934:19,24,21,32
chr1	214504604	.	T	C	3100.34	PASS	AC=2;AF=0.884;AN=2;DP=3810;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2179,222,0:0,0,32,42
chr1	214505596	.	C	T	780.6	PASS	AC=1;AF=0.5;AN=2;DP=1254;MQ=60;set=variant7-variant13-variant18-variant22-variant26-variant27-variant28-variant30-variant32-variant35-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,40:96:99:1041,0,1446:25,31,17,23
chr1	214505716	.	T	C	833.12	PASS	AC=2;AF=0.898;AN=2;DP=935;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:849,72,0:0,0,7,17
chr1	214509830	.	G	A	91.5	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:33:78,0,33:0,1,2,0
chr1	214510375	.	GGACA	G	5621.32	PASS	AC=1;AF=0.5;AN=2;DP=4230;MQ=60;set=variant7-variant13-variant18-variant22-variant26-variant27-variant28-variant30-variant32-variant35-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:161,121:282:99:4550,0,7200:69,92,50,71
chr1	214531239	.	C	T	692.19	PASS	AC=1;AF=0.567;AN=2;DP=990;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant12-variant14-variant15-variant17-variant24-variant31-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:633,0,771:13,17,13,13
chr1	214542668	.	T	C	403.28	PASS	AC=2;AF=0.789;AN=2;DP=343;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:357,24,0:0,0,8,0
chr1	214542819	.	T	C	3229.19	PASS	AC=2;AF=0.738;AN=2;DP=4674;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3569,353,0:0,0,71,47
chr1	214549501	.	C	T	502.63	PASS	AC=1;AF=0.5;AN=2;DP=329;FractionInformativeReads=1;MQ=60;set=variant7-variant18-variant22-variant26-variant30-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:588,0,821:20,7,16,2
chr1	214551276	.	G	A	271.58	PASS	AC=2;AF=0.738;AN=2;DP=968;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-filterInvariant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1219,113,0:0,0,26,12
chr1	214551626	.	C	T	369.22	PASS	AC=1;AF=0.5;AN=2;DP=253;FractionInformativeReads=1;MQ=60;set=variant7-variant18-variant22-variant26-variant30-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:511,0,373:5,9,4,12
chr1	214558228	.	A	G	463.64	PASS	AC=2;AF=0.738;AN=2;DP=803;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:821,66,0:0,0,5,17
chr1	214564177	.	C	T	1304.74	PASS	AC=1;AF=0.571;AN=2;DP=1744;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant12-variant14-variant15-variant24-variant31-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,64:124:99:1669,0,1538:40,20,42,22
chr1	214564191	.	A	C	1646.81	PASS	AC=2;AF=0.607;AN=2;DP=2146;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant12-variant14-variant15-variant24-variant31-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4652,438,0:0,0,96,50
chr1	214564340	.	T	C	5435.65	PASS	AC=2;AF=0.738;AN=2;DP=7823;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,193:195:99:5686,533,0:1,1,78,115
chr1	214566845	.	A	G	634.25	PASS	AC=2;AF=0.909;AN=2;DP=839;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:643,48,0:0,0,15,1
chr1	214566952	.	A	G	3409.81	PASS	AC=2;AF=0.75;AN=2;DP=3907;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2908,284,0:0,0,54,41
chr1	214567013	.	CG	C	4479.69	PASS	AC=2;AF=0.75;AN=2;DP=5861;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3957,382,0:0,0,66,61
chr1	214571251	.	A	C	1730.46	PASS	AC=1;AF=0.571;AN=2;DP=2590;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant23-variant24-variant26-variant28-variant31-variant32-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,57:111:99:1366,0,1268:34,20,34,23
chr1	214576133	.	C	A	606.31	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=2.623;FractionInformativeReads=1;MQ=60;MQRankSum=-1.311;QD=24.25;ReadPosRankSum=1.252;SOR=0.301;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,17:25:99:635,0,282:8,0,15,2
chr1	214625431	.	A	G	130.7	PASS	AC=1;AF=0.654;AN=2;DP=251;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant17-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,189:0,5,0,2
chr1	214638172	.	C	T	3605.3	PASS	AC=1;AF=0.826;AN=2;DP=8073;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,79:159:99:2063,0,2125:36,44,36,43
chr1	214638319	.	T	C	1047.46	PASS	AC=1;AF=0.826;AN=2;DP=1700;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:565,0,531:2,15,4,15
chr1	214638347	.	A	G	763.3	PASS	AC=1;AF=0.826;AN=2;DP=915;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:354,0,279:0,8,2,9
chr1	214638383	.	CCCCCCCCCCCA	C	448.16	PASS	AC=2;AF=0.905;AN=2;DP=435;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:315,21,0:0,0,1,6
chr1	214638396	.	C	G	237.22	PASS	AC=2;AF=0.727;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant31-variant33-variant35-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:315,21,0:0,0,1,6
chr1	214638419	.	G	T	286.77	PASS	AC=2;AF=0.929;AN=2;DP=258;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:18:270,18,0:0,0,1,4
chr1	214724413	.	G	C	440.18	PASS	AC=1;AF=0.762;AN=2;DP=1480;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:534,0,1046:13,5,11,3
chr1	214724422	.	G	T	508.04	PASS	AC=1;AF=0.762;AN=2;DP=1622;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:616,0,1037:13,5,12,5
chr1	214724722	.	G	A	452.54	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=1.228;FractionInformativeReads=1;MQ=60;MQRankSum=-0.195;QD=9.24;ReadPosRankSum=-0.031;SOR=0.999;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,19:49:99:481,0,789:10,20,5,14
chr1	214776607	.	C	G	333.8	PASS	AC=1;AF=0.5;AN=2;DP=466;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant16-variant22-variant23-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:676,0,646:15,15,12,15
chr1	214778928	.	CG	C	436.45	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=1.281;FractionInformativeReads=1;MQ=60;MQRankSum=1.009;QD=11.49;ReadPosRankSum=0.278;SOR=0.392;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:474,0,528:12,8,9,9
chr1	214779147	.	T	C	534	PASS	AC=1;AF=0.5;AN=2;DP=224;set=variant-variant4-variant22-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,16:41:99:451,0,748:12,13,10,6
chr1	214779331	.	C	T	977.37	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0.952;FractionInformativeReads=1;MQ=54.37;MQRankSum=-3.744;QD=14.59;ReadPosRankSum=1.532;SOR=0.927;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,39:67:99:1006,0,668:13,15,16,23
chr1	214779427	.	A	C	79.72	PASS	AC=1;AF=0.5;AN=2;DP=69;FractionInformativeReads=1;set=variant-variant4-variant22-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:263,0,239:2,7,0,8
chr1	214781685	.	C	T	1447.34	PASS	AC=1;AF=0.5;AN=2;DP=164;FS=1.265;FractionInformativeReads=1;MQ=58.31;MQRankSum=-0.375;QD=8.83;ReadPosRankSum=-1.64;SOR=0.854;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:102,62:164:99:1476,0,2564:52,50,34,28
chr1	214811244	.	C	G	1323.08	PASS	AC=1;AF=0.5;AN=2;DP=863;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant16-variant22-variant23-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,59:119:99:1363,0,1515:31,29,30,29
chr1	214816224	.	G	A	1313.36	PASS	AC=1;AF=0.5;AN=2;DP=856;MQ=60;set=variant-variant4-variant16-variant22-variant23-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,59:115:99:1305,0,1455:29,27,32,27
chr1	214816718	.	C	T	596.98	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.065;QD=12.7;ReadPosRankSum=0.546;SOR=0.653;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:625,0,612:7,14,9,17
chr1	214817856	.	T	C	408.25	PASS	AC=1;AF=0.5;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant15-variant25-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:298,0,309:7,5,7,5
chr1	214818223	.	T	A	1300.73	PASS	AC=1;AF=0.5;AN=2;DP=543;MQ=60;set=variant4-variant16-variant22-variant23-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,42:75:99:990,0,850:16,17,21,21
chr1	214825289	.	CT	CTT,CTTT,C	345.42	PASS	AC=1,0,0;AF=0.125,0.25,0.125;AN=2;DP=534;MQ=60;set=variant2-variant4-filterInvariant10-variant22-filterInvariant25-variant37-variant41-variant44	GT:DP:GQ:SB	0/1:35:99:6,11,5,13
chr1	214826196	.	G	A	1375.88	PASS	AC=1;AF=0.629;AN=2;DP=3626;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,35:74:99:874,0,999:23,16,17,18
chr1	214826364	.	G	A	861.04	PASS	AC=1;AF=0.613;AN=2;DP=1680;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,17:28:99:484,0,279:2,9,5,12
chr1	214826810	.	CTTT	CTT,C,CT	1793.57	PASS	AC=1,0,0;AF=0.943,0.011,0.011;AN=2;DP=4577;MQ=60;set=Intersection	GT:DP:GQ:SB	0/1:74:99:9,20,17,28
chr1	214828812	.	A	G	663.26	PASS	AC=1;AF=0.671;AN=2;DP=2677;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,25:64:99:568,0,1021:13,26,10,15
chr1	214830617	.	A	G	1058.07	PASS	AC=1;AF=0.657;AN=2;DP=3852;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,52:101:99:1281,0,1324:20,29,23,29
chr1	214837110	.	C	G	624.26	PASS	AC=1;AF=0.671;AN=2;DP=2453;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:993,0,1103:15,18,16,17
chr1	215345263	.	GTCTCTC	G	764.85	PASS	AC=2;AF=0.798;AN=2;DP=916;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,19:20:50:838,50,0:1,0,15,4
chr1	215368514	.	A	G	118.39	PASS	AC=1;AF=0.606;AN=2;DP=540;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:222,0,189:1,5,1,6
chr1	215408057	.	G	T	279.59	PASS	AC=1;AF=0.55;AN=2;DP=363;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant27-variant29-variant34-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:181,0,320:8,3,5,3
chr1	215408898	.	A	AT	2877.33	PASS	AC=1;AF=0.55;AN=2;DP=5423;MQ=60;set=variant2-variant4-variant7-variant8-variant9-variant11-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant27-variant29-variant34-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,115:232:99:2428,0,2546:52,65,51,64
chr1	215409388	.	AATCTATCT	AATCTATCTATCATCTATCTATCTATCTATCTATCT,A,AATCTATCTATCATCTATCT,AATCTATCTATCATCTATCTATCTATCTATCT,AATCTATCTATCT,AATCT,AATCTATCTATCATCTATCTATCTATCT,AATCTATCTATCATCTATCTATCT,AATCTATCTATCATCTATCTATCTATCTATCTATCTATCT,AATCTATCTATCTATCT	2590.75	PASS	AC=0,0,1,0,0,1,0,0,0,0;AF=0.023,0.058,0.221,0.047,0.128,0.151,0.07,0.07,0.012,0.012;AN=2;DP=7170;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	6/3:86:99:0,0,49,37
chr1	215410106	.	G	C	2734.7	PASS	AC=1;AF=0.774;AN=2;DP=4383;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,40:98:99:915,0,1531:28,30,18,22
chr1	215741053	.	T	G	1994.1	PASS	AC=1;AF=0.571;AN=2;DP=3814;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant21-variant27-variant29-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,91:145:99:2277,0,1220:34,20,56,35
chr1	215741226	.	A	AG	1258.95	PASS	AC=1;AF=0.5;AN=2;DP=104;FS=0;FractionInformativeReads=0.952;MQ=60;MQRankSum=-0.808;QD=12.11;ReadPosRankSum=0.29;SOR=0.721;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,50:99:99:1296,0,1277:14,35,14,36
chr1	215753355	.	T	G	1171.35	PASS	AC=1;AF=0.568;AN=2;DP=1820;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant27-variant29-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,37:69:99:985,0,819:10,22,11,26
chr1	215781574	.	A	G	825.63	PASS	AC=1;AF=0.568;AN=2;DP=764;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant27-variant29-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:305,0,365:1,10,1,8
chr1	215793834	.	G	A	2756.05	PASS	AC=1;AF=0.732;AN=2;DP=4488;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,42:97:99:987,0,1459:27,28,19,23
chr1	215796196	.	A	ATTATT	105.97	PASS	AC=1;AF=0.591;AN=2;DP=87;MQ=60;set=variant4-variant8-variant9-variant11-variant15-variant17-variant19-variant21-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:152,0,190:2,1,3,1
chr1	215798014	.	G	A	14498.8	PASS	AC=2;AF=1;AN=2;DP=20723;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,386:386:99:11866,1156,0:0,0,177,209
chr1	215814142	.	TA	T	195.51	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=0.862;MQ=60;MQRankSum=-1.341;QD=6.74;ReadPosRankSum=0.137;SOR=0.716;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:233,0,283:4,10,3,8
chr1	215814186	.	CAAA	CAA,CA,C	82.27	PASS	AC=1,0,0;AF=0.583,0.1,0.017;AN=2;DP=495;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant29-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:9:23:0,3,1,5
chr1	215848062	.	C	T	657.88	PASS	AC=1;AF=0.529;AN=2;DP=1382;MQ=60;set=variant5-variant7-variant8-variant10-variant11-variant14-variant17-variant18-variant20-variant27-variant29-variant32-variant33-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,41:78:99:1095,0,1071:14,23,20,21
chr1	215848641	.	T	C	4746.7	PASS	AC=1;AF=0.807;AN=2;DP=5820;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,64:109:99:1790,0,1331:22,23,32,32
chr1	215849044	.	C	G	162.08	PASS	AC=1;AF=0.528;AN=2;DP=361;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant10-variant11-variant14-variant17-variant18-variant20-variant27-variant29-variant32-variant33-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:231,0,187:3,4,3,5
chr1	215853748	.	GTT	GT,G	966.41	PASS	AC=1,0;AF=0.92,0.011;AN=2;DP=2679;MQ=60;set=Intersection	GT:DP:GQ:SB	0/1:47:99:4,15,10,18
chr1	215953288	.	G	T	1482.92	PASS	AC=1;AF=0.5;AN=2;DP=134;FS=2.155;FractionInformativeReads=1;MQ=60;MQRankSum=-0.639;QD=11.07;ReadPosRankSum=-2.628;SOR=0.532;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,68:134:99:1511,0,1565:30,36,34,34
chr1	215956304	.	A	G	492.05	PASS	AC=1;AF=0.653;AN=2;DP=1156;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,19:30:99:569,0,293:2,9,5,14
chr1	215960167	.	T	G	1381.73	PASS	AC=1;AF=0.653;AN=2;DP=3219;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,40:84:99:880,0,1160:14,30,14,26
chr1	215987222	.	T	C	645.25	PASS	AC=1;AF=0.5;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant8-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,22:50:99:557,0,738:9,19,6,16
chr1	216019410	.	G	A	746.64	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.939;QD=11.14;ReadPosRankSum=-1.406;SOR=0.735;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:775,0,871:14,23,11,19
chr1	216040565	.	T	C	795.29	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=1.45;FractionInformativeReads=1;MQ=60;MQRankSum=-1.422;QD=18.07;ReadPosRankSum=1.326;SOR=0.399;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,27:44:99:824,0,457:3,14,7,20
chr1	216051287	.	A	G	1700.9	PASS	AC=2;AF=0.563;AN=2;DP=2234;MQ=60;set=variant8-variant11-variant13-variant17-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,118:119:99:3877,311,0:0,1,37,81
chr1	216062505	.	TG	T	126.77	PASS	AC=1;AF=0.5;AN=2;DP=54;MQ=60;set=variant8-variant9-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:357,0,207:2,5,2,9
chr1	216107915	.	G	A	521.77	PASS	AC=1;AF=0.5;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:762,0,905:23,5,20,5
chr1	216172380	.	A	G	681.18	PASS	AC=1;AF=0.652;AN=2;DP=1898;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:544,0,445:5,13,7,14
chr1	216219781	.	A	G	673.15	PASS	AC=1;AF=0.711;AN=2;DP=2951;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,47:90:99:1122,0,969:24,19,28,19
chr1	216221721	.	C	T	620.63	PASS	AC=1;AF=0.618;AN=2;DP=1463;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:370,0,502:14,4,10,3
chr1	216246675	.	AG	A	1141.06	PASS	AC=1;AF=0.854;AN=2;DP=1996;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:561,0,562:5,14,7,12
chr1	216258213	.	A	G	376.91	PASS	AC=1;AF=0.588;AN=2;DP=513;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant14-variant16-variant17-variant24-variant25-variant28-variant30-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,22:36:99:600,0,423:2,12,8,14
chr1	216270618	.	G	A	688.73	PASS	AC=1;AF=0.588;AN=2;DP=1109;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant14-variant16-variant17-variant24-variant25-variant28-variant30-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,25:55:99:667,0,890:9,21,7,18
chr1	216348764	.	C	T	1516.97	PASS	AC=1;AF=0.614;AN=2;DP=3558;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,43:91:99:1010,0,1264:20,28,16,27
chr1	216370130	.	T	G	916.77	PASS	AC=1;AF=0.817;AN=2;DP=1067;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:329,0,578:1,16,4,9
chr1	216390694	.	C	T	1369.94	PASS	AC=1;AF=0.632;AN=2;DP=2678;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:769,0,1056:22,15,15,16
chr1	216495191	.	T	G	955.78	PASS	AC=1;AF=0.619;AN=2;DP=1265;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,26:50:99:772,0,695:18,6,20,6
chr1	216495400	.	A	G	1068.79	PASS	AC=1;AF=0.619;AN=2;DP=2228;MQ=60;set=variant-variant4-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,41:88:99:993,0,1183:18,29,15,26
chr1	216496947	.	G	A	2968.78	PASS	AC=1;AF=0.619;AN=2;DP=5112;MQ=60;set=variant-variant4-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:143,91:234:99:2219,0,3549:69,74,53,38
chr1	216500830	.	G	C	496.25	PASS	AC=1;AF=0.679;AN=2;DP=672;MQ=60;set=variant-variant4-variant6-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:397,0,241:6,1,11,3
chr1	216592168	.	T	C	295.66	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.761;QD=22.74;ReadPosRankSum=0.93;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:47:324,0,47:1,2,2,8
chr1	216676472	.	G	A	265.87	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=2.35;FractionInformativeReads=1;MQ=60;MQRankSum=0.643;QD=13.29;ReadPosRankSum=-0.416;SOR=0.148;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:294,0,351:9,1,7,3
chr1	216677350	.	C	T	5071.99	PASS	AC=1;AF=0.943;AN=2;DP=13628;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:162,114:276:99:2768,0,4210:68,94,53,61
chr1	216678866	.	G	A	736.94	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=7.247;FractionInformativeReads=1;MQ=60;MQRankSum=-0.8;QD=10.53;ReadPosRankSum=-0.438;SOR=1.614;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,23:70:99:765,0,1359:18,29,5,18
chr1	216679643	.	A	G	394.14	PASS	AC=1;AF=0.943;AN=2;DP=1917;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:325,0,605:6,15,3,9
chr1	216679807	.	G	A	240.34	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=2.218;FractionInformativeReads=1;MQ=60;MQRankSum=-0.473;QD=15.02;ReadPosRankSum=1.523;SOR=1.371;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:269,0,231:6,2,7,1
chr1	216679858	.	A	AT	100.7	PASS	AC=1;AF=0.611;AN=2;DP=734;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant16-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:359,0,155:5,3,11,4
chr1	216692669	.	C	T	4278.34	PASS	AC=2;AF=0.661;AN=2;DP=4428;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant16-variant17-variant18-variant19-variant23-variant25-variant26-variant27-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4537,439,0:0,0,79,68
chr1	217113059	.	GAA	GA,G	1986.66	PASS	AC=2,0;AF=0.75,0.045;AN=2;DP=5420;set=Intersection	GT:DP:GQ:SB	1/1:99:13:4,9,33,53
chr1	217173648	.	T	G	2290.61	PASS	AC=2;AF=0.724;AN=2;DP=2426;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2768,228,0:0,0,59,17
chr1	217174168	.	G	T	48.53	PASS	AC=2;AF=0.816;AN=2;DP=83;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant12-variant15-variant20-variant21-variant24-variant26-variant28-variant29-variant30-variant31-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:229,18,0:0,0,1,5
chr1	217262702	.	CTT	CT,C	40.37	PASS	AC=0,2;AF=0.778,0.037;AN=2;DP=213;set=variant-variant2-variant3-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant31-variant32-variant36-variant38-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	2/2:2:6:0,0,2,0
chr1	217311068	.	C	T	1768.13	PASS	AC=1;AF=0.6;AN=2;DP=585;MQ=60;set=variant2-variant7-variant10-variant15-variant22-variant29-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:574,0,516:10,13,9,19
chr1	217600228	.	G	A	419.26	PASS	AC=2;AF=0.629;AN=2;DP=730;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:45:675,45,0:0,0,13,1
chr1	217600241	.	GTA	G	472.8	PASS	AC=2;AF=0.611;AN=2;DP=264;FractionInformativeReads=1;MQ=60;set=variant2-variant14-variant21-variant22-variant29-variant31-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:892,60,0:0,0,19,1
chr1	217600781	.	C	A	289.93	PASS	AC=2;AF=0.629;AN=2;DP=1980;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1671,153,0:0,0,22,29
chr1	217603167	.	CAAAAAAAAAAAA	CAAAAAAAAA,CAAAAAAAA,CAAAAAAAAAAA,CAAAAAAAAAA,C,CAAAAAAAAAAAAA	228.73	PASS	AC=1,1,0,0,0,0;AF=0.091,0.061,0.167,0.152,0.045,0.015;AN=2;DP=1385;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-filterInvariant12-variant15-filterInvariant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant31-filterInvariant32-variant33-variant34-variant35-variant37-variant39-filterInvariant40-variant41-variant42-variant43	GT:DP:GQ:SB	2/1:20:99:0,0,19,1
chr1	217603318	.	CATA	C	2884.96	PASS	AC=2;AF=0.629;AN=2;DP=5389;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:4878,334,0:0,0,66,45
chr1	217603539	.	T	C	1945.22	PASS	AC=2;AF=0.629;AN=2;DP=6067;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,173:174:99:5396,490,0:1,0,70,103
chr1	217603884	.	C	T	4162.84	PASS	AC=2;AF=0.6;AN=2;DP=4280;MQ=60;set=variant2-variant14-variant21-variant22-variant29-variant31-variant33-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:3,304:307:99:8760,857,0:2,1,166,138
chr1	217604124	.	T	C	892.95	PASS	AC=2;AF=0.643;AN=2;DP=2537;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2146,176,0:0,0,27,32
chr1	217665204	.	CTT	CT,C	46.47	PASS	AC=0,2;AF=0.563,0.188;AN=2;DP=89;FS=0;MQ=60;set=variant-variant5-variant10-variant16-variant38-variant39-variant41-variant44	GT:DP:GQ:SB	2/2:2:6:0,0,0,2
chr1	217671771	.	C	G	1157.3	PASS	AC=1;AF=0.597;AN=2;DP=3292;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,43:86:99:1045,0,1190:18,25,23,20
chr1	217782273	.	T	C	4691.56	PASS	AC=2;AF=0.703;AN=2;DP=12452;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,307:307:99:9338,920,0:0,0,118,189
chr1	217782894	.	A	AG	4400.87	PASS	AC=1;AF=0.583;AN=2;DP=5246;MQ=60;set=variant2-variant4-variant5-variant16-variant17-variant24-variant25-variant28-variant31-variant32-variant34-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,127:287:99:4262,0,5571:88,72,73,54
chr1	217793938	.	T	TTAA	60.83	PASS	AC=2;AF=0.656;AN=2;DP=204;MQ=60;set=variant2-variant4-variant5-variant16-variant17-variant24-variant25-variant28-variant31-variant32-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:450,30,0:0,0,0,10
chr1	217804208	.	G	T	793.88	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=1.544;FractionInformativeReads=1;MQ=60;MQRankSum=-1.174;QD=6.51;ReadPosRankSum=-2.111;SOR=0.884;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:79,43:122:99:822,0,2025:46,33,27,16
chr1	217804325	.	G	A	2118.76	PASS	AC=2;AF=0.703;AN=2;DP=7529;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5194,507,0:0,0,76,94
chr1	217804555	.	C	T	1076.56	PASS	AC=1;AF=0.571;AN=2;DP=966;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant16-variant17-variant24-variant25-variant32-variant34-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,32:48:99:962,0,419:10,6,19,13
chr1	217822135	.	G	A	268.61	PASS	AC=1;AF=0.571;AN=2;DP=278;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant16-variant17-variant24-variant25-variant32-variant34-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:181,0,336:9,0,5,1
chr1	217842129	.	A	G	1065.98	PASS	AC=2;AF=0.611;AN=2;DP=1320;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant17-variant20-variant24-variant25-variant28-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1743,183,0:0,0,35,26
chr1	217856626	.	G	A	833.18	PASS	AC=2;AF=0.607;AN=2;DP=932;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant17-variant20-variant24-variant25-variant32-variant34-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1784,180,0:0,0,37,23
chr1	217856803	.	T	C	569.52	PASS	AC=2;AF=0.611;AN=2;DP=669;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant17-variant20-variant24-variant25-variant28-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:940,93,0:0,0,10,21
chr1	217947738	.	G	A	2329.71	PASS	AC=2;AF=0.825;AN=2;DP=3059;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2436,234,0:0,0,47,31
chr1	218041300	.	G	T	1279.68	PASS	AC=1;AF=0.5;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,36:80:99:1018,0,1047:24,20,21,15
chr1	218042838	.	T	C	1047.11	PASS	AC=1;AF=0.5;AN=2;DP=449;FractionInformativeReads=1;MQ=60;set=variant6-variant28-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,31:80:99:691,0,1331:30,19,19,12
chr1	218458551	.	T	C	121.67	PASS	AC=1;AF=0.611;AN=2;DP=396;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:195,0,193:5,1,5,2
chr1	218475625	.	T	A	1665.68	PASS	AC=1;AF=0.5;AN=2;DP=635;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant10-variant19-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,34:93:99:733,0,1517:36,23,20,14
chr1	218505456	.	G	GAC	5674.46	PASS	AC=1;AF=0.5;AN=2;DP=1702;MQ=60;set=variant-variant6-variant10-variant19-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:148,99:247:99:3638,0,5740:86,62,63,36
chr1	218506210	.	GAA	GA,GAAA,G	189.14	PASS	AC=0,0,1;AF=0.111,0.375,0.014;AN=2;DP=4710;set=filterInvariant-variant2-variant3-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant11-filterInvariant13-variant15-filterInvariant16-filterInvariant17-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant44	GT:DP:GQ:SB	0/3:106:99:31,25,32,18
chr1	218506526	.	G	GA	1323.46	PASS	AC=1;AF=0.5;AN=2;DP=161;FS=1.323;FractionInformativeReads=0.901;MQ=60;MQRankSum=-1.366;QD=8.22;ReadPosRankSum=-0.626;SOR=0.838;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,65:145:99:1361,0,1809:36,44,27,38
chr1	218506743	.	C	T	2440.01	PASS	AC=1;AF=0.583;AN=2;DP=1430;MQ=60;set=variant-variant6-variant10-variant19-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:107,84:191:99:2014,0,2388:45,62,33,51
chr1	218507279	.	A	G	475.94	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=1.174;FractionInformativeReads=1;MQ=60;MQRankSum=-0.012;QD=11.07;ReadPosRankSum=1.595;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:504,0,622:9,14,9,11
chr1	218509420	.	T	C	2407.86	PASS	AC=1;AF=0.5;AN=2;DP=190;FS=4.221;FractionInformativeReads=1;MQ=60;MQRankSum=-1.32;QD=12.67;ReadPosRankSum=0.639;SOR=1;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:97,93:190:99:2436,0,2577:43,54,35,58
chr1	218509591	.	AAC	AACAC,A	2057.36	PASS	AC=1,0;AF=0.192,0.308;AN=2;DP=3018;MQ=60;set=variant-filterInvariant5-variant6-filterInvariant9-variant19-filterInvariant20-filterInvariant22-filterInvariant26-filterInvariant29-filterInvariant35-variant36-variant41-filterInvariant44	GT:DP:GQ:SB	0/1:189:99:62,55,39,33
chr1	218509700	.	C	T	1244.84	PASS	AC=1;AF=0.5;AN=2;DP=184;FS=2.017;FractionInformativeReads=1;MQ=60;MQRankSum=0.003;QD=6.77;ReadPosRankSum=-0.566;SOR=0.865;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:127,57:184:99:1273,0,3375:52,75,21,36
chr1	218509829	.	C	G	978.44	PASS	AC=1;AF=0.583;AN=2;DP=458;MQ=60;set=variant-variant6-variant10-variant19-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,32:79:99:771,0,1386:18,29,15,17
chr1	218510854	.	T	C	1829.73	PASS	AC=1;AF=0.5;AN=2;DP=884;MQ=60;set=variant-variant6-variant19-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,75:155:99:1837,0,2005:35,45,38,37
chr1	218519928	.	A	AAAAC	6874.33	PASS	AC=1;AF=0.6;AN=2;DP=6171;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant19-variant22-variant25-variant28-variant32-variant35-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:132,138:270:99:5345,0,6268:67,65,68,70
chr1	218578726	.	ACT	A,ACTCT	103.37	PASS	AC=0,1;AF=0.444,0.056;AN=2;DP=323;MQ=60;set=variant-variant2-filterInvariant8-filterInvariant13-filterInvariant17-filterInvariant27-variant30-filterInvariant39-variant41	GT:DP:GQ:SB	0/2:17:99:3,8,2,4
chr1	218610662	.	CTT	CT,C	950.17	PASS	AC=1,0;AF=0.511,0.023;AN=2;DP=2780;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:49:99:11,11,16,11
chr1	218614905	.	A	T	10304.8	PASS	AC=1;AF=0.609;AN=2;DP=7259;MQ=60;set=variant-variant2-variant4-variant9-variant10-variant12-variant13-variant17-variant20-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:121,138:259:99:3476,0,3249:46,75,57,81
chr1	218615451	.	A	C	7681.89	PASS	AC=1;AF=0.609;AN=2;DP=4755;MQ=60;set=variant-variant2-variant4-variant9-variant10-variant12-variant13-variant17-variant20-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,100:178:99:2461,0,2007:31,47,47,53
chr1	218616014	.	C	T	8217.71	PASS	AC=1;AF=0.543;AN=2;DP=10356;set=variant-variant2-variant4-variant9-variant10-variant12-variant13-variant17-variant20-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:202,163:365:99:3274,0,5248:94,108,73,90
chr1	218617051	.	GTTT	GTT,GT,GTTTT,G	3025.88	PASS	AC=0,1,0,0;AF=0.081,0.339,0.177,0.016;AN=2;DP=3717;set=variant-variant2-variant4-variant6-filterInvariant7-variant9-variant10-variant12-variant13-variant17-variant18-variant20-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:96:99:35,20,28,13
chr1	218617135	.	C	G	7169.57	PASS	AC=1;AF=0.609;AN=2;DP=5737;set=variant-variant2-variant4-variant9-variant10-variant12-variant13-variant17-variant20-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:137,114:251:99:2761,0,3572:73,64,61,53
chr1	218617543	.	G	A	813.98	PASS	AC=1;AF=0.609;AN=2;DP=1003;MQ=60;set=variant-variant2-variant4-variant9-variant10-variant12-variant13-variant17-variant20-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:474,0,415:5,10,3,12
chr1	218617900	.	C	T	564.51	PASS	AC=1;AF=0.609;AN=2;DP=604;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant9-variant10-variant12-variant13-variant17-variant20-variant24-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:374,0,471:5,13,6,9
chr1	218683417	.	CT	CTTT,CTT,C	1108.05	PASS	AC=0,1,1;AF=0.036,0.464,0.071;AN=2;DP=828;MQ=60;set=variant-filterInvariant9-variant10-variant12-filterInvariant13-filterInvariant19-variant20-variant24-variant31-variant34-variant35-variant36-variant37-variant41	GT:DP:GQ:SB	3/2:26:99:0,0,10,16
chr1	218696903	.	C	T	700.51	PASS	AC=1;AF=0.5;AN=2;DP=359;FS=0;MQ=60;set=variant-variant24-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,21:55:99:508,0,806:14,20,8,13
chr1	218698632	.	CG	C	335.97	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:315,0,470:6,0,6,1
chr1	218698641	.	C	A	414.42	PASS	AC=1;AF=0.5;AN=2;DP=42;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:387,0,464:7,0,8,2
chr1	218698728	.	G	A	3204.75	PASS	AC=1;AF=0.55;AN=2;DP=832;FractionInformativeReads=1;MQ=60;set=variant-variant12-variant20-variant24-variant31-variant34-variant35-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:1021,0,885:22,15,23,9
chr1	218699059	.	TA	T,TAA	237	PASS	AC=1,0;AF=0.347,0.153;AN=2;DP=2967;set=variant-variant3-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant10-variant11-filterInvariant13-variant14-variant15-variant16-filterInvariant17-variant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-variant25-filterInvariant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-variant33-variant34-filterInvariant35-variant37-filterInvariant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:69:99:30,15,17,7
chr1	219366400	.	T	TG,TGGG,TGG	250.22	PASS	AC=1,0,0;AF=0.807,0.011,0.034;AN=2;DP=2307;set=Intersection	GT:DP:GQ:SB	0/1:46:99:19,11,13,3
chr1	219366403	.	G	GC	742.81	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=2.61;FractionInformativeReads=1;MQ=60;MQRankSum=0.374;QD=14.86;ReadPosRankSum=0.98;SOR=0.392;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,32:50:99:780,0,442:13,5,20,12
chr1	219383848	.	A	ACTTTTT	1212.07	PASS	AC=2;AF=1;AN=2;DP=1368;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:93:1386,93,0:0,0,19,9
chr1	219383867	.	T	C	1350.32	PASS	AC=2;AF=1;AN=2;DP=2134;FS=0;MQ=60;MQRankSum=-1.659;ReadPosRankSum=0.258;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1470,164,0:0,0,31,24
chr1	219383905	.	A	G	1854.71	PASS	AC=2;AF=1;AN=2;DP=2926;FS=0;MQ=60;MQRankSum=1.684;ReadPosRankSum=1.444;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2019,221,0:0,0,38,36
chr1	219385985	.	A	G	2951.61	PASS	AC=1;AF=0.536;AN=2;DP=4790;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,88:158:99:2384,0,1851:40,30,54,34
chr1	219783279	.	T	A	2241.14	PASS	AC=2;AF=0.636;AN=2;DP=8400;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:3871,400,0:0,0,45,89
chr1	219783316	.	C	T	257.74	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=2.559;FractionInformativeReads=1;MQ=31.03;MQRankSum=-1.87;QD=3.79;ReadPosRankSum=0.104;SOR=0.384;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,18:68:99:286,0,1313:13,37,6,12
chr1	220101002	.	A	C	370.59	PASS	AC=1;AF=0.5;AN=2;DP=36;FractionInformativeReads=1;set=variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,15:20:99:615,0,165:3,2,15,0
chr1	220101005	.	A	C	532	PASS	AC=1;AF=0.5;AN=2;DP=131;set=variant4-variant10-variant15-variant22-variant27-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,15:20:99:699,0,159:3,2,15,0
chr1	220101008	.	A	C	546.57	PASS	AC=2;AF=0.684;AN=2;DP=303;set=variant3-variant4-variant10-variant11-variant13-variant15-variant17-variant19-variant20-variant22-filterInvariant27-variant31-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,19:21:26:818,26,0:0,2,18,1
chr1	220101022	.	A	AC	96.67	PASS	AC=1;AF=0.684;AN=2;DP=399;set=variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant15-variant16-variant17-variant19-variant21-variant26-variant28-variant29-variant32-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,24:26:5:999,0,5:2,0,18,6
chr1	220101025	.	A	C	892.1	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=2.945;FractionInformativeReads=1;MQ=60;MQRankSum=0.384;QD=21.24;ReadPosRankSum=2.178;SOR=1.382;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,25:42:99:920,0,662:10,7,18,7
chr1	220101029	.	A	AC,AAAC,AAAAC,AAC	1445.73	PASS	AC=1,0,0,0;AF=0.333,0.125,0.125,0.083;AN=2;DP=696;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant19-variant20-variant22-variant26-variant28-variant29-variant31-variant32-variant35-variant38-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:48:99:21,8,11,8
chr1	220145371	.	T	G	445.5	PASS	AC=2;AF=0.86;AN=2;DP=907;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:788,75,0:0,0,17,8
chr1	220145637	.	A	G	852.72	PASS	AC=1;AF=0.62;AN=2;DP=471;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant33-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:355,0,299:6,8,7,9
chr1	220153306	.	C	T	162.18	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.493;QD=12.48;ReadPosRankSum=-0.377;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:190,0,187:5,2,5,1
chr1	220153332	.	T	TAA	882.2	PASS	AC=1;AF=0.841;AN=2;DP=1699;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:412,0,507:10,3,8,4
chr1	220154246	.	AT	A	92.28	PASS	AC=1;AF=0.807;AN=2;DP=1368;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:92:256,0,92:1,5,4,7
chr1	220154659	.	TAAA	T	315.43	PASS	AC=1;AF=0.841;AN=2;DP=984;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:405,0,125:4,1,9,1
chr1	220154768	.	C	T	816.15	PASS	AC=1;AF=0.645;AN=2;DP=3023;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,48:81:99:1122,0,703:17,16,25,23
chr1	220156090	.	T	C	1265.3	PASS	AC=1;AF=0.841;AN=2;DP=5276;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,43:90:99:1051,0,1183:22,25,24,19
chr1	220160360	.	A	G	672.02	PASS	AC=1;AF=0.726;AN=2;DP=976;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:518,0,405:11,2,12,4
chr1	220160433	.	A	G	1226.52	PASS	AC=2;AF=0.841;AN=2;DP=3256;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2345,213,0:0,0,47,24
chr1	220161929	.	A	G	580.2	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0.99;FractionInformativeReads=1;MQ=60;MQRankSum=-0.846;QD=8.79;ReadPosRankSum=-1.566;SOR=0.908;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,24:66:99:608,0,1730:24,18,15,9
chr1	220161934	.	T	G	1079.13	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=0.936;FractionInformativeReads=1;MQ=60;MQRankSum=-0.006;QD=15.64;ReadPosRankSum=0.823;SOR=0.579;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,43:69:99:1107,0,922:16,10,25,18
chr1	220162004	.	C	T	1134.84	PASS	AC=1;AF=0.5;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,34:77:99:760,0,1077:20,23,15,19
chr1	220162029	.	G	T	919.15	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.415;QD=12.42;ReadPosRankSum=0.841;SOR=0.793;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,40:74:99:947,0,761:17,17,21,19
chr1	220162195	.	T	C	380.31	PASS	AC=1;AF=0.732;AN=2;DP=732;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,3:16:87:87,0,371:5,8,0,3
chr1	220170238	.	C	T	679.91	PASS	AC=1;AF=0.5;AN=2;DP=147;FractionInformativeReads=1;MQ=60;set=variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,35:59:99:799,0,611:17,7,22,13
chr1	220178717	.	T	TA	726.93	PASS	AC=2;AF=0.841;AN=2;DP=2450;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1409,126,0:0,0,17,25
chr1	220179322	.	A	T	162.92	PASS	AC=1;AF=0.851;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:31:124,0,31:1,0,3,1
chr1	220184164	.	A	G,AG	672.36	PASS	AC=0,1;AF=0.69,0.103;AN=2;DP=644;set=variant18-variant20-variant21-variant22-variant23-variant2-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant3-variant33-variant34-variant4-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant5-variant43-variant44	GT:DP:GQ:SB	0/2:25:99:11,0,14,0
chr1	220191932	.	GA	GAA,GAAA,G	103.03	PASS	AC=1,0,1;AF=0.679,0.06,0.012;AN=2;DP=1124;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/1:19:81:1,1,5,12
chr1	220192171	.	T	TAAA,TAA	87.37	PASS	AC=0,1;AF=0.662,0.162;AN=2;DP=232;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:9:81:6,0,2,1
chr1	220192188	.	GT	G	231.02	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=8.113;FractionInformativeReads=0.944;MQ=60;MQRankSum=-0.439;QD=12.83;ReadPosRankSum=0.244;SOR=3.442;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:268,0,181:5,2,10,0
chr1	220192495	.	C	G	1047.96	PASS	AC=2;AF=0.841;AN=2;DP=1904;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1823,153,0:0,0,9,42
chr1	220193662	.	CAAGTT	C	244.7	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.278;QD=22.25;ReadPosRankSum=-0.278;SOR=0.399;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:282,0,249:0,4,1,6
chr1	220195651	.	C	A	675.97	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=1.234;FractionInformativeReads=1;MQ=60;MQRankSum=-1.215;QD=14.38;ReadPosRankSum=-0.755;SOR=0.973;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,18:47:99:704,0,1583:19,10,13,5
chr1	220195655	.	T	A	500.33	PASS	AC=1;AF=0.5;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,19:50:99:701,0,1616:21,10,14,5
chr1	220195682	.	T	C	794.71	PASS	AC=1;AF=0.5;AN=2;DP=90;FS=4.281;FractionInformativeReads=1;MQ=60;MQRankSum=0.087;QD=8.83;ReadPosRankSum=-0.57;SOR=1.173;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,34:90:99:823,0,1392:34,22,24,10
chr1	220197545	.	C	T	637.19	PASS	AC=1;AF=0.807;AN=2;DP=1047;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:2,11:13:51:375,0,51:2,0,8,3
chr1	220197625	.	G	T	1495.18	PASS	AC=2;AF=0.841;AN=2;DP=4207;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2454,249,0:0,0,46,37
chr1	220197663	.	C	G	1438.03	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=0.729;FractionInformativeReads=1;MQ=60;MQRankSum=0.793;QD=13.32;ReadPosRankSum=-0.136;SOR=0.573;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,61:108:99:1466,0,1099:27,20,33,28
chr1	220205693	.	G	T	407.85	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.333;QD=16.31;ReadPosRankSum=-0.19;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:436,0,468:9,4,8,4
chr1	220205705	.	A	T	327.78	PASS	AC=1;AF=0.5;AN=2;DP=117;MQ=60;set=variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:471,0,624:10,6,8,6
chr1	220205714	.	G	GA	615.5	PASS	AC=1;AF=0.5;AN=2;DP=150;MQ=60;set=variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:423,0,739:14,8,11,7
chr1	220205943	.	G	A	253.59	PASS	AC=1;AF=0.807;AN=2;DP=772;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:165,0,349:2,9,1,5
chr1	220205980	.	A	C	118.65	PASS	AC=1;AF=0.814;AN=2;DP=397;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:148,0,271:0,7,1,4
chr1	220207017	.	C	T	702.66	PASS	AC=2;AF=0.841;AN=2;DP=2295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1270,117,0:0,0,14,25
chr1	220208154	.	C	A	402.22	PASS	AC=1;AF=0.807;AN=2;DP=1974;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:708,0,728:17,5,18,3
chr1	220230785	.	A	G	76.48	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=3.01;FractionInformativeReads=1;MQ=60;MQRankSum=0.573;QD=8.5;ReadPosRankSum=-0.248;SOR=1.911;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:105,0,201:4,2,3,0
chr1	220231447	.	G	A	1419.25	PASS	AC=2;AF=0.909;AN=2;DP=1906;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1402,117,0:0,0,29,10
chr1	220239448	.	T	C	2566.75	PASS	AC=1;AF=0.881;AN=2;DP=3560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,48:92:99:1108,0,1020:18,26,20,28
chr1	220263074	.	G	T	504.33	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.53;QD=10.73;ReadPosRankSum=-1.68;SOR=0.7;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:533,0,765:16,10,13,8
chr1	220267599	.	C	T	2860.3	PASS	AC=1;AF=0.5;AN=2;DP=218;FS=1.096;FractionInformativeReads=1;MQ=60;MQRankSum=-1.602;QD=13.12;ReadPosRankSum=1.406;SOR=0.779;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:106,112:218:99:2889,0,2750:69,37,75,37
chr1	220284112	.	GT	GTT,G	351.72	PASS	AC=0,1;AF=0.1,0.4;AN=2;DP=257;MQ=60;set=variant2-variant33-variant35-variant39-variant41	GT:DP:GQ:SB	0/2:56:99:17,9,21,9
chr1	220298664	.	A	G	2311.23	PASS	AC=1;AF=0.5;AN=2;DP=633;FractionInformativeReads=1;MQ=60;set=variant33-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,59:131:99:1458,0,1795:33,39,21,38
chr1	220322080	.	C	CT	1486.55	PASS	AC=1;AF=0.5;AN=2;DP=174;FS=0.586;FractionInformativeReads=0.954;MQ=60;MQRankSum=-0.875;QD=8.54;ReadPosRankSum=-2.043;SOR=0.758;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:95,71:166:99:1524,0,2222:56,39,43,28
chr1	220323089	.	C	A	2958.28	PASS	AC=1;AF=0.5;AN=2;DP=851;MQ=60;set=variant33-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:115,84:199:99:2172,0,3176:62,53,50,34
chr1	220323448	.	CTT	CT,C,CTTT	1489.64	PASS	AC=1,1,0;AF=0.5,0.058,0.012;AN=2;DP=6726;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	2/1:89:99:3,5,16,65
chr1	220323793	.	CTT	CT,CTTT,C	441.22	PASS	AC=1,0,0;AF=0.4,0.05,0.088;AN=2;DP=4385;set=variant-variant2-variant3-variant4-filterInvariant6-variant7-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:69:51:8,4,27,30
chr1	220324889	.	C	G	1632.43	PASS	AC=1;AF=0.5;AN=2;DP=130;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.36;QD=12.56;ReadPosRankSum=-1.625;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,65:130:99:1661,0,1580:39,26,39,26
chr1	220327444	.	AG	A	369.52	PASS	AC=1;AF=0.5;AN=2;DP=167;MQ=60;set=variant33-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,29:43:99:797,0,296:4,10,10,19
chr1	220332552	.	C	T	305.58	PASS	AC=2;AF=0.586;AN=2;DP=602;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant24-variant25-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:579,45,0:0,0,13,2
chr1	220332835	.	T	TA	151.45	PASS	AC=2;AF=0.667;AN=2;DP=41;MQ=60;set=variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:413,39,0:0,0,1,12
chr1	220345860	.	C	T	277.55	PASS	AC=1;AF=0.5;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant33-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:484,0,513:14,3,13,3
chr1	220355433	.	CT	C	146.56	PASS	AC=2;AF=0.857;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant13-variant25-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:112,9,0:0,0,3,0
chr1	220373777	.	T	C	512.68	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.847;QD=10.05;ReadPosRankSum=-1.522;SOR=0.583;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:541,0,735:18,12,12,9
chr1	220406054	.	T	C	650.93	PASS	AC=1;AF=0.5;AN=2;DP=600;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant12-variant17-variant22-variant29-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,39:77:99:990,0,978:25,13,25,14
chr1	220406291	.	A	G	884.49	PASS	AC=2;AF=0.643;AN=2;DP=865;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:785,66,0:0,0,6,16
chr1	220427661	.	C	T	4721.26	PASS	AC=1;AF=0.5;AN=2;DP=2558;set=variant4-variant8-variant12-variant17-variant22-variant29-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,125:286:99:3090,0,3953:78,83,63,62
chr1	220427746	.	C	G	2658.47	PASS	AC=1;AF=0.5;AN=2;DP=188;FS=4.597;FractionInformativeReads=0.995;MQ=59.84;MQRankSum=0.676;QD=14.14;ReadPosRankSum=0.739;SOR=0.435;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:86,101:187:99:2687,0,2396:24,62,35,66
chr1	220603310	.	TGTGA	T	948.83	PASS	AC=1;AF=0.795;AN=2;DP=2013;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:386,0,606:13,2,10,4
chr1	220603314	.	A	T	244.38	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=1.84;FractionInformativeReads=0.622;MQ=60;MQRankSum=2.81;QD=5.43;ReadPosRankSum=0.092;SOR=1.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:273,0,562:11,4,11,2
chr1	220607685	.	G	A	1654.53	PASS	AC=1;AF=0.943;AN=2;DP=3396;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:782,0,1090:12,26,17,19
chr1	220607891	.	A	G	1047.69	PASS	AC=1;AF=0.977;AN=2;DP=1979;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:614,0,921:21,10,15,7
chr1	220789236	.	C	T	1848.96	PASS	AC=2;AF=1;AN=2;DP=2840;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1594,182,0:0,0,30,31
chr1	220789362	.	T	A	226.77	PASS	AC=2;AF=0.949;AN=2;DP=860;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:248,24,0:0,0,0,8
chr1	220808666	.	CTTT	CTT,CT,C	258.57	PASS	AC=1,0,0;AF=0.317,0.183,0.017;AN=2;DP=786;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:31:99:7,1,15,8
chr1	220808921	.	T	C	2811.34	PASS	AC=2;AF=0.838;AN=2;DP=3562;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3086,288,0:0,0,36,60
chr1	220825377	.	G	C	1415.45	PASS	AC=1;AF=0.5;AN=2;DP=113;FS=2.487;FractionInformativeReads=1;MQ=60;MQRankSum=-0.589;QD=12.53;ReadPosRankSum=2.541;SOR=0.985;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,56:113:99:1444,0,1410:33,24,36,20
chr1	220825523	.	A	G	3859.31	PASS	AC=2;AF=0.838;AN=2;DP=4848;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4029,389,0:0,0,49,81
chr1	220837352	.	G	T	3924.38	PASS	AC=1;AF=0.5;AN=2;DP=363;FS=0.795;FractionInformativeReads=0.997;MQ=60;MQRankSum=2.875;QD=10.81;ReadPosRankSum=-0.64;SOR=0.64;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:200,162:362:99:3953,0,5122:96,104,80,82
chr1	220870326	.	G	A	984.89	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=7.18;FractionInformativeReads=1;MQ=60;MQRankSum=0.031;QD=11.59;ReadPosRankSum=-1.88;SOR=1.228;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,40:85:99:1013,0,1119:24,21,15,25
chr1	220870508	.	C	T	269.28	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=1.447;FractionInformativeReads=1;MQ=60;MQRankSum=0.742;QD=9.29;ReadPosRankSum=0.382;SOR=0.998;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:298,0,505:8,10,4,7
chr1	220870579	.	C	T	97.9	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=6.021;FractionInformativeReads=1;MQ=60;MQRankSum=1.302;QD=5.76;ReadPosRankSum=-0.283;SOR=1.447;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,4:17:99:126,0,393:4,9,3,1
chr1	220871123	.	A	G	802.26	PASS	AC=1;AF=0.647;AN=2;DP=1077;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant14-variant20-variant26-variant32-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:995,0,749:17,13,21,14
chr1	220871320	.	T	C	736.81	PASS	AC=1;AF=0.647;AN=2;DP=1456;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant14-variant20-variant26-variant32-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,33:81:99:933,0,1274:21,27,16,17
chr1	220872415	.	C	T	5537.63	PASS	AC=1;AF=0.5;AN=2;DP=353;FS=2.306;FractionInformativeReads=1;MQ=60;MQRankSum=1.757;QD=15.69;ReadPosRankSum=1.462;SOR=0.581;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:142,211:353:99:5566,0,3424:63,79,100,111
chr1	220921909	.	C	T	746.56	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=4.344;FractionInformativeReads=1;MQ=60;MQRankSum=0.135;QD=17.36;ReadPosRankSum=-2.727;SOR=1.22;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,24:43:99:775,0,618:9,10,15,9
chr1	220921945	.	G	C	1058.67	PASS	AC=1;AF=0.714;AN=2;DP=403;FractionInformativeReads=1;set=variant8-variant20-variant26-variant35-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,27:48:99:837,0,659:16,5,18,9
chr1	220922168	.	G	A	1812.59	PASS	AC=1;AF=0.5;AN=2;DP=132;FS=2.31;FractionInformativeReads=0.977;MQ=60;MQRankSum=-1.163;QD=13.73;ReadPosRankSum=0.619;SOR=0.479;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,78:129:99:1841,0,1172:21,30,37,41
chr1	220922198	.	CG	CGG,C	712.15	PASS	AC=1,0;AF=0.417,0.083;AN=2;DP=553;MQ=60;set=variant-variant6-variant9-variant14-variant34-variant41	GT:DP:GQ:SB	0/1:68:99:16,22,8,22
chr1	220927511	.	G	A	270.73	PASS	AC=2;AF=0.6;AN=2;DP=109;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant14-variant34-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:840,60,0:0,0,17,3
chr1	220928376	.	T	C	1469.01	PASS	AC=1;AF=0.5;AN=2;DP=389;MQ=60;set=variant9-variant20-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,62:104:99:1366,0,844:22,20,30,32
chr1	220934839	.	C	G	110.26	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=3.31;FractionInformativeReads=1;MQ=60;MQRankSum=1.447;QD=11.03;ReadPosRankSum=-1.568;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:138,0,160:4,2,4,0
chr1	220934856	.	A	G	111.61	PASS	AC=1;AF=0.5;AN=2;DP=39;FractionInformativeReads=1;MQ=60;set=variant9-variant20-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:134,0,131:4,2,4,0
chr1	220935081	.	G	A	1249.06	PASS	AC=1;AF=0.714;AN=2;DP=704;FractionInformativeReads=1;MQ=60;set=variant8-variant20-variant26-variant35-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,48:82:99:1131,0,875:18,16,24,24
chr1	220936420	.	A	G	1327.31	PASS	AC=1;AF=0.5;AN=2;DP=227;FractionInformativeReads=1;MQ=60;set=variant9-variant20-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,31:63:99:772,0,809:15,17,13,18
chr1	220960137	.	C	G	1863.73	PASS	AC=1;AF=0.5;AN=2;DP=930;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant14-variant34-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,69:138:99:1813,0,1697:32,37,34,35
chr1	220965086	.	G	C	929.45	PASS	AC=1;AF=0.5;AN=2;DP=855;MQ=60;set=variant-variant5-variant6-variant9-variant14-variant20-variant32-variant34-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,25:64:99:699,0,1108:15,24,7,18
chr1	220970028	.	A	G	1535.21	PASS	AC=2;AF=0.763;AN=2;DP=3418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2549,243,0:0,0,37,44
chr1	220971048	.	G	T	118.87	PASS	AC=1;AF=0.563;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant9-variant10-variant12-variant16-variant17-variant18-variant19-variant22-variant27-variant28-variant30-variant31-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:297,0,219:6,2,8,2
chr1	220978659	.	G	A	244.31	PASS	AC=1;AF=0.583;AN=2;DP=185;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant13-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:424,0,784:8,17,3,10
chr1	220987155	.	A	G	1650.04	PASS	AC=1;AF=0.85;AN=2;DP=2386;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:679,0,695:9,15,9,10
chr1	220987469	.	C	G,T	1493.78	PASS	AC=0,1;AF=0.438,0.063;AN=2;DP=912;MQ=60;set=variant12-variant19-variant27-variant29-variant30-variant32-variant38-variant41	GT:DP:GQ:SB	0/2:111:99:34,29,27,21
chr1	221051713	.	C	G	775.97	PASS	AC=1;AF=0.536;AN=2;DP=700;MQ=60;set=variant9-variant11-variant12-variant13-variant18-variant23-variant25-variant30-variant33-variant34-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,31:61:99:803,0,620:16,14,18,13
chr1	221052101	.	T	G	1811.83	PASS	AC=2;AF=0.966;AN=2;DP=2636;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2142,206,0:0,0,38,31
chr1	221052457	.	C	G	269.91	PASS	AC=1;AF=0.588;AN=2;DP=752;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant10-variant13-variant16-variant19-variant20-variant24-variant31-variant32-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:478,0,656:13,9,8,9
chr1	221052640	.	T	C	1032.56	PASS	AC=2;AF=0.795;AN=2;DP=1353;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1536,141,0:0,0,27,20
chr1	221052765	.	A	G	922.64	PASS	AC=2;AF=0.625;AN=2;DP=2124;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3706,265,0:0,0,42,46
chr1	221052769	.	GT	G,GTT	1056.22	PASS	AC=2,0;AF=0.603,0.017;AN=2;DP=2209;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:79:99:1,0,35,43
chr1	221052789	.	CT	C	1043.18	PASS	AC=2;AF=0.625;AN=2;DP=2270;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3063,236,0:0,0,36,45
chr1	221052931	.	G	T	289.47	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=1.309;FractionInformativeReads=1;MQ=60;MQRankSum=-1.076;QD=8.27;ReadPosRankSum=-0.05;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:318,0,487:8,11,8,8
chr1	221052937	.	A	C	1128.19	PASS	AC=2;AF=0.795;AN=2;DP=1645;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1313,102,0:0,0,14,20
chr1	221054379	.	A	G	646.89	PASS	AC=1;AF=0.5;AN=2;DP=75;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:487,0,594:13,5,12,2
chr1	221054735	.	T	A	1257.97	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=2.763;FractionInformativeReads=1;MQ=60;MQRankSum=-1.447;QD=11.76;ReadPosRankSum=-0.36;SOR=0.422;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,49:107:99:1286,0,1525:16,42,17,32
chr1	221054817	.	A	G	682.28	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=7.597;FractionInformativeReads=1;MQ=60;MQRankSum=0.172;QD=11.37;ReadPosRankSum=-2.663;SOR=1.721;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,26:60:99:711,0,940:14,20,6,20
chr1	221055463	.	G	A	854.13	PASS	AC=2;AF=0.625;AN=2;DP=3685;MQ=60;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3946,377,0:0,0,67,59
chr1	221057646	.	C	T	2997.63	PASS	AC=2;AF=0.625;AN=2;DP=6206;set=variant-variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant23-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:6517,561,0:0,0,91,95
chr1	221057662	.	G	A	2783.67	PASS	AC=1;AF=0.588;AN=2;DP=3507;MQ=60;set=variant-variant2-variant5-variant6-variant10-variant13-variant16-variant19-variant20-variant24-variant31-variant32-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:90,88:178:99:2152,0,2164:46,44,41,47
chr1	221058059	.	C	T	2379.84	PASS	AC=1;AF=0.536;AN=2;DP=2917;MQ=60;set=variant9-variant11-variant12-variant13-variant18-variant23-variant25-variant30-variant33-variant34-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,98:212:99:2288,0,2840:54,60,40,58
chr1	221058846	.	T	C	855.86	PASS	AC=1;AF=0.536;AN=2;DP=822;MQ=60;set=variant9-variant11-variant12-variant13-variant18-variant23-variant25-variant30-variant33-variant34-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,37:65:99:867,0,822:16,12,20,17
chr1	221507141	.	C	T	1544.46	PASS	AC=2;AF=1;AN=2;DP=2137;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1031,99,0:0,0,18,15
chr1	221874824	.	AT	A	41.34	PASS	AC=2;AF=0.833;AN=2;DP=66;MQ=60;set=variant8-variant10-variant11-variant20-variant21-variant22-variant24-variant25-variant27-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:131,15,0:0,0,5,0
chr1	221876126	.	A	G	446.83	PASS	AC=1;AF=0.565;AN=2;DP=841;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,27:39:99:689,0,302:3,9,10,17
chr1	221912242	.	A	G	272.33	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.241;QD=16.02;ReadPosRankSum=1.876;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:301,0,233:7,1,8,1
chr1	221912361	.	T	C	749.44	PASS	AC=2;AF=0.814;AN=2;DP=2550;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1776,159,0:0,0,33,20
chr1	221913315	.	T	G	370.28	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=9.031;FractionInformativeReads=1;MQ=60;MQRankSum=0.705;QD=23.14;ReadPosRankSum=0.597;SOR=3.797;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:399,0,161:2,4,0,10
chr1	222645528	.	A	G	106.77	PASS	AC=1;AF=0.912;AN=2;DP=175;FractionInformativeReads=1;set=variant-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:135,0,117:2,3,3,1
chr1	222645539	.	T	C	106.77	PASS	AC=2;AF=1;AN=2;DP=193;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:216,18,0:0,0,4,2
chr1	222645619	.	G	A	37.74	PASS	AC=1;AF=0.5;AN=2;DP=106;set=variant2-variant8-variant13-variant14-variant18-variant28-variant33-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:234,0,134:3,3,6,2
chr1	222646927	.	G	A	437.49	PASS	AC=1;AF=0.5;AN=2;DP=190;FractionInformativeReads=1;set=variant2-variant8-variant13-variant14-variant18-variant20-variant28-variant29-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:93:117,0,93:3,1,2,3
chr1	222646986	.	A	G	98.32	PASS	AC=2;AF=0.977;AN=2;DP=617;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:369,33,0:0,0,5,6
chr1	222649341	.	A	C	147.54	PASS	AC=2;AF=1;AN=2;DP=558;FS=0;FractionInformativeReads=1;MQRankSum=0.496;ReadPosRankSum=-0.744;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,13:14:32:415,32,0:0,1,10,3
chr1	222649491	.	C	G	472.94	PASS	AC=1;AF=0.603;AN=2;DP=865;set=variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,17:25:99:429,0,198:5,3,8,9
chr1	222650113	.	G	A	1244.17	PASS	AC=1;AF=0.5;AN=2;DP=1406;FractionInformativeReads=1;set=variant2-variant8-variant13-variant14-variant18-variant20-variant28-variant33-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,63:120:99:1651,0,1567:29,28,25,38
chr1	222650329	.	C	T	263.05	PASS	AC=1;AF=0.63;AN=2;DP=737;FractionInformativeReads=1;set=filterInvariant2-variant4-variant6-filterInvariant8-filterInvariant10-variant11-variant13-filterInvariant14-variant15-filterInvariant18-filterInvariant20-filterInvariant21-variant26-filterInvariant28-variant29-filterInvariant30-filterInvariant32-filterInvariant34-filterInvariant35-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:21,10:31:99:228,0,530:8,13,2,8
chr1	222650534	.	T	C	268.59	PASS	AC=2;AF=0.676;AN=2;DP=1068;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:848,81,0:0,0,7,20
chr1	222697088	.	G	A	805.29	PASS	AC=1;AF=0.568;AN=2;DP=2347;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant16-variant19-variant22-variant24-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,38:95:99:924,0,1360:27,30,17,21
chr1	222700416	.	C	T	1040.63	PASS	AC=1;AF=0.565;AN=2;DP=2968;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant16-variant19-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,43:111:99:920,0,1746:32,36,21,22
chr1	222705270	.	T	C	1135.07	PASS	AC=1;AF=0.578;AN=2;DP=2216;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:796,0,576:15,12,19,12
chr1	222705546	.	G	A	173.88	PASS	AC=1;AF=0.586;AN=2;DP=360;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:162,0,110:0,3,2,4
chr1	222712354	.	C	T	253.61	PASS	AC=1;AF=0.56;AN=2;DP=752;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant16-variant17-variant19-variant22-variant24-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:405,0,337:8,8,5,11
chr1	222713208	.	G	A	155.35	PASS	AC=1;AF=0.56;AN=2;DP=437;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant16-variant17-variant19-variant22-variant24-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:224,0,460:12,3,7,1
chr1	222713503	.	C	G	1794.83	PASS	AC=1;AF=0.56;AN=2;DP=4617;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant16-variant17-variant19-variant22-variant24-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,113:215:99:2864,0,2435:52,50,48,65
chr1	222713631	.	G	C	721.95	PASS	AC=1;AF=0.56;AN=2;DP=3171;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant12-variant16-variant17-variant19-variant22-variant24-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,57:132:99:1437,0,1971:42,33,27,30
chr1	222713750	.	G	A	596.63	PASS	AC=1;AF=0.578;AN=2;DP=2397;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,36:85:99:844,0,1387:17,32,15,21
chr1	222721288	.	C	T	2543.54	PASS	AC=1;AF=0.688;AN=2;DP=3940;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,40:88:99:1152,0,1259:25,23,18,22
chr1	222736498	.	C	T	449.73	PASS	AC=2;AF=0.536;AN=2;DP=738;MQ=60;set=variant2-variant3-variant4-variant8-variant13-variant18-variant20-variant34-variant35-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2010,191,0:0,0,42,22
chr1	222736778	.	T	G	87.2	PASS	AC=2;AF=0.542;AN=2;DP=142;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant8-variant13-variant18-variant20-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:534,36,0:0,0,0,12
chr1	222737265	.	G	T	625.25	PASS	AC=2;AF=1;AN=2;DP=1112;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:559,51,0:0,0,12,5
chr1	222737568	.	C	T	221.49	PASS	AC=2;AF=1;AN=2;DP=561;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:371,30,0:0,0,1,9
chr1	222743062	.	C	T	202.12	PASS	AC=1;AF=0.5;AN=2;DP=31;FractionInformativeReads=1;MQ=60;set=variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:99:132,0,333:4,8,0,4
chr1	222750744	.	C	T	83.94	PASS	AC=1;AF=0.5;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant8-variant18-variant20-variant34-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:383,0,249:8,2,11,1
chr1	222751034	.	T	C	1656.56	PASS	AC=1;AF=0.788;AN=2;DP=2135;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,30:46:99:863,0,417:5,11,10,20
chr1	222753212	.	A	C	741.17	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=3.369;FractionInformativeReads=1;MQ=60;MQRankSum=-1.457;QD=10.02;ReadPosRankSum=-2.487;SOR=1.209;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,31:74:99:769,0,1060:17,26,9,22
chr1	222763215	.	C	G	593.04	PASS	AC=2;AF=0.531;AN=2;DP=789;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant13-variant18-variant20-variant29-variant34-variant35-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1441,155,0:0,0,21,31
chr1	222763235	.	T	G	1478.84	PASS	AC=2;AF=0.802;AN=2;DP=1633;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1042,108,0:0,0,14,22
chr1	222763249	.	C	T	650.58	PASS	AC=2;AF=0.989;AN=2;DP=1402;FS=0;MQ=60;MQRankSum=0.442;ReadPosRankSum=0.442;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:831,78,0:0,0,9,17
chr1	222791646	.	C	T	2413.17	PASS	AC=1;AF=0.5;AN=2;DP=1364;MQ=60;set=variant4-variant5-variant18-variant20-variant34-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,60:135:99:1367,0,1682:33,42,23,37
chr1	222794455	.	T	A	817.66	PASS	AC=1;AF=0.5;AN=2;DP=681;MQ=60;set=variant4-variant9-variant18-variant20-variant31-variant34-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,36:82:99:884,0,1098:26,20,21,15
chr1	222798106	.	G	A	4120.33	PASS	AC=2;AF=1;AN=2;DP=5171;FS=0;MQ=60;MQRankSum=-0.751;ReadPosRankSum=1.334;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:3711,388,0:0,0,59,71
chr1	222802006	.	A	G	1971.42	PASS	AC=2;AF=1;AN=2;DP=3686;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2359,224,0:0,0,36,39
chr1	222802376	.	A	G	1740.09	PASS	AC=1;AF=0.528;AN=2;DP=2536;MQ=60;set=variant3-variant4-variant9-variant10-variant14-variant15-variant18-variant20-variant24-variant25-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,55:121:99:1433,0,1728:26,40,22,33
chr1	222802926	.	C	T	2818.59	PASS	AC=1;AF=0.898;AN=2;DP=3977;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:39,43:82:99:1035,0,923:23,16,22,21
chr1	222803204	.	A	G	2061.76	PASS	AC=1;AF=0.528;AN=2;DP=2141;MQ=60;set=variant3-variant4-variant9-variant10-variant14-variant15-variant18-variant20-variant24-variant25-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,55:101:99:1496,0,1167:25,21,29,26
chr1	222805698	.	T	G	1256.4	PASS	AC=1;AF=0.528;AN=2;DP=1148;MQ=60;set=variant3-variant4-variant9-variant10-variant14-variant15-variant18-variant20-variant24-variant25-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,34:69:99:896,0,909:13,22,15,19
chr1	222823738	.	GT	G	364.27	PASS	AC=1;AF=0.5;AN=2;DP=742;MQ=60;set=variant3-variant4-variant9-variant10-variant14-variant15-variant18-variant20-variant24-variant25-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,23:31:99:486,0,108:3,5,7,16
chr1	222825403	.	G	A	1159.26	PASS	AC=2;AF=0.989;AN=2;DP=1688;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:922,87,0:0,0,11,18
chr1	222825761	.	G	A	1023.06	PASS	AC=2;AF=0.989;AN=2;DP=2548;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2155,198,0:0,0,21,45
chr1	222833601	.	T	C	3355.75	PASS	AC=2;AF=1;AN=2;DP=4532;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2413,230,0:0,0,43,34
chr1	222837594	.	G	A	1195.04	PASS	AC=1;AF=0.784;AN=2;DP=1831;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:639,0,634:4,17,7,17
chr1	222837608	.	G	A	546.31	PASS	AC=1;AF=0.5;AN=2;DP=260;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant13-variant29-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:540,0,452:1,12,4,14
chr1	222838216	.	C	T	2969.91	PASS	AC=2;AF=0.989;AN=2;DP=3855;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2318,231,0:0,0,31,46
chr1	222839838	.	A	G	8720.25	PASS	AC=1;AF=0.898;AN=2;DP=12288;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:100,120:220:99:3281,0,2638:35,65,38,82
chr1	222840043	.	T	TGGG,TGGGG	936.21	PASS	AC=1,1;AF=0.898,0.091;AN=2;DP=1456;MQ=60;set=Intersection	GT:DP:GQ:SB	1/2:28:99:0,0,25,3
chr1	222841152	.	C	CTTAT	7336.17	PASS	AC=1;AF=0.5;AN=2;DP=5331;MQ=60;set=variant3-variant4-variant9-variant10-variant14-variant15-variant18-variant20-variant24-variant25-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,122:233:99:4848,0,5775:65,46,79,43
chr1	222860734	.	C	T	147.98	PASS	AC=2;AF=1;AN=2;DP=320;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,3,0
chr1	222876705	.	CA	C	48.29	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=0.583;MQ=60;MQRankSum=-0.937;QD=4.02;ReadPosRankSum=0.55;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:42:86,0,42:0,3,1,3
chr1	222886119	.	A	G	10601.2	PASS	AC=1;AF=0.795;AN=2;DP=16270;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:183,192:375:99:4583,0,4666:95,88,101,91
chr1	222900373	.	G	C	133.49	PASS	AC=1;AF=0.55;AN=2;DP=69;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant13-variant29-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:33:81,0,33:1,0,2,0
chr1	222906416	.	T	TC	476.06	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=1.413;FractionInformativeReads=0.958;MQ=60;MQRankSum=-2.087;QD=9.92;ReadPosRankSum=0.461;SOR=0.346;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:513,0,409:4,19,6,17
chr1	222906418	.	C	T	485.19	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=3.303;FractionInformativeReads=1;MQ=60;MQRankSum=-0.524;QD=11.28;ReadPosRankSum=-0.377;SOR=0.283;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,23:43:99:513,0,409:3,17,6,17
chr1	222919748	.	G	A	247.51	PASS	AC=1;AF=0.838;AN=2;DP=350;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:141,0,150:4,0,4,0
chr1	222919854	.	CCT	C	872.68	PASS	AC=1;AF=0.545;AN=2;DP=316;MQ=60;set=variant2-variant5-variant7-variant8-variant13-variant17-variant29-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:468,0,531:10,2,9,3
chr1	222923351	.	A	G	1800.59	PASS	AC=1;AF=0.807;AN=2;DP=3244;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,38:71:99:949,0,729:16,17,18,20
chr1	222923839	.	A	G	2473.48	PASS	AC=1;AF=0.841;AN=2;DP=3334;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:38,29:67:99:675,0,985:24,14,18,11
chr1	223116240	.	G	A	2872.03	PASS	AC=1;AF=0.5;AN=2;DP=1826;MQ=60;set=variant9-variant12-variant21-variant22-variant29-variant30-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:102,109:211:99:2845,0,2772:48,54,49,60
chr1	223152868	.	G	A	1082.3	PASS	AC=2;AF=0.989;AN=2;DP=1189;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:924,78,0:0,0,21,5
chr1	223156280	.	C	CT,CTT	72.77	PASS	AC=0,1;AF=0.033,0.633;AN=2;DP=133;FS=0;MQ=60;set=variant2-variant11-variant15-variant16-variant17-variant18-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant39-variant41	GT:DP:GQ:SB	0/2:6:58:2,0,4,0
chr1	223156382	.	C	T	2214.62	PASS	AC=2;AF=1;AN=2;DP=2570;FS=0;MQ=60;MQRankSum=1.253;ReadPosRankSum=0.879;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1557,150,0:0,0,31,19
chr1	223168213	.	T	C	1153.41	PASS	AC=1;AF=0.6;AN=2;DP=951;MQ=60;set=variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:383,0,423:11,6,11,6
chr1	223177574	.	A	G	1470.88	PASS	AC=1;AF=0.571;AN=2;DP=2947;MQ=60;set=variant-variant2-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,48:98:99:1306,0,1452:25,25,27,21
chr1	223283910	.	A	G	3751.74	PASS	AC=2;AF=1;AN=2;DP=4090;FS=0;MQ=60;MQRankSum=1.591;ReadPosRankSum=1.704;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2887,269,0:0,0,55,35
chr1	223285042	.	G	A	824.38	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=1.007;FractionInformativeReads=1;MQ=60;MQRankSum=0.359;QD=14.46;ReadPosRankSum=2.961;SOR=0.518;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:853,0,761:16,13,14,14
chr1	223532570	.	T	C	1237.87	PASS	AC=1;AF=0.558;AN=2;DP=2122;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant36-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,33:88:99:820,0,1328:21,34,12,21
chr1	223537285	.	CA	C,CAA	101.87	PASS	AC=1,0;AF=0.485,0.015;AN=2;DP=2174;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant9-variant11-variant13-variant15-variant17-variant18-variant19-filterInvariant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant44	GT:DP:GQ:SB	0/1:41:99:14,10,8,9
chr1	223537385	.	A	G	3787.22	PASS	AC=2;AF=0.872;AN=2;DP=6148;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3627,379,0:0,0,66,61
chr1	223537580	.	G	C	434.59	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.207;QD=18.11;ReadPosRankSum=2.731;SOR=0.776;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,17:24:99:463,0,210:2,5,5,12
chr1	223566737	.	G	C	849.66	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=1.894;FractionInformativeReads=1;MQ=60;MQRankSum=0.525;QD=10.76;ReadPosRankSum=1.721;SOR=0.465;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:878,0,919:25,14,23,17
chr1	223566859	.	T	C	786.23	PASS	AC=1;AF=0.5;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant12-variant18-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:927,0,1211:24,27,18,21
chr1	223567267	.	C	T	1292.04	PASS	AC=1;AF=0.5;AN=2;DP=393;MQ=60;set=variant12-variant18-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,45:82:99:1082,0,867:19,18,24,21
chr1	223567282	.	T	G	878.04	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=1.764;FractionInformativeReads=1;MQ=60;MQRankSum=0.537;QD=9.87;ReadPosRankSum=0.953;SOR=0.476;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,37:89:99:906,0,1290:30,22,19,18
chr1	223568849	.	T	C	553.16	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=1.392;FractionInformativeReads=1;MQ=60;MQRankSum=1.254;QD=14.18;ReadPosRankSum=-2.803;SOR=0.458;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:581,0,520:4,14,6,15
chr1	223712682	.	C	A	575.91	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.967;QD=12.8;ReadPosRankSum=-1.422;SOR=0.701;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:604,0,519:14,7,16,8
chr1	223714950	.	G	A	356.06	PASS	AC=2;AF=0.878;AN=2;DP=877;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:650,63,0:0,0,14,7
chr1	223715248	.	GT	G	949.48	PASS	AC=1;AF=0.697;AN=2;DP=3493;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,45:93:99:1405,0,1492:24,24,22,23
chr1	223716349	.	G	A	1338.7	PASS	AC=1;AF=0.854;AN=2;DP=4364;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,55:103:99:1437,0,1281:29,19,36,19
chr1	223717379	.	A	C	895.26	PASS	AC=2;AF=1;AN=2;DP=2319;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1310,137,0:0,0,26,20
chr1	223717484	.	G	A	515.84	PASS	AC=1;AF=0.829;AN=2;DP=3343;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,45:77:99:1137,0,855:16,16,26,19
chr1	223718462	.	G	A	103.44	PASS	AC=1;AF=0.829;AN=2;DP=1536;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:847,0,644:16,8,16,13
chr1	223718518	.	C	A	377.71	PASS	AC=1;AF=0.829;AN=2;DP=2959;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,41:75:99:968,0,956:21,13,22,19
chr1	223718651	.	G	A	1045.79	PASS	AC=1;AF=0.684;AN=2;DP=3903;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,33:76:99:751,0,1186:17,26,13,20
chr1	223718670	.	G	A	1155.94	PASS	AC=1;AF=0.684;AN=2;DP=3749;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,34:75:99:820,0,1079:17,24,14,20
chr1	223722646	.	T	TA	120.04	PASS	AC=1;AF=0.842;AN=2;DP=533;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:98:177,0,98:5,1,4,5
chr1	223722780	.	G	A	554.78	PASS	AC=1;AF=0.684;AN=2;DP=2714;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,38:67:99:927,0,757:16,13,22,16
chr1	223724567	.	G	A	623.04	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.061;QD=20.1;ReadPosRankSum=2.535;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:651,0,414:1,11,2,17
chr1	223799857	.	C	T	1206.46	PASS	AC=2;AF=0.711;AN=2;DP=6593;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5437,533,0:0,0,94,84
chr1	223799871	.	C	T	1373.02	PASS	AC=1;AF=0.684;AN=2;DP=6723;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,86:169:99:2061,0,2054:43,40,42,44
chr1	223804095	.	C	T	31.42	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.573;QD=3.49;ReadPosRankSum=-0.248;SOR=0.283;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:60:60,0,244:0,6,0,3
chr1	223804932	.	A	T	537.67	PASS	AC=1;AF=0.684;AN=2;DP=989;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:404,0,251:8,5,11,4
chr1	223804973	.	C	CT,CTT	113.71	PASS	AC=1,0;AF=0.438,0.094;AN=2;DP=572;MQ=60;set=variant4-variant5-variant12-variant14-variant16-variant21-variant23-variant25-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant41	GT:DP:GQ:SB	0/1:27:99:10,4,7,6
chr1	223804982	.	TG	T,TGG,TTTGG,TTGG,TGGG	427.89	PASS	AC=0,0,0,1,0;AF=0.421,0.053,0.158,0.053,0.026;AN=2;DP=781;MQ=60;set=variant-variant2-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant3-variant19-variant24-variant26-variant27-variant28-variant38-variant41-variant44	GT:DP:GQ:SB	0/4:32:99:9,6,11,6
chr1	223805032	.	T	TTTTG	1199.53	PASS	AC=1;AF=0.684;AN=2;DP=2821;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,26:66:99:1013,0,1599:23,17,12,14
chr1	223805231	.	T	G	1875.73	PASS	AC=2;AF=0.711;AN=2;DP=4498;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3921,359,0:0,0,60,60
chr1	223805308	.	G	A	2423.89	PASS	AC=1;AF=0.5;AN=2;DP=362;FractionInformativeReads=1;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:85,98:183:99:2422,0,2180:45,40,53,45
chr1	223805504	.	T	C	808.97	PASS	AC=2;AF=0.711;AN=2;DP=2558;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2261,192,0:0,0,20,44
chr1	223805804	.	C	T	1148.18	PASS	AC=1;AF=0.607;AN=2;DP=1340;MQ=60;set=variant-variant2-variant6-variant8-variant11-variant12-variant15-variant16-variant18-variant24-variant26-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,51:93:99:1399,0,1102:25,17,27,24
chr1	223805961	.	A	G	1112.69	PASS	AC=1;AF=0.5;AN=2;DP=124;FS=2.348;FractionInformativeReads=1;MQ=60;MQRankSum=0.379;QD=8.97;ReadPosRankSum=-0.41;SOR=0.498;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:74,50:124:99:1141,0,1869:30,44,23,27
chr1	223810318	.	G	A	1518.83	PASS	AC=1;AF=0.654;AN=2;DP=2905;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant19-variant22-variant23-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,38:106:99:857,0,1775:40,28,23,15
chr1	223813586	.	G	T	1154.33	PASS	AC=2;AF=0.733;AN=2;DP=2894;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2214,224,0:0,0,30,45
chr1	223814671	.	A	T	1246.44	PASS	AC=2;AF=0.733;AN=2;DP=1602;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1724,153,0:0,0,35,16
chr1	223815575	.	G	A	108.47	PASS	AC=2;AF=0.75;AN=2;DP=1421;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1303,111,0:0,0,25,12
chr1	223816322	.	A	G	921.14	PASS	AC=2;AF=0.75;AN=2;DP=4219;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2973,282,0:0,0,52,42
chr1	223816347	.	A	G	793.88	PASS	AC=2;AF=0.75;AN=2;DP=4264;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2986,279,0:0,0,48,45
chr1	223830348	.	C	T	271.61	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=2.774;FractionInformativeReads=1;MQ=60;MQRankSum=0.761;QD=20.89;ReadPosRankSum=0.423;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:94:300,0,94:3,0,7,3
chr1	223841836	.	C	T	213.36	PASS	AC=1;AF=0.5;AN=2;DP=275;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant9-variant12-variant19-variant23-variant27-variant28-variant29-variant33-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,249:6,2,2,1
chr1	223841877	.	C	G	358.28	PASS	AC=1;AF=0.5;AN=2;DP=582;FractionInformativeReads=1;set=variant2-variant4-variant5-variant7-variant9-variant12-variant13-variant18-variant19-variant23-variant27-variant28-variant29-variant33-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:113,0,419:11,4,3,2
chr1	223853440	.	A	G	996.69	PASS	AC=2;AF=1;AN=2;DP=1683;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1112,107,0:0,0,12,24
chr1	223900408	.	C	G	9068.64	PASS	AC=2;AF=1;AN=2;DP=15689;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,334:334:99:9786,1000,0:0,0,183,151
chr1	223905532	.	G	A	2095.33	PASS	AC=1;AF=0.821;AN=2;DP=4198;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,49:97:99:1204,0,1094:22,26,22,27
chr1	223931626	.	A	G	454.26	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.293;QD=13.36;ReadPosRankSum=-0.673;SOR=0.591;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:482,0,454:12,4,13,5
chr1	223931648	.	T	C	1625.51	PASS	AC=2;AF=1;AN=2;DP=2020;FS=0;MQ=60;MQRankSum=1.33;ReadPosRankSum=1.652;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1489,135,0:0,0,30,15
chr1	223932792	.	C	T	68.15	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=4.961;FractionInformativeReads=1;MQ=60;MQRankSum=-0.146;QD=2.52;ReadPosRankSum=0.846;SOR=0.117;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,6:27:96:96,0,657:16,5,3,3
chr1	223932894	.	C	G	706.83	PASS	AC=1;AF=0.5;AN=2;DP=468;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant18-variant23-variant32-variant33-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,25:55:99:682,0,918:16,14,17,8
chr1	223933079	.	C	T	1300.96	PASS	AC=1;AF=0.5;AN=2;DP=1139;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant18-variant23-variant32-variant33-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,58:106:99:1486,0,1239:21,27,23,35
chr1	223934720	.	G	A	5105.78	PASS	AC=1;AF=0.898;AN=2;DP=9016;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:118,107:225:99:2593,0,2887:62,56,55,52
chr1	223938565	.	A	C	1784.77	PASS	AC=2;AF=0.625;AN=2;DP=4508;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant12-variant13-variant14-variant18-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4552,444,0:0,0,80,68
chr1	223939594	.	C	G	267.11	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=2.392;FractionInformativeReads=1;MQ=60;MQRankSum=-0.241;QD=15.71;ReadPosRankSum=0.337;SOR=1.552;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:295,0,252:6,2,8,1
chr1	223944173	.	T	C	812.39	PASS	AC=1;AF=0.5;AN=2;DP=508;MQ=60;set=variant8-variant14-variant18-variant23-variant32-variant33-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,21:52:99:546,0,879:19,12,15,6
chr1	223951841	.	T	C	2534.66	PASS	AC=1;AF=0.588;AN=2;DP=6293;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,81:150:99:1920,0,1713:42,27,47,34
chr1	223953933	.	A	G	319.9	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=2.702;FractionInformativeReads=1;MQ=60;MQRankSum=0.342;QD=18.82;ReadPosRankSum=-1.61;SOR=1.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:348,0,180:5,2,9,1
chr1	223954016	.	G	A	1023.46	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=3.302;FractionInformativeReads=1;MQ=60;MQRankSum=0.497;QD=14.21;ReadPosRankSum=-1.752;SOR=1.119;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,39:72:99:1052,0,875:20,13,27,12
chr1	223959498	.	C	G	541.95	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=2.365;FractionInformativeReads=1;MQ=60;MQRankSum=1.07;QD=10.63;ReadPosRankSum=-1.959;SOR=1.047;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:570,0,766:16,12,15,8
chr1	223959796	.	G	A	991.09	PASS	AC=2;AF=0.577;AN=2;DP=920;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant18-variant22-variant23-variant24-variant29-variant31-variant32-variant33-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2232,207,0:0,0,30,39
chr1	223962929	.	G	A	2218.61	PASS	AC=2;AF=0.638;AN=2;DP=2001;MQ=60;set=variant-variant8-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2190,200,0:0,0,24,43
chr1	223963041	.	C	G	378.47	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=1.412;FractionInformativeReads=1;MQ=60;MQRankSum=0.85;QD=12.21;ReadPosRankSum=-1.127;SOR=1.112;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:407,0,500:8,8,6,9
chr1	223963443	.	C	T	785.77	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=2.751;FractionInformativeReads=1;MQ=60;MQRankSum=-0.988;QD=17.86;ReadPosRankSum=0.061;SOR=0.356;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,28:44:99:814,0,440:11,5,16,12
chr1	223967953	.	C	T	2830	PASS	AC=1;AF=0.538;AN=2;DP=3089;set=variant8-variant14-variant18-variant22-variant23-variant24-variant29-variant31-variant32-variant33-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:105,119:224:99:3036,0,2632:40,65,51,68
chr1	223980207	.	G	C	1433.04	PASS	AC=2;AF=0.571;AN=2;DP=738;FractionInformativeReads=1;MQ=60;set=variant14-variant22-variant24-variant29-variant31-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,93:94:99:2753,235,0:0,1,47,46
chr1	223984306	.	GA	G,GAA	104.53	PASS	AC=0,2;AF=0.083,0.667;AN=2;DP=55;MQ=60;set=variant-variant22-variant24-variant29-variant39-variant41	GT:DP:GQ:SB	2/2:5:15:0,0,0,5
chr1	223989738	.	A	G	753.49	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=0.895;FractionInformativeReads=1;MQ=60;MQRankSum=-2.208;QD=10.61;ReadPosRankSum=-1.17;SOR=0.582;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,33:71:99:782,0,994:23,15,19,14
chr1	223989966	.	C	T	1376	PASS	AC=2;AF=0.571;AN=2;DP=1077;MQ=60;set=variant14-variant22-variant24-variant29-variant31-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4157,412,0:0,0,66,72
chr1	223994469	.	T	C	93.6	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.537;QD=4.46;ReadPosRankSum=0.537;SOR=0.655;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,5:21:99:122,0,482:12,4,4,1
chr1	224008913	.	G	A	722.29	PASS	AC=2;AF=0.571;AN=2;DP=362;FractionInformativeReads=1;MQ=60;set=variant14-variant22-variant24-variant29-variant31-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1456,123,0:0,0,32,9
chr1	224302047	.	C	T	3299.11	PASS	AC=1;AF=0.75;AN=2;DP=215;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.069;ReadPosRankSum=-1.256;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,46:105:99:937,0,1505:33,26,25,21
chr1	224302154	.	T	TGAG	997.54	PASS	AC=2;AF=1;AN=2;DP=2537;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2348,168,0:0,0,17,38
chr1	224318151	.	T	TTTG	2042.05	PASS	AC=2;AF=1;AN=2;DP=1619;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:99:1600,114,0:0,0,24,8
chr1	224321984	.	C	T	1504.42	PASS	AC=2;AF=1;AN=2;DP=2147;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.555;ReadPosRankSum=1.2;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1436,123,0:0,0,11,30
chr1	224345012	.	G	A	667.58	PASS	AC=2;AF=1;AN=2;DP=1141;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:956,78,0:0,0,21,5
chr1	224345793	.	T	C	7967.27	PASS	AC=1;AF=0.75;AN=2;DP=536;MQ=60;MQRankSum=-1.121;ReadPosRankSum=-1.895;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:137,149:286:99:3901,0,3526:63,74,76,73
chr1	224345873	.	C	CT	3580.47	PASS	AC=1;AF=0.5;AN=2;DP=3825;set=variant-variant2-variant5-variant7-variant10-variant11-variant20-variant25-variant29-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:122,120:242:99:2591,0,2686:63,59,51,69
chr1	224347291	.	G	A	5087.87	PASS	AC=1;AF=0.988;AN=2;DP=5158;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,70:139:99:1712,0,1774:30,39,34,36
chr1	224347391	.	C	T	6427.51	PASS	AC=1;AF=0.988;AN=2;DP=6510;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,68:138:99:1716,0,1765:35,35,37,31
chr1	224347433	.	C	T	8514.41	PASS	AC=2;AF=1;AN=2;DP=9806;FS=0;MQ=60;MQRankSum=-0.293;ReadPosRankSum=0.18;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:5911,609,0:0,0,109,95
chr1	224347654	.	C	A	10256.5	PASS	AC=1;AF=0.75;AN=2;DP=633;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:164,140:304:99:3487,0,4610:89,75,74,66
chr1	224347918	.	G	C	15904.7	PASS	AC=1;AF=0.988;AN=2;DP=15575;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:181,153:334:99:3742,0,4466:78,103,76,77
chr1	224348506	.	A	G	14660.4	PASS	AC=2;AF=1;AN=2;DP=15919;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,304:304:99:9408,910,0:0,0,140,164
chr1	224348700	.	T	C	12643.2	PASS	AC=1;AF=0.988;AN=2;DP=13228;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,140:256:99:3814,0,2857:61,55,70,70
chr1	224348827	.	A	G	12976.5	PASS	AC=1;AF=0.988;AN=2;DP=13193;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,143:278:99:3279,0,3266:62,73,66,77
chr1	224348915	.	A	G	6720.86	PASS	AC=1;AF=0.988;AN=2;DP=7971;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,82:170:99:2566,0,2498:38,50,33,49
chr1	224349047	.	A	T	17653.2	PASS	AC=1;AF=0.75;AN=2;DP=797;MQ=60;MQRankSum=2.953;ReadPosRankSum=0.21;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:205,191:396:99:4736,0,5137:126,79,110,81
chr1	224349721	.	G	A	6016.92	PASS	AC=1;AF=0.75;AN=2;DP=351;FractionInformativeReads=1;MQ=60;MQRankSum=-1.134;ReadPosRankSum=-1.531;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:90,78:168:99:2111,0,2559:31,59,29,49
chr1	224349849	.	GT	G	1294.88	PASS	AC=1;AF=0.75;AN=2;DP=72;FS=0;MQ=60;MQRankSum=0.665;ReadPosRankSum=0.589;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:376,0,508:2,16,1,13
chr1	224380234	.	A	G	2465.09	PASS	AC=1;AF=0.5;AN=2;DP=1775;MQ=60;set=variant3-variant4-variant6-variant8-variant9-variant16-variant17-variant23-variant29-variant31-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,71:124:99:1782,0,1353:24,29,35,36
chr1	224380478	.	A	G	267.67	PASS	AC=1;AF=0.5;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant8-variant9-variant16-variant17-variant23-variant29-variant31-variant32-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:111,0,136:2,3,2,3
chr1	224381107	.	C	T	3134.21	PASS	AC=1;AF=0.5;AN=2;DP=2797;MQ=60;set=variant3-variant4-variant6-variant8-variant9-variant16-variant17-variant23-variant29-variant31-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:114,73:187:99:1817,0,2766:56,58,34,39
chr1	224418830	.	G	A	85.48	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;QD=21.37;ReadPosRankSum=0.727;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:59:114,0,59:1,0,2,1
chr1	224418834	.	CA	C,CAA	56.9	PASS	AC=1,0;AF=0.333,0.167;AN=2;DP=24;MQ=60;set=variant19-variant37-variant41	GT:DP:GQ:SB	0/1:4:59:1,0,2,1
chr1	224444628	.	C	T	3305.16	PASS	AC=1;AF=0.977;AN=2;DP=4453;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:63,44:107:99:966,0,1476:37,26,24,20
chr1	224444901	.	G	C	129.73	PASS	AC=2;AF=1;AN=2;DP=246;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:100,9,0:0,0,0,3
chr1	224468816	.	A	G	518.07	PASS	AC=1;AF=0.5;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,19:52:99:467,0,891:20,13,13,6
chr1	224468986	.	CGT	CGTGTGTGT,CGTGT,CGTGTGT,C	310.05	PASS	AC=0,0,0,1;AF=0.047,0.469,0.188,0.016;AN=2;DP=876;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-filterInvariant19-variant21-variant22-variant8-variant23-variant6-variant25-variant27-variant29-variant30-variant20-variant32-variant34-variant35-variant36-variant24-variant38-filterInvariant-variant40-variant41	GT:DP:GQ:SB	0/4:14:98:0,6,1,7
chr1	224482216	.	T	C	1018.5	PASS	AC=1;AF=0.932;AN=2;DP=1035;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:314,0,256:0,7,6,7
chr1	224484350	.	T	C	530.53	PASS	AC=1;AF=0.5;AN=2;DP=124;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:659,0,831:16,19,12,17
chr1	224484410	.	C	A	202.87	PASS	AC=1;AF=0.5;AN=2;DP=120;MQ=60;set=variant11-variant12-variant18-variant29-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:380,0,493:5,11,3,11
chr1	224488315	.	T	C	969.18	PASS	AC=1;AF=0.5;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,40:86:99:844,0,1024:20,26,20,20
chr1	224489364	.	T	C	46.75	PASS	AC=1;AF=0.5;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.231;QD=9.35;ReadPosRankSum=-1.231;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,80:1,2,0,2
chr1	224491264	.	T	A	573.32	PASS	AC=2;AF=1;AN=2;DP=860;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:562,39,0:0,0,13,0
chr1	224492381	.	C	T	1524.39	PASS	AC=2;AF=1;AN=2;DP=2155;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1236,120,0:0,0,27,13
chr1	224492746	.	C	T	4419.33	PASS	AC=1;AF=0.943;AN=2;DP=6274;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:63,63:126:99:1623,0,1478:37,26,32,31
chr1	224495629	.	T	C	167.28	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:111,0,245:6,0,4,0
chr1	224495852	.	C	T	4023.93	PASS	AC=1;AF=0.943;AN=2;DP=5355;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,54:108:99:1273,0,1445:26,28,28,26
chr1	224500874	.	A	AC	40.67	PASS	AC=2;AF=1;AN=2;DP=2;FS=0;FractionInformativeReads=1;MQ=60;QD=20.34;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:78,6,0:0,0,1,1
chr1	224505570	.	T	TAA	1818.86	PASS	AC=2;AF=1;AN=2;DP=2023;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:90:1324,90,0:0,0,14,15
chr1	224505719	.	T	G	283.54	PASS	AC=2;AF=1;AN=2;DP=241;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:276,24,0:0,0,2,6
chr1	224513984	.	C	T	69.11	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=5.441;FractionInformativeReads=1;MQ=60;MQRankSum=-0.495;QD=4.94;ReadPosRankSum=0.636;SOR=0.033;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:97:97,0,402:10,0,3,1
chr1	224514275	.	G	A	322.54	PASS	AC=2;AF=1;AN=2;DP=499;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:395,30,0:0,0,1,9
chr1	224517842	.	C	T	2060.99	PASS	AC=1;AF=0.943;AN=2;DP=5295;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:46,55:101:99:1334,0,1100:22,24,30,25
chr1	224517907	.	A	T	1443.27	PASS	AC=1;AF=0.943;AN=2;DP=3901;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,37:63:99:1041,0,611:10,16,16,21
chr1	224518074	.	T	C	572.45	PASS	AC=1;AF=0.943;AN=2;DP=1414;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:453,0,457:9,10,7,11
chr1	224518143	.	T	C	180.3	PASS	AC=2;AF=0.977;AN=2;DP=418;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:366,30,0:0,0,2,8
chr1	224544529	.	A	G	3274.98	PASS	AC=1;AF=0.825;AN=2;DP=4886;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,60:118:99:1833,0,1719:41,17,46,14
chr1	224548374	.	C	T	201.12	PASS	AC=1;AF=0.5;AN=2;DP=43;FractionInformativeReads=1;MQ=60;set=variant29-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:276,0,183:1,5,0,7
chr1	224564135	.	G	T	1532.93	PASS	AC=1;AF=0.5;AN=2;DP=154;FS=2.097;FractionInformativeReads=1;MQ=60;MQRankSum=-1.221;QD=9.95;ReadPosRankSum=1.064;SOR=0.521;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:88,66:154:99:1561,0,2337:32,56,27,39
chr1	224564241	.	G	A	924.93	PASS	AC=1;AF=0.5;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant18-variant29-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:957,0,828:15,14,9,20
chr1	224564970	.	C	T	752.25	PASS	AC=1;AF=0.5;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant18-variant29-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,12:36:99:348,0,635:12,12,5,7
chr1	224565178	.	C	T	42.2	PASS	AC=1;AF=0.667;AN=2;DP=111;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant15-variant18-variant24-variant26-variant29-variant31-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:37:81,0,37:0,1,0,2
chr1	224565489	.	T	G	865.3	PASS	AC=1;AF=0.5;AN=2;DP=182;FractionInformativeReads=1;MQ=60;set=variant18-variant29-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:765,0,708:17,5,20,3
chr1	224565769	.	T	A	808.27	PASS	AC=1;AF=0.5;AN=2;DP=120;MQ=60;set=variant29-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:542,0,634:6,18,3,15
chr1	224566039	.	C	T	968.09	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=0.864;FractionInformativeReads=1;MQ=60;MQRankSum=-1.185;QD=9.78;ReadPosRankSum=-2.882;SOR=0.897;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,39:99:99:996,0,1752:42,18,29,10
chr1	224567004	.	G	A	989.51	PASS	AC=1;AF=0.825;AN=2;DP=1381;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:269,0,148:2,4,3,5
chr1	224573601	.	C	T	3261.69	PASS	AC=1;AF=0.611;AN=2;DP=4965;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant23-variant24-variant26-variant29-variant31-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:122,126:248:99:3796,0,3269:67,55,68,58
chr1	224574972	.	C	G	2625.78	PASS	AC=1;AF=0.5;AN=2;DP=1426;MQ=60;set=variant-variant6-variant16-variant18-variant27-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,87:173:99:2216,0,2150:38,48,33,54
chr1	224575373	.	G	A	6836.53	PASS	AC=1;AF=0.955;AN=2;DP=6902;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:68,64:132:99:1782,0,1942:35,33,33,31
chr1	224575831	.	C	CT	2667.01	PASS	AC=1;AF=0.825;AN=2;DP=2677;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,21:54:99:584,0,1011:20,13,11,10
chr1	224575874	.	C	A	982.3	PASS	AC=1;AF=0.5;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant18-variant29-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,44:84:99:1107,0,1055:25,15,27,17
chr1	224575943	.	A	T	1588.81	PASS	AC=1;AF=0.5;AN=2;DP=152;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.542;QD=10.45;ReadPosRankSum=-0.697;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:82,70:152:99:1617,0,2264:48,34,41,29
chr1	224585958	.	A	C	731.6	PASS	AC=1;AF=0.611;AN=2;DP=1131;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant23-variant24-variant26-variant29-variant31-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,21:59:99:398,0,1067:15,23,8,13
chr1	224586334	.	A	G	1026.89	PASS	AC=1;AF=0.5;AN=2;DP=302;FractionInformativeReads=1;MQ=60;set=variant18-variant29-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,23:59:99:560,0,860:17,19,14,9
chr1	224586499	.	G	A	496.31	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=4.172;FractionInformativeReads=1;MQ=60;MQRankSum=0.535;QD=21.58;ReadPosRankSum=-0.157;SOR=1.711;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:525,0,285:4,5,10,4
chr1	224588825	.	T	A	250.4	PASS	AC=1;AF=0.639;AN=2;DP=200;MQ=60;set=variant2-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant23-variant24-variant26-variant29-variant31-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:164,0,184:3,5,1,5
chr1	224600910	.	C	A	2558.04	PASS	AC=2;AF=0.909;AN=2;DP=3701;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:4,54:58:99:1545,114,0:1,3,28,26
chr1	224600920	.	C	A	2613.74	PASS	AC=2;AF=0.989;AN=2;DP=3778;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2760,219,0:0,0,33,39
chr1	224606249	.	C	G	61.77	PASS	AC=1;AF=0.917;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.067;ReadPosRankSum=0.572;set=variant26-variant29-variant31-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:48:165,0,48:0,2,2,4
chr1	224621368	.	G	C	2445.47	PASS	AC=2;AF=1;AN=2;DP=3707;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2623,240,0:0,0,51,29
chr1	224621906	.	C	CGGA	1657.15	PASS	AC=1;AF=0.619;AN=2;DP=2535;set=variant2-variant3-variant7-variant10-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant28-variant29-variant33-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,31:84:99:1208,0,2125:27,26,17,14
chr1	224868596	.	A	C	1671.38	PASS	AC=1;AF=0.542;AN=2;DP=1522;MQ=60;set=variant4-variant7-variant8-variant11-variant12-variant13-variant23-variant26-variant30-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,51:114:99:1243,0,1596:35,28,27,24
chr1	224872443	.	A	G	2270.1	PASS	AC=1;AF=0.538;AN=2;DP=2245;MQ=60;set=variant4-variant7-variant8-variant11-variant12-variant13-variant19-variant23-variant26-variant30-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,88:184:99:1915,0,2275:51,45,46,42
chr1	224872473	.	A	G	2580.28	PASS	AC=1;AF=0.542;AN=2;DP=2418;MQ=60;set=variant4-variant7-variant8-variant11-variant12-variant13-variant23-variant26-variant30-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,95:202:99:2233,0,2516:56,51,52,43
chr1	225117103	.	T	G	6732.88	PASS	AC=2;AF=1;AN=2;DP=222;FS=0;FractionInformativeReads=1;MQ=60;QD=30.33;SOR=1.357;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,222:222:99:6761,665,0:0,0,140,82
chr1	225117222	.	G	A	9365.69	PASS	AC=2;AF=1;AN=2;DP=313;FS=0;FractionInformativeReads=0.994;MQ=60;MQRankSum=2.205;QD=29.92;ReadPosRankSum=1.14;SOR=0.977;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:2,309:311:99:9394,876,0:1,1,135,174
chr1	225117561	.	T	C	2558.37	PASS	AC=2;AF=0.577;AN=2;DP=2575;MQ=60;set=variant2-variant3-variant4-variant8-variant13-variant14-variant15-variant16-variant17-variant25-variant30-variant32-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,171:171:99:5400,512,0:0,0,64,107
chr1	225147810	.	T	C	609.24	PASS	AC=2;AF=1;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;QD=29.94;SOR=4.174;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:637,48,0:0,0,15,1
chr1	225155114	.	A	T	336.46	PASS	AC=2;AF=0.583;AN=2;DP=208;MQ=60;set=variant2-variant8-variant14-filterInvariant16-variant17-variant41	GT:AD:DP:GQ:PL:SB	1/1:2,36:38:64:1078,64,0:1,1,25,11
chr1	225156738	.	T	C	412.97	PASS	AC=2;AF=1;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;QD=30.14;SOR=3.442;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:441,33,0:0,0,1,10
chr1	225162034	.	G	T	740.43	PASS	AC=2;AF=1;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;QD=33.66;SOR=2.737;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:769,66,0:0,0,4,18
chr1	225239186	.	A	G	418.49	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.978;QD=8.21;ReadPosRankSum=0.723;SOR=0.757;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,20:51:99:447,0,789:18,13,12,8
chr1	225270475	.	G	T	1185.93	PASS	AC=2;AF=1;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;QD=30;SOR=2.753;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1214,81,0:0,0,5,22
chr1	225270476	.	A	T	1185.93	PASS	AC=2;AF=1;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;QD=33.55;SOR=2.753;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1214,81,0:0,0,5,22
chr1	225305529	.	C	T	1036.14	PASS	AC=2;AF=0.75;AN=2;DP=175;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.167;ReadPosRankSum=0.084;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2812,261,0:0,0,39,48
chr1	225306675	.	A	C	54.21	PASS	AC=2;AF=0.75;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;ReadPosRankSum=0.727;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:389,33,0:0,0,9,2
chr1	225328426	.	T	C	316.11	PASS	AC=2;AF=1;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;QD=31.61;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:344,30,0:0,0,8,2
chr1	225334801	.	A	T	942.61	PASS	AC=2;AF=1;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.391;QD=30.41;ReadPosRankSum=0.056;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:1,30:31:47:971,47,0:1,0,23,7
chr1	225335028	.	A	AT	701.79	PASS	AC=2;AF=0.571;AN=2;DP=302;MQ=60;set=variant2-variant8-variant14-variant16-variant17-variant18-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1130,105,0:0,0,9,26
chr1	225341687	.	A	G	338.88	PASS	AC=1;AF=0.5;AN=2;DP=143;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant14-variant16-variant17-variant19-variant26-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:244,0,102:1,3,3,6
chr1	225439988	.	T	C	1391.04	PASS	AC=1;AF=0.587;AN=2;DP=2690;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant29-variant30-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,34:106:99:788,0,1931:36,36,16,18
chr1	225445652	.	G	T	346.79	PASS	AC=1;AF=0.591;AN=2;DP=519;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant29-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:284,0,337:9,5,6,6
chr1	225460626	.	T	A	179.24	PASS	AC=1;AF=0.583;AN=2;DP=516;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:350,0,277:8,1,12,3
chr1	225477807	.	A	G	320.86	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.184;QD=16.89;ReadPosRankSum=3.062;SOR=0.804;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:349,0,309:1,8,1,9
chr1	225492710	.	C	T	665.06	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.514;QD=8.87;ReadPosRankSum=-1.39;SOR=0.69;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,30:75:99:693,0,1085:21,24,14,16
chr1	225525864	.	C	G	1305.26	PASS	AC=1;AF=0.5;AN=2;DP=105;FS=3.595;FractionInformativeReads=1;MQ=60;MQRankSum=-0.952;QD=12.43;ReadPosRankSum=-1.414;SOR=0.794;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,51:105:99:1333,0,1452:29,25,23,28
chr1	225528183	.	C	A	3139.64	PASS	AC=1;AF=0.643;AN=2;DP=2807;set=variant-variant2-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,49:86:99:1198,0,847:22,15,29,20
chr1	225533684	.	A	G	1852.57	PASS	AC=1;AF=0.643;AN=2;DP=1911;MQ=60;set=variant-variant2-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,19:58:99:462,0,1033:22,17,12,7
chr1	225534219	.	T	C	4200.39	PASS	AC=1;AF=0.643;AN=2;DP=3226;MQ=60;set=variant-variant2-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,55:109:99:1230,0,1331:26,28,24,31
chr1	225534324	.	T	C	599.65	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.122;QD=14.99;ReadPosRankSum=-0.582;SOR=0.511;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:628,0,1084:6,14,7,13
chr1	225534348	.	G	A	1494.63	PASS	AC=1;AF=0.643;AN=2;DP=1012;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:459,0,957:4,11,3,9
chr1	225539665	.	T	A	729.81	PASS	AC=1;AF=0.708;AN=2;DP=549;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:188,0,267:0,8,1,5
chr1	225545301	.	A	AATATGTGATAT	52.26	PASS	AC=1;AF=0.821;AN=2;DP=48;FS=0;MQ=60;set=variant2-variant3-variant10-variant11-variant13-variant16-variant19-variant21-variant28-variant29-variant32-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:117,0,319:3,0,3,0
chr1	225545580	.	A	C	2057.04	PASS	AC=1;AF=0.583;AN=2;DP=1485;MQ=60;set=variant2-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant32-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,38:68:99:1081,0,756:9,21,11,27
chr1	225546172	.	C	G	835.68	PASS	AC=1;AF=0.583;AN=2;DP=407;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant32-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:92:92,0,356:9,0,3,1
chr1	225552624	.	G	A	724.18	PASS	AC=1;AF=0.63;AN=2;DP=859;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant32-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:349,0,505:10,12,6,9
chr1	225552650	.	C	T	565.24	PASS	AC=1;AF=0.63;AN=2;DP=699;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant32-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:255,0,426:5,10,4,7
chr1	225589473	.	C	T	1530.49	PASS	AC=2;AF=0.625;AN=2;DP=1276;MQ=60;set=variant2-variant12-variant16-variant18-variant21-variant30-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4784,437,0:0,0,94,52
chr1	225611661	.	C	T	3024.8	PASS	AC=2;AF=0.875;AN=2;DP=3398;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2602,264,0:0,0,53,35
chr1	225611845	.	C	T	1309.29	PASS	AC=2;AF=0.776;AN=2;DP=1294;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1102,87,0:0,0,6,23
chr1	225615566	.	G	C	1397.97	PASS	AC=2;AF=0.897;AN=2;DP=1821;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1144,99,0:0,0,22,11
chr1	225680555	.	C	CATTT	3049.93	PASS	AC=2;AF=1;AN=2;DP=2404;FS=0;MQ=60;MQRankSum=0.668;ReadPosRankSum=0.911;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2409,162,0:0,0,44,8
chr1	225680980	.	A	C	8292.94	PASS	AC=2;AF=0.955;AN=2;DP=10360;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,232:232:99:7354,695,0:0,0,118,114
chr1	225682175	.	C	T	10938.2	PASS	AC=2;AF=0.917;AN=2;DP=16361;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,353:353:99:11002,1055,0:0,0,192,161
chr1	225682560	.	G	A	2525.13	PASS	AC=2;AF=0.833;AN=2;DP=3117;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2413,225,0:0,0,28,47
chr1	225683158	.	GTT	GTTTT,GTTTTT,G,GTTTTTT,GTTT,GT	2314.66	PASS	AC=1,0,0,0,0,0;AF=0.452,0.06,0.06,0.012,0.024,0.012;AN=2;DP=11650;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:112:99:31,11,8,62
chr1	225683359	.	T	C	117.12	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=2.276;FractionInformativeReads=1;MQ=60;MQRankSum=0.696;QD=9.01;ReadPosRankSum=1.256;SOR=0.799;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:145,0,319:5,3,2,3
chr1	225685621	.	TAAG	T	1248	PASS	AC=2;AF=0.833;AN=2;DP=1549;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1484,100,0:0,0,6,27
chr1	225707271	.	GAAA	GAA,GAAAA,GA,G	62.11	PASS	AC=1,0,0,0;AF=0.325,0.125,0.025,0.025;AN=2;DP=669;MQ=60;set=filterInvariant2-filterInvariant3-variant5-variant6-variant8-variant11-variant12-variant13-variant14-variant16-variant19-filterInvariant20-filterInvariant21-variant24-variant28-filterInvariant30-variant33-variant35-variant37-variant41	GT:DP:GQ:SB	0/1:31:99:7,12,6,6
chr1	225965803	.	C	A	1483.67	PASS	AC=2;AF=0.55;AN=2;DP=1391;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant18-variant19-variant23-variant25-variant27-variant32-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4378,430,0:0,0,57,87
chr1	225974486	.	T	TG	1080.13	PASS	AC=2;AF=0.732;AN=2;DP=2194;MQ=60;set=variant2-variant3-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant21-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3464,280,0:0,0,53,40
chr1	225997689	.	T	C	177.6	PASS	AC=2;AF=0.667;AN=2;DP=712;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:631,60,0:0,0,14,6
chr1	225997973	.	G	A	173.94	PASS	AC=2;AF=0.703;AN=2;DP=285;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:409,36,0:0,0,2,10
chr1	226019653	.	G	A	838.66	PASS	AC=1;AF=0.5;AN=2;DP=837;FractionInformativeReads=1;MQ=60;set=variant6-variant15-variant20-variant24-variant25-variant29-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,42:98:99:1030,0,1379:27,29,21,21
chr1	226026406	.	A	G	1663.4	PASS	AC=1;AF=0.5;AN=2;DP=2540;MQ=60;set=variant2-variant6-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant27-variant29-variant32-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:95,50:145:99:1191,0,2526:59,36,31,19
chr1	226027067	.	GGTGTGTGT	GGTGTGTGTGT,GGTGTGTGTGTGT,GGTGT,GGTGTGT,GGT,GGTGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGT,G	77.7	PASS	AC=0,0,0,0,0,0,0,0,1;AF=0.181,0.125,0.056,0.069,0.028,0.014,0.056,0.056,0.014;AN=2;DP=1111;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-filterInvariant25-variant27-variant28-variant29-variant30-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/9:18:99:3,9,1,5
chr1	226033476	.	A	G	875.11	PASS	AC=1;AF=0.611;AN=2;DP=2487;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant15-variant16-variant20-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,34:76:99:872,0,1032:25,17,16,18
chr1	226034913	.	G	A	1192.03	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=1.496;FractionInformativeReads=1;MQ=60;MQRankSum=-0.234;QD=10.64;ReadPosRankSum=-0.929;SOR=0.785;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,51:112:99:1220,0,1596:30,31,27,24
chr1	226036309	.	A	G	1346.1	PASS	AC=2;AF=0.725;AN=2;DP=3745;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2986,297,0:0,0,45,54
chr1	226036572	.	C	T	945.43	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.684;QD=15.25;ReadPosRankSum=-1.037;SOR=0.793;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,40:62:99:974,0,407:11,11,21,19
chr1	226037887	.	T	G	584.73	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=4.127;FractionInformativeReads=1;MQ=60;MQRankSum=-0.039;QD=11.69;ReadPosRankSum=1.071;SOR=0.289;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:613,0,591:7,16,12,15
chr1	226041279	.	G	A	265.54	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=4.545;FractionInformativeReads=1;MQ=60;MQRankSum=-0.853;QD=12.07;ReadPosRankSum=-0.102;SOR=1.911;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,8:22:99:294,0,1348:9,5,7,1
chr1	226041290	.	A	AG	298.5	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=1.824;FractionInformativeReads=1;MQ=60;MQRankSum=-0.094;QD=12.98;ReadPosRankSum=-0.661;SOR=1.27;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:336,0,1344:9,5,7,2
chr1	226041301	.	G	A	262.52	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=1.824;FractionInformativeReads=1;MQ=60;MQRankSum=-0.936;QD=11.41;ReadPosRankSum=0.807;SOR=1.3;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:291,0,1382:9,6,6,2
chr1	226043658	.	C	A	1146.32	PASS	AC=1;AF=0.5;AN=2;DP=104;FS=2.52;FractionInformativeReads=1;MQ=60;MQRankSum=-1.339;QD=11.02;ReadPosRankSum=-1.008;SOR=0.954;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:53,51:104:99:1175,0,1197:28,25,30,21
chr1	226044063	.	C	T	147.66	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.485;QD=10.55;ReadPosRankSum=-0.839;SOR=0.976;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:176,0,295:6,2,5,1
chr1	226044316	.	T	G	1052.43	PASS	AC=1;AF=0.5;AN=2;DP=104;FS=1.586;FractionInformativeReads=1;MQ=60;MQRankSum=-1.859;QD=10.12;ReadPosRankSum=-2.826;SOR=0.863;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,44:104:99:1081,0,1398:27,33,18,26
chr1	226044489	.	G	GC	1089.1	PASS	AC=2;AF=1;AN=2;DP=1719;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:93:987,93,0:0,0,14,16
chr1	226044766	.	G	A	1562.97	PASS	AC=1;AF=0.625;AN=2;DP=1060;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant11-variant12-variant13-variant15-variant16-variant18-variant22-variant24-variant27-variant28-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:560,0,639:8,17,10,13
chr1	226046648	.	ATGTGTGTGTGTGTGTG	ATGTGTGTG,ATGTGTGTGTG,ATGTG,ATGTGTGTGTGTG,ATGTGTGTGTGTGTG,ATGTGTG,A	322.97	PASS	AC=0,1,1,0,0,0,0;AF=0.425,0.188,0.1,0.088,0.038,0.075,0.013;AN=2;DP=506;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/2:11:99:0,0,8,3
chr1	226046974	.	T	C	2434.87	PASS	AC=1;AF=0.5;AN=2;DP=428;FractionInformativeReads=1;MQ=60;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:105,95:200:99:2222,0,2491:50,55,45,50
chr1	226048746	.	A	C	1719.8	PASS	AC=1;AF=0.5;AN=2;DP=287;MQ=60;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,58:126:99:1406,0,1608:34,34,25,33
chr1	226049909	.	T	C	1046.7	PASS	AC=1;AF=0.5;AN=2;DP=164;FractionInformativeReads=1;MQ=60;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,43:86:99:1083,0,1291:28,15,28,15
chr1	226050078	.	T	A	2111.38	PASS	AC=1;AF=0.5;AN=2;DP=173;FS=1.885;FractionInformativeReads=0.994;MQ=60;MQRankSum=-0.613;QD=12.2;ReadPosRankSum=-1.106;SOR=0.554;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:83,89:172:99:2140,0,2225:36,47,42,47
chr1	226050503	.	G	A	628.07	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=2.067;FractionInformativeReads=1;MQ=60;MQRankSum=-0.833;QD=9.52;ReadPosRankSum=-3.615;SOR=0.967;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,26:66:99:656,0,1131:22,18,16,10
chr1	226050586	.	G	A	1255.3	PASS	AC=1;AF=0.5;AN=2;DP=113;FS=2.412;FractionInformativeReads=1;MQ=60;MQRankSum=0.439;QD=11.11;ReadPosRankSum=1.267;SOR=0.831;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,55:113:99:1284,0,1475:28,30,30,25
chr1	226050624	.	C	T	1298.95	PASS	AC=1;AF=0.5;AN=2;DP=121;FS=1.45;FractionInformativeReads=1;MQ=60;MQRankSum=1.678;QD=10.74;ReadPosRankSum=-0.117;SOR=0.538;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,63:121:99:1327,0,1409:26,32,31,32
chr1	226050815	.	A	G	283.54	PASS	AC=2;AF=0.94;AN=2;DP=278;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,1,4
chr1	226050832	.	T	C	241.77	PASS	AC=2;AF=0.94;AN=2;DP=232;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:250,18,0:0,0,1,5
chr1	226054381	.	T	G	1637.37	PASS	AC=1;AF=0.5;AN=2;DP=164;FS=1.225;FractionInformativeReads=1;MQ=60;MQRankSum=-0.178;QD=9.98;ReadPosRankSum=0.789;SOR=0.587;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:89,75:164:99:1666,0,1965:39,50,35,40
chr1	226054431	.	C	T	1175.35	PASS	AC=1;AF=0.5;AN=2;DP=92;FS=0;FractionInformativeReads=0.978;MQ=60;MQRankSum=0.698;QD=12.78;ReadPosRankSum=0.908;SOR=0.758;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,46:90:99:1204,0,1188:14,30,14,32
chr1	226054681	.	T	A	1123.35	PASS	AC=2;AF=0.932;AN=2;DP=1061;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:816,63,0:0,0,19,2
chr1	226054714	.	G	A	1006.5	PASS	AC=2;AF=0.65;AN=2;DP=831;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant11-variant12-variant13-variant15-variant16-variant18-variant22-variant24-variant27-variant28-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1319,113,0:0,0,29,9
chr1	226054796	.	C	T	1798.35	PASS	AC=1;AF=0.5;AN=2;DP=131;FS=9.543;FractionInformativeReads=1;MQ=60;MQRankSum=-0.137;QD=13.73;ReadPosRankSum=-1.606;SOR=1.426;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,73:131:99:1827,0,1382:29,29,47,26
chr1	226055595	.	G	A	1992.86	PASS	AC=1;AF=0.625;AN=2;DP=1781;MQ=60;set=variant2-variant4-variant11-variant12-variant13-variant15-variant16-variant18-variant22-variant24-variant27-variant28-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,38:73:99:965,0,1022:25,10,24,14
chr1	226058534	.	C	G	439.59	PASS	AC=2;AF=0.932;AN=2;DP=840;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:688,60,0:0,0,15,5
chr1	226065291	.	T	C	1129.49	PASS	AC=1;AF=0.5;AN=2;DP=116;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.36;QD=9.74;ReadPosRankSum=-1.139;SOR=0.74;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,45:116:99:1158,0,1772:34,37,21,24
chr1	226066861	.	A	C	111.22	PASS	AC=2;AF=0.806;AN=2;DP=359;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:551,48,0:0,0,10,6
chr1	226070192	.	C	G	542.33	PASS	AC=1;AF=0.5;AN=2;DP=57;FractionInformativeReads=1;MQ=60;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:411,0,1059:6,11,5,6
chr1	226070194	.	C	T	542.33	PASS	AC=1;AF=0.5;AN=2;DP=54;FractionInformativeReads=1;MQ=60;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:411,0,1059:6,11,5,6
chr1	226074337	.	C	T	1698.58	PASS	AC=1;AF=0.5;AN=2;DP=161;FS=1.272;FractionInformativeReads=1;MQ=60;MQRankSum=-0.097;QD=10.55;ReadPosRankSum=-0.523;SOR=0.574;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:90,71:161:99:1727,0,2441:56,34,42,29
chr1	226074373	.	C	A	2910.54	PASS	AC=1;AF=0.5;AN=2;DP=419;MQ=60;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:105,95:200:99:2368,0,2713:64,41,58,37
chr1	226074436	.	G	C	3648.54	PASS	AC=1;AF=0.5;AN=2;DP=277;FS=0;FractionInformativeReads=0.996;MQ=59.62;MQRankSum=0.738;QD=13.17;ReadPosRankSum=0.002;SOR=0.684;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:129,147:276:99:3677,0,2832:67,62,76,71
chr1	226074635	.	C	T	3073.08	PASS	AC=1;AF=0.5;AN=2;DP=263;FS=3.389;FractionInformativeReads=0.996;MQ=57.74;MQRankSum=-4.042;QD=11.68;ReadPosRankSum=0.308;SOR=0.519;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:127,135:262:99:3101,0,3142:55,72,65,70
chr1	226074985	.	T	C	1451.71	PASS	AC=1;AF=0.5;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,66:134:99:1908,0,1750:43,25,46,20
chr1	226075473	.	C	G	1695.64	PASS	AC=1;AF=0.5;AN=2;DP=169;FractionInformativeReads=1;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,35:70:99:1008,0,1057:15,20,11,24
chr1	226075558	.	C	T	589.33	PASS	AC=1;AF=0.5;AN=2;DP=151;FractionInformativeReads=1;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,15:69:99:280,0,1344:29,25,5,10
chr1	226076598	.	C	T	1279.41	PASS	AC=1;AF=0.5;AN=2;DP=142;FS=3.049;FractionInformativeReads=0.993;MQ=60;MQRankSum=1.791;QD=9.01;ReadPosRankSum=-1.15;SOR=0.48;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:83,58:141:99:1308,0,1952:48,35,30,28
chr1	226108096	.	C	G	90.03	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=5.378;FractionInformativeReads=1;MQ=60;MQRankSum=-0.705;QD=4.09;ReadPosRankSum=1.41;SOR=2.16;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,5:22:99:118,0,665:12,5,5,0
chr1	226108894	.	C	T	328.6	PASS	AC=1;AF=0.5;AN=2;DP=597;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant29-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:460,0,363:8,4,11,6
chr1	226109804	.	G	T	1499.82	PASS	AC=1;AF=0.5;AN=2;DP=125;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.674;QD=12;ReadPosRankSum=-1.884;SOR=0.723;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,63:125:99:1528,0,1583:29,33,29,34
chr1	226110243	.	G	A	587.03	PASS	AC=1;AF=0.5;AN=2;DP=810;MQ=60;set=variant-variant2-variant6-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant29-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,33:56:99:695,0,614:9,14,15,18
chr1	226111970	.	C	G	2671.15	PASS	AC=1;AF=0.5;AN=2;DP=224;FS=1.635;FractionInformativeReads=1;MQ=60;MQRankSum=-1.992;QD=11.92;ReadPosRankSum=-0.187;SOR=0.827;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:116,108:224:99:2699,0,2715:52,64,45,63
chr1	226112025	.	G	A	1495.73	PASS	AC=1;AF=0.5;AN=2;DP=147;FS=0;FractionInformativeReads=0.986;MQ=60;MQRankSum=2.069;QD=10.18;ReadPosRankSum=0.323;SOR=0.706;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:76,69:145:99:1524,0,1778:30,46,27,42
chr1	226112074	.	GC	G	3272.2	PASS	AC=2;AF=1;AN=2;DP=3793;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2016,172,0:0,0,10,47
chr1	226125543	.	G	GA	1459.1	PASS	AC=2;AF=1;AN=2;DP=2643;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1956,159,0:0,0,13,40
chr1	226127443	.	G	C	2739.95	PASS	AC=1;AF=0.565;AN=2;DP=3836;set=variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant17-variant18-variant20-variant21-variant23-variant26-variant31-variant32-variant33-variant35-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,64:157:99:1692,0,2614:41,52,23,41
chr1	226127746	.	C	G	326.35	PASS	AC=1;AF=0.5;AN=2;DP=162;FractionInformativeReads=1;MQRankSum=-6.51;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,19:79:99:327,0,1550:27,33,6,13
chr1	226127789	.	C	T	138.05	PASS	AC=1;AF=0.5;AN=2;DP=105;set=variant4-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:39,8:47:99:107,0,1213:10,29,1,7
chr1	226127841	.	T	C	36.58	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=23;FS=2.5;FractionInformativeReads=1;MQ=52.4;MQRankSum=-3.123;QD=1.59;ReadPosRankSum=-0.527;SOR=1.236;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:19,4:23:65:65,0,604:4,15,0,4
chr1	226179909	.	A	G	436.9	PASS	AC=1;AF=0.857;AN=2;DP=340;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:108,0,154:4,1,1,2
chr1	226180813	.	TTTC	T	304.79	PASS	AC=1;AF=0.517;AN=2;DP=857;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-filterInvariant10-variant11-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:356,0,189:1,4,2,8
chr1	226252232	.	C	T	903.58	PASS	AC=2;AF=1;AN=2;DP=1783;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1345,126,0:0,0,15,27
chr1	226253127	.	T	G	466.77	PASS	AC=2;AF=0.988;AN=2;DP=399;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.742;ReadPosRankSum=0.742;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:654,45,0:0,0,15,0
chr1	226253316	.	G	T	1621.03	PASS	AC=2;AF=1;AN=2;DP=1936;FS=0;MQ=60;MQRankSum=1.238;ReadPosRankSum=1.155;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1332,111,0:0,0,15,22
chr1	226253926	.	T	C	1005.93	PASS	AC=1;AF=0.625;AN=2;DP=3084;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant15-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant29-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,75:132:99:1945,0,1418:21,36,28,47
chr1	226254036	.	T	C	1869.8	PASS	AC=2;AF=1;AN=2;DP=2887;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2070,174,0:0,0,29,29
chr1	226334578	.	G	A	1341.95	PASS	AC=2;AF=1;AN=2;DP=1711;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1273,123,0:0,0,14,27
chr1	226349182	.	A	AT	578	PASS	AC=1;AF=0.5;AN=2;DP=91;MQ=60;set=variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,11:39:99:205,0,722:21,7,6,5
chr1	226352498	.	T	G	1912.2	PASS	AC=2;AF=0.672;AN=2;DP=3985;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,125:126:99:3644,352,0:1,0,75,50
chr1	226353521	.	T	A	715.67	PASS	AC=2;AF=0.646;AN=2;DP=1534;MQ=60;set=variant-variant2-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1902,186,0:0,0,38,24
chr1	226411135	.	G	A	192.99	PASS	AC=1;AF=0.887;AN=2;DP=234;FS=0;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:30:104,0,30:1,0,2,2
chr1	226411317	.	C	T	569.98	PASS	AC=1;AF=0.714;AN=2;DP=3147;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:667,0,867:19,17,16,13
chr1	226414536	.	T	C	931.29	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=6.11;FractionInformativeReads=1;MQ=60;MQRankSum=3.098;QD=15.27;ReadPosRankSum=-0.859;SOR=1.604;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,29:61:99:960,0,975:22,10,24,5
chr1	226419166	.	G	C	843.28	PASS	AC=1;AF=0.703;AN=2;DP=2336;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:535,0,690:12,15,10,11
chr1	226419237	.	C	G	1800.08	PASS	AC=1;AF=0.703;AN=2;DP=5752;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,62:125:99:1621,0,1541:37,26,38,24
chr1	226420536	.	C	G	1721.05	PASS	AC=1;AF=0.705;AN=2;DP=4555;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,42:104:99:1120,0,1520:35,27,25,17
chr1	226438449	.	T	C	1013.03	PASS	AC=2;AF=0.866;AN=2;DP=725;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:681,69,0:0,0,15,8
chr1	226474132	.	G	A	342.14	PASS	AC=1;AF=0.716;AN=2;DP=1642;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,20:37:99:455,0,373:9,8,8,12
chr1	226485327	.	A	AT	1270.46	PASS	AC=1;AF=0.729;AN=2;DP=2159;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:450,0,659:20,6,13,5
chr1	226488826	.	A	G	876.58	PASS	AC=1;AF=0.559;AN=2;DP=955;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant8-variant11-variant12-variant16-variant20-variant23-variant25-variant28-variant31-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,22:56:99:449,0,799:20,14,13,9
chr1	226550553	.	ATT	A,AT	767.33	PASS	AC=2,0;AF=0.698,0.14;AN=2;DP=1688;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:18:53:0,0,12,6
chr1	226550924	.	G	C	1402.35	PASS	AC=2;AF=0.789;AN=2;DP=1738;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1282,137,0:0,0,20,26
chr1	226553485	.	A	C	1186.77	PASS	AC=2;AF=0.875;AN=2;DP=658;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:630,42,0:0,0,12,2
chr1	226553486	.	C	A	1186.77	PASS	AC=2;AF=0.878;AN=2;DP=685;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:630,42,0:0,0,12,2
chr1	226553490	.	C	A	1186.77	PASS	AC=2;AF=0.866;AN=2;DP=747;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:630,42,0:0,0,12,2
chr1	226553494	.	C	A,CA	1070.14	PASS	AC=0,2;AF=0.022,0.913;AN=2;DP=416;set=variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:15:45:0,0,13,2
chr1	226556094	.	T	C	722.95	PASS	AC=2;AF=0.977;AN=2;DP=1898;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1482,141,0:0,0,17,30
chr1	226557878	.	T	C	276.11	PASS	AC=2;AF=0.638;AN=2;DP=563;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:589,54,0:0,0,13,5
chr1	226564691	.	T	C	1841.85	PASS	AC=2;AF=0.789;AN=2;DP=1450;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1552,138,0:0,0,34,12
chr1	226566726	.	A	C	1231.79	PASS	AC=2;AF=0.86;AN=2;DP=1895;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2176,183,0:0,0,47,14
chr1	226567172	.	A	C	586.55	PASS	AC=2;AF=0.567;AN=2;DP=1133;MQ=60;set=variant2-variant4-variant5-variant8-variant11-variant20-variant21-variant27-variant29-variant30-variant33-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2601,240,0:0,0,39,41
chr1	226568665	.	T	C	945.94	PASS	AC=2;AF=0.567;AN=2;DP=965;MQ=60;set=variant2-variant4-variant5-variant8-variant11-variant20-variant21-variant27-variant29-variant30-variant33-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2208,195,0:0,0,47,18
chr1	226570840	.	T	C	2558.82	PASS	AC=2;AF=0.86;AN=2;DP=3494;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2605,228,0:0,0,40,36
chr1	226788496	.	A	C	275.08	PASS	AC=1;AF=0.5;AN=2;DP=34;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:318,0,420:2,11,3,8
chr1	226789578	.	A	G	1359.06	PASS	AC=1;AF=0.5;AN=2;DP=88;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.412;QD=15.44;ReadPosRankSum=-1.384;SOR=0.758;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,56:88:99:1387,0,791:19,13,34,22
chr1	226790103	.	G	A	1358.7	PASS	AC=1;AF=0.563;AN=2;DP=942;FractionInformativeReads=1;MQ=60;set=variant4-variant16-variant26-variant27-variant28-variant30-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,53:112:99:1410,0,1564:26,33,22,31
chr1	226790197	.	G	A	1631.5	PASS	AC=1;AF=0.556;AN=2;DP=1065;MQ=60;set=variant4-variant16-variant26-variant27-variant28-variant30-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,51:107:99:1221,0,1460:23,33,23,28
chr1	226790621	.	T	C	306.43	PASS	AC=1;AF=0.587;AN=2;DP=866;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant25-variant29-variant31-variant32-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,25:36:99:666,0,214:5,6,9,16
chr1	226790768	.	GT	G	377.66	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.927;QD=15.74;ReadPosRankSum=0.116;SOR=0.631;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:415,0,339:7,4,8,5
chr1	226790951	.	A	G	451.98	PASS	AC=1;AF=0.563;AN=2;DP=669;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant8-variant10-variant15-variant16-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,19:45:99:436,0,701:12,14,10,9
chr1	226791238	.	C	T	2181.71	PASS	AC=2;AF=0.684;AN=2;DP=2722;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2725,283,0:0,0,53,42
chr1	226792034	.	TTG	T	1625.35	PASS	AC=1;AF=0.563;AN=2;DP=1720;MQ=60;set=variant2-variant4-variant5-variant8-variant10-variant15-variant16-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,67:110:99:2305,0,1366:15,28,30,37
chr1	226792088	.	C	T	861.46	PASS	AC=1;AF=0.559;AN=2;DP=1189;MQ=60;set=variant2-variant4-variant5-variant8-variant10-variant15-variant16-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,49:78:99:1425,0,823:9,20,17,32
chr1	226793428	.	C	T	1038.98	PASS	AC=1;AF=0.559;AN=2;DP=1105;MQ=60;set=variant2-variant4-variant5-variant8-variant10-variant15-variant16-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,31:63:99:801,0,827:15,17,18,13
chr1	226793899	.	T	TGAG	304.38	PASS	AC=2;AF=0.738;AN=2;DP=1454;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1970,135,0:0,0,27,14
chr1	226795975	.	T	C	1067.85	PASS	AC=1;AF=0.694;AN=2;DP=3188;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,39:88:99:1077,0,1405:23,26,17,22
chr1	226796517	.	C	A	1433.95	PASS	AC=2;AF=0.646;AN=2;DP=3478;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant15-variant16-variant17-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:6158,439,0:0,0,78,67
chr1	226796537	.	T	C	2096.43	PASS	AC=2;AF=0.595;AN=2;DP=2777;MQ=60;set=variant2-variant4-variant5-variant8-variant10-variant15-variant16-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:5942,424,0:0,0,71,64
chr1	226796968	.	T	TCTGA	3264.45	PASS	AC=2;AF=0.646;AN=2;DP=4048;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant15-variant16-variant17-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:7512,505,0:0,0,47,120
chr1	226819524	.	CG	C	200.11	PASS	AC=1;AF=0.737;AN=2;DP=1588;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,17:24:99:443,0,141:3,4,11,6
chr1	226819911	.	C	T	521.26	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=2.425;FractionInformativeReads=0.98;MQ=60;MQRankSum=0.51;QD=10.43;ReadPosRankSum=1.07;SOR=0.694;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:549,0,700:11,14,13,11
chr1	226820219	.	A	G	1609.42	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.273;QD=12.1;ReadPosRankSum=-0.996;SOR=0.714;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,61:133:99:1638,0,1834:48,24,41,20
chr1	226820500	.	G	A	1921.13	PASS	AC=2;AF=0.604;AN=2;DP=2811;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant28-variant29-variant34-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3248,302,0:0,0,35,66
chr1	226820914	.	G	A	733.02	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.347;QD=12.86;ReadPosRankSum=1.495;SOR=0.716;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,24:57:99:761,0,849:19,14,14,10
chr1	226820962	.	C	T	654.11	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.283;QD=10.38;ReadPosRankSum=-2.268;SOR=0.665;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,29:63:99:682,0,780:19,15,16,13
chr1	226821139	.	T	A	243.99	PASS	AC=1;AF=0.545;AN=2;DP=653;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant8-variant11-variant13-variant14-variant17-variant19-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,32:62:99:848,0,786:15,15,18,14
chr1	226821774	.	T	G	860.33	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.084;QD=10.49;ReadPosRankSum=-2.087;SOR=0.706;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,37:82:99:889,0,1109:22,23,19,18
chr1	226822254	.	T	C	706.37	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.309;QD=19.62;ReadPosRankSum=-0.618;SOR=0.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,25:36:99:735,0,260:5,6,11,14
chr1	226825488	.	C	T	572.19	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=1.227;FractionInformativeReads=1;MQ=60;MQRankSum=-1.814;QD=12.44;ReadPosRankSum=-1.44;SOR=0.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:600,0,554:6,16,8,16
chr1	226836590	.	A	G	507.08	PASS	AC=1;AF=0.597;AN=2;DP=1526;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:579,0,575:7,14,8,16
chr1	226895413	.	C	T	3307.67	PASS	AC=1;AF=0.5;AN=2;DP=1068;FractionInformativeReads=1;MQ=60;set=variant11-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:162,133:295:99:3141,0,4137:88,74,74,59
chr1	226895522	.	G	T	3797.83	PASS	AC=1;AF=0.5;AN=2;DP=332;FS=1.3;FractionInformativeReads=1;MQ=60;MQRankSum=3.623;QD=11.44;ReadPosRankSum=-0.828;SOR=0.617;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:173,159:332:99:3826,0,4362:76,97,73,86
chr1	226923146	.	GT	G	697.49	PASS	AC=1;AF=0.543;AN=2;DP=2111;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,46:105:99:1394,0,1880:37,22,23,23
chr1	226923264	.	G	A	1174.66	PASS	AC=1;AF=0.543;AN=2;DP=2706;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,59:123:99:1532,0,1642:28,36,29,30
chr1	226923505	.	G	T	1949.5	PASS	AC=2;AF=0.953;AN=2;DP=9704;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,213:213:99:6290,638,0:0,0,107,106
chr1	226923938	.	A	C	1476.63	PASS	AC=2;AF=0.671;AN=2;DP=4847;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3948,339,0:0,0,51,62
chr1	226924875	.	ACTGCCGCTG	A	1415.53	PASS	AC=1;AF=0.543;AN=2;DP=2063;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,38:84:99:1392,0,2606:18,28,15,23
chr1	226925143	.	T	C	1871.59	PASS	AC=1;AF=0.5;AN=2;DP=188;FS=1.802;FractionInformativeReads=1;MQ=60;MQRankSum=-1.236;QD=9.96;ReadPosRankSum=2.203;SOR=0.559;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:105,83:188:99:1900,0,2698:48,57,41,42
chr1	227058344	.	A	G	76.53	PASS	AC=2;AF=0.64;AN=2;DP=325;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant12-variant15-variant16-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:546,51,0:0,0,9,8
chr1	227063009	.	G	A	285.4	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.113;QD=17.84;ReadPosRankSum=-0.68;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:97:314,0,97:3,2,7,4
chr1	227063229	.	C	T	276.23	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=3.124;FractionInformativeReads=1;MQ=60;MQRankSum=0.487;QD=8.12;ReadPosRankSum=2.108;SOR=0.307;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,12:34:99:304,0,547:8,14,6,6
chr1	227068398	.	G	T	1488.56	PASS	AC=1;AF=0.5;AN=2;DP=162;FS=1.235;FractionInformativeReads=1;MQ=60;MQRankSum=0.332;QD=9.19;ReadPosRankSum=-2.622;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:93,69:162:99:1517,0,2145:51,42,36,33
chr1	227068472	.	G	A	1013.18	PASS	AC=1;AF=0.5;AN=2;DP=114;FS=2.51;FractionInformativeReads=1;MQ=60;MQRankSum=3.122;QD=8.89;ReadPosRankSum=2.209;SOR=1.013;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,46:114:99:1041,0,1636:30,38,17,29
chr1	227069677	.	T	C	1993.2	PASS	AC=1;AF=0.791;AN=2;DP=10130;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,113:229:99:2638,0,2837:52,64,56,57
chr1	227069779	.	A	G	1147.12	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.525;QD=14.52;ReadPosRankSum=-3.908;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:1175,0,1171:8,31,9,31
chr1	227069807	.	A	G	746.44	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=2.094;FractionInformativeReads=1;MQ=60;MQRankSum=1.45;QD=16.59;ReadPosRankSum=0.011;SOR=0.286;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:775,0,673:1,19,3,22
chr1	227071703	.	A	C	417.98	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=3.682;FractionInformativeReads=1;MQ=60;MQRankSum=-1.169;QD=16.72;ReadPosRankSum=1.822;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:446,0,318:6,6,4,9
chr1	227073410	.	G	C	322.37	PASS	AC=1;AF=0.791;AN=2;DP=2952;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:844,0,843:11,24,15,22
chr1	227075916	.	G	A	297.21	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=9.657;FractionInformativeReads=1;MQ=60;MQRankSum=0.912;QD=9.59;ReadPosRankSum=-2.17;SOR=2.683;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:325,0,478:7,12,1,11
chr1	227076671	.	T	C	1182.82	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=0.726;FractionInformativeReads=1;MQ=60;MQRankSum=-0.698;QD=10.95;ReadPosRankSum=0.052;SOR=0.576;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,52:108:99:1211,0,1327:23,33,23,29
chr1	227077646	.	G	C	475.17	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=5.618;FractionInformativeReads=1;MQ=60;MQRankSum=0.293;QD=13.98;ReadPosRankSum=-1.121;SOR=1.911;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:503,0,412:9,7,14,4
chr1	227078955	.	T	C	412.55	PASS	AC=1;AF=0.791;AN=2;DP=2289;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:478,0,595:15,10,14,8
chr1	227079301	.	G	C	777.98	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=4.001;FractionInformativeReads=1;MQ=60;MQRankSum=0.57;QD=15.56;ReadPosRankSum=-0.197;SOR=0.439;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,29:50:99:806,0,586:13,8,14,15
chr1	227081622	.	A	G	1462.18	PASS	AC=1;AF=0.791;AN=2;DP=4026;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,62:104:99:1600,0,871:24,18,40,22
chr1	227081930	.	C	T	417.49	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.668;QD=18.98;ReadPosRankSum=0.134;SOR=0.352;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:446,0,295:0,9,1,12
chr1	227083816	.	G	A	193.69	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=1.984;FractionInformativeReads=1;MQ=60;MQRankSum=-0.206;QD=10.19;ReadPosRankSum=-0.206;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:222,0,236:5,6,2,6
chr1	227085462	.	T	C	1346.16	PASS	AC=1;AF=0.5;AN=2;DP=2205;MQ=60;set=variant7-variant12-variant15-variant16-variant18-variant21-variant22-variant23-variant25-variant28-variant30-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,55:101:99:1428,0,1256:17,29,25,30
chr1	227085646	.	C	T	122.15	PASS	AC=1;AF=0.5;AN=2;DP=180;FractionInformativeReads=1;MQ=60;set=variant7-variant12-variant15-variant16-variant21-variant22-variant25-variant28-variant30-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:140,0,191:1,4,1,4
chr1	227086276	.	T	C	1238.36	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=1.694;FractionInformativeReads=1;MQ=60;MQRankSum=-0.899;QD=12.64;ReadPosRankSum=1.581;SOR=0.518;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,50:98:99:1267,0,1233:16,32,19,31
chr1	227086854	.	TG	T	4459.37	PASS	AC=1;AF=0.5;AN=2;DP=278;FS=1.495;FractionInformativeReads=0.989;MQ=60;MQRankSum=1.312;QD=16.04;ReadPosRankSum=-0.726;SOR=0.81;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:142,133:275:99:4497,0,4818:55,87,48,85
chr1	227087243	.	G	T	135.18	PASS	AC=1;AF=0.5;AN=2;DP=252;MQ=60;set=variant7-variant15-variant16-variant18-variant21-variant22-variant23-variant25-variant28-variant30-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:77:77,0,352:3,7,1,3
chr1	227128108	.	T	C	626.25	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.13;QD=12.78;ReadPosRankSum=-1.13;SOR=0.61;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,25:49:99:654,0,536:10,14,11,14
chr1	227128237	.	C	T	291.37	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=5.88;FractionInformativeReads=1;MQ=60;MQRankSum=-2.18;QD=20.81;ReadPosRankSum=0.156;SOR=0.082;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,11:14:81:320,0,81:0,3,5,6
chr1	227152778	.	T	G	1502.64	PASS	AC=1;AF=0.5;AN=2;DP=117;FS=1.471;FractionInformativeReads=1;MQ=60;MQRankSum=-0.837;QD=12.84;ReadPosRankSum=-1.355;SOR=0.606;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,59:117:99:1531,0,1339:31,27,29,30
chr1	227169792	.	C	T	1521.81	PASS	AC=1;AF=0.5;AN=2;DP=117;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.219;QD=13.01;ReadPosRankSum=1.389;SOR=0.698;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,61:117:99:1550,0,1486:23,33,25,36
chr1	227170298	.	A	G	297.45	PASS	AC=2;AF=0.667;AN=2;DP=761;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:44:530,44,0:0,0,13,2
chr1	227171584	.	GT	G	230.19	PASS	AC=1;AF=0.629;AN=2;DP=738;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:193,0,368:5,7,4,3
chr1	227171735	.	T	TG	274.93	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=5.519;FractionInformativeReads=1;MQ=60;MQRankSum=-0.794;QD=6.11;ReadPosRankSum=-1.292;SOR=2.459;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,16:45:99:312,0,1065:25,4,16,0
chr1	227171737	.	G	T	755.52	PASS	AC=1;AF=0.5;AN=2;DP=1054;MQ=60;set=variant4-variant5-variant9-variant11-variant13-variant17-variant20-variant21-variant24-variant27-variant28-variant32-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:973,0,1002:21,2,20,4
chr1	227171739	.	G	T,C	755.46	PASS	AC=1,0;AF=0.267,0.283;AN=2;DP=1982;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:52:99:22,3,20,7
chr1	227171958	.	G	C	3037.2	PASS	AC=1;AF=0.577;AN=2;DP=3106;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant31-variant33-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,51:95:99:1272,0,1340:14,30,24,27
chr1	227172290	.	C	T	1821.35	PASS	AC=1;AF=0.613;AN=2;DP=7789;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:108,117:225:99:2679,0,2603:48,60,56,61
chr1	227172903	.	G	A	230.82	PASS	AC=1;AF=0.613;AN=2;DP=1070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:599,0,547:13,7,14,7
chr1	227174145	.	T	C	334.27	PASS	AC=1;AF=0.641;AN=2;DP=2503;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,47:96:99:1260,0,1282:35,14,32,15
chr1	227174210	.	T	C	537.19	PASS	AC=1;AF=0.625;AN=2;DP=5041;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,73:156:99:1810,0,1973:47,36,38,35
chr1	227174823	.	A	AT	1126.74	PASS	AC=1;AF=0.625;AN=2;DP=2563;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,42:96:99:1065,0,1458:29,25,21,21
chr1	227175039	.	G	A	915.54	PASS	AC=1;AF=0.5;AN=2;DP=97;FS=0;FractionInformativeReads=0.99;MQ=60;MQRankSum=-1.965;QD=9.44;ReadPosRankSum=-0.038;SOR=0.715;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,37:96:99:944,0,1671:30,29,18,19
chr1	227175253	.	C	T	49.73	PASS	AC=1;AF=0.713;AN=2;DP=400;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:275,0,105:1,3,1,7
chr1	227177444	.	A	G	853.65	PASS	AC=1;AF=0.625;AN=2;DP=1766;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,28:63:99:841,0,973:25,10,23,5
chr1	227177468	.	G	T	1168.25	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0.85;FractionInformativeReads=1;MQ=60;MQRankSum=-1.315;QD=12.43;ReadPosRankSum=-2.845;SOR=0.821;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,44:94:99:1196,0,1308:35,15,32,12
chr1	227177625	.	CAT	C	3911.29	PASS	AC=1;AF=0.5;AN=2;DP=197;FS=2.492;FractionInformativeReads=0.98;MQ=60;MQRankSum=0.081;QD=19.85;ReadPosRankSum=1.594;SOR=0.514;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:91,102:193:99:3949,0,3608:40,51,50,52
chr1	227177731	.	A	T	1005.02	PASS	AC=1;AF=0.613;AN=2;DP=2574;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,58:98:99:1783,0,1219:20,20,30,28
chr1	227177883	.	T	TACA	1084.25	PASS	AC=1;AF=0.613;AN=2;DP=3008;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,44:103:99:1665,0,2867:24,35,18,26
chr1	227178127	.	A	G	588.53	PASS	AC=1;AF=0.613;AN=2;DP=1463;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:616,0,643:11,14,10,13
chr1	227178700	.	A	G	1637.44	PASS	AC=1;AF=0.613;AN=2;DP=4964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,70:143:99:1837,0,1873:43,30,37,33
chr1	227178713	.	C	T	1822	PASS	AC=1;AF=0.613;AN=2;DP=5284;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,75:155:99:1958,0,2161:49,31,41,34
chr1	227178948	.	G	A	13596.2	PASS	AC=1;AF=0.821;AN=2;DP=13914;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:165,135:300:99:4887,0,7178:72,93,57,78
chr1	227178962	.	T	C	3864.57	PASS	AC=1;AF=0.613;AN=2;DP=9352;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:154,119:273:99:4543,0,6999:65,89,47,72
chr1	227179037	.	G	T	2452.03	PASS	AC=1;AF=0.613;AN=2;DP=4122;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,49:121:99:1701,0,3612:24,48,16,33
chr1	227179054	.	G	A	2110.77	PASS	AC=1;AF=0.613;AN=2;DP=3277;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,41:105:99:1520,0,3391:24,40,12,29
chr1	227179358	.	T	C	1016.19	PASS	AC=1;AF=0.92;AN=2;DP=2310;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:27,17:44:99:453,0,731:13,14,9,8
chr1	227179501	.	AATAAGCACCT	A	201.19	PASS	AC=1;AF=0.597;AN=2;DP=1036;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:699,0,2155:8,11,7,11
chr1	227180947	.	A	C	2189.22	PASS	AC=1;AF=0.625;AN=2;DP=5731;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,69:156:99:1609,0,2010:47,40,42,27
chr1	227180981	.	T	C	2440.09	PASS	AC=1;AF=0.625;AN=2;DP=6663;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:99,88:187:99:2101,0,2343:49,50,49,39
chr1	227181554	.	C	G	1773.99	PASS	AC=1;AF=0.613;AN=2;DP=2087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:1584,0,2696:26,16,26,14
chr1	227181555	.	A	G	1773.99	PASS	AC=1;AF=0.613;AN=2;DP=2097;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,41:83:99:1584,0,2696:25,17,27,14
chr1	227181838	.	T	G	1309.04	PASS	AC=1;AF=0.613;AN=2;DP=3120;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,54:102:99:1556,0,1412:13,35,21,33
chr1	227181923	.	C	T	679.4	PASS	AC=1;AF=0.613;AN=2;DP=1648;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,37:63:99:1074,0,689:14,12,18,19
chr1	227182033	.	G	A	1924.07	PASS	AC=2;AF=0.943;AN=2;DP=4342;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:2990,311,0:0,0,53,52
chr1	227182575	.	A	G	1839.74	PASS	AC=2;AF=0.884;AN=2;DP=3819;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2894,285,0:0,0,60,35
chr1	227191755	.	ATT	AT,ATTT,ATTTT,A	342.89	PASS	AC=1,0,0,0;AF=0.488,0.15,0.025,0.025;AN=2;DP=1089;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:26:60:5,1,12,8
chr1	227192028	.	T	C	411.05	PASS	AC=1;AF=0.548;AN=2;DP=833;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant29-variant31-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,25:38:99:567,0,337:7,6,12,13
chr1	227192468	.	G	A	579.54	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=2.75;FractionInformativeReads=1;MQ=60;MQRankSum=1.658;QD=27.6;ReadPosRankSum=1.055;SOR=1.359;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,18:21:38:608,0,38:2,1,6,12
chr1	227192579	.	A	C	331.33	PASS	AC=1;AF=0.613;AN=2;DP=1413;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,29:48:99:698,0,514:15,4,15,14
chr1	227211102	.	T	C	82.97	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.495;QD=5.93;ReadPosRankSum=0.778;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,4:14:99:111,0,317:2,8,1,3
chr1	227214024	.	G	A	232.05	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.047;QD=9.28;ReadPosRankSum=2.01;SOR=0.976;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:260,0,507:3,13,1,8
chr1	227216662	.	T	C	1154.56	PASS	AC=1;AF=0.661;AN=2;DP=2302;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant31-variant34-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,40:79:99:1084,0,1080:16,23,17,23
chr1	227218069	.	C	CAT	1349.92	PASS	AC=2;AF=0.837;AN=2;DP=1098;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:1035,69,0:0,0,17,6
chr1	227218085	.	CA	C	287.23	PASS	AC=1;AF=0.583;AN=2;DP=382;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant11-variant13-variant16-variant17-variant18-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:332,0,427:13,7,11,6
chr1	227219305	.	C	T	292.2	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.566;QD=26.56;ReadPosRankSum=-1.708;SOR=1.802;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:99:320,0,102:0,3,0,8
chr1	227219314	.	A	G	143.54	PASS	AC=1;AF=0.646;AN=2;DP=228;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant31-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:102,0,327:0,7,0,3
chr1	227221239	.	A	T	465.34	PASS	AC=1;AF=0.5;AN=2;DP=298;MQ=60;set=variant10-variant14-variant26-variant29-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,22:35:99:506,0,263:6,7,6,16
chr1	227222515	.	G	GACAA	2846.16	PASS	AC=2;AF=1;AN=2;DP=2939;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2364,159,0:0,0,19,34
chr1	227239739	.	T	A	560.51	PASS	AC=1;AF=0.583;AN=2;DP=491;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant11-variant13-variant16-variant17-variant18-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:366,0,1054:1,14,2,8
chr1	227239746	.	G	T	1186.77	PASS	AC=1;AF=0.732;AN=2;DP=1440;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:354,0,1054:1,12,1,9
chr1	227247016	.	G	C	894.48	PASS	AC=1;AF=0.583;AN=2;DP=1157;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant11-variant13-variant16-variant17-variant18-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,54:96:99:1319,0,1205:17,25,30,24
chr1	227261858	.	A	G	120.06	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.637;QD=8;ReadPosRankSum=0.984;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:148,0,307:5,3,4,3
chr1	227268488	.	T	G	549.84	PASS	AC=1;AF=0.591;AN=2;DP=911;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:620,0,640:17,8,15,7
chr1	227288655	.	G	A	542.78	PASS	AC=1;AF=0.826;AN=2;DP=681;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:233,0,107:3,0,5,2
chr1	227299978	.	C	T	1398.76	PASS	AC=1;AF=0.591;AN=2;DP=1718;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:814,0,739:18,11,19,15
chr1	227330759	.	A	G	1117.27	PASS	AC=1;AF=0.775;AN=2;DP=3910;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,56:102:99:1358,0,1025:20,26,26,30
chr1	227333141	.	T	C	266.62	PASS	AC=1;AF=0.583;AN=2;DP=278;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant11-variant13-variant16-variant17-variant18-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:488,0,405:12,1,13,2
chr1	227333175	.	C	G	537.39	PASS	AC=1;AF=0.5;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant11-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,21:46:99:636,0,796:20,5,16,5
chr1	227348126	.	T	C	441.76	PASS	AC=2;AF=0.625;AN=2;DP=279;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant10-variant11-variant13-variant16-variant17-variant18-variant31-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:594,57,0:0,0,13,6
chr1	227348159	.	T	C	714.36	PASS	AC=1;AF=0.5;AN=2;DP=83;FractionInformativeReads=1;MQ=60;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:558,0,579:15,4,14,6
chr1	227381362	.	T	C	343.04	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=1;MQ=60;set=variant11-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,16:22:99:654,0,199:6,0,16,0
chr1	227381480	.	G	C	969.04	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=5.254;FractionInformativeReads=1;MQ=60;MQRankSum=-2.16;QD=10.2;ReadPosRankSum=-0.592;SOR=1.089;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,40:95:99:997,0,1368:26,29,24,16
chr1	227387149	.	T	C	46.5	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.026;QD=11.62;ReadPosRankSum=1.026;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:75:75,0,76:2,0,2,0
chr1	227387361	.	A	G	1920.97	PASS	AC=2;AF=0.852;AN=2;DP=2200;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1230,132,0:0,0,18,26
chr1	227400792	.	A	T	334.68	PASS	AC=1;AF=0.618;AN=2;DP=192;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant29-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:90:90,0,121:3,2,3,0
chr1	227504794	.	T	C	1205.79	PASS	AC=1;AF=0.5;AN=2;DP=2133;MQ=60;set=variant2-variant10-variant11-variant14-variant15-variant18-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,66:129:99:1593,0,1477:37,26,36,30
chr1	227505084	.	ACATAT	A	1880.83	PASS	AC=1;AF=0.5;AN=2;DP=191;MQ=60;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,57:100:99:2235,0,2257:18,25,25,32
chr1	227505212	.	TAAAA	TAAA,T,TAAAAA	91.3	PASS	AC=0,1,1;AF=0.128,0.205,0.244;AN=2;DP=3772;set=filterInvariant-variant2-filterInvariant4-filterInvariant5-variant6-variant8-filterInvariant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-variant37-variant38-variant39-filterInvariant40-variant41-variant43-variant44	GT:DP:GQ:SB	2/3:68:99:4,3,44,17
chr1	227505361	.	G	GA	1577.49	PASS	AC=1;AF=0.542;AN=2;DP=1829;MQ=60;set=variant6-variant8-variant12-variant21-variant22-variant23-variant28-variant30-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,70:141:99:1700,0,1725:37,34,31,39
chr1	227505820	.	G	GC	1975.31	PASS	AC=2;AF=1;AN=2;DP=1773;FS=0;MQ=60;MQRankSum=0;ReadPosRankSum=-0.551;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1681,126,0:0,0,24,18
chr1	227505854	.	C	CGGG,CGGGG	631.51	PASS	AC=0,1;AF=0.167,0.333;AN=2;DP=148;MQ=60;set=variant11-variant18-variant41	GT:DP:GQ:SB	0/2:51:99:21,15,11,4
chr1	227505957	.	G	A	2168.35	PASS	AC=1;AF=0.5;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant11-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,42:102:99:1506,0,2312:31,29,24,18
chr1	227505974	.	A	T	783.2	PASS	AC=1;AF=0.5;AN=2;DP=1935;MQ=60;set=variant2-variant10-variant11-variant14-variant15-variant18-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,44:102:99:1522,0,2207:30,28,24,20
chr1	227505994	.	C	CG	5465.2	PASS	AC=2;AF=1;AN=2;DP=5957;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:4160,298,0:0,0,50,47
chr1	227506034	.	T	C	543.99	PASS	AC=1;AF=0.5;AN=2;DP=1615;MQ=60;set=variant2-variant10-variant11-variant14-variant15-variant18-variant20-variant22-variant24-variant26-variant29-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,44:90:99:1037,0,1059:21,25,21,23
chr1	227834233	.	TC	T	1989.36	PASS	AC=2;AF=0.652;AN=2;DP=7280;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant29-variant30-variant31-variant33-variant34-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:4908,496,0:0,0,92,73
chr1	227834400	.	G	A	1673.6	PASS	AC=2;AF=0.713;AN=2;DP=6177;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4284,417,0:0,0,51,88
chr1	227844182	.	A	T	52.74	PASS	AC=2;AF=0.667;AN=2;DP=49;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant11-variant16-variant20-variant23-variant31-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:264,21,0:0,0,1,6
chr1	227919190	.	G	A	504.35	PASS	AC=2;AF=0.58;AN=2;DP=1816;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant26-variant30-variant31-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1786,162,0:0,0,33,21
chr1	227920061	.	T	G	789.66	PASS	AC=2;AF=0.724;AN=2;DP=2016;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1862,168,0:0,0,26,30
chr1	227922918	.	A	C	2394.03	PASS	AC=2;AF=0.586;AN=2;DP=9052;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,250:250:99:7684,748,0:0,0,150,100
chr1	227923081	.	G	A	8137.41	PASS	AC=2;AF=0.989;AN=2;DP=14002;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,294:294:99:8385,874,0:0,0,134,160
chr1	227935280	.	C	T	193.96	PASS	AC=2;AF=0.724;AN=2;DP=1228;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:973,77,0:0,0,21,5
chr1	227935355	.	T	C	385.55	PASS	AC=2;AF=0.724;AN=2;DP=3342;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2093,192,0:0,0,37,27
chr1	227935417	.	C	T	1102.22	PASS	AC=1;AF=0.5;AN=2;DP=113;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.682;QD=9.75;ReadPosRankSum=-0.369;SOR=0.626;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,48:113:99:1130,0,1627:35,30,25,23
chr1	227935444	.	A	G	629.07	PASS	AC=2;AF=0.586;AN=2;DP=4678;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4008,389,0:0,0,71,59
chr1	227946501	.	G	GCC	142.73	PASS	AC=2;AF=0.803;AN=2;DP=257;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,1,1
chr1	227954716	.	G	A	2227.28	PASS	AC=1;AF=0.5;AN=2;DP=190;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.02;QD=11.72;ReadPosRankSum=3.317;SOR=0.729;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,98:190:99:2256,0,2190:48,44,52,46
chr1	227964399	.	T	C	529.18	PASS	AC=2;AF=0.724;AN=2;DP=1946;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1931,200,0:0,0,29,38
chr1	227968033	.	T	C	191.76	PASS	AC=2;AF=0.724;AN=2;DP=919;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:809,78,0:0,0,17,9
chr1	227968107	.	G	A	619.33	PASS	AC=2;AF=0.658;AN=2;DP=2514;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2071,206,0:0,0,44,25
chr1	228003676	.	T	C	726.95	PASS	AC=1;AF=0.5;AN=2;DP=233;MQ=60;set=variant9-variant22-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,22:37:99:688,0,441:2,13,6,16
chr1	228003967	.	G	A	1254.68	PASS	AC=1;AF=0.635;AN=2;DP=3573;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,67:121:99:1750,0,1356:21,33,27,40
chr1	228033197	.	A	G	1547.22	PASS	AC=2;AF=0.893;AN=2;DP=3285;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2540,260,0:0,0,52,35
chr1	228107031	.	G	A	564.46	PASS	AC=1;AF=0.533;AN=2;DP=1216;MQ=60;set=variant2-variant4-variant5-variant8-variant10-variant12-variant18-variant27-variant28-variant32-variant33-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,28:78:99:728,0,1411:18,32,12,16
chr1	228107139	.	A	G	593.85	PASS	AC=2;AF=0.646;AN=2;DP=2186;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1405,132,0:0,0,21,23
chr1	228107262	.	G	A	1040.31	PASS	AC=1;AF=0.567;AN=2;DP=788;MQ=60;set=variant2-variant4-variant5-variant8-variant10-variant12-variant18-variant27-variant28-variant32-variant33-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:619,0,730:17,11,14,12
chr1	228107281	.	G	A	396.48	PASS	AC=2;AF=0.646;AN=2;DP=1869;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1765,144,0:0,0,26,22
chr1	228107365	.	A	G	154.6	PASS	AC=2;AF=0.75;AN=2;DP=740;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:999,72,0:0,0,3,21
chr1	228107387	.	TACACACACAC	T,TACACACAC,TACACAC	79.67	PASS	AC=2,0,0;AF=0.515,0.136,0.015;AN=2;DP=464;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:19:60:0,0,2,17
chr1	228107403	.	C	T	88.71	PASS	AC=2;AF=0.607;AN=2;DP=350;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:57:855,57,0:0,0,2,16
chr1	228107430	.	T	C	91.72	PASS	AC=2;AF=0.603;AN=2;DP=303;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:802,54,0:0,0,5,13
chr1	228107554	.	A	AACAC,AAC,AACACAC	316.52	PASS	AC=2,0,0;AF=0.547,0.016,0.016;AN=2;DP=1287;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:DP:GQ:SB	1/1:31:96:0,0,20,11
chr1	228107643	.	T	C	587.62	PASS	AC=2;AF=0.756;AN=2;DP=3148;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1803,186,0:0,0,33,29
chr1	228108226	.	C	T	164.91	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.109;QD=11.78;ReadPosRankSum=-0.193;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:193,0,148:4,2,5,3
chr1	228108932	.	A	G	1885.69	PASS	AC=2;AF=0.646;AN=2;DP=7559;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,177:177:99:5919,530,0:0,0,86,91
chr1	228112121	.	A	G	816.05	PASS	AC=1;AF=0.65;AN=2;DP=3736;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,44:83:99:1043,0,1012:14,25,19,25
chr1	228112280	.	T	C	134.32	PASS	AC=1;AF=0.653;AN=2;DP=572;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:90:90,0,272:1,6,0,3
chr1	228112776	.	A	G	103.54	PASS	AC=2;AF=1;AN=2;DP=280;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:189,18,0:0,0,4,2
chr1	228113163	.	A	G	927.74	PASS	AC=2;AF=0.744;AN=2;DP=3869;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,60:61:99:1888,177,0:1,0,23,37
chr1	228129197	.	T	C	718.53	PASS	AC=1;AF=0.663;AN=2;DP=3034;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,35:73:99:895,0,889:21,17,16,19
chr1	228156296	.	A	G	79.63	PASS	AC=1;AF=0.667;AN=2;DP=45;FractionInformativeReads=1;set=variant18-filterInvariant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:197,0,295:6,5,6,4
chr1	228247351	.	T	C	1129.74	PASS	AC=2;AF=0.795;AN=2;DP=5046;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,107:109:99:3507,277,0:1,1,58,49
chr1	228248361	.	C	A	972.36	PASS	AC=1;AF=0.5;AN=2;DP=875;FractionInformativeReads=1;set=variant2-variant3-variant10-variant15-variant26-variant31-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,30:70:99:789,0,1018:23,17,18,12
chr1	228248508	.	A	G	821.16	PASS	AC=1;AF=0.545;AN=2;DP=1260;MQ=60;set=variant2-variant3-variant10-variant15-variant26-variant31-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,57:115:99:1467,0,1418:29,29,25,32
chr1	228248597	.	C	A	914.6	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=2.994;FractionInformativeReads=0.988;MQ=60;MQRankSum=-0.099;QD=11.15;ReadPosRankSum=-1.33;SOR=1.044;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,38:81:99:943,0,1074:18,25,13,25
chr1	228270268	.	A	G	286.34	PASS	AC=2;AF=0.808;AN=2;DP=572;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:682,51,0:0,0,15,2
chr1	228270964	.	G	C	1196.11	PASS	AC=1;AF=0.538;AN=2;DP=1848;MQ=60;set=variant2-variant4-variant5-variant8-variant12-variant14-variant18-variant24-variant27-variant32-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,70:129:99:1624,0,1338:34,25,37,33
chr1	228284991	.	C	T	3134.04	PASS	AC=1;AF=0.5;AN=2;DP=2113;MQ=60;set=variant3-variant10-variant15-variant26-variant31-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,92:196:99:2155,0,2732:53,51,56,36
chr1	228294300	.	T	C	1597.9	PASS	AC=1;AF=0.716;AN=2;DP=2450;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,31:61:99:925,0,840:21,9,23,8
chr1	228296745	.	C	T	4733.88	PASS	AC=2;AF=0.821;AN=2;DP=5440;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,154:156:99:5062,418,0:1,1,73,81
chr1	228328743	.	T	C	334.22	PASS	AC=2;AF=0.989;AN=2;DP=609;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.58;ReadPosRankSum=0.296;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:438,33,0:0,0,9,2
chr1	228333652	.	G	A	3019.42	PASS	AC=1;AF=0.5;AN=2;DP=1343;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant15-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,112:205:99:2676,0,2155:49,44,68,44
chr1	228335125	.	C	T	1840.56	PASS	AC=1;AF=0.5;AN=2;DP=636;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,49:94:99:1185,0,1181:30,15,29,20
chr1	228347352	.	A	G	3410.08	PASS	AC=1;AF=0.909;AN=2;DP=5711;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:64,61:125:99:1541,0,1628:33,31,25,36
chr1	228351877	.	T	A	436.17	PASS	AC=1;AF=0.5;AN=2;DP=144;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,41:89:99:956,0,1329:28,20,22,19
chr1	228352160	.	T	C	2384.36	PASS	AC=2;AF=0.989;AN=2;DP=4693;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3677,312,0:0,0,54,50
chr1	228352183	.	TG	T	1390.6	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=0;FractionInformativeReads=0.99;MQ=60;MQRankSum=-0.627;QD=13.77;ReadPosRankSum=1.386;SOR=0.637;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,43:100:99:1428,0,1962:27,30,21,22
chr1	228353781	.	C	G	3279.79	PASS	AC=1;AF=0.5;AN=2;DP=529;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:128,130:258:99:3001,0,2909:63,65,62,68
chr1	228362306	.	G	A	1104.5	PASS	AC=1;AF=0.5;AN=2;DP=106;FS=3.882;FractionInformativeReads=1;MQ=60;MQRankSum=-1.355;QD=10.42;ReadPosRankSum=-0.582;SOR=1.133;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,45:106:99:1133,0,1688:38,23,32,13
chr1	228364558	.	A	T	1428.21	PASS	AC=1;AF=0.5;AN=2;DP=585;MQ=60;set=variant3-variant10-variant15-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:715,0,926:23,16,12,15
chr1	228365184	.	CTTT	CT,C,CTT,CTTTTTTTTT	95.03	PASS	AC=0,0,1,0;AF=0.458,0.083,0.208,0.042;AN=2;DP=169;set=variant2-variant6-variant9-variant15-variant16-variant29-variant34-variant36-variant38-variant39-filterInvariant41-variant43	GT:DP:GQ:SB	0/3:6:1:0,1,0,5
chr1	228366526	.	A	G	1361.23	PASS	AC=2;AF=0.989;AN=2;DP=2632;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1894,173,0:0,0,34,24
chr1	228366813	.	C	T	647.38	PASS	AC=2;AF=0.989;AN=2;DP=1831;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:86:987,86,0:0,0,11,18
chr1	228367200	.	C	T	3196.43	PASS	AC=1;AF=0.5;AN=2;DP=1115;MQ=60;set=variant3-variant10-variant15-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,74:145:99:1710,0,1695:31,40,36,38
chr1	228367599	.	G	A	471.99	PASS	AC=1;AF=0.5;AN=2;DP=111;FS=0;FractionInformativeReads=1;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,35:66:99:840,0,781:11,20,13,22
chr1	228368230	.	G	A	3034.4	PASS	AC=2;AF=0.989;AN=2;DP=4082;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2591,260,0:0,0,44,43
chr1	228391382	.	T	TA	3438.33	PASS	AC=1;AF=0.5;AN=2;DP=11456;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:58,146:204:99:2632,0,706:30,28,78,68
chr1	228399482	.	C	G	3690.38	PASS	AC=2;AF=0.743;AN=2;DP=4660;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,90:92:99:2714,226,0:1,1,46,44
chr1	228399671	.	G	A	1990.69	PASS	AC=1;AF=0.5;AN=2;DP=465;FractionInformativeReads=1;MQ=60;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,80:135:99:1860,0,1279:27,28,40,40
chr1	228399766	.	T	C	5142.97	PASS	AC=2;AF=0.743;AN=2;DP=6911;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3848,378,0:0,0,55,71
chr1	228400646	.	T	C	2695.8	PASS	AC=2;AF=0.743;AN=2;DP=2756;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,54:55:83:2298,83,0:0,1,12,42
chr1	228400653	.	A	T	2592.79	PASS	AC=2;AF=0.743;AN=2;DP=2390;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,51:52:80:2256,80,0:0,1,12,39
chr1	228402047	.	A	G	13248.9	PASS	AC=2;AF=0.743;AN=2;DP=18450;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,377:378:99:11438,1105,0:1,0,185,192
chr1	228402121	.	A	G	9366.56	PASS	AC=2;AF=0.743;AN=2;DP=11755;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,247:247:99:7922,741,0:0,0,96,151
chr1	228402508	.	C	T	842.97	PASS	AC=1;AF=0.648;AN=2;DP=1292;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,31:48:99:849,0,423:12,5,20,11
chr1	228403897	.	T	C	113.92	PASS	AC=1;AF=0.667;AN=2;DP=364;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant9-variant13-variant16-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:205,0,232:5,4,6,3
chr1	228404547	.	G	A	131.32	PASS	AC=1;AF=0.5;AN=2;DP=74;MQ=60;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:321,0,519:6,11,6,6
chr1	228404668	.	T	C	1223.37	PASS	AC=1;AF=0.648;AN=2;DP=2060;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,36:62:99:882,0,790:21,5,23,13
chr1	228405118	.	G	GA	328.21	PASS	AC=2;AF=1;AN=2;DP=1121;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:560,60,0:0,0,4,16
chr1	228407285	.	C	T	2608.13	PASS	AC=1;AF=0.5;AN=2;DP=724;FractionInformativeReads=1;MQ=60;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:134,120:254:99:3197,0,3445:45,89,34,86
chr1	228412106	.	T	C	1648.8	PASS	AC=1;AF=0.667;AN=2;DP=2817;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,52:131:99:1137,0,2205:53,26,31,21
chr1	228412227	.	T	C	6630.66	PASS	AC=1;AF=0.667;AN=2;DP=8907;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:166,148:314:99:3963,0,4431:98,68,93,55
chr1	228412308	.	G	A	5308.01	PASS	AC=1;AF=0.667;AN=2;DP=12266;set=variant3-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:216,199:415:99:4842,0,5617:108,108,105,94
chr1	228412537	.	G	A	1301.87	PASS	AC=1;AF=0.5;AN=2;DP=405;MQ=60;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,56:142:99:1433,0,2507:24,62,14,42
chr1	228430697	.	A	G	192.83	PASS	AC=2;AF=0.711;AN=2;DP=871;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:776,63,0:0,0,18,3
chr1	228431095	.	A	G	2354.3	PASS	AC=2;AF=0.711;AN=2;DP=12543;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,343:343:99:10314,1028,0:0,0,143,200
chr1	228431930	.	C	T	2946.94	PASS	AC=2;AF=0.711;AN=2;DP=11792;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,239:239:99:7762,716,0:0,0,144,95
chr1	228432323	.	T	C	1235.54	PASS	AC=1;AF=0.5;AN=2;DP=212;MQ=60;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:1111,0,1046:3,30,6,29
chr1	228433217	.	A	G	1506.39	PASS	AC=2;AF=0.711;AN=2;DP=15378;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,398:398:99:12569,1193,0:0,0,210,188
chr1	228433346	.	C	T	3013.88	PASS	AC=1;AF=0.5;AN=2;DP=902;MQ=60;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:142,178:320:99:4568,0,3625:53,89,71,107
chr1	228434395	.	T	C	3172.2	PASS	AC=2;AF=0.711;AN=2;DP=22222;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,556:556:99:17157,1665,0:0,0,266,290
chr1	228434467	.	T	C	3110.34	PASS	AC=2;AF=0.711;AN=2;DP=17037;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,448:448:99:13792,1342,0:0,0,186,262
chr1	228437603	.	T	C	3296.13	PASS	AC=2;AF=0.711;AN=2;DP=13930;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,335:335:99:10473,1004,0:0,0,208,127
chr1	228437772	.	G	A	7688.53	PASS	AC=1;AF=0.5;AN=2;DP=1717;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:276,289:565:99:7628,0,7357:141,135,155,134
chr1	228438045	.	G	A	1183.81	PASS	AC=1;AF=0.529;AN=2;DP=1959;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant12-variant14-variant18-variant20-variant24-variant27-variant29-variant32-variant34-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,55:123:99:1368,0,1931:16,52,16,39
chr1	228444318	.	T	G	2088.53	PASS	AC=2;AF=0.711;AN=2;DP=11300;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,301:301:99:9679,901,0:0,0,186,115
chr1	228444565	.	T	A	11741.1	PASS	AC=2;AF=1;AN=2;DP=26581;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,494:494:99:14915,1473,0:0,0,217,277
chr1	228444741	.	C	T	590.94	PASS	AC=2;AF=0.711;AN=2;DP=2233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2384,200,0:0,0,12,55
chr1	228447432	.	T	G	5606.33	PASS	AC=1;AF=0.5;AN=2;DP=497;FS=1.79;FractionInformativeReads=1;MQ=60;MQRankSum=3.588;QD=11.28;ReadPosRankSum=-0.108;SOR=0.861;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:272,225:497:99:5635,0,6947:113,159,85,140
chr1	228451826	.	C	T	3707.2	PASS	AC=2;AF=0.583;AN=2;DP=9728;set=variant-variant2-variant4-variant5-variant8-variant12-variant14-variant18-variant20-variant24-variant27-variant29-variant32-variant34-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,538:538:99:16101,1601,0:0,0,283,255
chr1	228452032	.	G	A	5493.51	PASS	AC=1;AF=0.5;AN=2;DP=1429;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:226,241:467:99:5950,0,5317:98,128,101,140
chr1	228456147	.	T	C	1568.97	PASS	AC=2;AF=0.725;AN=2;DP=7980;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,164:164:99:5362,491,0:0,0,92,72
chr1	228461129	.	A	G	3233.38	PASS	AC=2;AF=0.72;AN=2;DP=22602;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,519:522:99:15933,1499,0:1,2,253,266
chr1	228461381	.	T	C	1117.76	PASS	AC=1;AF=0.5;AN=2;DP=497;FractionInformativeReads=1;MQ=60;set=variant3-variant22-variant25-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:913,0,874:10,23,16,17
chr1	228461408	.	A	AG	1405.81	PASS	AC=2;AF=1;AN=2;DP=2780;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1716,156,0:0,0,25,25
chr1	228463292	.	G	A	49.76	PASS	AC=1;AF=0.688;AN=2;DP=122;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant9-variant16-variant21-variant26-variant27-variant31-variant32-variant33-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:31:121,0,31:1,0,3,1
chr1	228463433	.	C	T	484.72	PASS	AC=1;AF=0.529;AN=2;DP=464;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant12-variant14-variant18-variant20-variant24-variant27-variant29-variant32-variant34-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:328,0,438:11,6,9,3
chr1	228464248	.	T	G	3602.24	PASS	AC=2;AF=0.72;AN=2;DP=10025;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,209:209:99:6278,626,0:0,0,113,96
chr1	228464276	.	T	C	3972.54	PASS	AC=2;AF=0.72;AN=2;DP=11227;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,243:243:99:7364,729,0:0,0,123,120
chr1	228464842	.	C	G	2767.85	PASS	AC=2;AF=0.72;AN=2;DP=8607;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:6042,551,0:0,0,87,97
chr1	228465370	.	T	G	1557.9	PASS	AC=2;AF=0.72;AN=2;DP=7064;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:4918,465,0:0,0,71,84
chr1	228465403	.	G	T	1316.09	PASS	AC=1;AF=0.5;AN=2;DP=1503;MQ=60;set=variant22-variant25-variant26-variant31-variant34-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,62:131:99:1413,0,1707:29,40,27,35
chr1	228465674	.	C	CAAG	73.17	PASS	AC=1;AF=0.684;AN=2;DP=567;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:99:419,0,185:2,2,2,9
chr1	228467711	.	G	A	2604.35	PASS	AC=1;AF=0.5;AN=2;DP=1106;MQ=60;set=variant22-variant25-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:98,95:193:99:2336,0,2828:50,48,51,44
chr1	228468244	.	G	A	3120.85	PASS	AC=1;AF=0.5;AN=2;DP=1436;MQ=60;set=variant22-variant25-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:118,99:217:99:2610,0,2861:56,62,48,51
chr1	228468458	.	G	A	941.91	PASS	AC=1;AF=0.526;AN=2;DP=1510;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant12-variant14-variant18-variant20-variant24-variant27-variant29-variant32-variant34-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:738,0,1058:11,28,12,20
chr1	228469870	.	C	T	1799.33	PASS	AC=1;AF=0.5;AN=2;DP=672;MQ=60;set=variant22-variant25-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,42:110:99:970,0,1785:27,41,17,25
chr1	228469903	.	A	T	1575.6	PASS	AC=1;AF=0.5;AN=2;DP=165;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,27:72:99:990,0,2527:14,31,11,16
chr1	228469904	.	G	T	1575.6	PASS	AC=1;AF=0.5;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,27:72:99:990,0,2527:14,31,11,16
chr1	228470995	.	G	T	954.16	PASS	AC=1;AF=0.526;AN=2;DP=1723;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant12-variant14-variant18-variant20-variant24-variant27-variant29-variant32-variant34-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,43:86:99:1329,0,1282:12,31,9,34
chr1	228472259	.	G	T	559.61	PASS	AC=1;AF=0.5;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant22-variant25-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,29:60:99:736,0,793:14,17,13,16
chr1	228472510	.	C	T	946.79	PASS	AC=1;AF=0.526;AN=2;DP=1469;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant12-variant14-variant18-variant20-variant24-variant27-variant29-variant32-variant34-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,40:84:99:1201,0,1348:25,19,29,11
chr1	228474809	.	G	A	536.21	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.28;QD=19.15;ReadPosRankSum=1.348;SOR=0.612;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,20:28:99:564,0,198:2,6,6,14
chr1	228475848	.	G	A	2418.78	PASS	AC=1;AF=0.526;AN=2;DP=5921;set=variant-variant2-variant4-variant5-variant8-variant9-variant12-variant14-variant18-variant20-variant24-variant27-variant29-variant32-variant34-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:165,162:327:99:4087,0,4292:90,75,79,83
chr1	228476366	.	G	T	3566.82	PASS	AC=1;AF=0.5;AN=2;DP=1136;MQ=60;set=variant22-variant25-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:96,99:195:99:3795,0,3748:53,43,50,49
chr1	228476367	.	A	T	3566.91	PASS	AC=1;AF=0.5;AN=2;DP=1134;MQ=60;set=variant22-variant25-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:97,101:198:99:3795,0,3748:53,44,50,51
chr1	228476414	.	G	A	2731.12	PASS	AC=1;AF=0.5;AN=2;DP=1265;MQ=60;set=variant22-variant25-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:100,116:216:99:3059,0,2406:50,50,62,54
chr1	228480282	.	A	G	1956.99	PASS	AC=2;AF=0.707;AN=2;DP=8741;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,214:214:99:6766,642,0:0,0,109,105
chr1	228480549	.	G	A	2483.89	PASS	AC=1;AF=0.5;AN=2;DP=195;FS=3.429;FractionInformativeReads=1;MQ=60;MQRankSum=0.245;QD=12.74;ReadPosRankSum=2.57;SOR=0.987;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,96:195:99:2512,0,2516:38,61,31,65
chr1	228480964	.	A	G	5231.05	PASS	AC=1;AF=0.633;AN=2;DP=4339;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,71:141:99:1798,0,1735:48,22,43,28
chr1	228482010	.	C	T	2769.5	PASS	AC=1;AF=0.571;AN=2;DP=11165;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:232,191:423:99:4816,0,5867:116,116,98,93
chr1	228482285	.	T	C	1611.76	PASS	AC=2;AF=0.707;AN=2;DP=3156;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:3093,249,0:0,0,22,61
chr1	228486524	.	G	A	1053.32	PASS	AC=1;AF=0.5;AN=2;DP=331;FractionInformativeReads=1;MQ=60;set=variant22-variant25-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:628,0,615:6,16,4,15
chr1	228492044	.	G	A	1330.67	PASS	AC=1;AF=0.571;AN=2;DP=6114;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:87,84:171:99:2391,0,2559:48,39,42,42
chr1	228494382	.	T	G,C	913.18	PASS	AC=1,1;AF=0.39,0.317;AN=2;DP=4578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:93:99:0,0,38,55
chr1	228494696	.	G	A	2238.09	PASS	AC=1;AF=0.565;AN=2;DP=3417;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,55:125:99:1419,0,1897:41,29,35,20
chr1	228495696	.	T	C	88.74	PASS	AC=2;AF=0.707;AN=2;DP=1047;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:586,51,0:0,0,12,5
chr1	228497053	.	A	G	813.29	PASS	AC=2;AF=0.707;AN=2;DP=3864;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2763,249,0:0,0,42,41
chr1	228497286	.	C	A	1062.76	PASS	AC=1;AF=0.5;AN=2;DP=466;FractionInformativeReads=1;MQ=60;set=variant22-variant25-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,31:83:99:734,0,1424:19,33,10,21
chr1	228497351	.	G	A	655.5	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.291;QD=21.15;ReadPosRankSum=-0.543;SOR=0.471;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,24:31:99:684,0,220:1,6,6,18
chr1	228503677	.	A	G	2547.96	PASS	AC=2;AF=0.707;AN=2;DP=11128;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,231:231:99:7218,691,0:0,0,134,97
chr1	228504239	.	G	T	100.96	PASS	AC=1;AF=0.589;AN=2;DP=387;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:142,0,277:6,3,4,1
chr1	228504472	.	T	C	1382.52	PASS	AC=2;AF=0.707;AN=2;DP=5676;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3797,372,0:0,0,64,60
chr1	228504670	.	C	T	190.31	PASS	AC=1;AF=0.554;AN=2;DP=1265;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:415,0,565:6,15,5,12
chr1	228504701	.	G	GCTCC	439.95	PASS	AC=2;AF=0.713;AN=2;DP=1100;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:63:894,63,0:0,0,6,14
chr1	228505204	.	G	A	3220.02	PASS	AC=1;AF=0.565;AN=2;DP=4295;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant18-variant19-variant22-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,76:155:99:1878,0,1970:42,37,40,36
chr1	228505668	.	C	G	2999.4	PASS	AC=2;AF=0.707;AN=2;DP=10705;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,245:245:99:7755,735,0:0,0,136,109
chr1	228505699	.	T	C	3038.83	PASS	AC=2;AF=0.707;AN=2;DP=12207;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,279:279:99:8826,836,0:0,0,151,128
chr1	228505727	.	C	T	3116.51	PASS	AC=1;AF=0.5;AN=2;DP=1664;MQ=60;set=variant22-variant25-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:145,146:291:99:3530,0,3722:74,71,68,78
chr1	228509427	.	A	G	2140.92	PASS	AC=2;AF=0.707;AN=2;DP=11236;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,242:243:99:7562,701,0:1,0,122,120
chr1	228520763	.	G	A	151.65	PASS	AC=1;AF=0.558;AN=2;DP=609;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:547,0,364:3,9,2,14
chr1	228520880	.	C	T	341.95	PASS	AC=1;AF=0.558;AN=2;DP=966;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:462,0,578:14,6,11,6
chr1	228520973	.	C	G	861.07	PASS	AC=1;AF=0.558;AN=2;DP=2734;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,41:85:99:979,0,1070:24,20,25,16
chr1	228522029	.	TA	T	70.54	PASS	AC=2;AF=0.613;AN=2;DP=634;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:808,60,0:0,0,19,1
chr1	228522047	.	A	T	209.08	PASS	AC=1;AF=0.558;AN=2;DP=706;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:390,0,449:13,3,11,1
chr1	228523412	.	G	A	734.73	PASS	AC=1;AF=0.5;AN=2;DP=413;FractionInformativeReads=1;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:531,0,640:17,8,16,4
chr1	228523442	.	T	C	733.14	PASS	AC=2;AF=0.597;AN=2;DP=2287;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3140,214,0:0,0,41,28
chr1	228523447	.	T	C	730.13	PASS	AC=2;AF=0.83;AN=2;DP=3406;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:3210,220,0:0,0,44,29
chr1	228523448	.	G	A	730.13	PASS	AC=1;AF=0.558;AN=2;DP=2015;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,37:73:99:901,0,782:21,15,23,14
chr1	228523618	.	G	A	786.57	PASS	AC=2;AF=0.597;AN=2;DP=2443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2429,236,0:0,0,29,50
chr1	228525898	.	C	G	372.19	PASS	AC=2;AF=0.597;AN=2;DP=1836;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1721,153,0:0,0,26,25
chr1	228526665	.	T	C	640.97	PASS	AC=2;AF=0.597;AN=2;DP=2832;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2474,230,0:0,0,27,50
chr1	228526742	.	CCACA	CCACACA,CCACACACACA,CCACACACA,CCA,C,CCACACACACACA	57.98	PASS	AC=0,0,0,2,0,0;AF=0.171,0.186,0.2,0.1,0.043,0.014;AN=2;DP=627;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/4:11:1:1,1,2,7
chr1	228527970	.	C	G	57.27	PASS	AC=1;AF=0.5;AN=2;DP=145;FractionInformativeReads=1;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:301,0,189:4,5,7,4
chr1	228528347	.	G	A	1565.51	PASS	AC=1;AF=0.5;AN=2;DP=169;FS=3.579;FractionInformativeReads=0.994;MQ=60;MQRankSum=-1.134;QD=9.26;ReadPosRankSum=4.473;SOR=0.477;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:90,78:168:99:1594,0,2208:54,36,42,36
chr1	228528412	.	G	A	2131.91	PASS	AC=1;AF=0.558;AN=2;DP=5547;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:94,97:191:99:2365,0,2248:49,45,48,49
chr1	228528563	.	C	G	1260.52	PASS	AC=2;AF=0.597;AN=2;DP=4911;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant12-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:4265,431,0:0,0,59,85
chr1	228529129	.	C	A	907.44	PASS	AC=1;AF=0.5;AN=2;DP=875;FractionInformativeReads=1;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,47:104:99:1291,0,1820:32,25,29,18
chr1	228529429	.	A	AGACGGCTCAGCCAGCCTGTGGCATGG	497.24	PASS	AC=2;AF=0.603;AN=2;DP=967;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant12-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:86:1325,86,0:0,0,3,25
chr1	228538470	.	C	G	1234	PASS	AC=1;AF=0.5;AN=2;DP=711;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,46:84:99:1202,0,930:24,14,30,16
chr1	228538968	.	C	T	332.37	PASS	AC=1;AF=0.55;AN=2;DP=195;FractionInformativeReads=1;MQ=60;set=variant9-variant12-variant20-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:395,0,296:7,3,10,6
chr1	228539300	.	G	A	134.62	PASS	AC=1;AF=0.72;AN=2;DP=1137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:262,0,385:4,8,5,7
chr1	228543800	.	C	T	992.35	PASS	AC=1;AF=0.5;AN=2;DP=699;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:983,0,881:23,7,24,9
chr1	228547256	.	G	A	917.72	PASS	AC=1;AF=0.5;AN=2;DP=809;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,63:114:99:1544,0,1313:29,22,33,30
chr1	228548197	.	G	A	2191.16	PASS	AC=1;AF=0.5;AN=2;DP=1611;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,105:177:99:2775,0,2084:34,38,58,47
chr1	228550426	.	C	T	1506.45	PASS	AC=1;AF=0.5;AN=2;DP=731;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,59:87:99:1566,0,980:8,20,20,39
chr1	228550446	.	G	A	552.6	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=3.704;FractionInformativeReads=1;MQ=60;MQRankSum=-0.59;QD=7.78;ReadPosRankSum=-1.015;SOR=0.343;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,24:71:99:581,0,1923:13,34,9,15
chr1	228552571	.	T	C	1900.63	PASS	AC=2;AF=0.556;AN=2;DP=1444;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4368,438,0:0,0,84,62
chr1	228553651	.	T	C	475.1	PASS	AC=2;AF=0.556;AN=2;DP=364;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1756,120,0:0,0,32,6
chr1	228553675	.	C	T	829.11	PASS	AC=2;AF=0.556;AN=2;DP=570;FractionInformativeReads=1;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2434,177,0:0,0,49,10
chr1	228555794	.	A	G	187.37	PASS	AC=2;AF=0.556;AN=2;DP=140;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:681,57,0:0,0,8,11
chr1	228555842	.	A	G	309.23	PASS	AC=1;AF=0.5;AN=2;DP=50;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:337,0,321:6,5,7,6
chr1	228556403	.	C	T	1244.09	PASS	AC=1;AF=0.5;AN=2;DP=837;FractionInformativeReads=1;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,43:86:99:1046,0,1146:26,17,29,14
chr1	228558313	.	A	G	1242.72	PASS	AC=1;AF=0.5;AN=2;DP=213;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,54:100:99:1271,0,1151:26,20,32,22
chr1	228559386	.	G	A	3038.45	PASS	AC=1;AF=0.5;AN=2;DP=829;MQ=60;set=variant19-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:119,153:272:99:3838,0,2894:56,63,73,80
chr1	228559994	.	C	T	3026.26	PASS	AC=2;AF=0.645;AN=2;DP=11916;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,302:302:99:8841,903,0:0,0,139,163
chr1	228560139	.	A	G	3565.31	PASS	AC=2;AF=0.943;AN=2;DP=5330;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2992,255,0:0,0,34,51
chr1	228560700	.	T	C	1357.63	PASS	AC=2;AF=0.707;AN=2;DP=5200;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4286,399,0:0,0,64,69
chr1	228564593	.	G	A	1185.66	PASS	AC=1;AF=0.5;AN=2;DP=137;FS=11.313;FractionInformativeReads=1;MQ=60;MQRankSum=-1.026;QD=8.65;ReadPosRankSum=0.372;SOR=1.556;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:86,51:137:99:1214,0,3127:41,45,16,35
chr1	228564601	.	C	T	2048.84	PASS	AC=1;AF=0.5;AN=2;DP=238;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,73:123:99:2077,0,1768:16,34,33,40
chr1	228564735	.	C	T	1449.08	PASS	AC=1;AF=0.5;AN=2;DP=151;FS=5.031;FractionInformativeReads=0.993;MQ=60;MQRankSum=0.859;QD=9.6;ReadPosRankSum=2.287;SOR=1.1;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,58:150:99:1477,0,2484:49,43,36,22
chr1	228564884	.	G	A	5054.78	PASS	AC=1;AF=0.5;AN=2;DP=2693;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:118,132:250:99:3137,0,2871:56,62,62,70
chr1	228565445	.	C	A	1364.42	PASS	AC=1;AF=0.5;AN=2;DP=758;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,43:83:99:1080,0,1120:20,20,13,30
chr1	228583954	.	GGGTCTGA	G	608.61	PASS	AC=1;AF=0.5;AN=2;DP=464;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:995,0,2330:11,20,14,12
chr1	228588680	.	A	C	983.34	PASS	AC=1;AF=0.5;AN=2;DP=911;MQ=60;set=variant3-variant9-variant10-variant18-variant22-variant25-variant27-variant35-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,39:66:99:1187,0,806:14,13,22,17
chr1	228593222	.	T	G	1370.08	PASS	AC=1;AF=0.5;AN=2;DP=797;MQ=60;set=variant9-variant22-variant25-variant27-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,50:89:99:1236,0,800:18,21,23,27
chr1	228594569	.	G	T	376.72	PASS	AC=2;AF=0.571;AN=2;DP=70;set=variant3-variant12-variant13-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:126,12,0:0,0,1,3
chr1	228601638	.	T	C	1133.15	PASS	AC=2;AF=0.563;AN=2;DP=2448;set=variant3-variant6-variant8-variant9-variant10-variant13-variant16-variant18-variant19-variant22-variant25-variant27-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3047,237,0:0,0,29,50
chr1	228601639	.	A	G	1203.37	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.276;QD=15.43;ReadPosRankSum=2.471;SOR=0.812;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,47:78:99:1232,0,699:12,19,17,30
chr1	228602660	.	G	C	2071.72	PASS	AC=2;AF=0.545;AN=2;DP=1706;MQ=60;set=variant9-variant10-variant18-variant22-variant25-variant27-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,137:138:99:4320,404,0:1,0,70,67
chr1	228604248	.	A	G	424.2	PASS	AC=2;AF=0.545;AN=2;DP=646;MQ=60;set=variant9-variant10-variant18-variant22-variant25-variant27-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1581,167,0:0,0,23,33
chr1	228612444	.	A	G	896.49	PASS	AC=1;AF=0.886;AN=2;DP=1483;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:365,0,473:12,10,9,8
chr1	228613052	.	T	C	2394.73	PASS	AC=1;AF=0.886;AN=2;DP=5635;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:55,68:123:99:1763,0,1260:22,33,27,41
chr1	228645063	.	A	G	4309.36	PASS	AC=1;AF=0.841;AN=2;DP=5718;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:74,58:132:99:1400,0,1995:47,27,39,19
chr1	228645799	.	C	T	1562.78	PASS	AC=1;AF=0.5;AN=2;DP=204;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,58:108:99:1591,0,1276:30,20,40,18
chr1	228646356	.	CGTGT	CGTGTGT,CGT,CGTGTGTGTGTGT,CGTGTGTGT,CGTGTGTGTGT,C	192.89	PASS	AC=0,0,0,0,1,1;AF=0.179,0.205,0.038,0.115,0.051,0.013;AN=2;DP=4133;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	6/5:53:99:0,0,8,45
chr1	228676824	.	C	T	371.11	PASS	AC=1;AF=0.5;AN=2;DP=131;FractionInformativeReads=1;MQ=60;set=variant10-variant18-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:439,0,532:2,15,1,12
chr1	228681913	.	CT	C	1684.64	PASS	AC=2;AF=0.568;AN=2;DP=2446;MQ=60;set=variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:4056,307,0:0,0,46,56
chr1	228682330	.	C	G	2867.51	PASS	AC=2;AF=0.852;AN=2;DP=3833;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2461,242,0:0,0,38,43
chr1	228786580	.	C	T	504.5	PASS	AC=1;AF=0.556;AN=2;DP=314;MQ=60;set=variant10-variant18-variant22-variant24-variant25-variant27-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:505,0,285:3,7,8,10
chr1	228871693	.	C	T	2890.71	PASS	AC=1;AF=0.529;AN=2;DP=4320;MQ=60;set=variant4-variant8-variant12-variant17-variant21-variant23-variant24-variant26-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,118:228:99:2754,0,2598:66,44,76,42
chr1	228873640	.	GT	G	421.75	PASS	AC=2;AF=0.652;AN=2;DP=513;MQ=60;set=variant4-variant8-variant10-variant12-variant13-variant17-variant18-variant21-variant23-variant24-variant26-variant27-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:783,63,0:0,0,3,18
chr1	228880021	.	C	T	3267.89	PASS	AC=1;AF=0.529;AN=2;DP=3733;MQ=60;set=variant4-variant8-variant12-variant17-variant21-variant23-variant24-variant26-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,91:221:99:2092,0,3274:63,67,48,43
chr1	228880098	.	T	A	1729.37	PASS	AC=1;AF=0.529;AN=2;DP=2061;MQ=60;set=variant4-variant8-variant12-variant17-variant21-variant23-variant24-variant26-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,47:122:99:1096,0,2112:30,45,16,31
chr1	228880135	.	C	T	923.44	PASS	AC=1;AF=0.529;AN=2;DP=1324;MQ=60;set=variant4-variant8-variant12-variant17-variant21-variant23-variant24-variant26-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,40:88:99:1152,0,1506:17,31,11,29
chr1	228880296	.	G	A	358.56	PASS	AC=1;AF=0.526;AN=2;DP=1069;MQ=60;set=variant4-variant8-variant10-variant12-variant13-variant17-variant21-variant23-variant24-variant26-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:736,0,514:7,10,14,9
chr1	228880466	.	G	A	814.34	PASS	AC=1;AF=0.529;AN=2;DP=962;MQ=60;set=variant4-variant8-variant12-variant17-variant21-variant23-variant24-variant26-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,29:66:99:901,0,1057:23,14,20,9
chr1	228881129	.	A	G	794.09	PASS	AC=2;AF=0.652;AN=2;DP=926;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant10-variant12-variant13-variant17-variant18-variant21-variant23-variant24-variant26-variant27-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1556,135,0:0,0,16,29
chr1	229178058	.	C	T	104.64	PASS	AC=1;AF=0.652;AN=2;DP=365;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:100,0,289:7,2,2,2
chr1	229385897	.	C	CGTGTGT,CGT,CGTGTGTGTGT,CGTGT,CGTGTGTGT	79.67	PASS	AC=0,2,0,0,0;AF=0.212,0.154,0.308,0.038,0.038;AN=2;DP=250;MQ=60;set=variant2-variant4-variant5-variant12-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:9:7:0,1,4,4
chr1	229407233	.	G	C	318.41	PASS	AC=1;AF=0.655;AN=2;DP=550;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:235,0,193:1,4,1,6
chr1	229422193	.	T	C	2240.65	PASS	AC=1;AF=0.773;AN=2;DP=1752;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:610,0,360:11,4,16,7
chr1	229431670	.	C	T	1066.19	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.559;QD=13.85;ReadPosRankSum=0.057;SOR=0.641;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,47:77:99:1094,0,792:11,19,18,29
chr1	229438828	.	G	A	507.1	PASS	AC=1;AF=0.79;AN=2;DP=506;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:207,0,308:2,8,1,6
chr1	229457208	.	C	A	9313.95	PASS	AC=2;AF=1;AN=2;DP=11875;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,259:259:99:8197,775,0:0,0,125,134
chr1	229477767	.	A	G	1702.36	PASS	AC=1;AF=0.528;AN=2;DP=2355;MQ=60;set=variant-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant23-variant26-variant29-variant30-variant33-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,79:136:99:1871,0,1464:35,22,42,37
chr1	229477934	.	C	T	844.38	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=2.909;FractionInformativeReads=1;MQ=60;MQRankSum=0.316;QD=20.59;ReadPosRankSum=2.241;SOR=0.347;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,27:41:99:873,0,378:4,10,11,16
chr1	229567187	.	G	GC	567.71	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=0.955;MQ=60;MQRankSum=-0.216;QD=12.9;ReadPosRankSum=3.673;SOR=0.602;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:605,0,424:11,7,14,10
chr1	229567384	.	G	T	1904.92	PASS	AC=1;AF=0.5;AN=2;DP=140;FS=1.335;FractionInformativeReads=1;MQ=60;MQRankSum=0.652;QD=13.61;ReadPosRankSum=1.16;SOR=0.585;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,78:140:99:1933,0,1730:36,26,43,35
chr1	229567663	.	C	G	2873.37	PASS	AC=1;AF=0.607;AN=2;DP=1985;MQ=60;set=variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant21-variant25-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,71:121:99:1932,0,1425:20,30,25,46
chr1	229568231	.	T	G	685.47	PASS	AC=2;AF=1;AN=2;DP=1233;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1466,117,0:0,0,6,33
chr1	229568632	.	A	G	5978.62	PASS	AC=1;AF=0.6;AN=2;DP=5026;MQ=60;set=variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:184,178:362:99:4266,0,4477:86,98,83,95
chr1	229568934	.	AG	A	1118.11	PASS	AC=1;AF=0.6;AN=2;DP=1421;MQ=60;set=variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,39:62:99:1006,0,499:5,18,9,30
chr1	229569579	.	GCTGA	G	235.59	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;MQ=60;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:439,0,889:8,2,9,2
chr1	229569592	.	C	T	513.47	PASS	AC=1;AF=0.6;AN=2;DP=344;MQ=60;set=variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:537,0,905:9,3,11,5
chr1	229569803	.	A	G	1171.48	PASS	AC=2;AF=0.694;AN=2;DP=3059;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3920,280,0:0,0,40,53
chr1	229569804	.	G	A	1171.48	PASS	AC=2;AF=0.694;AN=2;DP=3023;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3920,280,0:0,0,38,53
chr1	229576965	.	C	T	1645.82	PASS	AC=1;AF=0.6;AN=2;DP=2018;MQ=60;set=variant7-variant8-variant13-variant14-variant15-variant17-variant18-variant21-variant25-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,59:127:99:1517,0,1834:43,25,36,23
chr1	229577891	.	C	T	267.17	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.044;QD=14.84;ReadPosRankSum=0.044;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:295,0,283:1,7,2,8
chr1	229596260	.	A	G	152.47	PASS	AC=1;AF=0.65;AN=2;DP=95;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant15-variant17-variant18-variant21-variant25-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:151,0,185:4,1,4,1
chr1	229599439	.	A	C	259.62	PASS	AC=1;AF=0.5;AN=2;DP=85;FractionInformativeReads=1;MQ=60;set=variant14-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:451,0,438:6,13,9,11
chr1	229600884	.	T	C	83.42	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.684;QD=10.43;ReadPosRankSum=1.517;SOR=0.582;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:112,0,109:1,2,2,3
chr1	229602284	.	C	A	694.44	PASS	AC=1;AF=0.6;AN=2;DP=411;MQ=60;set=variant7-variant8-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:415,0,385:10,1,11,2
chr1	229611318	.	A	G	900.83	PASS	AC=1;AF=0.5;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant14-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,47:71:99:1258,0,585:12,12,25,22
chr1	229611555	.	C	T	145.69	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,14:19:99:475,0,172:0,5,2,12
chr1	229622162	.	A	G	585.18	PASS	AC=1;AF=0.579;AN=2;DP=1131;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,21:52:99:504,0,753:18,13,15,6
chr1	229622236	.	G	A	521.06	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=2.275;FractionInformativeReads=1;MQ=60;MQRankSum=-0.952;QD=10.02;ReadPosRankSum=1.282;SOR=0.889;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:549,0,618:14,13,11,14
chr1	229623137	.	T	C	592.87	PASS	AC=1;AF=0.579;AN=2;DP=605;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:345,0,485:13,5,10,4
chr1	229623338	.	T	C	907.45	PASS	AC=1;AF=0.579;AN=2;DP=935;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,30:56:99:786,0,645:8,18,9,21
chr1	229631193	.	T	C	378.77	PASS	AC=1;AF=0.583;AN=2;DP=548;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:426,0,599:15,6,12,2
chr1	229631324	.	T	C	1296.7	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=3.736;FractionInformativeReads=1;MQ=60;MQRankSum=-0.333;QD=13.1;ReadPosRankSum=1.482;SOR=0.698;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,52:99:99:1325,0,1158:21,26,28,24
chr1	229631734	.	T	C	1375.06	PASS	AC=1;AF=0.583;AN=2;DP=2111;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,61:107:99:1470,0,1094:20,26,27,34
chr1	229635083	.	T	C	476.34	PASS	AC=1;AF=0.5;AN=2;DP=232;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant16-variant20-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:403,0,601:4,16,3,11
chr1	229636388	.	A	G	139.31	PASS	AC=1;AF=0.579;AN=2;DP=210;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:273,0,361:9,1,8,0
chr1	229636561	.	C	T	1233.12	PASS	AC=1;AF=0.5;AN=2;DP=117;FS=1.5;FractionInformativeReads=1;MQ=60;MQRankSum=-1.275;QD=10.54;ReadPosRankSum=0.014;SOR=0.525;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,50:117:99:1261,0,1527:29,38,24,26
chr1	229637645	.	C	A	386.72	PASS	AC=1;AF=0.583;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:212,0,402:11,3,6,1
chr1	229644157	.	G	T	2140.46	PASS	AC=1;AF=0.583;AN=2;DP=2507;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,71:118:99:1748,0,1316:20,27,30,41
chr1	229663064	.	GAGGAA	G	4062.01	PASS	AC=2;AF=1;AN=2;DP=3625;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3868,268,0:0,0,47,42
chr1	229683264	.	G	A	587.09	PASS	AC=2;AF=0.6;AN=2;DP=682;FractionInformativeReads=1;set=variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant31-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1460,132,0:0,0,29,15
chr1	229693846	.	A	C	169.32	PASS	AC=2;AF=0.632;AN=2;DP=226;MQ=60;set=variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant31-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:284,33,0:0,0,6,5
chr1	229694557	.	T	TGCGCCC	247.54	PASS	AC=2;AF=0.6;AN=2;DP=379;MQ=60;set=variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant28-variant30-variant31-variant33-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:47:710,47,0:0,0,2,13
chr1	229735022	.	G	GT	2832.15	PASS	AC=1;AF=0.636;AN=2;DP=5618;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,73:136:99:1504,0,1335:21,42,26,47
chr1	229737227	.	G	A	7026.46	PASS	AC=1;AF=0.625;AN=2;DP=7189;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:150,131:281:99:3381,0,3750:60,90,50,81
chr1	229737835	.	T	C	1544.97	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=1.868;FractionInformativeReads=1;MQ=60;MQRankSum=1.191;QD=18.84;ReadPosRankSum=0.151;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,49:82:99:1573,0,990:20,13,26,23
chr1	229738170	.	T	G	3605.86	PASS	AC=2;AF=0.652;AN=2;DP=4405;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4636,447,0:0,0,79,71
chr1	229738236	.	G	A	1369.73	PASS	AC=2;AF=0.788;AN=2;DP=5426;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4112,418,0:0,0,70,70
chr1	229746019	.	C	T	3088.17	PASS	AC=2;AF=0.652;AN=2;DP=3079;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2805,267,0:0,0,37,52
chr1	229750089	.	T	C	1612.92	PASS	AC=1;AF=0.5;AN=2;DP=158;FS=2.907;FractionInformativeReads=1;MQ=60;MQRankSum=-1.106;QD=10.21;ReadPosRankSum=-1.989;SOR=0.983;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:96,62:158:99:1641,0,2659:45,51,25,37
chr1	229762054	.	T	A	3191.04	PASS	AC=2;AF=0.643;AN=2;DP=3613;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3938,328,0:0,0,60,48
chr1	229762071	.	C	T	1211.18	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=2.388;FractionInformativeReads=1;MQ=60;MQRankSum=-0.288;QD=10.81;ReadPosRankSum=1.552;SOR=0.791;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,54:112:99:1239,0,1442:28,30,29,25
chr1	229763237	.	T	G	287.38	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.061;QD=19.16;ReadPosRankSum=0.429;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:316,0,142:3,2,7,3
chr1	229768297	.	C	T	398.91	PASS	AC=2;AF=0.652;AN=2;DP=904;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:818,66,0:0,0,5,17
chr1	229770585	.	A	AT	85.12	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.493;QD=6.55;ReadPosRankSum=-0.101;SOR=0.551;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:122,0,121:6,1,5,1
chr1	229770827	.	C	T	1719.71	PASS	AC=1;AF=0.5;AN=2;DP=134;FS=3.113;FractionInformativeReads=1;MQ=60;MQRankSum=-0.318;QD=12.83;ReadPosRankSum=0.278;SOR=1.011;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,70:134:99:1748,0,1508:32,32,30,40
chr1	229772693	.	T	G	3468.93	PASS	AC=2;AF=0.652;AN=2;DP=4790;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,137:138:99:4363,368,0:1,0,77,60
chr1	229779124	.	C	T	578.93	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=1.238;FractionInformativeReads=1;MQ=60;MQRankSum=1.254;QD=14.84;ReadPosRankSum=0.07;SOR=0.963;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:607,0,505:10,8,13,8
chr1	229781532	.	T	G	591.69	PASS	AC=2;AF=0.661;AN=2;DP=548;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:777,60,0:0,0,17,3
chr1	229781744	.	T	C	4710.12	PASS	AC=2;AF=0.652;AN=2;DP=7106;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:5740,581,0:0,0,92,102
chr1	229783236	.	T	C	3333.64	PASS	AC=2;AF=0.932;AN=2;DP=3436;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3066,237,0:0,0,44,35
chr1	229783240	.	T	C	4417.22	PASS	AC=1;AF=0.636;AN=2;DP=2574;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,35:81:99:959,0,1180:27,19,18,17
chr1	229783328	.	G	C	1842.72	PASS	AC=1;AF=0.5;AN=2;DP=143;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.193;QD=12.89;ReadPosRankSum=2.082;SOR=0.684;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,78:143:99:1871,0,1549:36,29,43,35
chr1	229787055	.	G	A	1858.07	PASS	AC=1;AF=0.5;AN=2;DP=368;FractionInformativeReads=1;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:100,102:202:99:2465,0,2273:47,53,43,59
chr1	229787076	.	T	A	2057.55	PASS	AC=1;AF=0.5;AN=2;DP=189;FS=1.14;FractionInformativeReads=0.995;MQ=60;MQRankSum=-0.377;QD=10.89;ReadPosRankSum=2.286;SOR=0.583;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:96,92:188:99:2086,0,2279:41,55,42,50
chr1	229790048	.	A	G	1783.76	PASS	AC=2;AF=0.653;AN=2;DP=4892;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:4029,369,0:0,0,63,60
chr1	229795070	.	T	G	661.86	PASS	AC=2;AF=0.653;AN=2;DP=3291;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3212,299,0:0,0,47,53
chr1	229795330	.	T	C	939.01	PASS	AC=2;AF=0.625;AN=2;DP=2493;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2826,261,0:0,0,50,37
chr1	229795683	.	AT	A	695.61	PASS	AC=1;AF=0.609;AN=2;DP=2005;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:612,0,702:22,8,18,8
chr1	229795966	.	AT	A	1223.67	PASS	AC=2;AF=0.625;AN=2;DP=3344;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3267,286,0:0,0,19,76
chr1	230313911	.	T	C	1190.54	PASS	AC=1;AF=0.5;AN=2;DP=1424;MQ=60;set=variant-variant3-variant7-variant8-variant12-variant13-variant14-variant19-variant21-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,51:98:99:1219,0,1156:27,20,24,27
chr1	230371883	.	G	A	735.85	PASS	AC=2;AF=0.603;AN=2;DP=1914;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2692,227,0:0,0,30,46
chr1	230372061	.	A	G	642.49	PASS	AC=1;AF=0.55;AN=2;DP=710;MQ=60;set=variant13-variant14-variant17-variant19-variant27-variant30-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,35:71:99:922,0,884:17,19,17,18
chr1	230386341	.	T	A	1785.88	PASS	AC=2;AF=0.6;AN=2;DP=2989;set=variant-variant2-variant4-variant5-variant6-variant11-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3040,297,0:0,0,39,60
chr1	230391234	.	C	T	769.57	PASS	AC=2;AF=0.636;AN=2;DP=800;MQ=60;set=variant13-variant14-variant17-variant19-variant27-variant30-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2712,240,0:0,0,24,56
chr1	230398241	.	C	T	239.3	PASS	AC=2;AF=0.636;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant17-variant19-variant27-variant30-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:712,69,0:0,0,16,7
chr1	230398445	.	G	A	410.66	PASS	AC=2;AF=0.636;AN=2;DP=391;MQ=60;set=variant13-variant14-variant17-variant19-variant27-variant30-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1497,110,0:0,0,30,7
chr1	230410162	.	C	T	1089.33	PASS	AC=1;AF=0.563;AN=2;DP=947;MQ=60;set=variant-variant2-variant11-variant15-variant25-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,71:126:99:1679,0,1124:28,27,36,35
chr1	230410342	.	G	A	351.81	PASS	AC=1;AF=0.5;AN=2;DP=66;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:380,0,369:3,9,4,10
chr1	230415025	.	A	G	2412.05	PASS	AC=2;AF=0.65;AN=2;DP=6726;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,218:218:99:6574,653,0:0,0,116,102
chr1	230416218	.	T	C	1233.66	PASS	AC=2;AF=0.542;AN=2;DP=768;MQ=60;set=variant7-variant9-variant12-variant14-variant22-variant28-variant34-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2284,185,0:0,0,19,43
chr1	230416399	.	G	T	39.19	PASS	AC=2;AF=0.625;AN=2;DP=642;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1081,99,0:0,0,17,16
chr1	230416760	.	A	G	1610.85	PASS	AC=2;AF=0.577;AN=2;DP=1152;MQ=60;set=variant3-variant7-variant9-variant12-variant14-variant22-variant28-variant34-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,89:90:99:2808,235,0:1,0,43,46
chr1	230416953	.	A	G	1086.16	PASS	AC=2;AF=0.625;AN=2;DP=3360;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant22-variant23-variant25-variant26-variant28-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4366,420,0:0,0,80,60
chr1	230417056	.	G	C	1380.35	PASS	AC=2;AF=0.571;AN=2;DP=2154;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant11-variant12-variant15-variant25-variant26-variant28-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:5123,468,0:0,0,77,79
chr1	230417394	.	T	C	1451.63	PASS	AC=2;AF=0.556;AN=2;DP=835;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant14-variant22-variant28-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2711,266,0:0,0,42,47
chr1	230417557	.	T	C	1517.35	PASS	AC=2;AF=0.845;AN=2;DP=3359;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2671,181,0:0,0,37,23
chr1	230417560	.	A	G	1517.35	PASS	AC=2;AF=0.845;AN=2;DP=3349;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2671,181,0:0,0,36,23
chr1	230417664	.	C	G	2224.78	PASS	AC=2;AF=0.556;AN=2;DP=4161;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant22-variant23-variant25-variant26-variant28-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,125:126:99:3896,351,0:1,0,74,51
chr1	230417916	.	T	G	454.6	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=165;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:29,13:42:64:64,0,648:25,4,1,12
chr1	230417999	.	C	T	334.39	PASS	AC=2;AF=0.689;AN=2;DP=1181;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:1079,95,0:0,0,7,25
chr1	230451331	.	T	C	110.44	PASS	AC=1;AF=0.594;AN=2;DP=123;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant10-variant11-variant15-variant20-variant25-variant26-variant27-variant28-variant30-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:121,0,142:2,1,3,3
chr1	230451349	.	T	C	132.17	PASS	AC=1;AF=0.594;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant10-variant11-variant15-variant20-variant25-variant26-variant27-variant28-variant30-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:280,0,102:3,2,4,4
chr1	230451560	.	GCATA	G	52.73	PASS	AC=2;AF=0.833;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.731;ReadPosRankSum=0.731;set=variant26-variant28-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,1,1
chr1	230451589	.	C	T	58.54	PASS	AC=2;AF=1;AN=2;DP=20;FS=0;MQ=60;set=variant11-variant19-variant28-variant29-variant31-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,1,1
chr1	230451594	.	CTG	C	141.12	PASS	AC=2;AF=1;AN=2;DP=7;FS=0;MQ=60;set=variant28-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,1,1
chr1	230451935	.	C	CAT	673.24	PASS	AC=1;AF=0.878;AN=2;DP=2001;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,7:31:99:285,0,1649:15,9,5,2
chr1	230451978	.	G	A	993.77	PASS	AC=1;AF=0.888;AN=2;DP=2885;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,18:53:99:524,0,1972:21,14,10,8
chr1	230459083	.	C	T	827.76	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.322;QD=14.27;ReadPosRankSum=1.493;SOR=0.841;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:856,0,918:18,11,19,10
chr1	230459389	.	C	T	1516.93	PASS	AC=1;AF=0.5;AN=2;DP=150;FS=10.429;FractionInformativeReads=0.993;MQ=60;MQRankSum=1.439;QD=10.11;ReadPosRankSum=-0.135;SOR=0.265;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:78,71:149:99:1545,0,2059:24,54,32,39
chr1	230459433	.	GC	G	650.31	PASS	AC=1;AF=0.719;AN=2;DP=2153;MQ=60;set=variant2-variant3-variant4-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,34:70:99:849,0,1172:11,25,6,28
chr1	230459434	.	C	T	896.96	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=3.822;FractionInformativeReads=1;MQ=60;MQRankSum=-1.121;QD=12.63;ReadPosRankSum=0.293;SOR=0.305;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:925,0,1134:7,28,11,25
chr1	230497940	.	G	T	1827.68	PASS	AC=2;AF=0.763;AN=2;DP=3384;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,71:73:99:2205,197,0:2,0,50,21
chr1	230498061	.	C	T	1868.87	PASS	AC=1;AF=0.5;AN=2;DP=860;FractionInformativeReads=1;MQ=60;set=variant13-variant27-variant30-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:109,79:188:99:1965,0,2820:50,59,40,39
chr1	230498094	.	A	C	1531.77	PASS	AC=1;AF=0.5;AN=2;DP=762;MQ=60;set=variant13-variant27-variant30-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:93,76:169:99:1853,0,2234:45,48,38,38
chr1	230498191	.	T	C	1052.91	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.258;QD=15.72;ReadPosRankSum=1.028;SOR=0.689;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,37:67:99:1081,0,743:8,22,10,27
chr1	230498232	.	C	T	1084.63	PASS	AC=2;AF=0.763;AN=2;DP=1426;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1464,119,0:0,0,9,31
chr1	230503684	.	C	T	1188.6	PASS	AC=2;AF=0.756;AN=2;DP=2360;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2204,206,0:0,0,51,18
chr1	230503777	.	G	A	1764.87	PASS	AC=1;AF=0.5;AN=2;DP=179;FS=1.856;FractionInformativeReads=1;MQ=60;MQRankSum=1.04;QD=9.86;ReadPosRankSum=0.326;SOR=0.834;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,80:179:99:1793,0,2386:49,50,43,37
chr1	230504070	.	C	G	235.14	PASS	AC=2;AF=0.792;AN=2;DP=363;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:399,33,0:0,0,2,9
chr1	230513128	.	G	A	2007.27	PASS	AC=2;AF=0.763;AN=2;DP=2594;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1687,153,0:0,0,32,19
chr1	230561700	.	G	GC	459.58	PASS	AC=2;AF=1;AN=2;DP=681;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:382,36,0:0,0,4,8
chr1	230778243	.	AC	A	3583.12	PASS	AC=2;AF=0.643;AN=2;DP=2464;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant20-variant22-variant24-variant28-variant32-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3522,334,0:0,0,74,37
chr1	230778491	.	G	C	4029.16	PASS	AC=2;AF=0.793;AN=2;DP=5680;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4515,437,0:0,0,48,98
chr1	230795177	.	T	C	1396.63	PASS	AC=2;AF=0.803;AN=2;DP=1647;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1147,96,0:0,0,25,7
chr1	230796375	.	A	C	1123.42	PASS	AC=2;AF=0.659;AN=2;DP=556;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant20-variant22-variant24-variant26-variant28-variant32-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1017,81,0:0,0,23,4
chr1	230819155	.	TAAAAA	TAAAA,TAAA,TA,TAA,T	153.87	PASS	AC=0,0,0,1,0;AF=0.286,0.345,0.024,0.071,0.012;AN=2;DP=693;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/4:16:15:4,0,8,4
chr1	230819479	.	G	GT,GTT	658.59	PASS	AC=1,1;AF=0.714,0.129;AN=2;DP=1828;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant-variant30-variant31-variant32-variant33-variant34-variant41-variant42	GT:DP:GQ:SB	1/2:33:99:0,0,9,24
chr1	230820780	.	TA	T	1733.7	PASS	AC=1;AF=0.62;AN=2;DP=2315;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,51:89:99:1469,0,1008:25,13,36,15
chr1	230822607	.	G	A	203.7	PASS	AC=2;AF=0.837;AN=2;DP=920;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:628,45,0:0,0,14,1
chr1	230823947	.	C	A	205.87	PASS	AC=1;AF=0.75;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.341;ReadPosRankSum=-2.436;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:234,0,397:5,9,4,7
chr1	230825645	.	G	A	683.86	PASS	AC=1;AF=0.75;AN=2;DP=89;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.362;ReadPosRankSum=0.166;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:712,0,583:12,10,16,12
chr1	230841559	.	G	A	292.3	PASS	AC=1;AF=0.571;AN=2;DP=298;MQ=60;set=variant2-variant11-variant14-variant16-variant20-variant24-variant25-variant29-variant34-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:543,0,1138:12,6,11,2
chr1	230841561	.	G	A	515.22	PASS	AC=1;AF=0.75;AN=2;DP=47;FractionInformativeReads=1;MQ=60;MQRankSum=0.343;ReadPosRankSum=-0.38;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:543,0,1138:12,6,12,3
chr1	230841687	.	T	C	1895.07	PASS	AC=2;AF=0.92;AN=2;DP=4390;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2853,287,0:0,0,51,45
chr1	230845794	.	A	G	2012.81	PASS	AC=2;AF=0.656;AN=2;DP=5298;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4566,438,0:0,0,89,57
chr1	230849799	.	A	G	873.1	PASS	AC=2;AF=0.652;AN=2;DP=999;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1655,147,0:0,0,33,16
chr1	230849872	.	C	T	1600.46	PASS	AC=2;AF=0.652;AN=2;DP=1827;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2499,250,0:0,0,47,37
chr1	230850083	.	C	T	134.9	PASS	AC=1;AF=0.531;AN=2;DP=695;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant13-variant15-variant20-variant22-variant28-variant34-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:477,0,484:7,12,6,13
chr1	230883073	.	C	T	337.77	PASS	AC=2;AF=0.611;AN=2;DP=310;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant20-filterInvariant22-variant25-variant29-variant31-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:991,104,0:0,0,22,13
chr1	230883466	.	C	T	902.95	PASS	AC=2;AF=0.567;AN=2;DP=2507;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2364,248,0:0,0,35,49
chr1	230883484	.	T	C	564.74	PASS	AC=2;AF=0.671;AN=2;DP=2838;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2294,213,0:0,0,26,45
chr1	230883499	.	T	C	446.73	PASS	AC=2;AF=0.671;AN=2;DP=2337;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1994,183,0:0,0,18,43
chr1	230891248	.	C	T	574.61	PASS	AC=1;AF=0.611;AN=2;DP=617;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant23-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:699,0,356:0,10,1,18
chr1	230910485	.	CTTT	CTT,CT,C	63.73	PASS	AC=0,0,1;AF=0.353,0.118,0.029;AN=2;DP=629;set=filterInvariant3-variant5-variant8-variant11-variant12-filterInvariant13-variant15-variant17-variant20-variant22-variant27-filterInvariant31-filterInvariant38-variant40-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	0/3:14:39:1,4,0,9
chr1	230914729	.	A	C	1521.49	PASS	AC=2;AF=0.579;AN=2;DP=1628;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant12-variant14-variant20-variant21-variant22-variant23-variant24-variant25-variant29-variant34-variant35-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2166,209,0:0,0,32,38
chr1	230916137	.	G	A	1249	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=5.658;FractionInformativeReads=1;MQ=60;MQRankSum=-0.086;QD=14.87;ReadPosRankSum=2.111;SOR=1.118;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,48:84:99:1277,0,909:19,17,19,29
chr1	230916587	.	G	A	196.84	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.01;QD=11.58;ReadPosRankSum=-0.048;SOR=0.569;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:225,0,273:2,7,2,6
chr1	230923151	.	T	C	683.42	PASS	AC=1;AF=0.5;AN=2;DP=590;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant14-variant21-variant24-variant29-variant34-variant35-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:614,0,794:21,8,15,8
chr1	230925954	.	G	A	555.53	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=6.618;FractionInformativeReads=1;MQ=60;MQRankSum=0.494;QD=13.55;ReadPosRankSum=2.846;SOR=0.343;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,25:41:99:584,0,383:5,11,13,12
chr1	230927353	.	T	A	219.11	PASS	AC=1;AF=0.641;AN=2;DP=721;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:430,0,373:10,2,12,1
chr1	230927871	.	T	C	233.38	PASS	AC=1;AF=0.641;AN=2;DP=955;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:362,0,298:4,10,6,7
chr1	230928351	.	C	T	1166.65	PASS	AC=2;AF=0.667;AN=2;DP=981;MQ=60;set=variant5-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1446,120,0:0,0,14,26
chr1	230928512	.	C	G	1323.61	PASS	AC=1;AF=0.597;AN=2;DP=3539;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,46:104:99:1039,0,1534:34,24,28,18
chr1	230928540	.	T	C	1416.05	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=3.831;QD=10.04;ReadPosRankSum=0.847;SOR=0.737;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,61:141:99:1444,0,1961:45,35,35,26
chr1	230933898	.	C	T	841.76	PASS	AC=1;AF=0.55;AN=2;DP=1787;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant23-variant27-variant28-variant30-variant31-variant32-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,38:67:99:953,0,736:19,10,25,13
chr1	230937683	.	T	G	2054.92	PASS	AC=1;AF=0.5;AN=2;DP=168;FS=0.564;FractionInformativeReads=1;MQ=60;MQRankSum=-0.999;QD=12.23;ReadPosRankSum=-0.173;SOR=0.748;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:88,80:168:99:2083,0,2119:45,43,42,38
chr1	230973407	.	G	T	115.45	PASS	AC=1;AF=0.782;AN=2;DP=903;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,5:21:99:118,0,455:7,9,4,1
chr1	230973707	.	T	G	760.01	PASS	AC=1;AF=0.5;AN=2;DP=143;MQ=60;set=variant9-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:509,0,624:13,12,10,9
chr1	230974260	.	TA	T,TAA	106.53	PASS	AC=1,0;AF=0.462,0.038;AN=2;DP=425;MQ=60;set=variant2-filterInvariant5-variant8-variant9-variant18-filterInvariant19-filterInvariant22-variant23-filterInvariant26-filterInvariant27-filterInvariant31-variant41-variant42	GT:DP:GQ:SB	0/1:20:99:5,4,6,5
chr1	230974329	.	A	G	771.55	PASS	AC=1;AF=0.5;AN=2;DP=197;FractionInformativeReads=1;MQ=60;set=variant9-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,35:67:99:950,0,888:20,12,19,16
chr1	230974774	.	T	C	1428.04	PASS	AC=1;AF=0.768;AN=2;DP=4779;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,59:129:99:1558,0,1763:44,26,33,26
chr1	230975083	.	C	A	654.79	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=2.177;FractionInformativeReads=1;MQ=60;MQRankSum=-0.872;QD=11.1;ReadPosRankSum=3.176;SOR=0.812;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,29:59:99:683,0,805:14,16,16,13
chr1	230979058	.	G	A	1667.8	PASS	AC=1;AF=0.5;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:75,69:144:99:1696,0,2012:53,22,43,26
chr1	230979082	.	C	T	2190.23	PASS	AC=1;AF=0.5;AN=2;DP=401;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:105,93:198:99:2218,0,2710:68,37,56,37
chr1	230979207	.	C	A	3882.99	PASS	AC=1;AF=0.5;AN=2;DP=583;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:155,151:306:99:3911,0,4356:87,68,82,69
chr1	230979247	.	G	A	4163.92	PASS	AC=1;AF=0.5;AN=2;DP=593;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:173,157:330:99:4192,0,4807:93,80,91,66
chr1	230979655	.	A	G	1208.73	PASS	AC=1;AF=0.5;AN=2;DP=130;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,40:71:99:1237,0,839:10,21,11,29
chr1	230979680	.	A	T	820.22	PASS	AC=1;AF=0.5;AN=2;DP=88;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:848,0,596:7,13,8,19
chr1	230991682	.	C	T	352.24	PASS	AC=1;AF=0.5;AN=2;DP=148;MQ=60;set=variant10-variant15-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:370,0,372:5,8,7,6
chr1	231005143	.	A	C	310.86	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=4.01;FractionInformativeReads=1;MQ=60;MQRankSum=0.249;QD=14.8;ReadPosRankSum=-0.107;SOR=1.675;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:339,0,255:4,5,3,9
chr1	231047310	.	TAC	T	400.56	PASS	AC=1;AF=0.8;AN=2;DP=703;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:204,0,489:6,7,2,4
chr1	231048298	.	G	C	400.39	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.594;QD=10.82;ReadPosRankSum=-1.783;SOR=0.673;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:429,0,562:13,7,11,6
chr1	231057021	.	G	A	237.67	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.362;QD=12.51;ReadPosRankSum=-1.61;SOR=0.76;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:266,0,175:5,3,7,4
chr1	231057310	.	C	T	43.44	PASS	AC=1;AF=0.839;AN=2;DP=245;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:72:148,0,72:2,2,1,4
chr1	231059784	.	C	T	268.18	PASS	AC=1;AF=0.788;AN=2;DP=801;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:289,0,486:3,11,3,6
chr1	231064578	.	T	TCTC	253.6	PASS	AC=1;AF=0.833;AN=2;DP=339;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:237,0,192:4,1,4,2
chr1	231069652	.	A	C	566.74	PASS	AC=1;AF=0.788;AN=2;DP=1099;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:302,0,208:2,6,3,7
chr1	231081304	.	T	G	274.65	PASS	AC=1;AF=0.686;AN=2;DP=771;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:324,0,385:2,10,2,9
chr1	231091972	.	C	T	250.87	PASS	AC=1;AF=0.646;AN=2;DP=493;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant12-variant14-variant15-variant17-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant33-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:187,0,235:6,3,5,3
chr1	231092180	.	G	A	587.86	PASS	AC=1;AF=0.591;AN=2;DP=1450;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant29-variant32-variant33-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,34:69:99:822,0,746:16,19,13,21
chr1	231092211	.	T	TG	515.72	PASS	AC=1;AF=0.591;AN=2;DP=1188;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant29-variant32-variant33-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:787,0,921:13,18,11,16
chr1	231093785	.	CT	C	366.45	PASS	AC=2;AF=0.77;AN=2;DP=784;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:173,18,0:0,0,5,1
chr1	231094050	.	GAA	GA,GAAA,G	355.26	PASS	AC=1,0,0;AF=0.443,0.071,0.043;AN=2;DP=1839;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant22-variant23-variant25-variant26-filterInvariant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant39-filterInvariant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:31:99:6,9,7,9
chr1	231154921	.	C	CT,CTT,CTTT	5210.18	PASS	AC=1,1,0;AF=0.545,0.398,0.011;AN=2;DP=11192;set=Intersection	GT:DP:GQ:SB	1/2:196:99:8,6,83,99
chr1	231161773	.	C	T	209.53	PASS	AC=1;AF=0.583;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant17-variant19-variant22-variant24-variant25-variant32-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:96:96,0,286:7,3,3,0
chr1	231161817	.	TA	TAA,T,TAAA	36.59	PASS	AC=0,1,0;AF=0.21,0.242,0.113;AN=2;DP=710;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant15-variant17-variant20-variant22-variant23-variant24-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:16:42:3,1,5,7
chr1	231176064	.	GC	G	248.13	PASS	AC=1;AF=0.591;AN=2;DP=232;MQ=60;set=variant2-variant4-variant7-variant10-variant15-variant18-variant21-variant24-variant25-variant27-variant28-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:47:78,0,47:1,1,2,1
chr1	231297992	.	A	G	788.23	PASS	AC=2;AF=1;AN=2;DP=1109;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:756,81,0:0,0,13,14
chr1	231298031	.	C	G	1031.49	PASS	AC=2;AF=1;AN=2;DP=1172;FS=0;MQ=60;MQRankSum=-1.448;ReadPosRankSum=0.869;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1399,96,0:0,0,18,14
chr1	231298037	.	T	G	1031.49	PASS	AC=2;AF=1;AN=2;DP=1158;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1424,99,0:0,0,18,15
chr1	231298456	.	G	A	468.15	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=8.463;FractionInformativeReads=1;MQ=60;MQRankSum=-1.108;QD=9.96;ReadPosRankSum=1.452;SOR=1.27;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:496,0,757:11,16,13,7
chr1	231298937	.	C	T	4254.76	PASS	AC=2;AF=0.75;AN=2;DP=226;FS=0;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,130:131:99:4283,379,0:0,1,54,76
chr1	231299621	.	G	A	1677.88	PASS	AC=1;AF=0.5;AN=2;DP=222;FS=7.939;FractionInformativeReads=1;MQ=60;MQRankSum=-1.514;QD=7.56;ReadPosRankSum=-2.019;SOR=0.367;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:139,83:222:99:1706,0,3621:86,53,43,40
chr1	231320720	.	A	T	312.88	PASS	AC=2;AF=0.6;AN=2;DP=192;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant10-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:513,45,0:0,0,10,5
chr1	231321943	.	C	A	1301.61	PASS	AC=2;AF=0.6;AN=2;DP=1727;MQ=60;set=variant4-variant7-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant24-variant27-variant28-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1627,162,0:0,0,25,29
chr1	231322043	.	A	G	882.26	PASS	AC=2;AF=0.6;AN=2;DP=852;MQ=60;set=variant4-variant7-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant24-variant27-variant28-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,30:31:47:808,47,0:1,0,10,20
chr1	231323140	.	T	A	151.77	PASS	AC=2;AF=1;AN=2;DP=311;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:394,27,0:0,0,9,0
chr1	231323339	.	A	G	655.13	PASS	AC=1;AF=0.542;AN=2;DP=1048;MQ=60;set=variant4-variant10-variant11-variant13-variant14-variant16-variant17-variant24-variant27-variant28-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,35:70:99:872,0,1015:16,19,15,20
chr1	231334780	.	C	A	1889.3	PASS	AC=1;AF=0.55;AN=2;DP=1882;MQ=60;set=variant10-variant11-variant13-variant14-variant16-variant17-variant27-variant28-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:92,103:195:99:2302,0,2134:48,44,55,48
chr1	231336897	.	A	C	712.68	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=1.721;FractionInformativeReads=1;MQ=60;MQRankSum=-0.411;QD=21.6;ReadPosRankSum=1.195;SOR=1.255;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,23:33:99:741,0,351:7,3,18,5
chr1	231337031	.	C	A	1257.15	PASS	AC=2;AF=0.583;AN=2;DP=1725;MQ=60;set=variant4-variant10-variant11-variant13-variant14-variant16-variant17-variant24-variant27-variant28-variant34-variant41	GT:AD:DP:GQ:PL:SB	1/1:3,150:153:99:4446,397,0:1,2,86,64
chr1	231344589	.	C	T	974.03	PASS	AC=1;AF=0.5;AN=2;DP=201;MQ=60;set=variant7-variant9-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,29:59:99:775,0,839:19,11,21,8
chr1	231351624	.	G	A	1028.41	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.25;QD=18.36;ReadPosRankSum=0.108;SOR=0.657;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,32:56:99:1057,0,754:13,11,17,15
chr1	231351979	.	T	A	737.87	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=3.528;FractionInformativeReads=0.984;MQ=60;MQRankSum=-0.035;QD=11.71;ReadPosRankSum=2.044;SOR=0.597;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:766,0,1104:14,20,15,13
chr1	231352767	.	A	G	1577.36	PASS	AC=2;AF=0.625;AN=2;DP=1689;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,50:52:99:1602,107,0:1,1,31,19
chr1	231353335	.	G	GA	520.45	PASS	AC=2;AF=0.625;AN=2;DP=219;MQ=60;set=variant10-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1386,147,0:0,0,31,18
chr1	231353462	.	A	G	1834.8	PASS	AC=2;AF=0.583;AN=2;DP=823;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant10-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4739,468,0:0,0,85,71
chr1	231355059	.	G	A	738.86	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.255;QD=12.52;ReadPosRankSum=-2.198;SOR=0.607;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:767,0,732:15,12,17,15
chr1	231355070	.	G	A	978.27	PASS	AC=2;AF=0.638;AN=2;DP=1864;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1976,183,0:0,0,35,26
chr1	231355918	.	C	G	4342.72	PASS	AC=2;AF=0.625;AN=2;DP=2425;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:3754,256,0:0,0,36,49
chr1	231355919	.	G	T	4342.72	PASS	AC=2;AF=0.625;AN=2;DP=2394;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:3754,256,0:0,0,36,49
chr1	231356082	.	T	C	676.61	PASS	AC=1;AF=0.5;AN=2;DP=222;FractionInformativeReads=1;MQ=60;set=variant4-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:804,0,712:13,17,17,18
chr1	231356102	.	A	G	725.07	PASS	AC=1;AF=0.5;AN=2;DP=224;FractionInformativeReads=1;MQ=60;set=variant4-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,37:64:99:937,0,726:12,15,19,18
chr1	231356301	.	C	T	787	PASS	AC=1;AF=0.5;AN=2;DP=188;FractionInformativeReads=1;MQ=60;set=variant4-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,28:48:99:785,0,506:11,9,13,15
chr1	231356559	.	A	G	753.41	PASS	AC=2;AF=0.625;AN=2;DP=1521;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1847,171,0:0,0,30,27
chr1	231356799	.	A	G	678.48	PASS	AC=1;AF=0.5;AN=2;DP=165;FractionInformativeReads=1;MQ=60;set=variant10-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,28:41:99:884,0,316:5,8,10,18
chr1	231357102	.	G	C	4557.02	PASS	AC=1;AF=0.58;AN=2;DP=2154;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,49:90:99:1876,0,1852:19,22,24,25
chr1	231357109	.	C	G	4744.67	PASS	AC=1;AF=0.58;AN=2;DP=2047;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,46:80:99:1792,0,1722:16,18,22,24
chr1	231359931	.	C	T	1234.33	PASS	AC=2;AF=0.667;AN=2;DP=331;FractionInformativeReads=1;MQ=60;set=variant4-variant24-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3286,291,0:0,0,40,57
chr1	231360962	.	T	C	1493.3	PASS	AC=2;AF=0.583;AN=2;DP=1113;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant8-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1729,150,0:0,0,23,27
chr1	231377081	.	C	T	2116.78	PASS	AC=1;AF=0.694;AN=2;DP=3330;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:811,0,1142:24,20,18,17
chr1	231401204	.	T	C	903.98	PASS	AC=1;AF=0.567;AN=2;DP=900;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant11-variant14-variant17-variant18-variant23-variant26-variant27-variant28-variant29-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:626,0,586:8,14,6,16
chr1	231401596	.	T	C	2097.64	PASS	AC=1;AF=0.681;AN=2;DP=2898;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,44:79:99:1043,0,815:13,22,16,28
chr1	231401902	.	G	A	4926.56	PASS	AC=2;AF=0.708;AN=2;DP=5534;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4147,384,0:0,0,69,59
chr1	231406275	.	GTAAGA	G	283.69	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.256;QD=21.82;ReadPosRankSum=1.855;SOR=1.27;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:321,0,186:4,1,7,1
chr1	231406295	.	T	C	694.22	PASS	AC=1;AF=0.681;AN=2;DP=535;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:257,0,275:7,2,7,1
chr1	231468953	.	G	A	3514.47	PASS	AC=2;AF=0.718;AN=2;DP=9835;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,218:218:99:7250,652,0:0,0,103,115
chr1	231473476	.	A	ACATCGC	8397.6	PASS	AC=1;AF=0.5;AN=2;DP=461;FS=1.088;FractionInformativeReads=0.911;MQ=60;MQRankSum=2.093;QD=18.22;ReadPosRankSum=1.042;SOR=0.619;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:207,213:420:99:8435,0,8703:108,99,107,106
chr1	231480303	.	A	G	504.23	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.503;QD=18.01;ReadPosRankSum=-2.901;SOR=0.622;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,18:28:99:532,0,224:7,3,12,6
chr1	231486989	.	A	C	709.82	PASS	AC=2;AF=0.718;AN=2;DP=2133;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1795,155,0:0,0,41,11
chr1	231487017	.	T	C	1080.6	PASS	AC=1;AF=0.692;AN=2;DP=3154;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,38:69:99:1525,0,1163:20,11,29,9
chr1	231487019	.	A	G	1496.85	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=5.308;FractionInformativeReads=1;MQ=60;MQRankSum=-0.899;QD=21.38;ReadPosRankSum=1.076;SOR=1.42;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,39:70:99:1525,0,1163:20,11,30,9
chr1	231488322	.	A	G	2833.63	PASS	AC=1;AF=0.5;AN=2;DP=292;FS=0.912;FractionInformativeReads=1;MQ=60;MQRankSum=0.987;QD=9.7;ReadPosRankSum=0.568;SOR=0.616;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:172,120:292:99:2862,0,4287:98,74,66,54
chr1	231488524	.	C	T	1277.86	PASS	AC=1;AF=0.684;AN=2;DP=4848;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,64:131:99:1670,0,1893:23,44,28,36
chr1	231489353	.	G	T	5356.22	PASS	AC=2;AF=0.711;AN=2;DP=13074;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,296:296:99:9198,888,0:0,0,118,178
chr1	231489425	.	T	C	1895.32	PASS	AC=1;AF=0.5;AN=2;DP=258;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,65:136:99:1944,0,2190:22,49,17,48
chr1	231489780	.	T	A	800.31	PASS	AC=1;AF=0.5;AN=2;DP=114;FS=0.741;FractionInformativeReads=1;MQ=60;MQRankSum=-1.367;QD=7.02;ReadPosRankSum=-0.64;SOR=0.794;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:76,38:114:99:829,0,1954:42,34,22,16
chr1	231490105	.	C	T	2466.59	PASS	AC=2;AF=0.718;AN=2;DP=6644;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4409,417,0:0,0,62,77
chr1	231490819	.	A	AT	39.79	PASS	AC=1;AF=0.726;AN=2;DP=320;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:51:117,0,51:0,2,0,4
chr1	231499396	.	G	A	250.82	PASS	AC=1;AF=0.5;AN=2;DP=33;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:230,0,311:8,1,7,1
chr1	231499429	.	G	C	283.07	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,20:37:99:536,0,489:13,4,15,5
chr1	231500096	.	G	C	1457.43	PASS	AC=1;AF=0.5;AN=2;DP=159;FS=0.599;FractionInformativeReads=1;MQ=60;MQRankSum=-1.125;QD=9.17;ReadPosRankSum=-0.724;SOR=0.63;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:98,61:159:99:1486,0,2759:45,53,29,32
chr1	231500277	.	T	A	2798.29	PASS	AC=1;AF=0.5;AN=2;DP=641;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:198,164:362:99:3747,0,4933:102,96,88,76
chr1	231500353	.	A	AT	6108.21	PASS	AC=1;AF=0.679;AN=2;DP=16886;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:207,186:393:99:4488,0,5124:101,106,90,96
chr1	231501168	.	A	G	721.9	PASS	AC=1;AF=0.5;AN=2;DP=112;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,40:65:99:1070,0,705:5,20,14,26
chr1	231502244	.	A	T	2087.98	PASS	AC=1;AF=0.5;AN=2;DP=370;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:92,90:182:99:2445,0,3131:30,62,25,65
chr1	231502245	.	T	A	1174.94	PASS	AC=1;AF=0.526;AN=2;DP=6751;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,72:175:99:1259,0,3795:31,72,22,50
chr1	231557255	.	C	G	1590.33	PASS	AC=1;AF=0.55;AN=2;DP=972;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant12-variant14-variant18-variant23-variant27-variant28-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,30:78:99:675,0,1138:17,31,9,21
chr1	231558170	.	G	A	137.85	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.566;QD=8.62;ReadPosRankSum=-1.133;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:166,0,614:7,4,3,2
chr1	231558178	.	G	A	254.87	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.292;QD=12.74;ReadPosRankSum=-1.368;SOR=0.787;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:283,0,602:7,4,6,3
chr1	231558452	.	A	C	518.07	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=2.388;FractionInformativeReads=1;MQ=60;MQRankSum=1.531;QD=10.16;ReadPosRankSum=0.827;SOR=0.73;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,22:51:99:546,0,878:16,13,10,12
chr1	231560082	.	T	G	1602.21	PASS	AC=1;AF=0.5;AN=2;DP=130;FS=2.212;FractionInformativeReads=1;MQ=60;MQRankSum=-1.104;QD=12.32;ReadPosRankSum=-1.356;SOR=0.903;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,63:130:99:1630,0,1759:32,35,27,36
chr1	231560775	.	G	GT	733.24	PASS	AC=1;AF=0.538;AN=2;DP=771;MQ=60;set=variant4-variant8-variant9-variant19-variant20-variant23-variant25-variant30-variant32-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,32:56:99:824,0,596:3,21,8,24
chr1	231664471	.	C	T	935.05	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0.977;FractionInformativeReads=1;MQ=60;MQRankSum=-0.768;QD=13.75;ReadPosRankSum=0.891;SOR=0.874;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,36:68:99:963,0,935:21,11,25,11
chr1	231664753	.	T	A	882.8	PASS	AC=1;AF=0.55;AN=2;DP=472;MQ=60;set=variant-variant12-variant14-variant18-variant23-variant27-variant28-variant29-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,28:54:99:890,0,753:6,20,8,20
chr1	231697030	.	G	A	498.53	PASS	AC=1;AF=0.712;AN=2;DP=401;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:141,0,288:1,7,0,4
chr1	231727447	.	A	G	1428.4	PASS	AC=1;AF=0.742;AN=2;DP=4469;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant25-variant26-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,67:146:99:1673,0,2027:35,44,24,43
chr1	231762413	.	T	TGTGTGCGC,TGTGTGTGTGC,TGTGTGTGTGTGC,TGTATGTCTGTGTGTGTGTGTGTGTGTGCGC,TGTATGTCTGTGTGTGTGTGTGTGTGTGTGC,TGTATGTCTGTGTGTGTGTGTGTGTGTGTGTGC	267.92	PASS	AC=0,2,0,0,0,0;AF=0.013,0.474,0.115,0.051,0.013,0.013;AN=2;DP=1157;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:35:87:1,1,18,15
chr1	231858993	.	GA	G	451.89	PASS	AC=2;AF=0.966;AN=2;DP=1824;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1039,102,0:0,0,22,12
chr1	231859838	.	T	C	1493.64	PASS	AC=1;AF=0.5;AN=2;DP=113;FS=0.763;FractionInformativeReads=1;MQ=60;MQRankSum=-0.79;QD=13.22;ReadPosRankSum=-0.146;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,58:113:99:1522,0,1408:18,37,17,41
chr1	231906589	.	C	T	1257.34	PASS	AC=1;AF=0.5;AN=2;DP=1834;MQ=60;set=variant2-variant7-variant13-variant14-variant16-variant21-variant23-variant25-variant27-variant28-variant29-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,46:94:99:1232,0,1098:26,22,23,23
chr1	231936016	.	A	G	1849.76	PASS	AC=2;AF=1;AN=2;DP=2552;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1194,96,0:0,0,8,24
chr1	231954427	.	C	T	799.89	PASS	AC=2;AF=0.731;AN=2;DP=2670;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2178,179,0:0,0,20,40
chr1	231954609	.	G	A	1241.41	PASS	AC=1;AF=0.5;AN=2;DP=1517;MQ=60;set=variant2-variant3-variant7-variant12-variant16-variant17-variant18-variant24-variant25-variant26-variant27-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:920,0,698:21,8,18,15
chr1	231954872	.	C	T	577.04	PASS	AC=1;AF=0.64;AN=2;DP=1283;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant20-variant21-variant22-variant23-variant28-variant32-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:630,0,536:9,14,7,16
chr1	231956086	.	A	T	1928.79	PASS	AC=1;AF=0.684;AN=2;DP=2437;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:522,0,438:7,9,8,14
chr1	231957460	.	CTT	CTTT,C,CT	38.72	PASS	AC=2,0,0;AF=0.25,0.15,0.2;AN=2;DP=148;MQ=60;set=filterInvariant3-variant4-variant7-variant10-variant16-variant19-variant21-variant34-variant37-variant41	GT:DP:GQ:SB	1/1:3:9:0,0,0,3
chr1	232002392	.	A	G	1773.18	PASS	AC=2;AF=0.625;AN=2;DP=3299;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant26-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3093,288,0:0,0,51,45
chr1	232094729	.	G	A	555.98	PASS	AC=1;AF=0.587;AN=2;DP=320;MQ=60;set=variant2-variant3-variant4-variant5-variant10-variant11-variant13-variant15-variant17-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:225,0,196:0,5,0,6
chr1	232098847	.	C	T	509.23	PASS	AC=1;AF=0.5;AN=2;DP=384;FractionInformativeReads=1;MQ=60;set=variant10-variant23-variant29-variant30-variant33-variant35-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,21:40:99:764,0,1250:4,15,5,16
chr1	232098859	.	C	G	362.91	PASS	AC=1;AF=0.556;AN=2;DP=313;FractionInformativeReads=1;MQ=60;set=variant10-variant23-variant29-variant30-variant33-variant35-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:642,0,1180:2,13,3,13
chr1	232144871	.	A	G	627.65	PASS	AC=2;AF=0.75;AN=2;DP=90;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.215;ReadPosRankSum=-1.828;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1762,135,0:0,0,14,31
chr1	232145203	.	T	TTTAC,TTTAA	592.73	PASS	AC=0,2;AF=0.478,0.217;AN=2;DP=197;MQ=60;set=variant2-variant3-variant4-variant10-variant11-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant25-variant27-variant28-variant29-variant33-variant35-variant36-variant37-variant40-variant41-variant42	GT:DP:GQ:SB	2/2:6:18:0,0,4,2
chr1	232172381	.	C	T	531.75	PASS	AC=1;AF=0.5;AN=2;DP=80;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:420,0,502:11,8,12,3
chr1	232174173	.	T	C	3900.04	PASS	AC=2;AF=0.625;AN=2;DP=3096;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2974,279,0:0,0,51,42
chr1	232174775	.	T	C	573.94	PASS	AC=2;AF=0.625;AN=2;DP=955;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:818,75,0:0,0,11,14
chr1	232175268	.	A	G	476.84	PASS	AC=1;AF=0.5;AN=2;DP=218;FractionInformativeReads=1;MQ=60;set=variant10-variant21-variant27-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:565,0,768:11,11,5,13
chr1	232175421	.	A	G	1120.98	PASS	AC=1;AF=0.5;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,44:96:99:1177,0,1578:34,18,30,14
chr1	232175697	.	G	GCTGT	2572.16	PASS	AC=2;AF=0.625;AN=2;DP=1793;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2673,181,0:0,0,17,43
chr1	232176306	.	G	A	311.63	PASS	AC=1;AF=0.58;AN=2;DP=943;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:561,0,518:8,12,12,9
chr1	232533667	.	T	C	725.37	PASS	AC=1;AF=0.575;AN=2;DP=819;MQ=60;set=variant2-variant3-variant7-variant8-variant14-variant18-variant22-variant23-variant24-variant26-variant27-variant29-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:572,0,625:16,1,15,2
chr1	232534776	.	C	T	784.75	PASS	AC=1;AF=0.522;AN=2;DP=1465;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant16-variant18-variant25-variant27-variant30-variant31-variant33-variant34-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,33:72:99:729,0,1048:22,17,17,16
chr1	232534815	.	G	A	944.05	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=0.778;FractionInformativeReads=1;MQ=60;MQRankSum=2.055;QD=9.94;ReadPosRankSum=0.372;SOR=0.813;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,41:95:99:972,0,1370:30,24,24,17
chr1	232534957	.	T	C	1202.18	PASS	AC=1;AF=0.575;AN=2;DP=2684;MQ=60;set=variant2-variant3-variant7-variant8-variant14-variant18-variant22-variant23-variant24-variant26-variant27-variant29-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,72:140:99:1742,0,1612:34,34,31,41
chr1	232535030	.	C	T	3366.55	PASS	AC=2;AF=1;AN=2;DP=4642;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3462,341,0:0,0,54,60
chr1	232564096	.	CTTTT	CTTT,CTT,CTTTTT,C	95.49	PASS	AC=0,0,0,1;AF=0.3,0.2,0.02,0.02;AN=2;DP=601;set=variant-variant4-variant5-variant8-filterInvariant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant23-variant24-filterInvariant25-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant41	GT:DP:GQ:SB	0/4:19:85:6,0,9,4
chr1	232568293	.	A	G	1511.77	PASS	AC=2;AF=0.92;AN=2;DP=2859;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2289,198,0:0,0,19,47
chr1	232579748	.	C	T	82.43	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.851;QD=8.24;ReadPosRankSum=0.336;SOR=0.25;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:111,0,153:1,4,2,3
chr1	232597987	.	T	A	1733.42	PASS	AC=1;AF=0.577;AN=2;DP=1826;MQ=60;set=variant9-variant12-variant20-variant25-variant28-variant30-variant31-variant32-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,69:132:99:1748,0,2450:35,28,37,32
chr1	232597995	.	T	C	1511.2	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=0.641;FractionInformativeReads=1;MQ=60;MQRankSum=3.037;QD=11.19;ReadPosRankSum=4.461;SOR=0.807;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,63:135:99:1539,0,2763:38,34,35,28
chr1	232650750	.	A	G	8663.53	PASS	AC=2;AF=0.977;AN=2;DP=12375;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,281:281:99:8908,842,0:0,0,134,147
chr1	232941354	.	G	T	2165.88	PASS	AC=1;AF=0.5;AN=2;DP=1691;MQ=60;set=variant6-variant11-variant12-variant18-variant21-variant24-variant26-variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,101:156:99:2457,0,1273:24,31,51,50
chr1	232941652	.	G	A	1814.5	PASS	AC=1;AF=0.5;AN=2;DP=315;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:89,81:170:99:1843,0,2346:53,36,44,37
chr1	232944926	.	A	T	1207.09	PASS	AC=1;AF=0.567;AN=2;DP=1025;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant9-variant11-variant12-variant18-variant20-variant21-variant24-variant26-variant32-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:707,0,1052:15,21,11,17
chr1	232945126	.	A	G	1637.89	PASS	AC=1;AF=0.5;AN=2;DP=529;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:96,93:189:99:2318,0,2565:61,35,53,40
chr1	233091276	.	CTTT	CTT,C,CT,CTTTT	214.73	PASS	AC=1,0,0,0;AF=0.393,0.018,0.071,0.018;AN=2;DP=1164;set=variant-variant2-variant5-variant7-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant17-filterInvariant19-variant20-variant21-filterInvariant22-variant24-variant26-variant27-variant29-variant31-variant33-filterInvariant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:48:99:15,12,6,15
chr1	233137225	.	CATAA	C	52.73	PASS	AC=2;AF=0.98;AN=2;DP=137;FS=0;MQ=60;MQRankSum=2.219;ReadPosRankSum=-0.361;set=variant-variant2-variant5-variant6-variant8-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant29-variant33-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,3,1
chr1	233150270	.	T	C	455.29	PASS	AC=1;AF=0.636;AN=2;DP=268;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant16-variant18-variant21-variant22-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:178,0,239:6,2,5,0
chr1	233152910	.	A	AAAAGCAAGATTTTGAGTCCTCACAGCTATTCT	1069.08	PASS	AC=1;AF=0.62;AN=2;DP=993;set=variant-variant2-variant3-variant4-variant5-variant8-variant11-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:453,0,2127:4,5,3,10
chr1	233193578	.	C	A	3148.39	PASS	AC=1;AF=0.607;AN=2;DP=1268;set=variant-variant2-variant3-variant4-variant8-variant11-variant15-variant18-variant21-variant27-variant28-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,38:55:99:1119,0,438:13,4,29,9
chr1	233193599	.	C	CA,CAA	1254.67	PASS	AC=1,0;AF=0.744,0.012;AN=2;DP=5143;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:84:99:33,14,24,13
chr1	233193800	.	C	T	2681.48	PASS	AC=1;AF=0.594;AN=2;DP=1339;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant11-variant15-variant18-variant21-variant24-variant27-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,34:77:99:924,0,1193:15,28,17,17
chr1	233194199	.	C	T	3105.05	PASS	AC=1;AF=0.594;AN=2;DP=1961;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant11-variant15-variant18-variant21-variant24-variant27-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,49:117:99:1103,0,1610:40,28,21,28
chr1	233194351	.	A	G	2494.32	PASS	AC=1;AF=0.594;AN=2;DP=912;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant11-variant15-variant18-variant21-variant24-variant27-variant28-variant33-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,23:58:99:516,0,1000:10,25,9,14
chr1	233296399	.	A	AG	129.82	PASS	AC=1;AF=0.782;AN=2;DP=819;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:228,0,383:1,10,1,6
chr1	233296891	.	T	C	1043.81	PASS	AC=1;AF=0.731;AN=2;DP=3186;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:1175,0,1424:15,12,16,13
chr1	233296897	.	C	T	1224.36	PASS	AC=1;AF=0.5;AN=2;DP=158;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:1253,0,1418:15,12,19,13
chr1	233296908	.	T	G	1276.03	PASS	AC=1;AF=0.731;AN=2;DP=3499;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:924,0,898:19,14,20,14
chr1	233297155	.	A	G	233.61	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=4.548;FractionInformativeReads=1;MQ=60;MQRankSum=-1.848;QD=9.73;ReadPosRankSum=-1.371;SOR=1.949;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:262,0,460:5,10,1,8
chr1	233336044	.	T	A	900.46	PASS	AC=1;AF=0.528;AN=2;DP=1592;MQ=60;set=variant2-variant4-variant7-variant9-variant11-variant12-variant16-variant17-variant22-variant25-variant26-variant33-variant34-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:869,0,1235:14,30,12,23
chr1	233336129	.	CTTT	CTTTT,CTT,CTTTTT,C	66.12	PASS	AC=0,1,0,0;AF=0.077,0.269,0.077,0.077;AN=2;DP=354;set=variant2-filterInvariant3-variant4-variant6-filterInvariant13-filterInvariant28-filterInvariant29-variant32-filterInvariant35-filterInvariant38-variant39-variant41-variant44	GT:DP:GQ:SB	0/2:9:14:1,2,0,6
chr1	233353951	.	A	G	482.58	PASS	AC=1;AF=0.542;AN=2;DP=211;MQ=60;set=variant2-variant4-variant9-variant11-variant22-variant25-variant26-variant33-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:320,0,284:6,4,3,7
chr1	233353955	.	CAAAAAAAA	C,CAA	401.88	PASS	AC=1,0;AF=0.538,0.038;AN=2;DP=208;set=variant2-variant4-variant9-variant11-variant22-variant25-variant26-variant33-variant34-variant35-variant37-variant40-variant41	GT:DP:GQ:SB	0/1:18:99:6,3,3,6
chr1	233353992	.	CT	C	91.37	PASS	AC=2;AF=0.7;AN=2;DP=57;FS=0;set=variant2-variant4-variant9-variant26-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,7:8:3:223,3,0:1,0,0,7
chr1	233354017	.	T	C	116.71	PASS	AC=1;AF=0.75;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQRankSum=0.731;ReadPosRankSum=-0.731;set=variant2-variant4-variant9-variant25-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:0,5:5:6:183,0,6:0,0,0,5
chr1	233362930	.	G	A	2305.81	PASS	AC=1;AF=0.545;AN=2;DP=2436;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant15-variant16-variant17-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,29:79:99:708,0,1425:29,21,18,11
chr1	233395214	.	T	A	588.62	PASS	AC=1;AF=0.705;AN=2;DP=635;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:371,0,263:0,8,0,10
chr1	233397267	.	G	A	402.88	PASS	AC=1;AF=0.5;AN=2;DP=354;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant10-variant17-variant18-variant23-variant31-variant32-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:174,0,269:3,5,1,5
chr1	233397752	.	T	C	4099.22	PASS	AC=1;AF=0.577;AN=2;DP=3865;MQ=60;set=variant2-variant6-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,75:145:99:1815,0,1775:42,28,40,35
chr1	233398670	.	C	A	624	PASS	AC=1;AF=0.577;AN=2;DP=524;FractionInformativeReads=1;set=variant2-variant6-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:349,0,433:11,1,10,0
chr1	233398713	.	C	T	1123.39	PASS	AC=1;AF=0.577;AN=2;DP=1118;FractionInformativeReads=1;set=variant2-variant6-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:567,0,823:21,7,16,7
chr1	233398927	.	C	G	2151.69	PASS	AC=1;AF=0.577;AN=2;DP=1030;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:534,0,825:7,15,3,12
chr1	233398931	.	G	GC	2032.26	PASS	AC=1;AF=0.577;AN=2;DP=964;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:502,0,828:6,15,3,10
chr1	233398993	.	C	A	635.56	PASS	AC=2;AF=0.604;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant24-variant25-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:312,21,0:0,0,0,7
chr1	233508430	.	G	A	1875.92	PASS	AC=1;AF=0.52;AN=2;DP=2411;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant24-variant26-variant27-variant31-variant32-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,45:95:99:1383,0,1465:32,18,27,18
chr1	233508564	.	G	A	3584.58	PASS	AC=1;AF=0.618;AN=2;DP=8516;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,110:225:99:2696,0,2763:60,55,58,52
chr1	233511913	.	TAGAG	T	688.62	PASS	AC=1;AF=0.542;AN=2;DP=493;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant15-variant20-variant25-variant29-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:678,0,1322:4,19,4,14
chr1	233512340	.	G	A	1275.89	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.015;QD=12.63;ReadPosRankSum=-1.525;SOR=0.66;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,50:101:99:1304,0,1135:22,29,22,28
chr1	233512437	.	G	A	430.56	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.375;QD=19.57;ReadPosRankSum=0.99;SOR=0.776;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:459,0,244:1,7,2,12
chr1	233515209	.	T	C	2613.66	PASS	AC=1;AF=0.5;AN=2;DP=187;FS=1.823;FractionInformativeReads=0.995;MQ=60;MQRankSum=1.148;QD=13.98;ReadPosRankSum=0.362;SOR=0.542;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:83,103:186:99:2642,0,1846:36,47,49,54
chr1	233515413	.	G	A	1436.99	PASS	AC=1;AF=0.567;AN=2;DP=3511;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,61:102:99:1529,0,1004:12,29,29,32
chr1	233517964	.	T	C	303.02	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=6.245;FractionInformativeReads=1;MQ=60;MQRankSum=0.736;QD=17.82;ReadPosRankSum=1.868;SOR=0.051;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,13:17:99:331,0,123:4,0,7,6
chr1	233518682	.	G	A	7637.01	PASS	AC=2;AF=0.636;AN=2;DP=15534;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,415:416:99:13641,1202,0:0,1,183,232
chr1	233518753	.	T	C	6832.5	PASS	AC=2;AF=0.636;AN=2;DP=16304;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,413:413:99:15501,1239,0:0,0,185,228
chr1	233518754	.	G	A	4648.47	PASS	AC=1;AF=0.5;AN=2;DP=412;FS=0;FractionInformativeReads=0.998;MQ=60;MQRankSum=1.26;QD=11.28;ReadPosRankSum=-1.099;SOR=0.704;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:215,196:411:99:4677,0,5550:96,119,87,109
chr1	233518885	.	T	C	1981.53	PASS	AC=2;AF=0.679;AN=2;DP=4983;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,113:114:99:4106,330,0:1,0,33,80
chr1	233518983	.	G	GT	3228.75	PASS	AC=2;AF=0.636;AN=2;DP=5176;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:6407,439,0:0,0,74,63
chr1	233518998	.	C	T	3573.12	PASS	AC=2;AF=0.636;AN=2;DP=5865;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:6801,481,0:0,0,85,73
chr1	233519277	.	A	G	1315.41	PASS	AC=2;AF=0.636;AN=2;DP=2800;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3203,294,0:0,0,57,41
chr1	233519393	.	C	T	3412.15	PASS	AC=2;AF=0.744;AN=2;DP=10604;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,223:223:99:7234,669,0:0,0,126,97
chr1	233519825	.	C	T	4138.08	PASS	AC=2;AF=0.636;AN=2;DP=9804;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,234:234:99:7576,701,0:0,0,98,136
chr1	233520144	.	A	G	5028.39	PASS	AC=2;AF=0.636;AN=2;DP=12444;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,345:348:99:10909,954,0:2,1,186,159
chr1	233520199	.	T	G	5293.46	PASS	AC=2;AF=0.636;AN=2;DP=13290;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,378:379:99:11834,1089,0:0,1,204,174
chr1	233520316	.	A	AG	5874.76	PASS	AC=2;AF=0.744;AN=2;DP=12869;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,268:269:99:9846,805,0:0,1,110,158
chr1	233520845	.	T	C	3012.12	PASS	AC=2;AF=0.636;AN=2;DP=6361;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4982,450,0:0,0,49,101
chr1	233520909	.	T	C	990.25	PASS	AC=2;AF=0.636;AN=2;DP=2378;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2060,159,0:0,0,7,46
chr1	233520965	.	G	A	196.99	PASS	AC=2;AF=0.636;AN=2;DP=620;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:641,45,0:0,0,1,14
chr1	233749855	.	A	G	267.33	PASS	AC=1;AF=0.802;AN=2;DP=846;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:537,0,282:8,4,14,5
chr1	233749896	.	C	CTTGGCTTTGGCT	1210.13	PASS	AC=2;AF=0.611;AN=2;DP=1370;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant25-variant26-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2512,177,0:0,0,38,14
chr1	233759918	.	T	C	1046.44	PASS	AC=1;AF=0.571;AN=2;DP=1121;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant10-variant12-variant16-variant17-variant22-variant29-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,34:82:99:859,0,1121:24,24,19,15
chr1	233759939	.	C	T	1028.17	PASS	AC=1;AF=0.6;AN=2;DP=398;MQ=60;set=variant9-variant10-variant16-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,36:83:99:865,0,1083:22,25,18,18
chr1	233765332	.	G	A	1100.07	PASS	AC=1;AF=0.595;AN=2;DP=422;MQ=60;set=variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant24-variant28-variant29-variant30-variant31-variant34-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:176,0,238:6,4,4,3
chr1	233765691	.	A	G	111.17	PASS	AC=1;AF=0.6;AN=2;DP=320;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant16-variant17-variant20-variant24-variant28-variant29-variant30-variant31-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:65:204,0,65:1,2,2,5
chr1	233766251	.	T	C	1954.83	PASS	AC=1;AF=0.567;AN=2;DP=1217;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant10-variant11-variant16-variant20-variant24-variant29-variant30-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,36:90:99:910,0,1710:42,12,27,9
chr1	233767008	.	T	A	1091.94	PASS	AC=1;AF=0.579;AN=2;DP=2032;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant16-variant20-variant24-variant29-variant30-variant34-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,47:93:99:1209,0,1075:23,23,20,27
chr1	233767023	.	A	G	988.2	PASS	AC=1;AF=0.579;AN=2;DP=1977;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant16-variant20-variant24-variant29-variant30-variant34-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,46:90:99:1216,0,1078:21,23,18,28
chr1	233767059	.	T	C	821.41	PASS	AC=1;AF=0.579;AN=2;DP=1616;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant16-variant20-variant24-variant29-variant30-variant34-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,38:76:99:1026,0,998:15,23,15,23
chr1	233785786	.	A	C	1088.44	PASS	AC=1;AF=0.63;AN=2;DP=2374;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,46:82:99:1325,0,840:15,21,18,28
chr1	233807465	.	G	A	5234.97	PASS	AC=1;AF=0.619;AN=2;DP=4098;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant24-variant27-variant29-variant30-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,74:184:99:1776,0,2731:59,51,38,36
chr1	233807885	.	CTA	C	5853.99	PASS	AC=1;AF=0.619;AN=2;DP=3055;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant24-variant27-variant29-variant30-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,77:155:99:2937,0,3082:48,30,45,32
chr1	234040742	.	A	C	2353.78	PASS	AC=2;AF=0.656;AN=2;DP=6018;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:3950,401,0:0,0,81,53
chr1	234041422	.	G	C	3261.85	PASS	AC=2;AF=0.641;AN=2;DP=11899;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,341:342:99:10250,991,0:1,0,180,161
chr1	234442257	.	A	T	464.08	PASS	AC=1;AF=0.5;AN=2;DP=318;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant11-variant13-variant25-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:480,0,248:6,5,9,9
chr1	234442376	.	G	A	566.48	PASS	AC=1;AF=0.743;AN=2;DP=1006;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:230,0,439:5,10,5,5
chr1	234444761	.	TA	T,TAAAAA,TAAAA,TAA	369.39	PASS	AC=2,0,0,0;AF=0.486,0.243,0.057,0.029;AN=2;DP=287;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:6:7:1,0,4,1
chr1	234452542	.	G	A	1721.63	PASS	AC=1;AF=0.5;AN=2;DP=1219;MQ=60;set=variant5-variant6-variant16-variant19-variant24-variant27-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,60:133:99:1380,0,1757:34,39,26,34
chr1	234454405	.	A	C	345.81	PASS	AC=2;AF=1;AN=2;DP=593;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:803,57,0:0,0,17,2
chr1	234458668	.	G	A	106.42	PASS	AC=1;AF=0.586;AN=2;DP=653;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant28-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:231,0,509:12,4,7,2
chr1	234509259	.	G	C	4129.57	PASS	AC=2;AF=0.771;AN=2;DP=5359;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4186,387,0:0,0,79,50
chr1	234509858	.	GT	G	187.73	PASS	AC=2;AF=0.711;AN=2;DP=580;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:613,42,0:0,0,7,7
chr1	234509865	.	T	G	196.77	PASS	AC=2;AF=0.655;AN=2;DP=444;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:649,45,0:0,0,8,7
chr1	234509972	.	A	G	424.41	PASS	AC=1;AF=0.5;AN=2;DP=216;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:656,0,674:18,10,18,9
chr1	234510262	.	A	G	1236.07	PASS	AC=2;AF=0.683;AN=2;DP=1279;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:898,84,0:0,0,11,17
chr1	234519385	.	T	C	168.72	PASS	AC=2;AF=0.646;AN=2;DP=236;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant27-variant28-variant31-variant33-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:299,21,0:0,0,7,0
chr1	234519452	.	C	CT	1093.32	PASS	AC=2;AF=0.771;AN=2;DP=1137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,30:32:39:779,39,0:1,1,23,7
chr1	234527575	.	C	T	505.75	PASS	AC=1;AF=0.667;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant21-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:67:236,0,67:0,2,1,5
chr1	234528006	.	A	G	279.76	PASS	AC=1;AF=0.773;AN=2;DP=375;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:64:64,0,286:5,2,2,1
chr1	234529552	.	C	T	2426.49	PASS	AC=1;AF=0.645;AN=2;DP=2632;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:1244,0,1770:13,24,13,22
chr1	234529570	.	G	A	2201.5	PASS	AC=1;AF=0.65;AN=2;DP=2141;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:1123,0,1626:11,20,9,19
chr1	234541801	.	A	G	3440.46	PASS	AC=1;AF=0.571;AN=2;DP=777;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant12-variant24-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,58:105:99:1436,0,1092:23,24,26,32
chr1	234546384	.	T	C	951.62	PASS	AC=1;AF=0.583;AN=2;DP=157;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant12-variant24-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,11:33:99:298,0,521:10,12,4,7
chr1	234563060	.	T	C	1364.44	PASS	AC=1;AF=0.625;AN=2;DP=2407;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant10-variant15-variant17-variant21-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,42:105:99:809,0,1456:36,27,20,22
chr1	234563556	.	T	A	161.39	PASS	AC=1;AF=0.545;AN=2;DP=307;MQ=60;set=variant-variant2-variant3-variant11-variant16-variant20-variant24-variant29-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:407,0,515:2,14,3,11
chr1	234564864	.	GAA	G	1561.71	PASS	AC=1;AF=0.545;AN=2;DP=667;MQ=60;set=variant-variant2-variant3-variant11-variant16-variant20-variant24-variant29-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:913,0,1006:16,10,15,9
chr1	234565078	.	G	GA,GAA	733.29	PASS	AC=0,1;AF=0.182,0.364;AN=2;DP=895;MQ=60;set=variant-variant2-variant3-variant11-variant16-variant20-variant24-variant29-variant31-variant41-variant42	GT:DP:GQ:SB	0/2:81:99:28,18,20,15
chr1	234565787	.	G	A	656.74	PASS	AC=1;AF=0.545;AN=2;DP=628;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant11-variant16-variant20-variant24-variant29-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:507,0,526:13,9,13,7
chr1	234566085	.	A	G	693.71	PASS	AC=1;AF=0.545;AN=2;DP=869;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant11-variant16-variant20-variant24-variant29-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,17:51:99:474,0,969:17,17,6,11
chr1	234566195	.	G	A	366.89	PASS	AC=1;AF=0.545;AN=2;DP=368;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant11-variant16-variant20-variant24-variant29-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:394,0,377:5,9,8,10
chr1	234569032	.	A	AC	140.7	PASS	AC=1;AF=0.545;AN=2;DP=160;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant11-variant16-variant20-variant24-variant29-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:312,0,273:8,0,8,1
chr1	234569192	.	T	C	1044.11	PASS	AC=1;AF=0.545;AN=2;DP=1319;MQ=60;set=variant-variant2-variant3-variant11-variant16-variant20-variant24-variant29-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,53:112:99:1327,0,1548:32,27,29,24
chr1	234573171	.	A	C	1906.71	PASS	AC=1;AF=0.5;AN=2;DP=1463;MQ=60;set=variant2-variant16-variant20-variant24-variant29-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,79:152:99:1872,0,1787:37,36,39,40
chr1	234573357	.	G	C	558.8	PASS	AC=1;AF=0.597;AN=2;DP=860;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:212,0,401:3,9,2,6
chr1	234582457	.	C	T	313.43	PASS	AC=2;AF=0.683;AN=2;DP=401;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:57:727,57,0:0,0,15,3
chr1	234582461	.	G	A	92.44	PASS	AC=1;AF=0.528;AN=2;DP=311;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant13-variant19-variant23-variant25-variant27-variant28-variant33-variant34-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:365,0,293:8,2,10,2
chr1	234582651	.	T	C	1396.02	PASS	AC=1;AF=0.542;AN=2;DP=3780;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,87:161:99:2061,0,1798:34,40,41,46
chr1	234584231	.	C	T	1342.7	PASS	AC=1;AF=0.542;AN=2;DP=4352;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,108:186:99:2631,0,2057:46,32,59,49
chr1	234584445	.	C	T	103.16	PASS	AC=1;AF=0.563;AN=2;DP=424;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:496,0,630:1,15,0,14
chr1	234584446	.	G	A	364.71	PASS	AC=1;AF=0.5;AN=2;DP=281;MQ=60;set=variant2-variant10-variant16-variant20-variant21-variant22-variant23-variant24-variant29-variant31-variant34-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:552,0,523:0,13,1,15
chr1	234594947	.	T	C	450.89	PASS	AC=1;AF=0.545;AN=2;DP=528;MQ=60;set=variant2-variant10-variant13-variant17-variant18-variant23-variant34-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,27:39:99:710,0,272:10,2,18,9
chr1	234596202	.	T	A	530.23	PASS	AC=1;AF=0.558;AN=2;DP=857;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant12-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:393,0,307:1,9,2,11
chr1	234608725	.	A	AT,ATT	205.29	PASS	AC=1,0;AF=0.714,0.167;AN=2;DP=164;FS=0;MQ=60;set=variant2-variant3-variant6-variant10-variant13-variant17-variant21-variant22-variant23-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:9:87:1,4,0,4
chr1	234613860	.	A	G	898.11	PASS	AC=1;AF=0.5;AN=2;DP=306;MQ=60;set=variant11-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,41:100:99:933,0,1303:36,23,22,19
chr1	234614698	.	C	T	304.07	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=1.32;FractionInformativeReads=1;MQ=60;MQRankSum=-0.277;QD=8.94;ReadPosRankSum=-2.74;SOR=0.988;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:332,0,431:9,10,6,9
chr1	234614879	.	C	A	43.7	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.307;QD=4.86;ReadPosRankSum=-0.876;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:72:72,0,114:2,3,2,2
chr1	234740141	.	G	A	9313.05	PASS	AC=2;AF=0.816;AN=2;DP=10244;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,289:289:99:8640,862,0:0,0,164,125
chr1	234740549	.	A	C	1021.18	PASS	AC=2;AF=0.55;AN=2;DP=657;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant10-variant22-variant26-variant31-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1518,135,0:0,0,18,27
chr1	234740561	.	T	C	793.75	PASS	AC=1;AF=0.5;AN=2;DP=114;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:757,0,562:10,12,13,12
chr1	234740880	.	C	T	4026.78	PASS	AC=2;AF=0.639;AN=2;DP=5237;MQ=60;set=variant3-variant4-variant5-variant9-variant10-variant16-variant18-variant22-variant26-variant30-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,258:258:99:8294,773,0:0,0,148,110
chr1	234740917	.	C	CAGTTATAAT	21857.9	PASS	AC=2;AF=0.816;AN=2;DP=14154;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,293:293:99:13730,933,0:0,0,164,129
chr1	234743237	.	G	A	3085.21	PASS	AC=2;AF=0.55;AN=2;DP=1926;MQ=60;set=variant3-variant5-variant9-variant10-variant22-variant26-variant31-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,165:166:99:5174,486,0:1,0,77,88
chr1	234745009	.	A	G	2957.74	PASS	AC=2;AF=0.816;AN=2;DP=4130;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2961,281,0:0,0,51,43
chr1	234953834	.	A	C	515.54	PASS	AC=2;AF=0.882;AN=2;DP=664;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant20-variant23-variant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:390,36,0:0,0,3,9
chr1	234953875	.	C	CA	136.53	PASS	AC=2;AF=0.98;AN=2;DP=158;MQRankSum=-2.653;ReadPosRankSum=-0.094;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant20-variant23-filterInvariant24-variant26-variant28-variant30-variant31-variant33-variant35-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:171,15,0:0,0,1,4
chr1	235273179	.	G	A	20791.4	PASS	AC=1;AF=0.738;AN=2;DP=16126;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:193,233:426:99:6259,0,4913:102,91,120,113
chr1	235301496	.	CA	C	305.3	PASS	AC=1;AF=0.532;AN=2;DP=1802;set=variant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-filterInvariant17-variant18-filterInvariant19-variant20-variant24-variant25-variant26-variant27-variant30-variant31-filterInvariant33-variant37-filterInvariant38-variant39-variant40-filterInvariant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:39,10:49:99:117,0,832:13,26,5,5
chr1	235316185	.	CTT	CT,C,CTTT	115.2	PASS	AC=1,0,0;AF=0.625,0.042,0.083;AN=2;DP=113;MQ=60;set=variant5-variant9-variant10-variant12-variant15-variant16-variant24-variant28-variant31-variant32-variant41-variant44	GT:DP:GQ:SB	0/1:7:13:1,1,0,5
chr1	235331563	.	G	C	563.12	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.458;QD=8.28;ReadPosRankSum=0.044;SOR=0.747;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,26:68:99:591,0,1135:22,20,14,12
chr1	235357403	.	G	A	631.43	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.419;QD=8.42;ReadPosRankSum=-0.321;SOR=0.596;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,29:75:99:660,0,1203:25,21,15,14
chr1	235359459	.	T	G	479.56	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.302;QD=17.13;ReadPosRankSum=1.973;SOR=0.733;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,16:28:99:508,0,323:3,9,4,12
chr1	235492591	.	G	C	414.36	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=0.977;MQ=60;MQRankSum=0.135;QD=9.42;ReadPosRankSum=-1.259;SOR=0.636;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:443,0,663:11,13,9,10
chr1	235506539	.	T	C	1821.53	PASS	AC=1;AF=0.5;AN=2;DP=143;FS=2.197;FractionInformativeReads=1;MQ=60;MQRankSum=0.378;QD=12.74;ReadPosRankSum=2.848;SOR=0.503;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,72:143:99:1850,0,1676:24,47,28,44
chr1	235543262	.	CA	CAA,C	140.31	PASS	AC=1,0;AF=0.397,0.103;AN=2;DP=937;set=variant2-filterInvariant4-filterInvariant5-variant6-variant7-variant8-filterInvariant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:25:99:12,3,7,3
chr1	235543470	.	C	T	1069.21	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=0;FractionInformativeReads=0.986;MQ=60;MQRankSum=-0.616;QD=15.5;ReadPosRankSum=-0.616;SOR=0.608;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,37:68:99:1097,0,848:11,20,14,23
chr1	235543476	.	TTGTGTGTGTGTGTGTGTGTGTG	T,TTGTGTGTG,TTGTGTG,TTGTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTG,TTGTG,TTGTGTGTGTG,TTGTGTGTGTGTG,TTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTG	1103.38	PASS	AC=0,1,0,0,0,0,0,0,0,1;AF=0.102,0.398,0.08,0.045,0.057,0.068,0.045,0.011,0.034,0.034;AN=2;DP=3568;set=Intersection	GT:DP:GQ:SB	2/10:52:99:0,2,16,34
chr1	235564924	.	G	T	627.1	PASS	AC=1;AF=0.5;AN=2;DP=816;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant16-variant18-variant19-variant21-variant22-variant25-variant29-variant33-variant34-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:613,0,704:10,15,10,13
chr1	235594182	.	A	G	420.32	PASS	AC=2;AF=0.756;AN=2;DP=1539;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1016,102,0:0,0,14,20
chr1	235594250	.	A	G	287.37	PASS	AC=1;AF=0.706;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:111,0,198:0,5,0,3
chr1	235597252	.	T	G	1843.58	PASS	AC=2;AF=0.716;AN=2;DP=2476;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2513,237,0:0,0,54,25
chr1	235598973	.	C	T	1377.32	PASS	AC=1;AF=0.722;AN=2;DP=1998;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,29:60:99:787,0,795:17,14,17,12
chr1	235600049	.	A	C	438.12	PASS	AC=1;AF=0.5;AN=2;DP=79;FractionInformativeReads=1;MQ=60;set=variant11-variant14-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:168,0,253:1,7,0,5
chr1	235600590	.	G	A	957	PASS	AC=1;AF=0.5;AN=2;DP=283;FractionInformativeReads=1;MQ=60;set=variant11-variant14-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:880,0,647:18,11,23,10
chr1	235600741	.	A	G	1013.47	PASS	AC=1;AF=0.5;AN=2;DP=496;MQ=60;set=variant11-variant14-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,54:107:99:1309,0,1316:23,30,21,33
chr1	235600813	.	A	C	325.98	PASS	AC=1;AF=0.5;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant11-variant14-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:709,0,517:7,14,5,19
chr1	235601958	.	G	T	394.87	PASS	AC=1;AF=0.744;AN=2;DP=1250;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:363,0,210:5,2,9,4
chr1	235611521	.	A	C	257.85	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;set=variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:156,0,157:4,0,4,0
chr1	235612320	.	C	T	3211.2	PASS	AC=2;AF=0.756;AN=2;DP=10128;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,200:200:99:6818,600,0:0,0,54,146
chr1	235613727	.	A	G	446.36	PASS	AC=1;AF=0.5;AN=2;DP=94;FractionInformativeReads=1;MQ=60;set=variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:636,0,478:4,13,7,15
chr1	235628908	.	G	A	732.17	PASS	AC=2;AF=0.629;AN=2;DP=1646;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1372,117,0:0,0,24,15
chr1	235647631	.	G	T	287.58	PASS	AC=2;AF=0.613;AN=2;DP=1249;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1635,140,0:0,0,37,10
chr1	235652513	.	T	C	1237.79	PASS	AC=2;AF=0.629;AN=2;DP=2977;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2753,267,0:0,0,59,30
chr1	235659478	.	G	A	93.19	PASS	AC=1;AF=0.5;AN=2;DP=65;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant8-variant9-variant11-variant17-variant25-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:75:107,0,75:2,2,3,1
chr1	235659621	.	GA	G,GAA	42.76	PASS	AC=0,1;AF=0.143,0.357;AN=2;DP=418;MQ=60;set=filterInvariant3-variant4-variant8-variant9-filterInvariant10-variant11-filterInvariant12-variant25-filterInvariant26-filterInvariant27-variant29-variant34-variant35-variant41	GT:DP:GQ:SB	0/2:22:99:6,5,5,6
chr1	235667398	.	AC	A	628.63	PASS	AC=1;AF=0.5;AN=2;DP=300;MQ=60;set=variant7-variant8-variant9-variant11-variant17-variant25-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:393,0,208:8,1,15,0
chr1	235667690	.	A	G	716.37	PASS	AC=2;AF=0.617;AN=2;DP=2230;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2853,242,0:0,0,25,56
chr1	235714162	.	G	A	375.1	PASS	AC=1;AF=0.559;AN=2;DP=578;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant17-variant24-variant29-variant32-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:462,0,306:8,3,10,8
chr1	235714440	.	A	G	1654.98	PASS	AC=1;AF=0.5;AN=2;DP=537;FractionInformativeReads=1;MQ=60;set=variant8-variant29-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,60:126:99:1538,0,1647:33,33,34,26
chr1	235714569	.	T	C	2069.57	PASS	AC=2;AF=0.658;AN=2;DP=1130;set=variant-variant3-variant5-variant7-variant8-variant10-variant11-variant14-variant16-variant17-variant18-variant20-variant24-variant29-variant32-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,47:48:99:1947,99,0:0,1,12,35
chr1	235714571	.	T	C	2069.57	PASS	AC=2;AF=0.632;AN=2;DP=1085;set=variant-variant3-variant5-variant7-variant8-variant10-variant11-variant14-variant16-variant17-variant18-variant20-variant24-variant29-variant32-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:2151,144,0:0,0,12,35
chr1	235714859	.	CAAA	C	432.09	PASS	AC=2;AF=0.6;AN=2;DP=463;MQ=60;set=variant-variant3-variant7-variant8-variant10-variant11-variant14-variant16-variant18-variant24-variant32-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1317,93,0:0,0,25,6
chr1	235715029	.	G	A	1040.69	PASS	AC=1;AF=0.5;AN=2;DP=1459;MQ=60;set=variant2-variant3-variant7-variant10-variant11-variant14-variant16-variant18-variant24-variant32-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,49:97:99:1197,0,1185:19,29,21,28
chr1	235715064	.	A	T	2292.06	PASS	AC=2;AF=0.813;AN=2;DP=3527;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,73:74:99:1900,200,0:1,0,34,39
chr1	235715523	.	A	G	826.35	PASS	AC=1;AF=0.653;AN=2;DP=5307;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,59:125:99:1542,0,1637:24,42,19,40
chr1	235715556	.	C	G	687.25	PASS	AC=1;AF=0.657;AN=2;DP=3317;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,33:76:99:904,0,1227:11,32,8,25
chr1	235715601	.	A	G	324.22	PASS	AC=1;AF=0.657;AN=2;DP=1471;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:670,0,691:0,18,2,17
chr1	235758911	.	A	G	193.54	PASS	AC=2;AF=0.744;AN=2;DP=566;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:562,51,0:0,0,5,12
chr1	235826382	.	TA	T	990.04	PASS	AC=2;AF=0.689;AN=2;DP=1355;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1008,117,0:0,0,10,29
chr1	235827443	.	T	C	410.1	PASS	AC=1;AF=0.682;AN=2;DP=362;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:70:186,0,70:0,2,0,5
chr1	235827641	.	C	T	500.3	PASS	AC=2;AF=0.694;AN=2;DP=464;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:506,36,0:0,0,12,0
chr1	235827945	.	G	A	1369.46	PASS	AC=1;AF=0.5;AN=2;DP=282;FractionInformativeReads=1;MQ=60;set=variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,46:89:99:1167,0,1133:13,30,14,32
chr1	235840332	.	G	A	1089.04	PASS	AC=1;AF=0.5;AN=2;DP=377;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:83,63:146:99:1360,0,2089:47,36,36,27
chr1	235840689	.	C	A	60.11	PASS	AC=1;AF=0.5;AN=2;DP=52;FractionInformativeReads=1;MQ=60;set=variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:327,0,426:10,2,10,1
chr1	235856901	.	G	A	1034.98	PASS	AC=1;AF=0.686;AN=2;DP=1582;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:572,0,496:4,14,3,16
chr1	235860340	.	C	T	2859.75	PASS	AC=2;AF=0.708;AN=2;DP=3291;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2073,210,0:0,0,34,36
chr1	235887276	.	G	T	461.76	PASS	AC=2;AF=0.667;AN=2;DP=839;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:904,69,0:0,0,20,3
chr1	235896726	.	C	T	507.04	PASS	AC=2;AF=0.656;AN=2;DP=723;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:779,69,0:0,0,14,9
chr1	235910392	.	A	G	753.76	PASS	AC=2;AF=0.656;AN=2;DP=2340;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2443,224,0:0,0,45,30
chr1	235910542	.	C	T	1411.91	PASS	AC=2;AF=0.656;AN=2;DP=4230;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3711,369,0:0,0,56,67
chr1	235918688	.	CAAAAGAAAAG	CAAAAG,CAAAAGAAAAGAAAAG,CAAAAGAAAAGAAAAGAAAAG,C	627.4	PASS	AC=1,0,0,0;AF=0.442,0.337,0.023,0.012;AN=2;DP=710;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:9:99:3,1,4,1
chr1	235922228	.	T	C	527.48	PASS	AC=1;AF=0.543;AN=2;DP=767;MQ=60;set=variant6-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant26-variant28-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:538,0,496:14,3,14,7
chr1	235940450	.	C	T	1473.36	PASS	AC=2;AF=0.656;AN=2;DP=4255;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4323,429,0:0,0,84,59
chr1	235945186	.	G	A	777.04	PASS	AC=1;AF=0.531;AN=2;DP=986;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant8-variant10-variant12-variant13-variant18-variant21-variant24-variant25-variant33-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,29:66:99:823,0,1082:29,8,22,7
chr1	235945294	.	T	C	1884.63	PASS	AC=2;AF=0.656;AN=2;DP=4946;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:4479,450,0:0,0,75,75
chr1	235955150	.	G	A	1619.26	PASS	AC=1;AF=0.536;AN=2;DP=1820;MQ=60;set=variant4-variant5-variant8-variant10-variant12-variant13-variant18-variant21-variant24-variant25-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,81:141:99:2174,0,1455:28,32,48,33
chr1	235963454	.	C	A	48.65	PASS	AC=1;AF=0.65;AN=2;DP=61;MQ=60;set=variant-variant4-variant8-variant12-variant13-variant18-variant21-variant24-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:71:123,0,71:2,0,3,2
chr1	235971763	.	A	G	345.64	PASS	AC=1;AF=0.531;AN=2;DP=657;MQ=60;set=variant-variant4-variant5-variant8-variant10-variant12-variant13-variant18-variant21-variant24-variant25-variant33-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:504,0,424:9,9,12,2
chr1	235972435	.	T	C	1810.27	PASS	AC=2;AF=0.656;AN=2;DP=4047;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4064,400,0:0,0,70,64
chr1	235972867	.	T	C	1050.33	PASS	AC=2;AF=0.656;AN=2;DP=3014;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3389,342,0:0,0,54,60
chr1	235993565	.	T	G	1516.22	PASS	AC=1;AF=0.5;AN=2;DP=213;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,61:103:99:1662,0,1005:25,17,40,21
chr1	236030045	.	A	T	62.99	PASS	AC=2;AF=0.69;AN=2;DP=302;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant11-variant12-variant13-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:335,39,0:0,0,7,6
chr1	236030277	.	C	G	233.68	PASS	AC=1;AF=0.538;AN=2;DP=198;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant10-variant13-variant18-variant21-variant24-variant25-variant27-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:297,0,229:3,6,3,7
chr1	236139141	.	A	T	1110.25	PASS	AC=2;AF=0.556;AN=2;DP=1377;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant19-variant23-variant25-variant28-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2422,266,0:0,0,50,39
chr1	236139817	.	C	T	6180.51	PASS	AC=2;AF=0.556;AN=2;DP=6337;MQ=60;set=variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant19-variant23-variant25-variant28-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,300:303:99:9395,811,0:1,2,152,148
chr1	236139894	.	T	G	5152.14	PASS	AC=2;AF=0.556;AN=2;DP=5703;MQ=60;set=variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant19-variant23-variant25-variant28-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,269:270:99:8738,766,0:0,1,131,138
chr1	236140266	.	A	C	1847.22	PASS	AC=2;AF=0.553;AN=2;DP=2543;set=variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant19-variant23-variant25-variant28-variant30-variant34-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:4173,369,0:0,0,69,54
chr1	236140427	.	T	C	3482.05	PASS	AC=1;AF=0.5;AN=2;DP=324;FS=0.842;FractionInformativeReads=1;MQ=60;MQRankSum=4.079;QD=10.75;ReadPosRankSum=0.396;SOR=0.652;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:173,151:324:99:3510,0,4157:89,84,75,76
chr1	236140739	.	G	A	1622.86	PASS	AC=2;AF=0.556;AN=2;DP=1645;MQ=60;set=variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant19-variant23-variant25-variant28-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3174,263,0:0,0,38,50
chr1	236141174	.	T	C	1647.19	PASS	AC=2;AF=0.556;AN=2;DP=1861;MQ=60;set=variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant19-variant23-variant25-variant28-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,116:117:99:3738,305,0:1,0,70,46
chr1	236142253	.	T	G	1207.21	PASS	AC=2;AF=0.556;AN=2;DP=1234;MQ=60;set=variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant19-variant23-variant25-variant28-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2784,264,0:0,0,57,31
chr1	236142565	.	T	C	351.5	PASS	AC=2;AF=0.845;AN=2;DP=1382;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1507,105,0:0,0,3,32
chr1	236142570	.	C	G	479.96	PASS	AC=2;AF=0.556;AN=2;DP=493;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant19-variant23-variant25-variant28-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:99:1448,99,0:0,0,2,29
chr1	236143302	.	C	CA	1553.64	PASS	AC=2;AF=0.556;AN=2;DP=2030;MQ=60;set=variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant19-variant23-variant25-variant28-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3268,342,0:0,0,54,60
chr1	236144754	.	C	A	189.51	PASS	AC=2;AF=0.577;AN=2;DP=145;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant11-variant12-variant19-variant25-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:665,48,0:0,0,13,3
chr1	236144951	.	A	G	1850.28	PASS	AC=2;AF=0.559;AN=2;DP=1745;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant9-variant10-variant11-variant12-variant19-variant23-variant25-variant28-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3737,342,0:0,0,57,57
chr1	236145145	.	T	C	823.58	PASS	AC=2;AF=0.559;AN=2;DP=916;MQ=60;set=variant3-variant7-variant9-variant10-variant11-variant12-variant19-variant23-variant25-variant28-variant30-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1840,177,0:0,0,19,40
chr1	236154057	.	AGGACTACAT	A	476.13	PASS	AC=2;AF=0.583;AN=2;DP=602;MQ=60;set=variant7-variant10-variant11-variant12-variant23-variant25-variant28-variant34-variant36-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2471,166,0:0,0,43,12
chr1	236154365	.	G	T	331.73	PASS	AC=2;AF=0.563;AN=2;DP=456;MQ=60;set=variant3-variant7-variant9-variant10-variant11-variant12-variant19-variant23-variant25-variant28-variant30-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1383,122,0:0,0,9,32
chr1	236157087	.	C	A	4516.73	PASS	AC=1;AF=0.5;AN=2;DP=366;FS=2.756;FractionInformativeReads=1;MQ=60;MQRankSum=1.33;QD=12.34;ReadPosRankSum=-0.574;SOR=0.807;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:176,190:366:99:4545,0,4241:89,87,89,101
chr1	236157277	.	T	G	1007.54	PASS	AC=2;AF=0.583;AN=2;DP=1319;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant9-variant10-variant11-variant12-variant19-variant27-variant28-variant30-variant32-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2403,207,0:0,0,15,54
chr1	236201471	.	G	A	1191.54	PASS	AC=1;AF=0.5;AN=2;DP=121;FS=1.447;FractionInformativeReads=1;MQ=60;MQRankSum=-1.563;QD=9.85;ReadPosRankSum=-1.034;SOR=0.562;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:69,52:121:99:1220,0,1632:32,37,26,26
chr1	236305689	.	CGGGGCGCGCGGGCCGGGGCGGGGGCGCGCGGGCCGGGGCG	C,CGGGGCGCGCGGGCCGGGGCG	308.56	PASS	AC=1,0;AF=0.76,0.04;AN=2;DP=254;set=variant2-variant3-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant40-variant41	GT:DP:GQ:SB	0/1:9:99:2,1,5,1
chr1	236306060	.	C	T	2760.42	PASS	AC=1;AF=0.5;AN=2;DP=246;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.374;QD=11.22;ReadPosRankSum=2.899;SOR=0.664;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:126,120:246:99:2789,0,3024:61,65,59,61
chr1	236332169	.	G	A	443.44	PASS	AC=1;AF=0.5;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:582,0,569:9,13,5,15
chr1	236343511	.	T	C	474.88	PASS	AC=1;AF=0.5;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,22:55:99:576,0,900:13,20,12,10
chr1	236343535	.	A	G	489.72	PASS	AC=1;AF=0.5;AN=2;DP=90;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,22:51:99:538,0,876:10,19,12,10
chr1	236343675	.	C	CTG	184.27	PASS	AC=1;AF=0.667;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:274,0,186:1,4,1,6
chr1	236347224	.	C	T	679.78	PASS	AC=1;AF=0.5;AN=2;DP=121;FractionInformativeReads=1;MQ=60;set=variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,21:34:99:708,0,391:2,11,3,18
chr1	236368708	.	T	C	76.67	PASS	AC=2;AF=0.7;AN=2;DP=265;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant9-variant12-variant14-variant15-variant17-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:405,27,0:0,0,0,9
chr1	236371260	.	C	T	356.8	PASS	AC=2;AF=0.563;AN=2;DP=198;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant25-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:994,69,0:0,0,21,2
chr1	236371755	.	G	GT	793.27	PASS	AC=2;AF=0.65;AN=2;DP=703;MQ=60;set=variant4-variant12-variant14-variant15-variant25-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:1965,207,0:0,0,29,40
chr1	236371831	.	T	C	766.33	PASS	AC=2;AF=0.65;AN=2;DP=554;MQ=60;set=variant4-variant12-variant14-variant15-variant25-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2033,200,0:0,0,29,38
chr1	236378916	.	T	C	4605.75	PASS	AC=2;AF=0.65;AN=2;DP=2919;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant14-variant15-variant25-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,299:299:99:9303,897,0:0,0,167,132
chr1	236379265	.	CAAAAT	C	6112.93	PASS	AC=2;AF=0.65;AN=2;DP=2307;MQ=60;set=variant4-variant12-variant14-variant15-variant25-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,198:198:99:8864,598,0:0,0,92,106
chr1	236380077	.	G	A	2262.17	PASS	AC=1;AF=0.609;AN=2;DP=5888;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,84:196:99:2124,0,3305:49,63,35,49
chr1	236380611	.	C	T	1117.63	PASS	AC=2;AF=0.673;AN=2;DP=2567;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3105,290,0:0,0,35,62
chr1	236380653	.	ACTGTTGGTATGAATCACAGAAAGTCCT	A	447.79	PASS	AC=2;AF=0.673;AN=2;DP=1550;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-filterInvariant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:87:1206,87,0:0,0,7,20
chr1	236380744	.	T	G	293.11	PASS	AC=2;AF=0.673;AN=2;DP=841;MQ=60;set=variant-filterInvariant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1122,99,0:0,0,12,21
chr1	236380913	.	T	C	199.29	PASS	AC=2;AF=0.674;AN=2;DP=408;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant15-variant16-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:608,60,0:0,0,9,11
chr1	236381349	.	C	G	1425.82	PASS	AC=2;AF=0.673;AN=2;DP=3063;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,101:103:99:3261,259,0:1,1,33,68
chr1	236381825	.	G	C	586.05	PASS	AC=2;AF=0.673;AN=2;DP=1153;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1724,174,0:0,0,27,31
chr1	236381897	.	T	A	360.54	PASS	AC=2;AF=0.673;AN=2;DP=571;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1012,84,0:0,0,6,22
chr1	236381917	.	T	A	364.57	PASS	AC=2;AF=0.673;AN=2;DP=414;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:761,54,0:0,0,2,16
chr1	236381987	.	A	G	49.73	PASS	AC=2;AF=0.688;AN=2;DP=80;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant9-variant15-variant16-variant23-variant24-variant25-variant26-variant28-variant30-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,0,4
chr1	236381989	.	C	A	49.73	PASS	AC=2;AF=0.688;AN=2;DP=76;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant9-variant15-variant16-variant23-variant24-variant25-variant26-variant28-variant30-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,0,4
chr1	236383425	.	C	A	1153.62	PASS	AC=2;AF=0.673;AN=2;DP=1782;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2140,177,0:0,0,47,12
chr1	236383623	.	A	G	3775.47	PASS	AC=2;AF=0.673;AN=2;DP=7955;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,259:260:99:7957,769,0:0,1,106,153
chr1	236383650	.	C	G	3546.08	PASS	AC=2;AF=0.673;AN=2;DP=6524;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,225:225:99:7224,674,0:0,0,82,143
chr1	236383889	.	T	A	3240.57	PASS	AC=2;AF=0.673;AN=2;DP=6749;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,183:184:99:5543,505,0:0,1,101,82
chr1	236383910	.	G	A	3290.2	PASS	AC=2;AF=0.673;AN=2;DP=7446;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,210:211:99:6335,585,0:0,1,120,90
chr1	236384022	.	A	ATTT	4007.26	PASS	AC=2;AF=0.673;AN=2;DP=7063;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,208:208:99:8853,628,0:0,0,100,108
chr1	236384278	.	G	C	357.23	PASS	AC=2;AF=0.673;AN=2;DP=740;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1335,117,0:0,0,10,29
chr1	236385116	.	C	T	300.83	PASS	AC=2;AF=0.673;AN=2;DP=457;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:264,21,0:0,0,6,1
chr1	236385165	.	G	C	530.34	PASS	AC=2;AF=0.673;AN=2;DP=1169;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1196,111,0:0,0,26,11
chr1	236385360	.	C	T	1042.35	PASS	AC=2;AF=0.673;AN=2;DP=1990;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2259,207,0:0,0,21,48
chr1	236385379	.	A	G	637.02	PASS	AC=2;AF=0.673;AN=2;DP=1466;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1934,168,0:0,0,15,41
chr1	236388346	.	G	A	2024.81	PASS	AC=1;AF=0.5;AN=2;DP=1339;MQ=60;set=variant10-variant15-variant18-variant25-variant32-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,85:178:99:1898,0,2340:48,45,46,39
chr1	236393654	.	A	G	877.81	PASS	AC=2;AF=0.989;AN=2;DP=1059;FS=0;MQRankSum=0.474;ReadPosRankSum=1.107;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:567,54,0:0,0,6,12
chr1	236415132	.	C	G	308.94	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=2.262;FractionInformativeReads=1;MQ=60;MQRankSum=-1.352;QD=14.04;ReadPosRankSum=-0.495;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:337,0,339:9,1,9,3
chr1	236416923	.	C	T	298.37	PASS	AC=1;AF=0.5;AN=2;DP=213;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant15-variant18-variant25-variant32-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:236,0,529:2,13,1,7
chr1	236433135	.	AT	A	1620.78	PASS	AC=1;AF=0.886;AN=2;DP=1930;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:497,0,684:12,9,8,7
chr1	236445212	.	A	G	1435.47	PASS	AC=2;AF=0.989;AN=2;DP=2772;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1809,185,0:0,0,23,39
chr1	236557771	.	G	A	1444.61	PASS	AC=2;AF=0.791;AN=2;DP=5645;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4106,422,0:0,0,68,73
chr1	236557928	.	G	A	121.25	PASS	AC=2;AF=0.798;AN=2;DP=719;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:458,36,0:0,0,1,11
chr1	236572368	.	TAA	TA,T,TAAA	152.72	PASS	AC=0,0,1;AF=0.421,0.079,0.026;AN=2;DP=265;MQ=60;set=variant3-variant4-variant7-variant11-variant13-variant14-variant16-variant19-variant21-variant23-variant24-variant25-variant28-variant30-variant35-variant37-variant41-variant42-variant43	GT:DP:GQ:SB	0/3:15:76:8,1,5,1
chr1	236572389	.	G	A	869.5	PASS	AC=2;AF=0.675;AN=2;DP=1080;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1173,90,0:0,0,26,4
chr1	236572475	.	A	G	2728.98	PASS	AC=1;AF=0.628;AN=2;DP=3579;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,49:95:99:1105,0,1057:26,20,26,23
chr1	236577761	.	T	C	341.83	PASS	AC=1;AF=0.696;AN=2;DP=214;MQ=60;set=variant-variant4-variant7-variant8-variant9-variant14-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant32-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:72:103,0,72:0,3,0,4
chr1	236577762	.	C	T,CT	234.78	PASS	AC=1,0;AF=0.474,0.41;AN=2;DP=324;FS=0;MQ=60;set=variant7-variant9-variant4-variant3-variant14-variant15-variant-variant5-variant16-variant8-variant6-variant17-variant18-variant2-variant19-variant13-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:5:16:0,1,0,4
chr1	236590497	.	C	G	612.09	PASS	AC=1;AF=0.622;AN=2;DP=727;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:99:111,0,484:12,4,4,2
chr1	236590563	.	C	T	1395.41	PASS	AC=1;AF=0.618;AN=2;DP=1719;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,15:42:99:266,0,672:18,9,8,7
chr1	236590629	.	C	T	1827.88	PASS	AC=1;AF=0.618;AN=2;DP=2418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,21:55:99:452,0,911:17,17,11,10
chr1	236590659	.	G	C	2188.64	PASS	AC=1;AF=0.632;AN=2;DP=2425;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:423,0,777:12,16,10,10
chr1	236590816	.	T	G	783.1	PASS	AC=1;AF=0.618;AN=2;DP=959;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:318,0,179:2,5,4,8
chr1	236645670	.	C	T	3607.62	PASS	AC=1;AF=0.605;AN=2;DP=2904;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant20-variant23-variant24-variant25-variant29-variant30-variant31-variant33-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,72:158:99:1579,0,2164:50,36,40,32
chr1	236647511	.	T	C	1024.11	PASS	AC=1;AF=0.667;AN=2;DP=1644;MQ=60;set=variant7-variant12-variant13-variant14-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,26:59:99:660,0,874:19,14,12,14
chr1	236647550	.	C	G,A	1179.77	PASS	AC=1,0;AF=0.452,0.214;AN=2;DP=1855;MQ=60;set=variant7-variant12-variant13-variant14-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant41-variant43	GT:DP:GQ:SB	0/1:68:99:21,20,15,12
chr1	236647736	.	C	T	1133.19	PASS	AC=1;AF=0.567;AN=2;DP=1550;MQ=60;set=variant7-variant12-variant13-variant14-variant18-variant21-variant26-variant28-variant30-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1333,0,1248:30,24,25,25
chr1	236648008	.	GAA	G,GA	130.55	PASS	AC=2,0;AF=0.191,0.382;AN=2;DP=779;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:8:24:0,0,3,5
chr1	236681581	.	G	A	419.53	PASS	AC=1;AF=0.594;AN=2;DP=313;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant7-variant9-variant12-variant13-variant17-variant22-variant25-variant29-variant32-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:93:93,0,316:7,5,3,2
chr1	236681719	.	T	C	596.86	PASS	AC=1;AF=0.522;AN=2;DP=896;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant12-variant16-variant18-variant20-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:322,0,390:9,9,5,9
chr1	236681750	.	G	A	173.45	PASS	AC=2;AF=0.691;AN=2;DP=1268;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:955,99,0:0,0,13,20
chr1	236686575	.	T	C	373.54	PASS	AC=2;AF=1;AN=2;DP=376;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:343,27,0:0,0,8,1
chr1	236686995	.	C	G	1003.67	PASS	AC=1;AF=0.5;AN=2;DP=351;MQ=60;set=variant13-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,47:89:99:1056,0,937:19,23,24,23
chr1	236687145	.	C	T	2112.82	PASS	AC=2;AF=0.764;AN=2;DP=2534;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2149,201,0:0,0,42,26
chr1	236687782	.	A	G	1585.62	PASS	AC=2;AF=0.6;AN=2;DP=807;FractionInformativeReads=1;MQ=60;set=variant12-variant13-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:2,163:165:99:5104,445,0:1,1,74,89
chr1	236687887	.	C	G	1463.27	PASS	AC=1;AF=0.5;AN=2;DP=300;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,56:106:99:1505,0,1404:16,34,26,30
chr1	236702210	.	A	G	836.28	PASS	AC=2;AF=0.806;AN=2;DP=526;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:510,42,0:0,0,9,5
chr1	236703734	.	T	C	336.22	PASS	AC=2;AF=0.823;AN=2;DP=178;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr1	236706278	.	G	T	1319.72	PASS	AC=2;AF=0.583;AN=2;DP=530;MQ=60;set=variant10-variant12-variant13-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,85:87:99:2548,209,0:1,1,31,54
chr1	236706300	.	T	A	1126.07	PASS	AC=2;AF=0.583;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant13-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2261,215,0:0,0,27,45
chr1	236706671	.	T	A	1320.55	PASS	AC=2;AF=0.803;AN=2;DP=1017;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:715,63,0:0,0,17,4
chr1	236706780	.	C	T	4322.3	PASS	AC=2;AF=0.803;AN=2;DP=5279;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:3968,389,0:0,0,77,53
chr1	236706848	.	G	C	1776.99	PASS	AC=1;AF=0.5;AN=2;DP=198;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.438;QD=8.97;ReadPosRankSum=0.329;SOR=0.712;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:120,78:198:99:1805,0,3019:64,56,42,36
chr1	236706862	.	G	C	6504.16	PASS	AC=2;AF=0.803;AN=2;DP=8916;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:6489,645,0:0,0,115,100
chr1	236711618	.	A	C	2198.78	PASS	AC=2;AF=0.583;AN=2;DP=804;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant13-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3964,351,0:0,0,69,48
chr1	236711810	.	A	G	5253.92	PASS	AC=2;AF=0.803;AN=2;DP=5172;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4704,455,0:0,0,59,93
chr1	236713287	.	A	T	1677.33	PASS	AC=2;AF=0.583;AN=2;DP=1069;MQ=60;set=variant10-variant12-variant13-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,203:203:99:6115,606,0:0,0,94,109
chr1	236714292	.	TA	TAA,TAAA,T	731.68	PASS	AC=0,0,1;AF=0.22,0.195,0.171;AN=2;DP=3144;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:39:99:3,18,3,15
chr1	236716686	.	G	A	368.16	PASS	AC=2;AF=0.819;AN=2;DP=678;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:672,57,0:0,0,15,4
chr1	236716888	.	G	A	1781.84	PASS	AC=1;AF=0.5;AN=2;DP=288;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,77:145:99:1967,0,1631:36,32,44,33
chr1	236718060	.	C	T	476.47	PASS	AC=1;AF=0.5;AN=2;DP=166;FractionInformativeReads=1;MQ=60;set=variant13-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,17:40:99:415,0,615:8,15,7,10
chr1	236719135	.	T	C	1537.3	PASS	AC=2;AF=0.81;AN=2;DP=2996;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1597,153,0:0,0,30,21
chr1	236719688	.	A	G	505.21	PASS	AC=2;AF=0.797;AN=2;DP=810;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:916,75,0:0,0,7,18
chr1	236720761	.	T	C	1687.73	PASS	AC=2;AF=0.797;AN=2;DP=2369;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2316,209,0:0,0,27,43
chr1	236721610	.	G	A	1431.72	PASS	AC=2;AF=0.797;AN=2;DP=1997;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1487,147,0:0,0,29,20
chr1	236721660	.	T	C	2301.46	PASS	AC=2;AF=0.803;AN=2;DP=3106;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2233,219,0:0,0,41,32
chr1	236721731	.	T	C	2608.11	PASS	AC=2;AF=1;AN=2;DP=4919;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:2993,299,0:0,0,55,45
chr1	236721983	.	G	C	685.81	PASS	AC=2;AF=0.583;AN=2;DP=269;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant13-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1784,159,0:0,0,17,36
chr1	236722182	.	A	T	1365.98	PASS	AC=2;AF=1;AN=2;DP=1968;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:92:992,92,0:0,0,20,11
chr1	236722489	.	C	T	356.48	PASS	AC=2;AF=0.809;AN=2;DP=390;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:354,30,0:0,0,3,7
chr1	236723108	.	C	T	580.43	PASS	AC=2;AF=0.583;AN=2;DP=316;MQ=60;set=variant10-variant12-variant13-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2120,226,0:0,0,40,36
chr1	236724504	.	G	A	2212.22	PASS	AC=2;AF=0.797;AN=2;DP=2014;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1410,135,0:0,0,29,16
chr1	236724605	.	G	T	3264.04	PASS	AC=2;AF=0.797;AN=2;DP=3449;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2482,252,0:0,0,40,44
chr1	236724715	.	T	G	1651.86	PASS	AC=2;AF=0.797;AN=2;DP=1415;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1141,90,0:0,0,7,23
chr1	236724722	.	C	T	530.57	PASS	AC=1;AF=0.5;AN=2;DP=90;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:239,0,547:4,15,3,7
chr1	236724766	.	C	T	424.21	PASS	AC=2;AF=0.833;AN=2;DP=443;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:491,39,0:0,0,2,11
chr1	236729834	.	G	A	770.5	PASS	AC=2;AF=0.583;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant13-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1399,131,0:0,0,29,15
chr1	236729965	.	G	A	1078.53	PASS	AC=1;AF=0.5;AN=2;DP=297;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,52:106:99:1203,0,1380:27,27,28,24
chr1	236732145	.	C	G	50.12	PASS	AC=2;AF=0.893;AN=2;DP=58;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant10-variant17-variant19-variant22-variant28-variant29-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:177,12,0:0,0,3,1
chr1	236732190	.	AAAAAAAAC	A	234.17	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;MQ=60;set=variant10-variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:22:124,0,22:1,1,6,1
chr1	236735064	.	AGAACTCATTCAATAAG	A	519.2	PASS	AC=1;AF=0.5;AN=2;DP=120;MQ=60;set=variant10-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:270,0,333:2,7,0,7
chr1	236735676	.	C	T	1342.18	PASS	AC=1;AF=0.5;AN=2;DP=235;FS=0;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,69:129:99:1682,0,1320:36,24,42,27
chr1	236737396	.	T	C	248.32	PASS	AC=1;AF=0.5;AN=2;DP=92;MQ=60;set=variant10-variant12-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:99:369,0,160:5,1,9,6
chr1	236737657	.	A	G	425.36	PASS	AC=1;AF=0.5;AN=2;DP=120;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,11:33:99:302,0,719:6,16,1,10
chr1	236737933	.	G	C	789.19	PASS	AC=1;AF=0.5;AN=2;DP=174;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,47:100:99:1136,0,1193:31,22,25,22
chr1	236738237	.	T	C	863.53	PASS	AC=1;AF=0.5;AN=2;DP=176;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,11:35:99:211,0,681:7,17,4,7
chr1	236739416	.	C	T	1808.39	PASS	AC=1;AF=0.77;AN=2;DP=1926;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:630,0,727:17,8,16,7
chr1	236740030	.	C	G	193.47	PASS	AC=1;AF=0.5;AN=2;DP=56;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:431,0,774:13,6,11,4
chr1	236740039	.	G	C	1241.2	PASS	AC=1;AF=0.77;AN=2;DP=1275;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:597,0,696:13,8,16,7
chr1	236744720	.	TA	TAA,T	675.88	PASS	AC=0,1;AF=0.132,0.395;AN=2;DP=356;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant13-variant15-variant16-variant19-variant25-variant26-variant32-variant36-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:9:26:0,2,2,5
chr1	236748397	.	A	G	1222.47	PASS	AC=1;AF=0.5;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,62:101:99:1470,0,971:27,12,39,23
chr1	236748570	.	T	C	1215.4	PASS	AC=1;AF=0.5;AN=2;DP=1008;MQ=60;set=variant3-variant6-variant7-variant13-variant16-variant23-variant24-variant25-variant26-variant32-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,48:92:99:1333,0,1211:16,28,14,34
chr1	236749373	.	A	AATTTGTCT	247.09	PASS	AC=1;AF=0.5;AN=2;DP=27;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:239,0,372:2,2,1,5
chr1	236749451	.	TA	T	178.29	PASS	AC=2;AF=0.838;AN=2;DP=250;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:523,42,0:0,0,10,4
chr1	236750709	.	C	T	694.42	PASS	AC=1;AF=0.5;AN=2;DP=195;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,32:75:99:728,0,1091:26,17,20,12
chr1	236750799	.	A	C	1068.54	PASS	AC=1;AF=0.5;AN=2;DP=291;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,49:108:99:1104,0,1399:27,32,25,24
chr1	236751195	.	G	A	581.53	PASS	AC=1;AF=0.5;AN=2;DP=137;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:608,0,522:14,2,16,6
chr1	236755142	.	C	T	300.52	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=6.862;FractionInformativeReads=1;MQ=60;MQRankSum=-1.506;QD=12.52;ReadPosRankSum=-1.854;SOR=0.401;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:329,0,365:10,3,5,6
chr1	236755170	.	G	T	1319.14	PASS	AC=1;AF=0.77;AN=2;DP=1130;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:441,0,417:7,6,11,5
chr1	236755427	.	A	G	1953.57	PASS	AC=1;AF=0.77;AN=2;DP=1274;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:505,0,434:3,12,6,12
chr1	236755690	.	G	A	156.22	PASS	AC=1;AF=0.788;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:105,0,119:3,0,2,1
chr1	236755814	.	G	A	1603.89	PASS	AC=1;AF=0.77;AN=2;DP=1567;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:675,0,1046:10,10,10,8
chr1	236755837	.	C	T	1648.89	PASS	AC=1;AF=0.77;AN=2;DP=1665;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:697,0,1043:10,10,9,10
chr1	236755937	.	TA	T	442.52	PASS	AC=1;AF=0.757;AN=2;DP=878;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:77:77,0,184:3,5,1,3
chr1	236757200	.	A	G	847.02	PASS	AC=1;AF=0.77;AN=2;DP=951;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:550,0,488:13,0,14,3
chr1	236757229	.	G	A	1245.84	PASS	AC=1;AF=0.77;AN=2;DP=1632;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:760,0,735:20,9,21,12
chr1	236757468	.	C	T	626.08	PASS	AC=1;AF=0.5;AN=2;DP=93;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:435,0,296:2,9,5,10
chr1	236758887	.	T	C	3057.73	PASS	AC=1;AF=0.77;AN=2;DP=3819;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,50:95:99:1146,0,991:21,24,27,23
chr1	236761089	.	T	C	356.38	PASS	AC=1;AF=0.5;AN=2;DP=34;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:249,0,376:8,1,7,1
chr1	236761110	.	T	C	395.74	PASS	AC=1;AF=0.5;AN=2;DP=95;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:364,0,480:11,2,10,3
chr1	236766745	.	C	G	152.04	PASS	AC=1;AF=0.5;AN=2;DP=54;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:322,0,504:0,13,2,9
chr1	236767072	.	A	G	177.07	PASS	AC=1;AF=0.821;AN=2;DP=190;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:228,0,271:7,1,6,0
chr1	236767178	.	AG	A	1702.63	PASS	AC=1;AF=0.689;AN=2;DP=1687;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:575,0,631:17,12,18,11
chr1	236767182	.	G	A	2746.86	PASS	AC=1;AF=0.563;AN=2;DP=450;MQ=60;set=variant2-variant5-variant13-variant15-variant17-variant22-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:595,0,573:18,11,19,13
chr1	236767288	.	C	T	1301.08	PASS	AC=1;AF=0.5;AN=2;DP=354;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,66:135:99:1456,0,1746:36,33,33,33
chr1	236767330	.	A	G	3615.1	PASS	AC=1;AF=0.743;AN=2;DP=4681;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,56:121:99:1302,0,1590:35,30,26,30
chr1	236849952	.	C	T	1779.26	PASS	AC=1;AF=0.5;AN=2;DP=772;MQ=60;set=variant2-variant15-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,74:147:99:1813,0,1635:41,32,45,29
chr1	236881403	.	C	T	406.52	PASS	AC=1;AF=0.73;AN=2;DP=306;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:95:198,0,95:0,3,0,5
chr1	236882110	.	G	A	2734.81	PASS	AC=2;AF=1;AN=2;DP=3536;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1935,161,0:0,0,40,14
chr1	236882303	.	T	C	1280.54	PASS	AC=2;AF=1;AN=2;DP=3036;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2471,213,0:0,0,21,50
chr1	236883161	.	A	G	923.66	PASS	AC=2;AF=1;AN=2;DP=967;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:788,60,0:0,0,18,2
chr1	236883240	.	T	C	2765.35	PASS	AC=2;AF=1;AN=2;DP=3989;FS=0;MQ=60;MQRankSum=1.55;ReadPosRankSum=-0.547;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2809,273,0:0,0,59,32
chr1	236883421	.	C	T	3599.44	PASS	AC=2;AF=1;AN=2;DP=4963;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3083,292,0:0,0,37,61
chr1	236883564	.	G	A	1256.36	PASS	AC=2;AF=1;AN=2;DP=1437;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:786,72,0:0,0,9,15
chr1	236890781	.	A	G	632.31	PASS	AC=2;AF=1;AN=2;DP=1102;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:901,72,0:0,0,18,6
chr1	236897633	.	A	G	1822.56	PASS	AC=2;AF=1;AN=2;DP=2362;FS=0;MQ=60;MQRankSum=0.426;ReadPosRankSum=1.505;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1609,144,0:0,0,35,13
chr1	236899899	.	TC	T	2870.98	PASS	AC=2;AF=0.797;AN=2;DP=3720;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3399,313,0:0,0,44,60
chr1	236900018	.	G	A	702.27	PASS	AC=1;AF=0.706;AN=2;DP=764;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:334,0,270:1,8,2,9
chr1	236900597	.	G	GTATATATATA	355.74	PASS	AC=2;AF=1;AN=2;DP=29;FS=0;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:41:532,41,0:0,0,1,13
chr1	236900598	.	C	T	139.61	PASS	AC=2;AF=0.845;AN=2;DP=345;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:42:532,42,0:0,0,0,3
chr1	236902532	.	ATT	A	550.5	PASS	AC=1;AF=0.5;AN=2;DP=232;MQ=60;set=variant8-variant12-variant17-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:508,0,527:15,2,14,2
chr1	236902560	.	C	T,G	2293.48	PASS	AC=1,1;AF=0.694,0.069;AN=2;DP=2690;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:45:99:0,0,29,16
chr1	236902594	.	C	G	4104.2	PASS	AC=2;AF=0.842;AN=2;DP=4427;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2847,271,0:0,0,52,39
chr1	236902865	.	A	C	3858.13	PASS	AC=2;AF=0.764;AN=2;DP=5590;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4027,384,0:0,0,62,66
chr1	236902955	.	T	C	3131.02	PASS	AC=2;AF=0.764;AN=2;DP=4291;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3366,327,0:0,0,47,62
chr1	236907847	.	G	A	522.68	PASS	AC=1;AF=0.5;AN=2;DP=487;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant17-variant25-variant30-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,32:57:99:802,0,698:17,8,20,12
chr1	236912286	.	G	A	502.07	PASS	AC=2;AF=0.942;AN=2;DP=486;FS=0;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:395,30,0:0,0,8,2
chr1	236912597	.	A	G	278.19	PASS	AC=1;AF=0.5;AN=2;DP=264;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant25-variant30-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:622,0,534:3,14,5,14
chr1	236914610	.	G	C	186.1	PASS	AC=1;AF=0.798;AN=2;DP=954;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:371,0,557:14,3,11,3
chr1	236917155	.	A	C	59.48	PASS	AC=1;AF=0.5;AN=2;DP=134;MQ=60;set=filterInvariant13-filterInvariant25-variant28-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:21,8:29:83:83,0,1415:1,20,8,0
chr1	236917161	.	A	C	80.78	PASS	AC=1;AF=0.5;AN=2;DP=112;MQ=60;set=filterInvariant25-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,8:34:99:131,0,633:5,21,8,0
chr1	236923198	.	G	A	98.39	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.922;QD=12.3;ReadPosRankSum=-1.368;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:127,0,150:0,4,0,4
chr1	236924506	.	A	G	680.85	PASS	AC=2;AF=0.872;AN=2;DP=3390;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2829,287,0:0,0,43,53
chr1	236924732	.	CGTGTGTGT	C,CGTGTGTGTGTGT,CGT,CGTGTGTGTGT,CGTGTGTGTGTGTGT,CGTGT	272.02	PASS	AC=0,0,1,0,0,0;AF=0.013,0.115,0.564,0.064,0.026,0.026;AN=2;DP=398;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:5:62:0,2,0,3
chr1	236924740	.	T	C	48.88	PASS	AC=1;AF=0.703;AN=2;DP=302;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:29:114,0,29:0,1,0,3
chr1	236925844	.	G	A	2136.61	PASS	AC=1;AF=0.538;AN=2;DP=2294;MQ=60;set=variant3-variant5-variant6-variant10-variant12-variant16-variant20-variant22-variant23-variant25-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:104,80:184:99:1828,0,2540:52,52,41,39
chr1	236926030	.	A	G	1320.86	PASS	AC=1;AF=0.697;AN=2;DP=5499;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,50:120:99:998,0,1751:40,30,25,25
chr1	236926366	.	C	G	3893.62	PASS	AC=1;AF=0.697;AN=2;DP=11892;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,141:289:99:3516,0,3814:73,75,72,69
chr1	236926445	.	T	C	4008.94	PASS	AC=1;AF=0.763;AN=2;DP=13127;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:168,134:302:99:3399,0,4302:85,83,68,66
chr1	236926643	.	G	C	1502.17	PASS	AC=1;AF=0.538;AN=2;DP=1097;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant10-variant12-variant16-variant20-variant22-variant23-variant25-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,42:89:99:1143,0,1452:12,35,12,30
chr1	236926667	.	A	G	721.39	PASS	AC=1;AF=0.697;AN=2;DP=2387;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,37:73:99:1048,0,1017:11,25,9,28
chr1	236958532	.	G	T	347.39	PASS	AC=2;AF=0.65;AN=2;DP=1238;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1421,120,0:0,0,27,13
chr1	236958646	.	G	A	2087.4	PASS	AC=1;AF=0.5;AN=2;DP=140;FS=0.641;FractionInformativeReads=1;MQ=60;MQRankSum=0.937;QD=14.91;ReadPosRankSum=1.561;SOR=0.627;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,83:140:99:2116,0,1470:34,23,48,35
chr1	236978992	.	T	TTCTG	580.66	PASS	AC=2;AF=0.729;AN=2;DP=1002;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:1080,72,0:0,0,6,18
chr1	236987790	.	G	T	185.88	PASS	AC=1;AF=0.63;AN=2;DP=594;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,25:32:99:650,0,169:1,6,8,17
chr1	236988593	.	A	AT	359.72	PASS	AC=1;AF=0.63;AN=2;DP=1093;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:438,0,381:10,5,13,4
chr1	236990141	.	G	A	1547.57	PASS	AC=1;AF=0.5;AN=2;DP=280;FractionInformativeReads=1;MQ=60;set=variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,49:121:99:1094,0,1823:30,42,23,26
chr1	237001926	.	A	G	503.99	PASS	AC=1;AF=0.63;AN=2;DP=1522;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:532,0,574:7,13,5,14
chr1	237002003	.	T	C	328.29	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.702;QD=18.24;ReadPosRankSum=1.452;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:357,0,140:1,5,3,9
chr1	237016145	.	A	G	217.59	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=3.233;FractionInformativeReads=1;MQ=60;MQRankSum=-1.059;QD=13.6;ReadPosRankSum=0;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:246,0,306:7,2,7,0
chr1	237023333	.	T	C	139.14	PASS	AC=1;AF=0.671;AN=2;DP=558;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,9:11:54:311,0,54:0,2,2,7
chr1	237024397	.	CT	C,CTTTT,CTT,CTTT	99	PASS	AC=0,0,0,1;AF=0.143,0.071,0.214,0.071;AN=2;DP=175;set=variant8-variant12-filterInvariant21-filterInvariant24-filterInvariant27-variant29-variant41	GT:DP:GQ:SB	0/4:13:99:1,3,8,1
chr1	237024414	.	G	T	221.33	PASS	AC=1;AF=0.5;AN=2;DP=418;set=variant2-filterInvariant3-filterInvariant10-filterInvariant15-filterInvariant16-variant19-variant22-variant24-filterInvariant25-variant28-variant29-filterInvariant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:169,0,1496:10,7,8,1
chr1	237024416	.	C	T	221.33	PASS	AC=1;AF=0.5;AN=2;DP=338;set=variant2-filterInvariant3-variant10-variant12-filterInvariant15-filterInvariant22-variant24-variant25-filterInvariant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,9:31:99:160,0,1591:14,8,8,1
chr1	237024423	.	A	T	204.55	PASS	AC=1;AF=0.5;AN=2;DP=84;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,7:37:99:110,0,1732:21,9,6,1
chr1	237038008	.	TA	AA,TAAA,T	915.19	PASS	AC=1,0,0;AF=0.533,0.1,0.033;AN=2;DP=513;set=variant21-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant4-variant36-variant37-variant41-variant43	GT:DP:GQ:SB	0/1:25:81:4,2,16,3
chr1	237048562	.	G	A	186.13	PASS	AC=2;AF=0.714;AN=2;DP=1198;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1055,84,0:0,0,5,23
chr1	237049879	.	C	T	722.7	PASS	AC=1;AF=0.63;AN=2;DP=1719;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,24:66:99:628,0,1005:17,25,6,18
chr1	237054569	.	A	G	1106.71	PASS	AC=1;AF=0.63;AN=2;DP=2849;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,50:91:99:1192,0,1016:16,25,20,30
chr1	237057608	.	G	A	465.02	PASS	AC=1;AF=0.672;AN=2;DP=2469;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,33:79:99:807,0,1400:35,11,23,10
chr1	237058744	.	C	A	2037.59	PASS	AC=1;AF=0.63;AN=2;DP=5570;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:85,103:188:99:2502,0,2153:47,38,46,57
chr1	237058828	.	C	T	1268.69	PASS	AC=1;AF=0.638;AN=2;DP=3846;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant12-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,57:121:99:1492,0,1643:32,32,21,36
chr1	237058996	.	C	CTATT	508.33	PASS	AC=2;AF=0.729;AN=2;DP=1586;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1485,99,0:0,0,10,23
chr1	237060372	.	A	G	1535	PASS	AC=1;AF=0.5;AN=2;DP=124;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.458;QD=12.38;ReadPosRankSum=-2.172;SOR=0.648;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,60:124:99:1563,0,1633:27,37,26,34
chr1	237060433	.	G	T	1046.6	PASS	AC=2;AF=0.714;AN=2;DP=3448;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2160,210,0:0,0,28,42
chr1	237060850	.	T	C	935.41	PASS	AC=1;AF=0.5;AN=2;DP=510;FractionInformativeReads=1;MQ=60;set=variant13-variant26-variant34-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,33:77:99:706,0,1129:27,17,19,14
chr1	237060945	.	CT	C,CTT	43.73	PASS	AC=1,0;AF=0.5,0.023;AN=2;DP=1868;set=filterInvariant4-filterInvariant5-filterInvariant6-variant7-variant8-variant12-filterInvariant14-filterInvariant15-variant18-variant24-filterInvariant25-variant28-variant29-filterInvariant30-filterInvariant32-filterInvariant34-filterInvariant36-filterInvariant37-variant38-variant39-variant40-variant41	GT:DP:GQ:SB	0/1:61:99:18,21,8,14
chr1	237061056	.	A	C	574.95	PASS	AC=1;AF=0.672;AN=2;DP=1884;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,15:41:99:418,0,683:13,13,5,10
chr1	237061138	.	T	C	625.66	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=7.118;FractionInformativeReads=1;MQ=60;MQRankSum=-1.09;QD=15.64;ReadPosRankSum=-2.403;SOR=1.218;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,25:40:99:654,0,393:9,6,9,16
chr1	237061704	.	GT	G	38.84	PASS	AC=2;AF=0.76;AN=2;DP=304;MQ=60;set=variant3-variant4-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant21-variant24-variant25-variant26-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:316,36,0:0,0,2,10
chr1	237062198	.	A	C	314.8	PASS	AC=2;AF=0.729;AN=2;DP=1594;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1659,132,0:0,0,35,9
chr1	237062305	.	A	G	1903.77	PASS	AC=2;AF=0.729;AN=2;DP=5575;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:5087,479,0:0,0,94,66
chr1	237063335	.	G	C	3318.72	PASS	AC=1;AF=0.7;AN=2;DP=8656;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:122,110:232:99:2862,0,3396:59,63,52,58
chr1	237063504	.	A	G	2950.44	PASS	AC=1;AF=0.63;AN=2;DP=7738;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant13-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:108,162:270:99:4129,0,2662:51,57,81,81
chr1	237063709	.	T	TA,TAA	1238.61	PASS	AC=2,0;AF=0.7,0.029;AN=2;DP=4939;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:93:99:2,2,34,55
chr1	237063823	.	G	A	281.74	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.76;QD=14.09;ReadPosRankSum=-1.216;SOR=0.976;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:310,0,226:3,6,3,8
chr1	237064266	.	C	G	553.57	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.3;QD=13.5;ReadPosRankSum=1.839;SOR=0.61;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:582,0,491:10,11,10,10
chr1	237064626	.	T	G	583.29	PASS	AC=1;AF=0.672;AN=2;DP=1125;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,19:25:99:593,0,153:2,4,6,13
chr1	237065326	.	C	T	682.02	PASS	AC=1;AF=0.688;AN=2;DP=2637;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,42:83:99:1091,0,1032:21,20,24,18
chr1	237065405	.	T	G	1008.91	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0.812;FractionInformativeReads=1;MQ=60;MQRankSum=-0.444;QD=11.87;ReadPosRankSum=-1.746;SOR=0.573;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,41:85:99:1037,0,1164:20,24,20,21
chr1	237065485	.	C	T	1214.71	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=0.818;FractionInformativeReads=1;MQ=60;MQRankSum=3.561;QD=14.12;ReadPosRankSum=3.491;SOR=0.689;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,48:86:99:1243,0,1043:18,20,25,23
chr1	237065583	.	G	T	906.82	PASS	AC=2;AF=0.729;AN=2;DP=2477;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2260,220,0:0,0,31,43
chr1	237066780	.	C	CT	5219.53	PASS	AC=1;AF=0.5;AN=2;DP=1160;MQ=60;set=variant13-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:180,200:380:99:6304,0,5590:81,99,95,105
chr1	237066826	.	G	A	2685.36	PASS	AC=1;AF=0.5;AN=2;DP=2654;MQ=60;set=variant13-variant24-variant26-variant34-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:152,145:297:99:3852,0,3847:68,84,61,84
chr1	237066853	.	C	T	2382.46	PASS	AC=1;AF=0.5;AN=2;DP=2226;MQ=60;set=variant13-variant24-variant26-variant34-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:132,128:260:99:3254,0,3513:52,80,52,76
chr1	237067311	.	G	C	30.2	PASS	AC=2;AF=0.571;AN=2;DP=64;MQ=60;set=variant13-variant24-variant26-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:86,9,0:0,0,2,1
chr1	237167508	.	T	C	204.87	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=0;FractionInformativeReads=1;MQ=59.74;MQRankSum=-3.789;QD=2.38;ReadPosRankSum=-3.22;SOR=0.772;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:75,11:86:99:233,0,9597:39,36,6,5
chr1	237167511	.	C	T	234.82	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=1.176;FractionInformativeReads=1;MQ=59.74;MQRankSum=-0.691;QD=2.64;ReadPosRankSum=-2.324;SOR=0.927;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:77,12:89:99:263,0,9928:40,37,7,5
chr1	237167514	.	A	C	279.82	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=1.159;FractionInformativeReads=1;MQ=59.75;MQRankSum=-2.524;QD=3.07;ReadPosRankSum=-1.866;SOR=0.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:78,13:91:99:308,0,9869:42,36,8,5
chr1	237167525	.	G	A	299.92	PASS	AC=1;AF=0.5;AN=2;DP=97;FS=0;FractionInformativeReads=1;MQ=59.77;MQRankSum=-1.894;QD=3.09;ReadPosRankSum=0.108;SOR=0.804;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:83,14:97:99:328,0,9871:50,33,9,5
chr1	237167635	.	T	C	1194.88	PASS	AC=1;AF=0.5;AN=2;DP=192;FS=5.397;FractionInformativeReads=1;MQ=59.81;MQRankSum=-0.973;QD=6.22;ReadPosRankSum=0.634;SOR=0.641;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:151,41:192:99:1223,0,9516:86,65,19,22
chr1	237167643	.	T	A	1164.11	PASS	AC=1;AF=0.5;AN=2;DP=194;FS=6.73;FractionInformativeReads=1;MQ=59.81;MQRankSum=-1.866;QD=6;ReadPosRankSum=-1.067;SOR=0.709;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:154,40:194:99:1192,0,9824:88,66,18,22
chr1	237167649	.	G	C	1088.75	PASS	AC=1;AF=0.5;AN=2;DP=194;FS=8.311;FractionInformativeReads=1;MQ=59.81;MQRankSum=-2.011;QD=5.61;ReadPosRankSum=1.5;SOR=0.816;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:157,37:194:99:1117,0,9984:89,68,16,21
chr1	237167650	.	G	T	1046.76	PASS	AC=1;AF=0.5;AN=2;DP=193;FS=10.09;FractionInformativeReads=1;MQ=59.81;MQRankSum=-0.422;QD=5.42;ReadPosRankSum=0.941;SOR=0.896;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:157,36:193:99:1075,0,9987:90,67,15,21
chr1	237167691	.	C	T	557.69	PASS	AC=1;AF=0.5;AN=2;DP=208;FS=1.676;FractionInformativeReads=0.995;MQ=59.84;MQRankSum=-2.145;QD=2.68;ReadPosRankSum=-1.459;SOR=0.933;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:180,27:207:99:586,0,9273:84,96,11,16
chr1	237167694	.	C	A	551.7	PASS	AC=1;AF=0.5;AN=2;DP=210;FS=1.675;FractionInformativeReads=0.995;MQ=59.84;MQRankSum=-2.351;QD=2.63;ReadPosRankSum=-2.576;SOR=0.934;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:182,27:209:99:580,0,9318:85,97,11,16
chr1	237433625	.	C	T	769.9	PASS	AC=1;AF=0.595;AN=2;DP=1454;MQ=60;set=variant2-variant3-variant5-variant10-variant11-variant12-variant13-variant15-variant19-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant35-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,32:70:99:940,0,1035:18,20,14,18
chr1	237519389	.	G	A	611.03	PASS	AC=1;AF=0.5;AN=2;DP=302;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,43:76:99:1013,0,878:13,20,17,26
chr1	237551241	.	G	GTC	688.29	PASS	AC=1;AF=0.757;AN=2;DP=1240;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:458,0,749:15,4,8,3
chr1	237551376	.	T	A	1216.98	PASS	AC=1;AF=0.757;AN=2;DP=4418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,58:122:99:1483,0,1715:29,35,35,23
chr1	237580606	.	G	T	376.77	PASS	AC=2;AF=0.829;AN=2;DP=453;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:679,48,0:0,0,1,15
chr1	237580612	.	G	C	376.77	PASS	AC=2;AF=0.829;AN=2;DP=417;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:679,48,0:0,0,1,15
chr1	237617757	.	C	T	1126.56	PASS	AC=2;AF=0.697;AN=2;DP=3526;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2852,290,0:0,0,57,40
chr1	237619875	.	AT	ATT,A,ATTT	538.87	PASS	AC=1,0,0;AF=0.475,0.213,0.013;AN=2;DP=5142;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:110:84:9,8,54,39
chr1	237620049	.	T	C	1904.71	PASS	AC=2;AF=0.681;AN=2;DP=4545;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3702,333,0:0,0,38,73
chr1	237632285	.	A	AT	415.75	PASS	AC=2;AF=0.681;AN=2;DP=819;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:48:643,48,0:0,0,13,2
chr1	237632595	.	T	TGTG	154.45	PASS	AC=2;AF=0.691;AN=2;DP=447;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:315,21,0:0,0,0,7
chr1	237654831	.	G	T	1034.67	PASS	AC=2;AF=0.768;AN=2;DP=1289;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1080,93,0:0,0,24,7
chr1	237655173	.	A	T	436.53	PASS	AC=1;AF=0.5;AN=2;DP=123;FractionInformativeReads=1;MQ=60;set=variant19-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:486,0,469:9,12,6,13
chr1	237656185	.	A	AAGGGAGGG,AAGGGAGGGAGGG,AAGGG	607.43	PASS	AC=0,0,2;AF=0.705,0.013,0.051;AN=2;DP=870;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	3/3:11:36:0,0,11,0
chr1	237670140	.	A	G	3662.52	PASS	AC=2;AF=0.727;AN=2;DP=3285;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2404,248,0:0,0,46,37
chr1	237693921	.	A	G	699.9	PASS	AC=2;AF=0.872;AN=2;DP=686;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:674,57,0:0,0,3,16
chr1	237711644	.	T	C	366.49	PASS	AC=2;AF=0.965;AN=2;DP=1040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:960,75,0:0,0,20,5
chr1	237711797	.	A	G	2293.18	PASS	AC=2;AF=0.965;AN=2;DP=5194;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3904,377,0:0,0,65,61
chr1	237730124	.	A	G	2581.66	PASS	AC=2;AF=0.977;AN=2;DP=3147;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2726,210,0:0,0,11,59
chr1	237730169	.	C	T	1098.23	PASS	AC=2;AF=0.989;AN=2;DP=1427;MQ=60;MQRankSum=-1.017;ReadPosRankSum=2.444;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1397,104,0:0,0,1,34
chr1	237788862	.	T	C	274.74	PASS	AC=1;AF=0.882;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,2:10:60:60,0,206:5,3,2,0
chr1	237794603	.	A	G	500.3	PASS	AC=1;AF=0.842;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:221,0,143:4,0,6,2
chr1	237794913	.	ATTTTTTTTTTTTTT	ATT,A,ATTT,AT,ATTTTTTTTTTTTTTTT	486.27	PASS	AC=2,0,0,0,0;AF=0.333,0.083,0.125,0.104,0.042;AN=2;DP=465;set=variant2-variant3-variant5-variant6-variant7-variant11-variant12-variant13-variant15-variant18-variant19-variant20-variant25-variant26-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:11:27:0,1,0,10
chr1	237794986	.	T	TGAA	62.42	PASS	AC=2;AF=0.722;AN=2;DP=80;FS=0;set=variant2-variant3-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant33-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,1,3
chr1	237794989	.	ACG	A	172.69	PASS	AC=2;AF=0.75;AN=2;DP=75;FS=0;set=variant2-variant3-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant25-variant33-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:12:180,12,0:0,0,1,2
chr1	237796759	.	G	C	525.33	PASS	AC=1;AF=0.56;AN=2;DP=1212;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,17:55:99:283,0,1044:23,15,10,7
chr1	237796837	.	G	A	825.57	PASS	AC=2;AF=0.578;AN=2;DP=2210;MQ=60;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1621,166,0:0,0,28,28
chr1	237797082	.	T	G	171.61	PASS	AC=2;AF=0.614;AN=2;DP=140;MQ=60;set=variant2-variant3-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant19-variant20-variant24-variant27-variant28-variant32-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:284,21,0:0,0,0,7
chr1	237797103	.	C	A	47.18	PASS	AC=1;AF=0.615;AN=2;DP=57;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant10-variant12-variant14-variant16-variant19-variant27-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:65:65,0,78:0,2,0,2
chr1	237798450	.	G	A	326.82	PASS	AC=1;AF=0.565;AN=2;DP=478;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:280,0,520:0,14,0,9
chr1	237801770	.	T	C	5355.09	PASS	AC=1;AF=0.966;AN=2;DP=8149;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:76,61:137:99:1504,0,2041:33,43,23,38
chr1	237802559	.	T	C	1567.79	PASS	AC=2;AF=1;AN=2;DP=2648;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1933,198,0:0,0,28,38
chr1	237813126	.	A	G	180.37	PASS	AC=2;AF=0.606;AN=2;DP=380;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:299,21,0:0,0,7,0
chr1	237814783	.	C	T	973.77	PASS	AC=2;AF=0.603;AN=2;DP=2690;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1849,177,0:0,0,20,39
chr1	237814898	.	C	A	106.89	PASS	AC=2;AF=0.613;AN=2;DP=299;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:204,15,0:0,0,0,5
chr1	237817514	.	GA	G	261.65	PASS	AC=1;AF=0.609;AN=2;DP=693;MQ=60;set=variant3-variant5-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant27-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:426,0,288:11,2,10,8
chr1	237817784	.	A	G	466.46	PASS	AC=1;AF=0.548;AN=2;DP=577;MQ=60;set=variant3-variant9-variant12-variant13-variant14-variant15-variant18-variant20-variant22-variant27-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:297,0,595:3,15,1,9
chr1	237819014	.	C	G	469.97	PASS	AC=1;AF=0.571;AN=2;DP=370;MQ=60;set=variant3-variant9-variant12-variant13-variant14-variant15-variant18-variant20-variant22-variant27-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:330,0,225:6,0,9,0
chr1	237824332	.	G	A	332.98	PASS	AC=2;AF=1;AN=2;DP=405;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:238,30,0:0,0,4,6
chr1	237831103	.	C	A	510.44	PASS	AC=2;AF=1;AN=2;DP=675;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:450,45,0:0,0,8,7
chr1	237850666	.	C	CT,CTT	594.53	PASS	AC=1,0;AF=0.347,0.181;AN=2;DP=1371;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:40:99:13,7,15,5
chr1	237862164	.	G	C	1577.79	PASS	AC=1;AF=0.774;AN=2;DP=1693;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,17:28:99:464,0,251:7,4,12,5
chr1	237863439	.	G	A	1416.83	PASS	AC=1;AF=0.774;AN=2;DP=1430;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:770,0,541:15,8,19,8
chr1	237863718	.	T	G	2441.52	PASS	AC=2;AF=1;AN=2;DP=3448;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1634,159,0:0,0,22,31
chr1	237865203	.	C	T	2314.22	PASS	AC=2;AF=1;AN=2;DP=2470;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1825,159,0:0,0,39,14
chr1	237872471	.	A	G	144.64	PASS	AC=1;AF=0.5;AN=2;DP=39;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:173,0,295:1,8,1,5
chr1	237872636	.	A	T	116.28	PASS	AC=2;AF=1;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;QD=29.07;SOR=3.258;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:145,12,0:0,0,4,0
chr1	237872710	.	G	GC	619.23	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=1.85;FractionInformativeReads=1;MQ=60;MQRankSum=0.305;QD=24.77;ReadPosRankSum=0.693;SOR=1.292;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:656,0,407:7,3,12,3
chr1	237872712	.	TG	T	619.23	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.612;QD=22.12;ReadPosRankSum=0.376;SOR=0.656;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,17:28:99:656,0,407:8,3,12,5
chr1	237872714	.	GT	G	576.49	PASS	AC=1;AF=0.989;AN=2;DP=1161;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:219,0,684:13,5,8,3
chr1	237881770	.	C	T	2312.87	PASS	AC=2;AF=1;AN=2;DP=4126;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2830,296,0:0,0,51,48
chr1	237890437	.	C	T	5356.7	PASS	AC=2;AF=1;AN=2;DP=9201;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4846,467,0:0,0,72,84
chr1	237893467	.	A	G	342.08	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=2.452;FractionInformativeReads=1;MQ=60;MQRankSum=0.421;QD=19;ReadPosRankSum=0.609;SOR=1.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:370,0,169:4,2,10,2
chr1	237893674	.	C	T	1980.16	PASS	AC=2;AF=1;AN=2;DP=2523;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,53:55:99:1517,142,0:2,0,25,28
chr1	237905570	.	CT	C,CTT,CCTT,CTTT	43.08	PASS	AC=0,0,0,1;AF=0.2,0.233,0.033,0.033;AN=2;DP=368;MQ=60;set=filterInvariant3-variant4-variant10-variant14-variant15-filterInvariant17-variant18-variant26-variant27-variant29-filterInvariant32-filterInvariant37-variant40-variant41-variant43	GT:DP:GQ:SB	0/4:20:99:7,6,4,3
chr1	237923053	.	C	T	2856.52	PASS	AC=2;AF=0.744;AN=2;DP=4040;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2641,247,0:0,0,53,30
chr1	237946964	.	T	C	2834.14	PASS	AC=2;AF=0.646;AN=2;DP=1530;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant20-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2012,177,0:0,0,41,18
chr1	237951451	.	A	G	698.95	PASS	AC=2;AF=0.694;AN=2;DP=1941;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1760,156,0:0,0,15,37
chr1	237955364	.	A	G	441.54	PASS	AC=1;AF=0.5;AN=2;DP=307;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant12-variant16-variant29-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,36:59:99:889,0,616:17,6,23,13
chr1	237955649	.	CTGTGTGTGTG	CTGTGTGTG,CTGTGTG,C,CTG,CTGTG	523.66	PASS	AC=0,0,1,0,0;AF=0.303,0.348,0.106,0.076,0.03;AN=2;DP=1249;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-filterInvariant11-variant12-variant15-variant16-variant17-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:DP:GQ:SB	0/3:20:99:3,8,3,6
chr1	237955698	.	CGT	C,TGT	1037.34	PASS	AC=2,0;AF=0.647,0.118;AN=2;DP=290;set=variant18-variant5-variant19-variant8-variant21-variant23-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant38-variant17-variant40-variant41	GT:DP:GQ:SB	1/1:7:21:0,0,0,7
chr1	237955701	.	G	A	191.87	PASS	AC=1;AF=0.5;AN=2;DP=96;set=variant18-variant20-variant29-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:173,0,167:2,5,0,5
chr1	237957146	.	G	A	104.69	PASS	AC=2;AF=0.75;AN=2;DP=917;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:730,66,0:0,0,15,7
chr1	237957161	.	A	G	109.49	PASS	AC=2;AF=0.744;AN=2;DP=1273;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1242,108,0:0,0,26,10
chr1	237957309	.	A	C	775.96	PASS	AC=2;AF=0.744;AN=2;DP=2717;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2517,249,0:0,0,35,48
chr1	237958750	.	A	AT	64.96	PASS	AC=2;AF=0.727;AN=2;DP=545;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:158,18,0:0,0,0,6
chr1	237964934	.	A	G	340.43	PASS	AC=1;AF=0.716;AN=2;DP=520;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:256,0,189:4,1,7,0
chr1	237965035	.	C	A	505.3	PASS	AC=1;AF=0.621;AN=2;DP=1473;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant16-variant17-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:872,0,1305:17,13,12,10
chr1	237965043	.	A	G	564.42	PASS	AC=1;AF=0.621;AN=2;DP=1609;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant16-variant17-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:911,0,1302:18,13,14,10
chr1	237965094	.	G	T	647.92	PASS	AC=1;AF=0.621;AN=2;DP=2185;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant16-variant17-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:811,0,864:14,17,16,17
chr1	237965131	.	G	A	789.06	PASS	AC=1;AF=0.603;AN=2;DP=2324;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant16-variant17-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:1211,0,991:15,19,19,15
chr1	237965133	.	AT	ATT,ATTT,A	1264.76	PASS	AC=0,1,0;AF=0.431,0.121,0.017;AN=2;DP=2340;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant16-variant17-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:65:99:16,21,16,12
chr1	237969638	.	A	G	841.1	PASS	AC=2;AF=0.563;AN=2;DP=810;MQ=60;set=variant-variant2-variant5-variant9-variant10-variant11-variant12-variant22-variant26-variant30-variant33-variant34-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1394,117,0:0,0,11,28
chr1	237996581	.	GA	GAA,G,GAAA	650.32	PASS	AC=0,1,0;AF=0.539,0.066,0.013;AN=2;DP=1610;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:24:99:3,12,3,6
chr1	238045590	.	C	T	84.96	PASS	AC=1;AF=0.609;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant19-variant21-variant25-variant26-variant29-variant35-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:187,0,160:5,1,5,0
chr1	238045995	.	T	C	1515.58	PASS	AC=1;AF=0.529;AN=2;DP=1748;MQ=60;set=variant-variant6-variant9-variant10-variant11-variant14-variant15-variant19-variant20-variant25-variant26-variant36-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,47:106:99:1158,0,1530:33,26,26,21
chr1	238046253	.	T	C	124.68	PASS	AC=1;AF=0.643;AN=2;DP=358;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:192,0,138:1,4,0,5
chr1	238048325	.	A	G	1300.54	PASS	AC=2;AF=0.895;AN=2;DP=2388;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2134,191,0:0,0,33,31
chr1	238050043	.	T	C	652.45	PASS	AC=1;AF=0.5;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,25:39:99:835,0,362:10,4,21,4
chr1	238050136	.	T	C	1190.29	PASS	AC=1;AF=0.5;AN=2;DP=179;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,59:88:99:1553,0,663:17,12,33,26
chr1	238050555	.	A	G	834.24	PASS	AC=1;AF=0.5;AN=2;DP=200;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,47:115:99:1189,0,1856:38,30,30,17
chr1	238051479	.	G	A	647.2	PASS	AC=1;AF=0.5;AN=2;DP=104;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:549,0,434:9,11,14,11
chr1	238051533	.	G	A	795.19	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=2.34;FractionInformativeReads=1;MQ=60;MQRankSum=0.754;QD=14.46;ReadPosRankSum=2.07;SOR=0.416;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,34:55:99:823,0,510:13,8,18,16
chr1	238051592	.	T	A	645.67	PASS	AC=1;AF=0.5;AN=2;DP=138;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:946,0,926:22,12,20,14
chr1	238051933	.	C	T	193.2	PASS	AC=1;AF=0.643;AN=2;DP=659;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:94:94,0,374:2,9,1,3
chr1	238053118	.	A	G	209.16	PASS	AC=1;AF=0.5;AN=2;DP=46;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:255,0,416:7,10,6,2
chr1	238053129	.	A	C	168.33	PASS	AC=1;AF=0.5;AN=2;DP=931;set=variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant10-variant11-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant21-filterInvariant22-filterInvariant23-filterInvariant26-filterInvariant27-variant29-variant30-variant31-variant32-filterInvariant35-filterInvariant38-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:71:71,0,581:4,13,7,0
chr1	238053132	.	A	C	387.49	PASS	AC=1;AF=0.5;AN=2;DP=644;set=variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant10-variant11-filterInvariant14-filterInvariant18-filterInvariant19-variant21-variant23-filterInvariant26-variant29-variant30-variant31-variant32-filterInvariant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:97:97,0,577:4,12,6,1
chr1	238053316	.	C	G	992.95	PASS	AC=1;AF=0.5;AN=2;DP=209;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,52:107:99:1350,0,1208:29,26,28,24
chr1	238107361	.	C	T	54.21	PASS	AC=2;AF=0.784;AN=2;DP=522;FS=0;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:580,63,0:0,0,12,9
chr1	238108482	.	C	T	3102.8	PASS	AC=2;AF=0.756;AN=2;DP=9082;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,182:183:99:5364,538,0:0,1,111,71
chr1	240073226	.	C	T	7427.32	PASS	AC=1;AF=0.667;AN=2;DP=5415;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:85,67:152:99:1639,0,2054:44,41,29,38
chr1	240073619	.	G	A	1014.68	PASS	AC=1;AF=0.625;AN=2;DP=600;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,13:36:99:399,0,751:5,18,5,8
chr1	240074468	.	C	T	4366.74	PASS	AC=1;AF=0.5;AN=2;DP=332;FS=0.398;FractionInformativeReads=1;MQ=60;MQRankSum=3.733;QD=13.15;ReadPosRankSum=-1.547;SOR=0.649;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:168,164:332:99:4395,0,4494:89,79,85,79
chr1	240074847	.	T	TA	1012.85	PASS	AC=1;AF=0.529;AN=2;DP=1715;MQ=60;set=variant3-variant4-variant7-variant8-variant13-variant16-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,30:84:99:530,0,1145:25,29,11,19
chr1	240074981	.	A	G	10164.4	PASS	AC=1;AF=0.607;AN=2;DP=7345;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:95,125:220:99:3117,0,2147:51,44,72,53
chr1	240075752	.	A	G	231.41	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=1.421;FractionInformativeReads=1;MQ=60;MQRankSum=0.547;QD=6.09;ReadPosRankSum=-0.612;SOR=1.172;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,11:38:99:260,0,705:13,14,4,7
chr1	240075857	.	G	A	402.38	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.818;QD=10.59;ReadPosRankSum=-1.493;SOR=0.751;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,16:38:99:431,0,549:12,10,9,7
chr1	240076608	.	A	G	2286.94	PASS	AC=1;AF=0.529;AN=2;DP=2218;MQ=60;set=variant3-variant4-variant7-variant8-variant13-variant16-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,61:122:99:1638,0,1652:40,21,35,26
chr1	240076650	.	AT	A	2885.9	PASS	AC=1;AF=0.5;AN=2;DP=395;MQ=60;set=variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,82:175:99:1935,0,2163:55,38,46,36
chr1	240077309	.	A	G	932.6	PASS	AC=1;AF=0.605;AN=2;DP=930;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant13-variant16-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:560,0,458:5,10,8,9
chr1	240077616	.	T	C	5028.25	PASS	AC=1;AF=0.5;AN=2;DP=346;FS=3.511;FractionInformativeReads=1;MQ=60;MQRankSum=0.79;QD=14.53;ReadPosRankSum=3.528;SOR=0.534;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:147,199:346:99:5056,0,3692:63,84,94,105
chr1	240077913	.	A	G	1590.92	PASS	AC=1;AF=0.5;AN=2;DP=144;FS=5.068;FractionInformativeReads=1;MQ=60;MQRankSum=-0.325;QD=11.05;ReadPosRankSum=0.281;SOR=1.146;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:79,65:144:99:1619,0,2144:41,38,40,25
chr1	240078057	.	C	A	1351.43	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.123;QD=16.48;ReadPosRankSum=-1.356;SOR=0.653;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,43:82:99:1380,0,1062:15,24,17,26
chr1	240254828	.	T	C	335.77	PASS	AC=2;AF=0.872;AN=2;DP=302;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:301,24,0:0,0,6,2
chr1	240254874	.	T	C	644.47	PASS	AC=2;AF=0.85;AN=2;DP=706;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:625,57,0:0,0,12,7
chr1	240255568	.	GGGC	G	1502.47	PASS	AC=2;AF=0.821;AN=2;DP=2516;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,46:47:99:1973,134,0:0,1,34,12
chr1	240286376	.	C	T	370.78	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.665;QD=11.59;ReadPosRankSum=-0.095;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:399,0,541:14,4,11,3
chr1	240286806	.	A	AC	168.13	PASS	AC=1;AF=0.5;AN=2;DP=47;set=variant21-variant22-variant27-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:8:467,0,8:0,3,0,12
chr1	240286807	.	A	AC	168.13	PASS	AC=1;AF=0.5;AN=2;DP=36;FractionInformativeReads=1;set=variant21-variant22-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:8:467,0,8:0,3,0,12
chr1	240351628	.	T	C	2795.91	PASS	AC=2;AF=0.639;AN=2;DP=7455;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,177:178:99:5735,522,0:0,1,81,96
chr1	240370629	.	C	G	3521.42	PASS	AC=1;AF=0.596;AN=2;DP=7076;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant28-variant29-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,93:224:99:2211,0,3529:64,67,45,48
chr1	240370913	.	TGCCCCCTCTACCCGGAGCGGGAATACCTCCTCC	T	2054.16	PASS	AC=1;AF=0.5;AN=2;DP=1294;set=variant2-variant4-variant6-variant10-variant11-variant12-variant13-variant16-variant18-variant29-variant32-variant33-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:1018,0,1724:9,25,8,20
chr1	240408572	.	C	G	698.13	PASS	AC=2;AF=0.673;AN=2;DP=537;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant16-variant19-variant21-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:671,54,0:0,0,14,4
chr1	240408789	.	G	A	1060.21	PASS	AC=2;AF=0.563;AN=2;DP=602;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant23-variant25-variant30-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2153,230,0:0,0,40,37
chr1	240421383	.	G	A	1612.52	PASS	AC=2;AF=0.763;AN=2;DP=1556;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1269,114,0:0,0,10,28
chr1	240448468	.	T	C	808.69	PASS	AC=1;AF=0.5;AN=2;DP=97;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.221;QD=8.34;ReadPosRankSum=1.208;SOR=0.767;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,38:97:99:837,0,1367:33,26,22,16
chr1	240492414	.	T	C	1846.28	PASS	AC=1;AF=0.5;AN=2;DP=316;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:76,68:144:99:1718,0,1896:43,33,41,27
chr1	240492543	.	G	A	2867.43	PASS	AC=2;AF=0.676;AN=2;DP=2679;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,79:80:99:2688,194,0:0,1,27,52
chr1	240492734	.	G	A	2008.37	PASS	AC=1;AF=0.625;AN=2;DP=3865;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,71:138:99:1778,0,1613:33,34,35,36
chr1	240492952	.	G	C	281.81	PASS	AC=1;AF=0.621;AN=2;DP=465;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,4:17:99:115,0,384:4,9,0,4
chr1	240497265	.	A	C	2181.69	PASS	AC=2;AF=0.7;AN=2;DP=2413;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1489,150,0:0,0,26,24
chr1	240497598	.	T	C	276.9	PASS	AC=1;AF=0.596;AN=2;DP=374;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:207,0,365:1,9,1,6
chr1	240519251	.	CAAAAAAAAAAAAAAAAAAAAA	CA,CAA,C,CAAA	360.19	PASS	AC=0,2,0,0;AF=0.19,0.452,0.024,0.024;AN=2;DP=823;MQ=60;set=variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant14-variant17-variant22-variant23-variant24-variant27-variant30-variant31-variant35-variant36-variant38-variant39-variant41-variant42	GT:DP:GQ:SB	2/2:29:51:0,1,7,21
chr1	240601222	.	T	C	83.27	PASS	AC=1;AF=0.5;AN=2;DP=48;FractionInformativeReads=1;MQ=60;set=variant12-variant19-variant28-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:226,0,158:5,1,6,0
chr1	240601269	.	A	G	733.76	PASS	AC=2;AF=0.953;AN=2;DP=1253;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1064,93,0:0,0,23,8
chr1	240638586	.	T	C	156.22	PASS	AC=1;AF=0.769;AN=2;DP=154;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant9-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:93:93,0,113:1,3,1,3
chr1	240643167	.	A	C	428.67	PASS	AC=1;AF=0.621;AN=2;DP=479;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:95:95,0,380:10,1,3,1
chr1	240643184	.	C	T	496.03	PASS	AC=1;AF=0.638;AN=2;DP=654;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant11-variant13-variant14-variant15-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:177,0,415:11,3,6,1
chr1	240643435	.	A	T,ACCCTTGGGAGGTGTTATCTCAAAATCCTTCTCCAAGGTGAAACCATT	849.88	PASS	AC=1,0;AF=0.565,0.065;AN=2;DP=784;set=variant8-variant13-variant14-variant15-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:35:99:4,14,4,13
chr1	240652889	.	A	G	824.76	PASS	AC=1;AF=0.533;AN=2;DP=660;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant20-variant23-variant24-variant25-variant27-variant28-variant30-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:384,0,778:20,5,10,3
chr1	240652947	.	A	G	5709.78	PASS	AC=1;AF=0.833;AN=2;DP=5514;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,55:127:99:1352,0,1870:47,25,37,18
chr1	240653862	.	C	T	279.58	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=3.259;FractionInformativeReads=1;MQ=60;MQRankSum=0.926;QD=7.36;ReadPosRankSum=-1.617;SOR=1.508;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,12:38:99:308,0,668:11,15,3,9
chr1	240775061	.	C	T	159.14	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.485;QD=11.37;ReadPosRankSum=-2.259;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:187,0,262:7,1,5,1
chr1	240775103	.	C	T	656.95	PASS	AC=1;AF=0.837;AN=2;DP=1378;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:495,0,317:8,4,13,7
chr1	240975213	.	T	C	2405.74	PASS	AC=1;AF=0.708;AN=2;DP=2239;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:699,0,472:13,10,18,9
chr1	240975435	.	C	T	675.73	PASS	AC=1;AF=0.708;AN=2;DP=917;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:417,0,205:2,6,1,12
chr1	240977964	.	G	T	1021.91	PASS	AC=1;AF=0.78;AN=2;DP=1056;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:369,0,421:10,8,10,4
chr1	240979803	.	G	A	151.77	PASS	AC=1;AF=0.833;AN=2;DP=392;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:184,0,147:0,4,0,5
chr1	240990571	.	C	T	1034.82	PASS	AC=1;AF=0.5;AN=2;DP=130;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,40:66:99:1176,0,679:8,18,11,29
chr1	241099872	.	T	C	897.63	PASS	AC=1;AF=0.5;AN=2;DP=210;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,31:52:99:741,0,426:12,9,17,14
chr1	241100122	.	G	T	402.73	PASS	AC=1;AF=0.7;AN=2;DP=151;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:76:76,0,119:1,2,1,2
chr1	241519098	.	T	A	1858.54	PASS	AC=2;AF=0.989;AN=2;DP=3363;FS=0;MQ=60;MQRankSum=0.259;ReadPosRankSum=-2.058;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2252,213,0:0,0,28,43
chr1	241520188	.	T	C	1896.62	PASS	AC=2;AF=0.989;AN=2;DP=2917;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1483,150,0:0,0,31,19
chr1	241663825	.	G	A	1789.68	PASS	AC=1;AF=0.5;AN=2;DP=150;FS=1.284;FractionInformativeReads=1;MQ=59.96;MQRankSum=1.818;QD=11.93;ReadPosRankSum=-0.137;SOR=0.827;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,70:150:99:1818,0,2110:42,38,39,31
chr1	241663902	.	TGAGA	TGAGAGA,TGAGAGAGA,TGAGAGAGAGA,TGA,TGAGAGAGAGAGAGAGAGA,TGAGAGAGAGAGA,TGAGAGAGAGAGAGAGA,TGAGAGAGAGAGAGA,T	991.71	PASS	AC=1,0,0,0,1,0,0,0,0;AF=0.148,0.284,0.159,0.023,0.068,0.034,0.034,0.011,0.011;AN=2;DP=4382;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/5:40:99:4,5,10,21
chr1	241667244	.	G	T	1989.07	PASS	AC=1;AF=0.756;AN=2;DP=1664;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,10:34:99:259,0,765:19,5,8,2
chr1	241675119	.	G	C	154.44	PASS	AC=1;AF=0.545;AN=2;DP=214;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant9-variant11-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:183,0,197:5,1,6,0
chr1	241676758	.	C	T	688.9	PASS	AC=1;AF=0.604;AN=2;DP=1242;MQ=60;set=variant-variant6-variant8-variant9-variant11-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:745,0,565:15,5,20,5
chr1	241676972	.	G	A	1132.51	PASS	AC=1;AF=0.5;AN=2;DP=106;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.433;QD=10.68;ReadPosRankSum=1.649;SOR=0.663;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,50:106:99:1161,0,1447:22,34,20,30
chr1	241712134	.	C	T	1201.5	PASS	AC=1;AF=0.62;AN=2;DP=1305;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant12-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:492,0,737:15,15,12,10
chr1	241713163	.	A	G	254.95	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.473;QD=15.93;ReadPosRankSum=-0.368;SOR=1.371;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:283,0,230:2,6,1,7
chr1	241718781	.	G	A	154.71	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.633;QD=15.47;ReadPosRankSum=0.633;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:183,0,111:3,1,5,1
chr1	241719173	.	T	C	244.2	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=3.802;FractionInformativeReads=1;MQ=60;MQRankSum=-0.831;QD=20.35;ReadPosRankSum=1.134;SOR=2.419;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:272,0,151:1,4,0,7
chr1	241729614	.	T	G	412.07	PASS	AC=1;AF=0.927;AN=2;DP=440;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:193,0,154:4,1,5,1
chr1	241729687	.	AAGCTCCCTGGTCAC	A	350.81	PASS	AC=1;AF=0.524;AN=2;DP=886;MQ=60;set=variant-variant3-variant7-variant12-variant15-variant16-variant18-variant20-variant21-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,10:31:99:357,0,993:13,8,7,3
chr1	241730153	.	G	T	602.96	PASS	AC=1;AF=0.898;AN=2;DP=1022;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:490,0,502:3,14,1,13
chr1	241755925	.	A	G	2457.4	PASS	AC=1;AF=0.556;AN=2;DP=1526;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant12-variant17-variant18-variant24-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,65:139:99:1514,0,1748:31,43,25,40
chr1	241756057	.	C	CATCT,CATCTATCT	140.9	PASS	AC=2,0;AF=0.7,0.28;AN=2;DP=548;FS=0;MQ=60;MQRankSum=0.322;ReadPosRankSum=0.322;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant21-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant44	GT:DP:GQ:SB	1/1:2:5:0,0,0,2
chr1	241757549	.	G	T	1370.48	PASS	AC=1;AF=0.575;AN=2;DP=1694;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant19-variant25-variant27-variant30-variant32-variant34-variant35-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,41:76:99:1141,0,940:14,21,15,26
chr1	241758302	.	T	C	2949.35	PASS	AC=1;AF=0.5;AN=2;DP=1640;MQ=60;set=variant4-variant11-variant12-variant17-variant18-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:95,78:173:99:1921,0,2498:46,49,38,40
chr1	241758631	.	A	G	1420.98	PASS	AC=1;AF=0.528;AN=2;DP=1823;MQ=60;set=variant4-variant5-variant7-variant8-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:1074,0,1245:31,13,26,9
chr1	241767755	.	G	A	2165.56	PASS	AC=1;AF=0.5;AN=2;DP=150;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.899;QD=14.44;ReadPosRankSum=-2.772;SOR=0.686;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:63,87:150:99:2194,0,1691:31,32,44,43
chr1	241767930	.	G	A	1494.71	PASS	AC=2;AF=0.966;AN=2;DP=4390;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3076,307,0:0,0,39,64
chr1	241794056	.	C	A	4423.55	PASS	AC=1;AF=0.606;AN=2;DP=8218;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,114:230:99:3152,0,3030:56,60,48,66
chr1	241794231	.	C	T	2863.38	PASS	AC=1;AF=0.6;AN=2;DP=8617;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,96:221:99:2594,0,3319:53,72,50,46
chr1	241796284	.	A	G	1717.46	PASS	AC=1;AF=0.711;AN=2;DP=5197;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,68:108:99:2056,0,1078:28,12,38,30
chr1	241796947	.	ATGC	A	8420.9	PASS	AC=1;AF=0.595;AN=2;DP=8758;MQ=60;set=variant-variant3-variant7-variant9-variant12-variant13-variant17-variant24-variant26-variant28-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:202,187:389:99:7164,0,8563:107,95,99,88
chr1	241803636	.	T	C	464.99	PASS	AC=1;AF=0.703;AN=2;DP=1406;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:533,0,375:6,6,7,7
chr1	241803658	.	A	G	504.26	PASS	AC=1;AF=0.716;AN=2;DP=1406;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:500,0,409:6,6,7,7
chr1	241803731	.	AC	A	62.96	PASS	AC=1;AF=0.714;AN=2;DP=684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:249,0,256:4,6,4,6
chr1	241886754	.	T	C	1108.8	PASS	AC=1;AF=0.5;AN=2;DP=711;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant12-variant17-variant25-variant26-variant33-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:1008,0,1799:9,22,6,20
chr1	241886764	.	A	G	1079.07	PASS	AC=1;AF=0.5;AN=2;DP=595;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant12-variant17-variant25-variant26-variant33-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:930,0,1688:2,21,5,18
chr1	241901818	.	G	A	647.48	PASS	AC=1;AF=0.5;AN=2;DP=74;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,9:33:99:144,0,745:6,18,4,5
chr1	241907817	.	T	C	714.63	PASS	AC=1;AF=0.645;AN=2;DP=2524;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,52:83:99:1300,0,715:15,16,25,27
chr1	241907833	.	C	T	655.81	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,46:69:99:1196,0,601:10,13,22,24
chr1	241913062	.	C	CT	346.52	PASS	AC=1;AF=0.722;AN=2;DP=1713;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:432,0,450:5,13,5,12
chr1	241920470	.	T	C	166.47	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=3.522;FractionInformativeReads=1;MQ=60;MQRankSum=2.219;QD=18.5;ReadPosRankSum=1.307;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:195,0,110:3,1,5,0
chr1	241920634	.	T	C	1047.99	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.593;QD=13.1;ReadPosRankSum=-0.708;SOR=0.761;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,42:80:99:1076,0,883:22,16,25,17
chr1	241935987	.	AC	A	424.37	PASS	AC=1;AF=0.583;AN=2;DP=448;set=variant-variant2-variant3-variant8-variant12-variant15-variant17-variant19-variant23-variant24-variant28-variant29-variant30-variant32-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:492,0,292:7,2,12,2
chr1	241951034	.	C	T	140.9	PASS	AC=1;AF=0.654;AN=2;DP=516;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:283,0,303:8,1,9,1
chr1	241951106	.	A	G	1323.61	PASS	AC=1;AF=0.648;AN=2;DP=2314;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,35:85:99:831,0,1233:31,19,21,14
chr1	241954005	.	TAA	TA,T	218.45	PASS	AC=1,0;AF=0.5,0.171;AN=2;DP=1432;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:41:99:9,11,8,13
chr1	241958401	.	C	CTTGT	1214.25	PASS	AC=1;AF=0.583;AN=2;DP=695;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant12-variant15-variant17-variant19-variant23-variant24-variant28-variant29-variant30-variant32-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:609,0,1883:16,5,12,3
chr1	241958409	.	C	T	1324.15	PASS	AC=1;AF=0.583;AN=2;DP=841;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant8-variant12-variant15-variant17-variant19-variant23-variant24-variant28-variant29-variant30-variant32-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:678,0,1945:17,6,14,5
chr1	241959762	.	A	G	289.67	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=1.714;FractionInformativeReads=1;MQ=60;MQRankSum=-0.882;QD=11.14;ReadPosRankSum=1.661;SOR=1.075;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:318,0,413:4,11,2,9
chr1	242011406	.	T	C	106.77	PASS	AC=1;AF=0.797;AN=2;DP=537;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:117,0,105:3,0,3,0
chr1	242011534	.	A	G	654.11	PASS	AC=1;AF=0.694;AN=2;DP=2738;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:685,0,586:14,8,15,13
chr1	242012033	.	G	A	652.91	PASS	AC=1;AF=0.7;AN=2;DP=1518;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:448,0,681:17,4,11,4
chr1	242012149	.	C	T	2955.56	PASS	AC=1;AF=0.633;AN=2;DP=5639;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,86:164:99:2143,0,1923:49,29,52,34
chr1	242012554	.	C	T	85.66	PASS	AC=1;AF=0.661;AN=2;DP=613;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:293,0,251:4,7,3,7
chr1	242013592	.	A	AC	314.93	PASS	AC=1;AF=0.661;AN=2;DP=1464;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:469,0,552:14,4,12,3
chr1	242020495	.	C	T	689.09	PASS	AC=1;AF=0.681;AN=2;DP=1192;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:422,0,561:14,6,12,2
chr1	242030151	.	A	G	1117.66	PASS	AC=1;AF=0.686;AN=2;DP=3334;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,48:78:99:1289,0,791:19,11,33,15
chr1	242042545	.	A	G	1472.27	PASS	AC=1;AF=0.671;AN=2;DP=4694;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,78:136:99:1770,0,1329:26,32,36,42
chr1	242042690	.	A	G	1751.8	PASS	AC=1;AF=0.805;AN=2;DP=2002;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,27:46:99:625,0,455:6,13,10,17
chr1	242045275	.	C	T	4356.29	PASS	AC=2;AF=0.989;AN=2;DP=5320;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2656,281,0:0,0,48,46
chr1	242048514	.	G	GTAAA,GTAAATAAA,GTAAATAAATAAA	148.84	PASS	AC=0,2,0;AF=0.362,0.534,0.052;AN=2;DP=124;FS=0;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	2/2:3:15:0,0,2,1
chr1	242048945	.	C	T	71.28	PASS	AC=1;AF=0.75;AN=2;DP=118;FractionInformativeReads=1;set=variant-variant6-variant7-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:65:75,0,65:1,2,0,2
chr1	242053042	.	A	G	6341.63	PASS	AC=1;AF=0.872;AN=2;DP=6856;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,77:146:99:1969,0,1684:32,37,34,43
chr1	242053270	.	G	A	645.39	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=4.727;FractionInformativeReads=1;MQ=60;MQRankSum=-1.215;QD=14.34;ReadPosRankSum=-2.736;SOR=1.528;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:674,0,645:8,14,5,18
chr1	242120914	.	G	A	285.1	PASS	AC=2;AF=0.703;AN=2;DP=732;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:556,45,0:0,0,14,1
chr1	242120953	.	T	C	394.52	PASS	AC=1;AF=0.611;AN=2;DP=992;MQ=60;set=variant-variant4-variant5-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:623,0,341:10,4,15,5
chr1	242159220	.	CA	CAA,C	388.17	PASS	AC=1,0;AF=0.556,0.028;AN=2;DP=895;MQ=60;set=variant-filterInvariant2-variant5-variant9-variant12-variant14-variant15-variant18-variant23-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:46:99:14,10,14,8
chr1	242161553	.	G	A	148.72	PASS	AC=2;AF=0.976;AN=2;DP=312;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:235,24,0:0,0,4,4
chr1	242161619	.	C	A	509.23	PASS	AC=1;AF=0.966;AN=2;DP=931;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:88:88,0,219:5,4,3,1
chr1	242161679	.	G	A	1585.37	PASS	AC=1;AF=0.966;AN=2;DP=2139;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:446,0,409:11,6,10,8
chr1	242252961	.	A	G	4186.88	PASS	AC=2;AF=0.545;AN=2;DP=2837;MQ=60;set=variant-variant6-variant12-variant13-variant16-variant19-variant23-variant31-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,224:224:99:6743,669,0:0,0,116,108
chr1	242428834	.	T	A	212.13	PASS	AC=1;AF=0.5;AN=2;DP=33;FractionInformativeReads=1;set=variant16-variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:64:223,0,64:0,2,1,6
chr1	242511556	.	AACAAAG	A	2961.67	PASS	AC=1;AF=0.837;AN=2;DP=3857;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:1416,0,2520:13,22,13,24
chr1	243217226	.	C	T	35.96	PASS	AC=1;AF=0.5;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=58.82;MQRankSum=-1.231;QD=7.19;ReadPosRankSum=0.358;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:64:64,0,162:2,1,1,1
chr1	243217227	.	T	C	35.96	PASS	AC=1;AF=0.5;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=58.82;MQRankSum=-1.231;QD=7.19;ReadPosRankSum=-1.231;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:64:64,0,162:2,1,1,1
chr1	243217395	.	A	G	227.21	PASS	AC=1;AF=0.808;AN=2;DP=380;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant28-filterInvariant29-variant31-variant32-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,4:20:99:112,0,861:9,7,4,0
chr1	243217975	.	G	A	76.65	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=2.276;FractionInformativeReads=1;MQ=60;MQRankSum=0.696;QD=5.9;ReadPosRankSum=0.271;SOR=0.799;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:105,0,260:3,5,3,2
chr1	243219466	.	G	A	104.66	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=44.61;MQRankSum=-0.352;QD=4.76;ReadPosRankSum=-0.352;SOR=1.085;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:99:133,0,360:9,6,5,2
chr1	243219531	.	C	T	259.35	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=1.527;FractionInformativeReads=1;MQ=41.99;MQRankSum=0.171;QD=9.61;ReadPosRankSum=0.464;SOR=0.943;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:288,0,427:7,8,7,5
chr1	243220107	.	A	G	94.55	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=95;FS=0;FractionInformativeReads=1;MQ=37.34;MQRankSum=-1.359;QD=1;ReadPosRankSum=-0.72;SOR=0.732;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:82,13:95:99:123,0,1931:43,39,7,6
chr1	243220243	.	G	A	555.19	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=3.361;FractionInformativeReads=1;MQ=39.31;MQRankSum=-3.134;QD=8.54;ReadPosRankSum=0.891;SOR=0.511;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:583,0,1033:15,21,15,14
chr1	243288181	.	CT	C,CTT	57.41	PASS	AC=1,0;AF=0.429,0.071;AN=2;DP=465;set=filterInvariant6-variant10-filterInvariant11-filterInvariant24-filterInvariant33-filterInvariant37-variant41	GT:DP:GQ:SB	0/1:51:99:15,16,7,13
chr1	243291379	.	T	G	164.17	PASS	AC=1;AF=0.538;AN=2;DP=136;FractionInformativeReads=1;set=variant6-variant9-variant10-variant11-variant15-variant17-variant19-variant23-variant24-variant25-variant27-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:61:191,0,61:2,0,5,1
chr1	243292859	.	GAAAA	G	40.69	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=49.43;MQRankSum=-1.026;QD=10.17;ReadPosRankSum=1.026;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:78:78,0,112:1,1,0,2
chr1	243329049	.	G	A	1578.1	PASS	AC=1;AF=0.5;AN=2;DP=9905;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-filterInvariant8-variant9-filterInvariant10-variant11-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant18-filterInvariant20-variant21-variant23-filterInvariant24-variant26-filterInvariant27-variant28-variant31-variant32-variant33-variant34-variant35-filterInvariant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:182,57:239:99:738,0,5127:93,89,25,32
chr1	243329075	.	T	C	932.91	PASS	AC=1;AF=0.5;AN=2;DP=8415;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-filterInvariant8-variant9-filterInvariant10-variant11-variant13-filterInvariant16-variant18-filterInvariant21-filterInvariant23-filterInvariant24-variant26-filterInvariant28-variant31-variant32-filterInvariant33-filterInvariant34-variant35-filterInvariant37-variant38-variant39-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:185,45:230:99:466,0,5286:99,86,20,25
chr1	243335940	.	GA	G	392.16	PASS	AC=1;AF=0.542;AN=2;DP=467;set=variant2-variant4-variant5-variant11-variant12-variant13-variant19-variant21-variant22-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:179,0,206:7,2,4,4
chr1	243362331	.	C	T	1630.25	PASS	AC=2;AF=0.872;AN=2;DP=1838;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1291,111,0:0,0,33,4
chr1	243388643	.	A	G	1068.73	PASS	AC=1;AF=0.5;AN=2;DP=175;FractionInformativeReads=1;MQ=60;set=variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,43:88:99:1165,0,1043:19,26,13,30
chr1	243419194	.	C	T	433.87	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.902;QD=12.05;ReadPosRankSum=-0.016;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:462,0,510:13,5,13,5
chr1	243419429	.	T	A	2740.38	PASS	AC=1;AF=0.558;AN=2;DP=4300;MQ=60;set=variant2-variant4-variant5-variant7-variant11-variant12-variant13-variant19-variant21-variant22-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,77:154:99:1932,0,1945:35,42,36,41
chr1	243449881	.	G	A	253.61	PASS	AC=1;AF=0.574;AN=2;DP=980;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant19-variant21-variant22-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:567,0,429:7,10,8,15
chr1	243456643	.	A	C	631.26	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.31;QD=20.36;ReadPosRankSum=-0.475;SOR=0.551;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,20:31:99:659,0,319:6,5,10,10
chr1	243465061	.	G	A	30.69	PASS	AC=2;AF=0.974;AN=2;DP=208;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:242,27,0:0,0,7,2
chr1	243481431	.	A	G	3071.34	PASS	AC=1;AF=0.648;AN=2;DP=2854;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant19-variant21-variant22-variant24-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,42:67:99:962,0,565:12,13,20,22
chr1	243493484	.	C	T	435.13	PASS	AC=1;AF=0.583;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant19-variant21-variant24-variant26-variant28-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:99:99,0,250:5,4,3,0
chr1	243507680	.	C	CA	816.44	PASS	AC=1;AF=0.648;AN=2;DP=934;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant23-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:408,0,408:4,9,2,11
chr1	243579112	.	G	A	1588.74	PASS	AC=1;AF=0.617;AN=2;DP=1346;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:427,0,449:5,12,4,11
chr1	243662942	.	G	GT	200.33	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=2.031;FractionInformativeReads=1;MQ=60;MQRankSum=-1.692;QD=8.01;ReadPosRankSum=2.357;SOR=1.214;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:238,0,381:12,3,9,1
chr1	243667900	.	T	G	264.48	PASS	AC=1;AF=0.571;AN=2;DP=615;set=variant3-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant24-variant27-variant29-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:463,0,361:3,9,2,12
chr1	243667938	.	TTA	T	111.45	PASS	AC=2;AF=1;AN=2;DP=6;FS=0;FractionInformativeReads=0.667;MQ=60;QD=18.57;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:149,12,0:0,0,2,2
chr1	244013347	.	ACGGCGG	A	40.81	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=0.667;MQ=60;MQRankSum=1.026;QD=6.8;ReadPosRankSum=-1.026;SOR=0.105;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:78:78,0,147:2,0,1,1
chr1	244218958	.	T	C	2876.86	PASS	AC=1;AF=0.5;AN=2;DP=225;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.153;QD=12.79;ReadPosRankSum=1.292;SOR=0.704;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:110,115:225:99:2905,0,2823:51,59,53,62
chr1	244219033	.	GT	G	1612.42	PASS	AC=1;AF=0.5;AN=2;DP=163;FS=7.216;FractionInformativeReads=0.914;MQ=60;MQRankSum=2.838;QD=9.89;ReadPosRankSum=2.808;SOR=1.132;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:74,75:149:99:1650,0,1625:38,36,30,45
chr1	244219563	.	A	G	1714.15	PASS	AC=2;AF=1;AN=2;DP=3051;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2013,150,0:0,0,18,32
chr1	244219574	.	A	G	735.31	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=4.422;FractionInformativeReads=1;MQ=60;MQRankSum=0.776;QD=16.71;ReadPosRankSum=2.28;SOR=1.445;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,26:44:99:764,0,484:9,9,9,17
chr1	244516090	.	T	C	811.91	PASS	AC=2;AF=0.837;AN=2;DP=903;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:697,60,0:0,0,8,12
chr1	244528127	.	T	C	1514.76	PASS	AC=1;AF=0.818;AN=2;DP=1513;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:6,21:27:99:605,0,116:2,4,6,15
chr1	244538930	.	TG	T	145.76	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=0;MQ=60;set=variant9-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:183,0,260:0,8,0,6
chr1	244541709	.	G	A	279.36	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.882;QD=10.74;ReadPosRankSum=-1.713;SOR=0.919;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:308,0,456:10,5,8,3
chr1	244552394	.	C	T	3161.63	PASS	AC=1;AF=0.5;AN=2;DP=337;FS=2.341;FractionInformativeReads=1;MQ=60;MQRankSum=2.447;QD=9.38;ReadPosRankSum=0.344;SOR=0.823;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:192,145:337:99:3190,0,4629:100,92,80,65
chr1	244572632	.	G	GA	888.63	PASS	AC=2;AF=0.786;AN=2;DP=3518;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1812,197,0:0,0,36,30
chr1	244601152	.	C	T	2227.05	PASS	AC=2;AF=0.857;AN=2;DP=2664;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1626,159,0:0,0,23,30
chr1	244624635	.	G	C	2276.28	PASS	AC=1;AF=0.708;AN=2;DP=2669;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,51:78:99:1416,0,614:18,9,33,18
chr1	244624887	.	T	C	2844.68	PASS	AC=1;AF=0.679;AN=2;DP=4029;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,44:101:99:1033,0,1386:20,37,20,24
chr1	244626948	.	CA	C	122.86	PASS	AC=1;AF=0.588;AN=2;DP=212;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant23-variant27-variant32-variant35-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:65:111,0,65:3,1,5,2
chr1	244641216	.	C	A	1414.29	PASS	AC=1;AF=0.5;AN=2;DP=782;FractionInformativeReads=1;MQ=60;set=variant25-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:89,56:145:99:1244,0,2132:43,46,31,25
chr1	244716145	.	A	G	111.47	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.307;QD=12.39;ReadPosRankSum=-0.361;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:140,0,160:1,4,0,4
chr1	244724277	.	C	T	1407.56	PASS	AC=1;AF=0.5;AN=2;DP=136;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.731;QD=10.35;ReadPosRankSum=-1.355;SOR=0.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,56:136:99:1436,0,2370:41,39,28,28
chr1	244773784	.	T	C	1170.1	PASS	AC=1;AF=0.795;AN=2;DP=1081;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:272,0,295:4,8,3,7
chr1	244773803	.	T	C	876.22	PASS	AC=2;AF=0.739;AN=2;DP=786;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:580,42,0:0,0,3,11
chr1	244803205	.	CTTT	CT,CTT,C	2919.06	PASS	AC=2,0,0;AF=0.727,0.25,0.023;AN=2;DP=4095;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:73:99:1,0,41,31
chr1	244803490	.	C	CGTA	12172.2	PASS	AC=1;AF=0.756;AN=2;DP=10479;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,104:179:99:4104,0,3309:31,44,44,60
chr1	244803821	.	AT	A	461.36	PASS	AC=1;AF=0.955;AN=2;DP=1081;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,17:28:99:446,0,257:2,9,6,11
chr1	244816257	.	C	T	493.86	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.119;QD=12.05;ReadPosRankSum=0.622;SOR=0.542;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:522,0,361:10,7,13,11
chr1	244816970	.	G	T	740.74	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=3.604;FractionInformativeReads=1;MQ=60;MQRankSum=-0.955;QD=16.83;ReadPosRankSum=1.827;SOR=1.659;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:769,0,575:15,5,21,3
chr1	244869639	.	A	C	1063.8	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=0.81;FractionInformativeReads=1;MQ=60;MQRankSum=-0.116;QD=12.66;ReadPosRankSum=-1.405;SOR=0.798;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,41:84:99:1092,0,1162:23,20,23,18
chr1	244870871	.	G	T	412.27	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.613;QD=17.92;ReadPosRankSum=1.646;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:441,0,227:4,4,7,8
chr1	244993308	.	CT	C,CTT,CTTT	109.47	PASS	AC=0,0,1;AF=0.333,0.083,0.083;AN=2;DP=423;set=filterInvariant3-filterInvariant8-filterInvariant25-variant37-filterInvariant39-variant41	GT:DP:GQ:SB	0/3:33:99:3,12,7,11
chr1	244998752	.	C	T	1461.85	PASS	AC=1;AF=0.5;AN=2;DP=151;FS=0;FractionInformativeReads=0.993;MQ=60;MQRankSum=1.184;QD=9.68;ReadPosRankSum=-0.513;SOR=0.65;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,69:150:99:1490,0,1876:42,39,35,34
chr1	245005373	.	A	G	670.72	PASS	AC=1;AF=0.579;AN=2;DP=892;FractionInformativeReads=1;set=variant2-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:775,0,563:13,11,13,16
chr1	245006492	.	T	TAGAAA	1105.5	PASS	AC=1;AF=0.579;AN=2;DP=1007;set=variant2-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,27:63:99:1025,0,2421:26,10,22,5
chr1	245008066	.	CA	C,CAA	117.15	PASS	AC=1,0;AF=0.417,0.083;AN=2;DP=1240;set=filterInvariant-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant11-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant24-filterInvariant26-filterInvariant29-variant34-filterInvariant41-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:65:99:32,21,9,3
chr1	245015454	.	A	C	2936.96	PASS	AC=1;AF=0.5;AN=2;DP=204;FS=1.719;FractionInformativeReads=1;MQ=60;MQRankSum=-1.313;QD=14.4;ReadPosRankSum=1.063;SOR=0.826;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:96,108:204:99:2965,0,2802:53,43,63,45
chr1	245018456	.	TAGCA	T	229.69	PASS	AC=1;AF=0.556;AN=2;DP=463;MQ=60;set=variant2-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:180,0,552:4,6,1,4
chr1	245021132	.	C	G	375.21	PASS	AC=1;AF=0.556;AN=2;DP=458;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:302,0,275:1,7,5,3
chr1	245022424	.	C	T	233.1	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=3.039;FractionInformativeReads=1;MQ=60;MQRankSum=-1.359;QD=12.95;ReadPosRankSum=0.091;SOR=1.911;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:261,0,321:9,2,7,0
chr1	245022553	.	A	C	990.11	PASS	AC=1;AF=0.5;AN=2;DP=194;FractionInformativeReads=1;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,41:85:99:956,0,977:23,21,23,18
chr1	245025692	.	A	T	151.63	PASS	AC=1;AF=0.588;AN=2;DP=399;set=variant2-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant28-variant29-variant30-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:351,0,309:6,2,9,0
chr1	245025693	.	C	T	62.64	PASS	AC=1;AF=0.5;AN=2;DP=39;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:348,0,336:6,2,9,0
chr1	245025697	.	T	TA,TAA,TAAA,TAAAAAAAAA	485.6	PASS	AC=2,0,0,0;AF=0.405,0.119,0.131,0.012;AN=2;DP=1359;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:22:75:0,0,19,3
chr1	245027349	.	C	T	1685.33	PASS	AC=1;AF=0.567;AN=2;DP=2278;set=variant-variant8-variant13-variant15-variant16-variant18-variant21-variant22-variant26-variant27-variant30-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,72:122:99:2085,0,1242:20,30,22,50
chr1	245133489	.	T	G	988.8	PASS	AC=1;AF=0.682;AN=2;DP=3256;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:956,0,949:21,24,21,21
chr1	245133539	.	A	G	3079.18	PASS	AC=2;AF=1;AN=2;DP=3384;FS=0;MQ=60;MQRankSum=0.385;ReadPosRankSum=1.655;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:3225,250,0:0,0,42,41
chr1	245133549	.	GGC	G	769.67	PASS	AC=1;AF=0.682;AN=2;DP=2474;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,36:79:99:1258,0,1510:25,18,17,19
chr1	245133623	.	T	TCCTCC	1497.25	PASS	AC=1;AF=0.697;AN=2;DP=2570;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,34:87:99:1370,0,2099:27,26,16,18
chr1	245133662	.	G	C	1181.39	PASS	AC=1;AF=0.655;AN=2;DP=2914;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,45:117:99:1141,0,1934:34,38,22,23
chr1	245179011	.	CAA	CA,C	284.77	PASS	AC=2,0;AF=0.571,0.129;AN=2;DP=1332;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-filterInvariant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:37:99:0,0,23,14
chr1	245179171	.	C	T	453.45	PASS	AC=2;AF=0.727;AN=2;DP=1571;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1447,105,0:0,0,12,23
chr1	245179188	.	G	T	420.59	PASS	AC=2;AF=0.757;AN=2;DP=1274;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:75:1125,75,0:0,0,8,16
chr1	245222634	.	C	G	1228.52	PASS	AC=2;AF=0.966;AN=2;DP=1377;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1235,99,0:0,0,26,7
chr1	245222839	.	G	T	1889.44	PASS	AC=2;AF=1;AN=2;DP=3134;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,50:51:99:1643,142,0:0,1,14,36
chr1	245245378	.	T	C	1481.42	PASS	AC=1;AF=0.682;AN=2;DP=2697;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,34:80:99:1223,0,2207:21,25,15,19
chr1	245245402	.	C	T	1344.47	PASS	AC=1;AF=0.682;AN=2;DP=2511;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,37:79:99:1262,0,2146:18,24,14,23
chr1	245251020	.	G	T	78.67	PASS	AC=1;AF=0.688;AN=2;DP=671;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:198,0,376:8,9,6,4
chr1	245251140	.	T	G	61.77	PASS	AC=2;AF=0.986;AN=2;DP=191;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:245,18,0:0,0,0,6
chr1	245285401	.	A	ATGT	247.63	PASS	AC=1;AF=0.55;AN=2;DP=70;set=variant3-variant5-variant12-variant15-variant17-variant32-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:56:249,0,56:1,0,5,0
chr1	245285405	.	T	C	256.67	PASS	AC=1;AF=0.55;AN=2;DP=76;FractionInformativeReads=1;set=variant3-variant5-variant12-variant15-variant17-variant32-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:99:246,0,143:2,0,6,0
chr1	245285407	.	T	A	256.67	PASS	AC=1;AF=0.55;AN=2;DP=78;FractionInformativeReads=1;set=variant3-variant5-variant12-variant15-variant17-variant32-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:99:246,0,143:2,0,6,0
chr1	245285409	.	GTGACCTC	G	247.63	PASS	AC=1;AF=0.55;AN=2;DP=79;FractionInformativeReads=1;set=variant3-variant5-variant12-variant15-variant17-variant32-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:99:246,0,143:2,0,6,0
chr1	245285464	.	C	T	355.32	PASS	AC=1;AF=0.5;AN=2;DP=40;FractionInformativeReads=1;set=variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:379,0,228:7,0,11,3
chr1	245286218	.	C	T	920.78	PASS	AC=1;AF=0.5;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant12-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:733,0,584:11,11,12,18
chr1	245287592	.	A	G	1025.26	PASS	AC=1;AF=0.5;AN=2;DP=1287;MQ=60;set=variant3-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant27-variant30-variant32-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,40:73:99:1045,0,883:13,20,20,20
chr1	245288493	.	A	G	1755.57	PASS	AC=1;AF=0.5;AN=2;DP=1911;MQ=60;set=variant3-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant27-variant30-variant32-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,44:96:99:1116,0,1579:18,34,17,27
chr1	245290190	.	A	T	943.7	PASS	AC=1;AF=0.5;AN=2;DP=208;MQ=60;set=variant12-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,26:67:99:742,0,1206:29,12,14,12
chr1	245290227	.	G	A	2074.3	PASS	AC=1;AF=0.5;AN=2;DP=2162;MQ=60;set=variant3-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant27-variant29-variant30-variant32-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,45:108:99:1128,0,1580:38,25,29,16
chr1	245318385	.	G	C	1462.88	PASS	AC=2;AF=0.943;AN=2;DP=2696;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1310,125,0:0,0,23,19
chr1	245318688	.	C	T	1364.82	PASS	AC=1;AF=0.63;AN=2;DP=4284;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant15-variant16-variant17-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,55:143:99:1218,0,2328:44,44,33,22
chr1	245674440	.	G	A	689.12	PASS	AC=1;AF=0.5;AN=2;DP=242;MQ=60;set=variant13-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,34:73:99:791,0,1052:15,24,12,22
chr1	245703990	.	G	T	3246.65	PASS	AC=1;AF=0.622;AN=2;DP=4691;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,52:121:99:1238,0,1767:39,30,29,23
chr1	245765800	.	T	A	778.3	PASS	AC=1;AF=0.646;AN=2;DP=1257;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant12-variant13-variant14-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant31-variant32-variant35-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,17:43:99:465,0,762:19,7,12,5
chr1	245775356	.	TTGTGTGTGTGTGTGTGTGTG	TTGTGTGTGTG,TTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTG,T,TTGTGTG	173.6	PASS	AC=0,0,0,0,0,1,0,0;AF=0.023,0.114,0.136,0.114,0.045,0.159,0.023,0.023;AN=2;DP=944;set=variant2-variant4-filterInvariant5-variant7-variant10-variant12-variant13-variant17-variant19-variant20-variant21-variant23-variant25-variant26-filterInvariant29-variant32-variant34-variant35-variant36-variant40-variant41-variant43	GT:DP:GQ:SB	0/6:18:99:4,6,0,8
chr1	245849516	.	G	A	4173.35	PASS	AC=1;AF=0.5;AN=2;DP=363;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.981;QD=11.5;ReadPosRankSum=-1.609;SOR=0.683;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:182,181:363:99:4202,0,4546:98,84,97,84
chr1	245850095	.	C	T	4614.63	PASS	AC=2;AF=0.587;AN=2;DP=10927;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant13-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,409:409:99:12465,1222,0:0,0,165,244
chr1	245851304	.	A	G	4698.41	PASS	AC=2;AF=0.977;AN=2;DP=8916;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,193:193:99:7030,579,0:0,0,89,104
chr1	245851328	.	C	T	2239.87	PASS	AC=1;AF=0.5;AN=2;DP=733;MQ=60;set=variant2-variant13-variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:91,82:173:99:1998,0,2351:44,47,35,47
chr1	245861571	.	C	T	616.14	PASS	AC=2;AF=0.75;AN=2;DP=1855;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1641,153,0:0,0,16,35
chr1	245866293	.	A	C	643.4	PASS	AC=1;AF=0.5;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant2-variant13-variant17-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,34:71:99:942,0,1014:26,11,21,13
chr1	245866511	.	T	C	2240.89	PASS	AC=1;AF=0.548;AN=2;DP=3606;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant13-variant15-variant16-variant17-variant18-variant26-variant27-variant28-variant30-variant32-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,96:165:99:2332,0,1718:29,40,40,56
chr1	245866584	.	G	C	1206.17	PASS	AC=1;AF=0.548;AN=2;DP=1722;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant13-variant15-variant16-variant17-variant18-variant26-variant27-variant28-variant30-variant32-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,43:82:99:1432,0,1032:18,21,8,35
chr1	245867357	.	G	GTGAT	708.93	PASS	AC=1;AF=0.563;AN=2;DP=1241;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant13-variant15-variant16-variant17-variant18-variant24-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,28:43:99:802,0,690:8,7,14,14
chr1	245867743	.	G	A	142.33	PASS	AC=1;AF=0.548;AN=2;DP=928;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant10-variant13-variant15-variant16-variant17-variant18-variant26-variant27-variant28-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:771,0,587:13,11,19,10
chr1	245867921	.	G	A	470.59	PASS	AC=1;AF=0.565;AN=2;DP=2071;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant13-variant15-variant16-variant17-variant18-variant24-variant26-variant27-variant28-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,61:107:99:1403,0,1079:24,22,29,32
chr1	245868167	.	G	GTCTT	2142.97	PASS	AC=1;AF=0.543;AN=2;DP=2877;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant10-variant13-variant15-variant16-variant17-variant18-variant24-variant26-variant27-variant28-variant30-variant32-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,40:86:99:1520,0,2622:22,24,20,20
chr1	245868363	.	G	T	639.88	PASS	AC=1;AF=0.5;AN=2;DP=924;MQ=60;set=variant2-variant3-variant13-variant15-variant16-variant17-variant18-variant24-variant26-variant27-variant28-variant30-variant32-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:426,0,618:12,10,8,9
chr1	245868504	.	C	G	1388.08	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=2.02;FractionInformativeReads=1;MQ=60;MQRankSum=0.289;QD=16.72;ReadPosRankSum=1.36;SOR=1.034;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,46:83:99:1416,0,1113:25,12,34,12
chr1	245869299	.	T	C	988	PASS	AC=1;AF=0.525;AN=2;DP=1213;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant13-variant15-variant16-variant17-variant18-variant21-variant25-variant27-variant28-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,37:66:99:915,0,797:11,18,17,20
chr1	245870732	.	A	C	2434.11	PASS	AC=1;AF=0.5;AN=2;DP=1023;MQ=60;set=variant13-variant17-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,110:219:99:2873,0,2581:59,50,56,54
chr1	245871108	.	G	A	555.63	PASS	AC=1;AF=0.526;AN=2;DP=711;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant9-variant13-variant15-variant16-variant19-variant20-variant22-variant23-variant28-variant29-variant31-variant34-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,15:42:99:367,0,863:16,11,9,6
chr1	245872219	.	T	C	3645.71	PASS	AC=2;AF=0.617;AN=2;DP=8856;MQ=60;set=variant2-variant4-variant6-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,277:277:99:8732,831,0:0,0,134,143
chr1	245872479	.	G	C	1047.51	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.178;QD=15.4;ReadPosRankSum=-0.454;SOR=0.804;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:1076,0,1130:16,17,16,19
chr1	245912840	.	C	T	2519.62	PASS	AC=1;AF=0.5;AN=2;DP=2315;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant8-variant10-variant16-variant19-variant22-variant26-variant27-variant29-variant30-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,43:88:99:1186,0,1418:23,22,21,22
chr1	245927199	.	T	C	564.35	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=4.349;FractionInformativeReads=1;MQ=60;MQRankSum=0.952;QD=20.9;ReadPosRankSum=1.569;SOR=1.828;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,18:27:99:593,0,172:6,3,15,3
chr1	246021881	.	G	A	1804.91	PASS	AC=1;AF=0.5;AN=2;DP=149;FS=0.606;FractionInformativeReads=1;MQ=60;MQRankSum=1.664;QD=12.11;ReadPosRankSum=-1.44;SOR=0.61;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,79:149:99:1833,0,1510:37,33,40,39
chr1	246022159	.	G	A	482.92	PASS	AC=2;AF=0.951;AN=2;DP=540;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:634,57,0:0,0,4,15
chr1	246027034	.	G	C	3297.52	PASS	AC=2;AF=1;AN=2;DP=3443;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1756,159,0:0,0,36,17
chr1	246079000	.	A	G	945.54	PASS	AC=1;AF=0.5;AN=2;DP=349;MQ=60;set=variant13-variant18-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,30:79:99:829,0,1334:17,32,8,22
chr1	246091456	.	ATG	A	1215.91	PASS	AC=1;AF=0.5;AN=2;DP=466;MQ=60;set=variant4-variant9-variant11-variant14-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,31:66:99:1186,0,1365:14,21,12,19
chr1	246091457	.	T	C	1163.96	PASS	AC=1;AF=0.92;AN=2;DP=2727;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,35:66:99:936,0,1187:12,19,14,21
chr1	246091459	.	C	CAG	1215.91	PASS	AC=1;AF=0.5;AN=2;DP=437;MQ=60;set=variant4-variant9-variant11-variant14-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:1186,0,1365:14,20,12,19
chr1	246091465	.	G	A	1159.22	PASS	AC=1;AF=0.5;AN=2;DP=408;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant11-variant14-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:1076,0,1280:11,19,11,15
chr1	246091516	.	G	A	350.13	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.794;QD=17.51;ReadPosRankSum=-1.323;SOR=1.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:378,0,346:2,8,1,9
chr1	246091531	.	T	C	466.77	PASS	AC=2;AF=0.977;AN=2;DP=755;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:861,63,0:0,0,3,18
chr1	246110895	.	G	A	482.8	PASS	AC=2;AF=0.577;AN=2;DP=290;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant10-variant13-variant16-variant18-variant25-variant29-variant32-variant33-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:668,45,0:0,0,1,14
chr1	246489196	.	C	T	9274.84	PASS	AC=2;AF=0.83;AN=2;DP=12755;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,262:262:99:7805,785,0:0,0,121,141
chr1	246489492	.	C	T	749.66	PASS	AC=1;AF=0.5;AN=2;DP=208;FractionInformativeReads=1;MQ=60;set=variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,32:79:99:722,0,1221:26,21,17,15
chr1	246489706	.	GA	G	1771.89	PASS	AC=1;AF=0.702;AN=2;DP=3324;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,31:70:99:667,0,918:19,20,12,19
chr1	246489769	.	TA	T,TAA	79.37	PASS	AC=1,0;AF=0.474,0.026;AN=2;DP=673;MQ=60;set=variant2-filterInvariant5-filterInvariant8-variant9-variant11-filterInvariant12-variant20-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant29-filterInvariant31-variant33-filterInvariant34-variant37-filterInvariant40-variant41-filterInvariant42	GT:DP:GQ:SB	0/1:32:99:8,15,3,6
chr1	246490438	.	T	C	1591.77	PASS	AC=2;AF=0.83;AN=2;DP=2820;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2659,181,0:0,0,41,16
chr1	246490442	.	A	G	1793.26	PASS	AC=2;AF=0.83;AN=2;DP=3015;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2811,193,0:0,0,44,19
chr1	246490452	.	G	A	1892.15	PASS	AC=1;AF=0.697;AN=2;DP=2962;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,31:66:99:855,0,931:22,13,23,8
chr1	246498866	.	A	C	1514.27	PASS	AC=1;AF=0.692;AN=2;DP=1326;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,9:29:99:296,0,676:3,17,0,9
chr1	246580688	.	AG	A	166.53	PASS	AC=1;AF=0.577;AN=2;DP=557;MQ=60;set=variant-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:241,0,401:8,6,6,3
chr1	246580718	.	G	A	119.97	PASS	AC=1;AF=0.58;AN=2;DP=591;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:199,0,459:9,8,6,5
chr1	246670281	.	G	C	1152.15	PASS	AC=2;AF=1;AN=2;DP=1829;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1055,99,0:0,0,19,14
chr1	246670297	.	CCCT	C	112.57	PASS	AC=1;AF=0.5;AN=2;DP=845;MQ=60;set=filterInvariant3-variant4-filterInvariant14-filterInvariant17-filterInvariant19-variant23-filterInvariant24-filterInvariant26-filterInvariant27-filterInvariant34-filterInvariant35-variant39-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,8:39:99:109,0,854:17,14,4,4
chr1	246670298	.	CCT	C	300.19	PASS	AC=1;AF=0.5;AN=2;DP=1881;MQ=60;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant32-filterInvariant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,15:39:99:298,0,683:12,12,9,6
chr1	246670300	.	T	C	211.94	PASS	AC=1;AF=0.5;AN=2;DP=78;MQ=60;set=variant38-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:30,10:40:91:91,0,1017:19,11,3,7
chr1	246670333	.	A	G	3552.91	PASS	AC=2;AF=1;AN=2;DP=3773;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2742,219,0:0,0,40,33
chr1	246670481	.	C	G	5019.18	PASS	AC=1;AF=0.849;AN=2;DP=18619;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:186,188:374:99:4428,0,4536:104,82,95,93
chr1	246670626	.	A	AGGGGC	1885.75	PASS	AC=1;AF=0.849;AN=2;DP=5994;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,43:117:99:1557,0,2933:22,52,10,33
chr1	246670709	.	A	G	507.33	PASS	AC=1;AF=0.5;AN=2;DP=172;FractionInformativeReads=1;MQ=60;set=variant18-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,37:57:99:1024,0,438:7,13,13,24
chr1	246711788	.	A	T	120.32	PASS	AC=1;AF=0.5;AN=2;DP=42;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:153,0,545:11,3,4,3
chr1	246711789	.	T	A	714.06	PASS	AC=1;AF=0.686;AN=2;DP=888;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:221,0,539:12,3,6,3
chr1	246711816	.	GA	G	2257.18	PASS	AC=1;AF=0.645;AN=2;DP=1323;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:638,0,500:12,8,16,8
chr1	246712033	.	A	G	873.97	PASS	AC=2;AF=1;AN=2;DP=788;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.552;ReadPosRankSum=1.552;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:485,36,0:0,0,1,11
chr1	246714426	.	A	G	198.1	PASS	AC=1;AF=0.591;AN=2;DP=92;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant13-variant27-variant29-variant32-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:120,0,34:1,0,2,1
chr1	246714587	.	G	A	1836.49	PASS	AC=2;AF=0.656;AN=2;DP=1709;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1391,150,0:0,0,25,25
chr1	246714631	.	T	A	1816.77	PASS	AC=2;AF=0.656;AN=2;DP=1256;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1510,102,0:0,0,14,20
chr1	246714632	.	G	A	1816.77	PASS	AC=2;AF=0.656;AN=2;DP=1236;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1510,102,0:0,0,13,20
chr1	246714636	.	T	A	1852.79	PASS	AC=2;AF=0.656;AN=2;DP=1173;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1440,96,0:0,0,13,19
chr1	246714728	.	G	A	293.05	PASS	AC=1;AF=0.854;AN=2;DP=334;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:18:275,0,18:1,0,2,5
chr1	246714740	.	C	T	100.97	PASS	AC=1;AF=0.656;AN=2;DP=115;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant8-variant9-variant14-variant18-variant19-variant21-variant22-variant29-variant30-variant31-variant33-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:148,0,115:1,3,2,2
chr1	246720174	.	A	G	328.54	PASS	AC=2;AF=0.989;AN=2;DP=306;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.044;ReadPosRankSum=1.393;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:520,39,0:0,0,1,12
chr1	246720798	.	G	A	1453.14	PASS	AC=2;AF=1;AN=2;DP=2334;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1101,119,0:0,0,23,17
chr1	246727558	.	G	T	1281.74	PASS	AC=2;AF=1;AN=2;DP=1604;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1402,137,0:0,0,30,16
chr1	246730090	.	G	C	1157.06	PASS	AC=1;AF=0.966;AN=2;DP=1889;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,25:44:99:737,0,527:5,14,6,19
chr1	246755002	.	C	T	2102.04	PASS	AC=1;AF=0.5;AN=2;DP=163;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.391;QD=12.9;ReadPosRankSum=2.292;SOR=0.695;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:86,77:163:99:2130,0,2520:28,58,25,52
chr1	246755124	.	T	C	2094.74	PASS	AC=2;AF=0.909;AN=2;DP=3628;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2543,239,0:0,0,38,42
chr1	246805435	.	G	T	96.39	PASS	AC=2;AF=0.679;AN=2;DP=105;FractionInformativeReads=1;set=variant5-variant8-variant9-variant10-variant13-variant14-variant17-variant19-variant20-variant21-variant27-variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:274,24,0:0,0,1,7
chr1	246829742	.	T	C	56.94	PASS	AC=1;AF=0.645;AN=2;DP=877;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:260,0,184:1,4,5,5
chr1	246830017	.	C	T	681.57	PASS	AC=1;AF=0.5;AN=2;DP=110;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,37:60:99:1036,0,608:16,7,24,13
chr1	246830293	.	A	G	4289.46	PASS	AC=1;AF=0.641;AN=2;DP=14095;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,177:329:99:4499,0,3758:61,91,79,98
chr1	246830488	.	T	C	3043.45	PASS	AC=1;AF=0.641;AN=2;DP=9533;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,104:205:99:2816,0,2717:51,50,59,45
chr1	246930648	.	C	G	2087.97	PASS	AC=1;AF=0.5;AN=2;DP=204;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.081;QD=10.24;ReadPosRankSum=1.326;SOR=0.666;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:112,92:204:99:2116,0,2843:54,58,45,47
chr1	246931057	.	A	G	1754.3	PASS	AC=1;AF=0.545;AN=2;DP=3194;MQ=60;set=variant2-variant3-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant25-variant26-variant27-variant29-variant30-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,62:139:99:1767,0,2158:53,24,45,17
chr1	246939856	.	G	A	815.43	PASS	AC=1;AF=0.655;AN=2;DP=3212;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,50:95:99:1234,0,1079:24,21,32,18
chr1	246940135	.	A	C	1472.13	PASS	AC=1;AF=0.5;AN=2;DP=105;FS=2.506;FractionInformativeReads=0.99;MQ=60;MQRankSum=-1.823;QD=14.02;ReadPosRankSum=2.527;SOR=0.881;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1500,0,1448:27,28,27,22
chr1	246943547	.	A	C	201.65	PASS	AC=2;AF=0.565;AN=2;DP=694;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant25-variant26-variant27-variant29-variant30-variant35-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1126,93,0:0,0,25,6
chr1	247004031	.	T	C	254.83	PASS	AC=1;AF=0.5;AN=2;DP=244;FractionInformativeReads=1;set=variant4-variant6-variant8-variant10-variant12-variant15-variant18-variant20-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:199,0,193:4,3,6,0
chr1	247006160	.	G	T	1128.62	PASS	AC=2;AF=0.692;AN=2;DP=1684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1438,141,0:0,0,18,29
chr1	247014109	.	G	A	1574.8	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=4.075;FractionInformativeReads=1;MQ=32.87;MQRankSum=-1.389;QD=11.67;ReadPosRankSum=1.177;SOR=0.822;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,69:135:99:1603,0,1563:35,31,31,38
chr1	247016787	.	G	A	1361.78	PASS	AC=2;AF=0.684;AN=2;DP=2016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1184,111,0:0,0,11,26
chr1	247019277	.	T	C	728.59	PASS	AC=2;AF=0.529;AN=2;DP=650;MQ=60;set=variant4-variant6-variant8-variant9-variant10-variant12-variant15-variant18-variant20-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1104,102,0:0,0,12,22
chr1	247021085	.	G	C	564.92	PASS	AC=2;AF=0.531;AN=2;DP=748;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant8-variant9-variant10-variant12-variant15-variant18-variant20-variant32-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1167,120,0:0,0,20,20
chr1	247021266	.	C	CTTCT,CTTCTT	157.5	PASS	AC=2,0;AF=0.97,0.03;AN=2;DP=198;FS=0;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	1/1:4:12:0,0,0,4
chr1	247024691	.	T	C	248.3	PASS	AC=2;AF=0.571;AN=2;DP=111;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant9-variant10-variant12-variant15-variant18-variant20-variant32-variant35-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:280,27,0:0,0,3,6
chr1	247027204	.	C	T	589.42	PASS	AC=2;AF=0.531;AN=2;DP=995;MQ=60;set=variant4-variant6-variant8-variant9-variant10-variant12-variant15-variant18-variant20-variant32-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2074,204,0:0,0,28,40
chr1	247031203	.	CCA	C,CCACACA	75.79	PASS	AC=0,1;AF=0.5,0.167;AN=2;DP=36;set=variant6-variant9-variant41	GT:DP:GQ:SB	0/2:12:99:0,5,0,7
chr1	247031204	.	CACACA	CCACA,C,CCA	268.01	PASS	AC=1,0,0;AF=0.475,0.075,0.05;AN=2;DP=328;set=variant-variant3-variant5-variant10-variant11-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:15:99:0,10,0,5
chr1	247031207	.	A	C	106.35	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=0;set=variant10-variant32-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:129,0,396:0,10,0,5
chr1	247031237	.	C	G	587.07	PASS	AC=2;AF=0.717;AN=2;DP=256;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:343,24,0:0,0,0,8
chr1	247048834	.	T	C	172	PASS	AC=2;AF=0.691;AN=2;DP=464;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:400,33,0:0,0,9,2
chr1	247054530	.	T	C	34.26	PASS	AC=2;AF=0.7;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:261,21,0:0,0,1,6
chr1	247067139	.	CAA	CA,CAAA,C	285.51	PASS	AC=1,0,0;AF=0.553,0.026,0.013;AN=2;DP=1090;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:28:8:3,1,22,2
chr1	247067492	.	AG	A	172.1	PASS	AC=2;AF=0.667;AN=2;DP=143;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant10-variant11-variant23-variant27-variant29-variant32-variant33-variant35-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:147,12,0:0,0,1,3
chr1	247109014	.	G	C	1134.77	PASS	AC=1;AF=0.639;AN=2;DP=1194;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:280,0,235:7,1,8,5
chr1	247109168	.	G	A	1921.13	PASS	AC=1;AF=0.652;AN=2;DP=3580;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant14-variant16-variant19-variant21-variant22-variant23-variant24-variant30-variant31-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,49:123:99:1109,0,1862:44,30,26,23
chr1	247109267	.	A	C	5224.22	PASS	AC=1;AF=0.635;AN=2;DP=4646;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,29:86:99:956,0,4255:24,33,10,19
chr1	247109291	.	CG	C	4167.91	PASS	AC=1;AF=0.569;AN=2;DP=2620;set=variant2-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,25:64:99:954,0,3983:14,25,8,17
chr1	247109296	.	A	G	3951.13	PASS	AC=1;AF=0.569;AN=2;DP=2452;FractionInformativeReads=1;set=variant2-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,23:63:99:855,0,3918:14,26,7,16
chr1	247129945	.	A	G	106.77	PASS	AC=2;AF=0.691;AN=2;DP=305;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,5,0
chr1	247130577	.	C	A	144.9	PASS	AC=1;AF=0.583;AN=2;DP=256;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant12-variant14-variant15-variant19-variant21-variant24-variant28-variant29-variant30-variant31-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:291,0,386:10,2,6,4
chr1	247130786	.	G	A	879.83	PASS	AC=1;AF=0.5;AN=2;DP=93;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.226;QD=9.46;ReadPosRankSum=1.841;SOR=0.771;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,39:93:99:908,0,1307:26,28,18,21
chr1	247149556	.	G	A	85.71	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.55;QD=12.24;ReadPosRankSum=-1.754;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,137:4,0,3,0
chr1	247149918	.	G	A	6857.75	PASS	AC=1;AF=0.716;AN=2;DP=7190;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,83:196:99:2153,0,2973:57,56,40,43
chr1	247151035	.	T	G	1581.07	PASS	AC=1;AF=0.5;AN=2;DP=1014;MQ=60;set=variant5-variant8-variant19-variant28-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:67,51:118:99:1225,0,1726:28,39,27,24
chr1	247151557	.	A	G	1561.95	PASS	AC=1;AF=0.689;AN=2;DP=1593;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,24:37:99:669,0,396:3,10,8,16
chr1	247162658	.	C	T	12344.9	PASS	AC=1;AF=0.864;AN=2;DP=16951;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:180,166:346:99:3967,0,4505:74,106,75,91
chr1	247171390	.	C	G	1300.34	PASS	AC=1;AF=0.5;AN=2;DP=343;FractionInformativeReads=1;MQ=60;set=variant9-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,34:86:99:893,0,1455:23,29,9,25
chr1	247200173	.	TAC	TACACACACACACAC,TACACACACAC,TACACACACACACACAC,TACACACACACAC,TACACAC,TACACACAC,TACACACACACACACACAC,TACAC,TACACACACACACACACACAC,T,TAGAC	773.12	PASS	AC=0,1,0,0,0,0,0,0,0,0,1;AF=0.25,0.079,0.079,0.145,0.013,0.053,0.053,0.053,0.013,0.013,0.013;AN=2;DP=1435;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	11/2:26:99:0,0,20,6
chr1	247200207	.	T	C	1022.91	PASS	AC=1;AF=0.525;AN=2;DP=947;set=variant4-variant7-variant8-variant9-variant12-variant16-variant18-variant19-variant21-variant23-variant24-variant28-variant29-variant31-variant32-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:924,0,791:16,6,19,7
chr1	247200491	.	A	G	4260.92	PASS	AC=1;AF=0.5;AN=2;DP=1121;FractionInformativeReads=1;MQ=60;set=variant9-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:125,119:244:99:3120,0,3111:53,72,54,65
chr1	247202032	.	G	T	147.99	PASS	AC=1;AF=0.643;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant21-variant23-variant24-variant25-variant26-variant31-variant33-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:83:118,0,83:2,1,3,1
chr1	247241742	.	C	G	410.73	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=2.176;FractionInformativeReads=1;MQ=60;MQRankSum=1.25;QD=14.16;ReadPosRankSum=-1.995;SOR=1.493;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:439,0,498:13,3,12,1
chr1	247241850	.	G	C	2519.77	PASS	AC=1;AF=0.543;AN=2;DP=4394;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:83,105:188:99:2700,0,1904:49,34,65,40
chr1	247242032	.	C	T	1472.54	PASS	AC=1;AF=0.5;AN=2;DP=2642;MQ=60;set=variant4-variant7-variant8-variant9-variant12-variant16-variant18-variant19-variant23-variant24-variant28-variant31-variant32-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:67,63:130:99:1719,0,1740:27,40,20,43
chr1	247267274	.	C	A	623.05	PASS	AC=1;AF=0.543;AN=2;DP=1410;MQ=60;set=variant4-variant7-variant8-variant9-variant12-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant28-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,21:65:99:578,0,1185:25,19,11,10
chr1	247267668	.	G	T	1810.85	PASS	AC=1;AF=0.63;AN=2;DP=2845;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,65:138:99:1532,0,1943:28,45,22,43
chr1	247274899	.	A	G	327.42	PASS	AC=2;AF=0.7;AN=2;DP=534;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant23-variant24-variant28-variant31-variant32-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:652,66,0:0,0,10,12
chr1	247285224	.	A	G	1685.96	PASS	AC=2;AF=0.643;AN=2;DP=1892;set=variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant16-variant17-variant18-variant21-variant23-variant24-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3500,279,0:0,0,77,16
chr1	247285239	.	T	C	2029.42	PASS	AC=1;AF=0.5;AN=2;DP=128;FS=0.815;FractionInformativeReads=1;MQ=60;MQRankSum=-0.884;QD=15.85;ReadPosRankSum=1.681;SOR=0.873;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,66:128:99:2058,0,1813:48,14,53,13
chr1	247285395	.	T	A	4729.04	PASS	AC=1;AF=0.605;AN=2;DP=9979;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant12-variant16-variant17-variant18-variant21-variant23-variant24-variant31-variant32-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:260,230:490:99:5289,0,6631:129,131,111,119
chr1	247285681	.	T	C	619.89	PASS	AC=2;AF=0.658;AN=2;DP=1170;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant12-variant16-variant17-variant18-variant21-variant23-variant24-variant31-variant32-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1951,199,0:0,0,29,38
chr1	247286034	.	T	C	312.05	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=3.442;FractionInformativeReads=1;MQ=60;MQRankSum=-0.386;QD=12;ReadPosRankSum=2.7;SOR=1.445;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:340,0,409:7,7,8,4
chr1	247286418	.	CATAAG	C	4902.72	PASS	AC=1;AF=0.5;AN=2;DP=269;FS=0;FractionInformativeReads=0.978;MQ=60;MQRankSum=1.879;QD=18.23;ReadPosRankSum=1.074;SOR=0.68;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:135,128:263:99:4940,0,6281:66,69,63,65
chr1	247287256	.	T	A	254.2	PASS	AC=1;AF=0.5;AN=2;DP=1743;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant16-variant17-variant18-variant21-variant23-variant24-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,19:76:99:460,0,1846:21,36,5,14
chr1	247287260	.	A	G	447.46	PASS	AC=1;AF=0.5;AN=2;DP=1985;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant16-variant17-variant18-variant21-filterInvariant23-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,26:73:99:507,0,2002:13,34,10,16
chr1	247287269	.	T	C	1185.32	PASS	AC=1;AF=0.615;AN=2;DP=1837;FractionInformativeReads=1;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant16-variant17-variant18-variant21-variant23-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,42:70:99:1568,0,693:9,19,13,29
chr1	247287276	.	A	T	469.92	PASS	AC=1;AF=0.5;AN=2;DP=413;set=variant2-variant18-filterInvariant21-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,24:68:99:529,0,1649:13,31,8,16
chr1	247319111	.	T	C	43.71	PASS	AC=2;AF=0.6;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant32-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:132,9,0:0,0,3,0
chr1	247319162	.	CA	C,CAA,CAAA	31.1	PASS	AC=0,0,2;AF=0.107,0.321,0.143;AN=2;DP=167;set=variant-variant2-variant3-variant5-variant8-variant9-variant10-variant13-variant16-variant24-variant27-variant32-variant37-variant41	GT:DP:GQ:SB	3/3:2:12:0,0,2,0
chr1	247319190	.	AT	A	145.58	PASS	AC=2;AF=0.563;AN=2;DP=155;set=variant2-variant17-variant21-variant32-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,17:18:27:445,27,0:1,0,11,6
chr1	247319766	.	A	T	1655.74	PASS	AC=1;AF=0.5;AN=2;DP=116;FS=1.6;FractionInformativeReads=1;MQ=60;MQRankSum=-1.364;QD=14.27;ReadPosRankSum=1.995;SOR=0.894;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,54:116:99:1684,0,1830:21,41,16,38
chr1	247319774	.	GA	G	1235.2	PASS	AC=2;AF=0.563;AN=2;DP=832;MQ=60;set=variant2-variant17-variant21-variant32-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:4049,310,0:0,0,34,67
chr1	247319830	.	G	A	1179.64	PASS	AC=2;AF=0.563;AN=2;DP=659;FractionInformativeReads=1;set=variant2-variant17-variant21-variant32-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2621,225,0:0,0,33,42
chr1	247320258	.	A	G	1202.98	PASS	AC=2;AF=0.563;AN=2;DP=887;FractionInformativeReads=1;MQ=60;set=variant2-variant17-variant21-variant32-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3336,315,0:0,0,52,53
chr1	247320868	.	G	A	2826	PASS	AC=2;AF=0.563;AN=2;DP=1707;FractionInformativeReads=1;MQ=60;set=variant2-variant17-variant21-variant32-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:6490,587,0:0,0,105,91
chr1	247321221	.	C	T	803.94	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.185;QD=22.33;ReadPosRankSum=0.453;SOR=0.602;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,24:36:99:832,0,380:2,10,5,19
chr1	247321269	.	TGGTC	T	120.25	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=6.56;FractionInformativeReads=1;MQ=60;MQRankSum=-0.933;QD=8.59;ReadPosRankSum=0.933;SOR=3.258;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:158,0,333:4,5,0,5
chr1	247322130	.	C	T	123.17	PASS	AC=2;AF=0.583;AN=2;DP=43;FS=0;MQ=60;set=variant17-variant21-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr1	247322298	.	G	T	972.68	PASS	AC=2;AF=0.673;AN=2;DP=1193;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant16-variant17-variant18-variant21-variant23-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:709,69,0:0,0,11,12
chr1	247323195	.	T	C	994.51	PASS	AC=2;AF=0.563;AN=2;DP=824;MQ=60;set=variant2-variant17-variant21-variant32-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,87:88:99:2675,222,0:0,1,35,52
chr1	247323260	.	C	A	1200.73	PASS	AC=2;AF=0.68;AN=2;DP=1015;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant16-variant17-variant18-variant21-variant23-variant24-variant26-variant28-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,43:44:50:1575,50,0:0,1,12,31
chr1	247323278	.	G	GTTT,GTT,GT,GTTTT	93.46	PASS	AC=0,0,0,2;AF=0.083,0.25,0.083,0.167;AN=2;DP=153;set=variant2-variant17-variant21-variant32-variant34-variant41	GT:DP:GQ:SB	4/4:29:17:0,1,6,22
chr1	247323281	.	C	T	241.1	PASS	AC=1;AF=0.5;AN=2;DP=95;set=variant17-variant21-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,14:15:22:751,0,22:0,1,4,10
chr1	247337159	.	A	G	2145.02	PASS	AC=1;AF=0.5;AN=2;DP=2264;FractionInformativeReads=1;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant16-variant17-variant21-variant23-variant24-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,47:108:99:1157,0,1397:32,29,24,23
chr1	247365152	.	T	C	240.53	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:99:119,0,426:10,2,3,1
chr1	247365240	.	T	C	566.73	PASS	AC=1;AF=0.5;AN=2;DP=126;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,31:78:99:761,0,1125:28,19,22,9
chr1	247365285	.	GGA	G	1003.98	PASS	AC=1;AF=0.5;AN=2;DP=165;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:65,41:106:99:1526,0,2565:36,29,24,17
chr1	247365430	.	A	G	841.02	PASS	AC=2;AF=0.688;AN=2;DP=1813;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1290,114,0:0,0,10,28
chr1	247419509	.	T	C	3167.1	PASS	AC=1;AF=0.907;AN=2;DP=4561;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,35:78:99:978,0,1075:24,19,23,12
chr1	247419664	.	C	T	4348	PASS	AC=1;AF=0.907;AN=2;DP=4913;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,47:95:99:1336,0,1159:25,23,21,26
chr1	247460660	.	T	C	231.01	PASS	AC=1;AF=0.782;AN=2;DP=494;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:111,0,187:5,1,3,2
chr1	247460727	.	A	G	669.59	PASS	AC=1;AF=0.565;AN=2;DP=731;MQ=60;set=variant3-variant8-variant10-variant11-variant12-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,23:34:99:614,0,255:8,3,15,8
chr1	247462048	.	A	G	1335.34	PASS	AC=1;AF=0.762;AN=2;DP=2875;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:607,0,887:18,16,15,9
chr1	247462273	.	A	G	677	PASS	AC=1;AF=0.762;AN=2;DP=2004;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:471,0,661:10,15,9,11
chr1	247473889	.	C	T	316.24	PASS	AC=1;AF=0.643;AN=2;DP=404;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:352,0,299:1,8,3,9
chr1	247485932	.	A	G	1718.71	PASS	AC=1;AF=0.977;AN=2;DP=1650;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:462,0,324:9,3,12,6
chr1	247486213	.	G	A	1178.29	PASS	AC=1;AF=0.641;AN=2;DP=1158;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:492,0,404:6,10,7,13
chr1	247486421	.	G	C	1511.19	PASS	AC=1;AF=0.78;AN=2;DP=1388;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:434,0,240:6,3,10,5
chr1	247581570	.	C	T	61.77	PASS	AC=2;AF=1;AN=2;DP=2;FS=0;FractionInformativeReads=1;MQ=60;QD=30.88;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr1	247582446	.	TTATA	T,TTA	88.89	PASS	AC=0,2;AF=0.167,0.583;AN=2;DP=98;FS=0;MQ=60;set=variant15-variant25-variant37-variant38-variant39-variant41	GT:DP:GQ:SB	2/2:5:15:0,0,0,5
chr1	247586336	.	T	C	320.4	PASS	AC=1;AF=0.54;AN=2;DP=381;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:161,0,182:4,1,5,1
chr1	247587531	.	A	G	3041.45	PASS	AC=1;AF=0.943;AN=2;DP=7491;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:88,79:167:99:2105,0,2172:45,43,39,40
chr1	247597329	.	C	T	55.3	PASS	AC=1;AF=0.932;AN=2;DP=259;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:105,0,2722:7,0,2,1
chr1	247597364	.	G	GAT	451.16	PASS	AC=1;AF=0.767;AN=2;DP=468;set=variant-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:410,0,3384:12,3,5,1
chr1	247597365	.	G	A,GTGTTCTGAGGCCTTCTCTATTCCAGAGCTCTCTGGTCAGA	983.6	PASS	AC=0,1;AF=0.393,0.548;AN=2;DP=700;set=variant3-variant4-variant7-variant8-variant9-variant2-variant-variant10-variant6-variant5-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:22:99:12,4,5,1
chr1	247607642	.	C	T	373.26	PASS	AC=1;AF=0.625;AN=2;DP=1379;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:439,0,688:6,16,5,10
chr1	247611570	.	CTTT	CT,CTT,C,CTTTT,CTTTTTT	275.48	PASS	AC=2,0,0,0,0;AF=0.328,0.172,0.047,0.016,0.016;AN=2;DP=1631;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:38:99:0,0,21,17
chr1	247611981	.	TC	T	2224.78	PASS	AC=1;AF=0.5;AN=2;DP=587;MQ=60;set=variant28-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,60:142:99:1804,0,2634:47,35,35,25
chr1	247612036	.	G	C	3069.37	PASS	AC=1;AF=0.639;AN=2;DP=7439;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:100,68:168:99:1758,0,2578:50,50,37,31
chr1	247612151	.	C	CT	5709.29	PASS	AC=1;AF=0.688;AN=2;DP=8115;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,67:141:99:1660,0,1889:31,43,27,40
chr1	247612295	.	C	T	1632.69	PASS	AC=1;AF=0.671;AN=2;DP=2416;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,32:62:99:685,0,800:9,21,14,18
chr1	247614194	.	A	G	147.15	PASS	AC=1;AF=0.5;AN=2;DP=469;MQ=60;set=variant2-variant4-variant6-variant8-variant10-variant11-variant19-variant20-variant22-variant23-variant26-variant30-variant33-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:361,0,127:4,3,8,6
chr1	247614386	.	T	C	793.91	PASS	AC=1;AF=0.5;AN=2;DP=1268;MQ=60;set=variant2-variant4-variant6-variant8-variant10-variant11-variant19-variant20-variant22-variant23-variant26-variant30-variant33-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,29:66:99:625,0,902:21,16,16,13
chr1	247614407	.	G	A	888.37	PASS	AC=1;AF=0.5;AN=2;DP=1439;MQ=60;set=variant2-variant4-variant6-variant8-variant10-variant11-variant19-variant20-variant22-variant23-variant26-variant30-variant33-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:873,0,892:19,16,21,16
chr1	247614553	.	C	T	1269.66	PASS	AC=1;AF=0.5;AN=2;DP=2002;MQ=60;set=variant2-variant4-variant6-variant8-variant10-variant11-variant19-variant20-variant22-variant23-variant26-variant30-variant33-variant34-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,67:108:99:1714,0,1032:20,21,36,31
chr1	247614693	.	C	T	1785.79	PASS	AC=1;AF=0.977;AN=2;DP=5367;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:57,33:90:99:840,0,1536:26,31,15,18
chr1	247615340	.	C	T	851.57	PASS	AC=2;AF=0.6;AN=2;DP=693;MQ=60;set=variant8-variant11-variant18-variant19-variant26-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2070,174,0:0,0,14,44
chr1	247615358	.	C	G	698.93	PASS	AC=2;AF=0.6;AN=2;DP=572;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant18-variant19-variant26-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1620,135,0:0,0,13,32
chr1	247615470	.	T	C	232.49	PASS	AC=1;AF=0.864;AN=2;DP=590;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:229,0,137:1,4,1,5
chr1	247654493	.	G	T	1920.23	PASS	AC=1;AF=0.5;AN=2;DP=169;FS=0;FractionInformativeReads=0.994;MQ=60;MQRankSum=-0.999;QD=11.36;ReadPosRankSum=-0.265;SOR=0.697;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:88,80:168:99:1948,0,2142:45,43,41,39
chr1	247655275	.	T	C	1972.7	PASS	AC=1;AF=0.54;AN=2;DP=3364;MQ=60;set=variant3-variant5-variant7-variant9-variant11-variant12-variant13-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant29-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,55:127:99:1404,0,1806:37,35,28,27
chr1	247693351	.	G	A	231.39	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=2.171;FractionInformativeReads=1;MQ=60;MQRankSum=0.705;QD=14.46;ReadPosRankSum=0.054;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:260,0,100:3,3,7,3
chr1	247693782	.	C	T	832.89	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.306;QD=11.9;ReadPosRankSum=2.33;SOR=0.783;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,37:70:99:861,0,748:15,18,16,21
chr1	247693966	.	T	C	788.67	PASS	AC=1;AF=0.989;AN=2;DP=2050;MQ=60;MQRankSum=1.439;ReadPosRankSum=-0.558;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:418,0,610:14,7,8,9
chr1	247694550	.	C	G	2753.15	PASS	AC=1;AF=0.768;AN=2;DP=8156;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,82:195:99:2029,0,2803:64,49,44,38
chr1	247695612	.	G	A	2852.79	PASS	AC=2;AF=1;AN=2;DP=5751;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3311,313,0:0,0,51,54
chr1	247695756	.	T	C	2822.29	PASS	AC=1;AF=0.989;AN=2;DP=5096;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:50,67:117:99:1527,0,1210:21,29,33,34
chr1	247695914	.	T	G	238.66	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=3.233;FractionInformativeReads=1;MQ=60;MQRankSum=-1.059;QD=14.92;ReadPosRankSum=-0.635;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:267,0,282:2,7,0,7
chr1	247712303	.	T	C	485.98	PASS	AC=2;AF=0.65;AN=2;DP=2300;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1833,173,0:0,0,36,22
chr1	247719514	.	A	T	457.3	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=1.824;FractionInformativeReads=1;MQ=60;MQRankSum=0.167;QD=19.88;ReadPosRankSum=0.702;SOR=1.27;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:486,0,163:4,3,11,5
chr1	247752019	.	G	C	1988.44	PASS	AC=1;AF=0.75;AN=2;DP=6711;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,84:157:99:2268,0,1941:40,33,37,47
chr1	247752161	.	T	C	1407.31	PASS	AC=1;AF=0.645;AN=2;DP=5391;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:95,93:188:99:2439,0,2431:42,53,44,49
chr1	247752367	.	A	G	3915.18	PASS	AC=2;AF=0.744;AN=2;DP=5697;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3880,368,0:0,0,60,63
chr1	247769752	.	A	G	3085.3	PASS	AC=2;AF=0.75;AN=2;DP=7949;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,199:199:99:6102,595,0:0,0,103,96
chr1	247835352	.	C	T	766.45	PASS	AC=2;AF=0.86;AN=2;DP=1368;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1303,111,0:0,0,27,10
chr1	247835674	.	G	A	1239.59	PASS	AC=2;AF=0.595;AN=2;DP=3380;MQ=60;set=variant-variant5-variant7-variant9-variant11-variant13-variant14-variant16-variant18-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4383,401,0:0,0,74,60
chr1	247835908	.	T	A	910.31	PASS	AC=2;AF=0.595;AN=2;DP=2943;MQ=60;set=variant-variant5-variant7-variant9-variant11-variant13-variant14-variant16-variant18-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3976,369,0:0,0,54,69
chr1	247836008	.	G	A	964.76	PASS	AC=2;AF=0.595;AN=2;DP=2458;MQ=60;set=variant-variant5-variant7-variant9-variant11-variant13-variant14-variant16-variant18-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3115,305,0:0,0,53,49
chr1	247836207	.	T	A	1493	PASS	AC=2;AF=0.595;AN=2;DP=2558;MQ=60;set=variant-variant5-variant7-variant9-variant11-variant13-variant14-variant16-variant18-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant35-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4300,402,0:0,0,68,66
chr1	247875415	.	A	G	988.97	PASS	AC=2;AF=0.56;AN=2;DP=4639;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant11-variant14-variant16-variant18-variant21-variant22-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4786,441,0:0,0,71,76
chr1	247875583	.	G	C	571.08	PASS	AC=1;AF=0.542;AN=2;DP=1137;MQ=60;set=variant-variant3-variant9-variant14-variant18-variant27-variant28-variant29-variant33-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,43:97:99:1004,0,1579:27,27,17,26
chr1	247875608	.	C	G	584.3	PASS	AC=2;AF=0.563;AN=2;DP=2168;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant11-variant14-variant16-variant18-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2808,264,0:0,0,38,50
chr1	247875623	.	G	A	859.17	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.748;QD=10.88;ReadPosRankSum=1.956;SOR=0.703;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,34:79:99:887,0,1273:20,25,15,19
chr1	247876020	.	A	G	909.52	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=5.667;FractionInformativeReads=1;MQ=60;MQRankSum=-0.613;QD=10.96;ReadPosRankSum=0.346;SOR=1.308;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,35:83:99:938,0,1271:24,24,13,22
chr1	247886505	.	G	T	1695.1	PASS	AC=1;AF=0.5;AN=2;DP=140;FS=0.634;FractionInformativeReads=1;MQ=60;MQRankSum=-0.086;QD=12.11;ReadPosRankSum=0.879;SOR=0.605;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,74:140:99:1723,0,1653:27,39,32,42
chr1	247886615	.	G	A	971.29	PASS	AC=1;AF=0.563;AN=2;DP=664;FractionInformativeReads=1;MQ=60;set=variant9-variant14-variant27-variant28-variant29-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,42:92:99:1025,0,1339:27,23,20,22
chr1	247902408	.	G	T	1478.82	PASS	AC=1;AF=0.5;AN=2;DP=139;FS=3.125;FractionInformativeReads=1;MQ=60;MQRankSum=0.357;QD=10.64;ReadPosRankSum=-3.018;SOR=0.475;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,58:139:99:1507,0,2234:30,51,25,33
chr1	247921100	.	T	G	2540.34	PASS	AC=2;AF=0.849;AN=2;DP=4607;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2692,240,0:0,0,36,44
chr1	247921352	.	C	T	1582.83	PASS	AC=2;AF=0.93;AN=2;DP=3783;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2154,201,0:0,0,35,32
chr1	247921509	.	G	A	1037.56	PASS	AC=1;AF=0.5;AN=2;DP=88;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.259;QD=11.79;ReadPosRankSum=1.74;SOR=0.641;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,41:88:99:1066,0,1244:27,20,23,18
chr1	247921717	.	C	A	784.76	PASS	AC=2;AF=0.93;AN=2;DP=2017;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1493,144,0:0,0,17,31
chr1	247921789	.	AGT	AGTGT,AGTGTGT,A,AGTGTGTGT	198.31	PASS	AC=1,0,0,0;AF=0.434,0.145,0.066,0.013;AN=2;DP=817;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:8:68:2,3,1,2
chr1	247921819	.	T	TGTGC	208.79	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=0.889;MQ=59.68;MQRankSum=-1.059;QD=11.6;ReadPosRankSum=0.212;SOR=1.085;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:246,0,203:3,4,3,6
chr1	247921888	.	C	T	620.93	PASS	AC=2;AF=0.989;AN=2;DP=742;FractionInformativeReads=1;MQ=60;MQRankSum=0.376;ReadPosRankSum=0.612;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:378,36,0:0,0,5,7
chr1	247978079	.	T	A	722.68	PASS	AC=1;AF=0.5;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant13-variant19-variant21-variant22-variant30-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:450,0,582:14,6,12,3
chr1	247978319	.	A	G	3434.94	PASS	AC=2;AF=1;AN=2;DP=5641;FS=0;MQ=60;MQRankSum=0.144;ReadPosRankSum=0.52;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4238,405,0:0,0,71,64
chr1	247979061	.	G	A	418.61	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=0;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,19:28:99:609,0,198:3,6,5,14
chr1	248004614	.	G	A	3268.68	PASS	AC=2;AF=0.884;AN=2;DP=5372;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3350,297,0:0,0,55,44
chr1	248004687	.	C	G	2723.26	PASS	AC=2;AF=0.875;AN=2;DP=6328;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4061,393,0:0,0,73,58
chr1	248004775	.	C	T	1653.55	PASS	AC=2;AF=0.875;AN=2;DP=5173;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3239,306,0:0,0,45,58
chr1	248004848	.	G	C	1453.67	PASS	AC=2;AF=0.875;AN=2;DP=3962;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2202,191,0:0,0,28,36
chr1	248004877	.	C	T	1720.27	PASS	AC=2;AF=0.875;AN=2;DP=3743;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2555,180,0:0,0,25,30
chr1	248004884	.	T	C	1661.48	PASS	AC=2;AF=0.966;AN=2;DP=3749;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2677,192,0:0,0,31,33
chr1	248005213	.	G	C	3151.61	PASS	AC=2;AF=0.875;AN=2;DP=4870;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3099,290,0:0,0,41,56
chr1	248020448	.	G	A	1000.87	PASS	AC=2;AF=0.816;AN=2;DP=1058;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:794,69,0:0,0,16,7
chr1	248020556	.	G	C	3414.59	PASS	AC=2;AF=0.795;AN=2;DP=4129;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3366,309,0:0,0,65,38
chr1	248023966	.	C	T	1518.37	PASS	AC=2;AF=0.648;AN=2;DP=1753;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant13-variant18-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1431,135,0:0,0,20,25
chr1	248024073	.	A	C	548.79	PASS	AC=2;AF=0.66;AN=2;DP=471;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant18-variant20-variant21-variant23-variant25-variant26-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:656,60,0:0,0,5,15
chr1	248039245	.	C	T	892.43	PASS	AC=1;AF=0.5;AN=2;DP=241;FractionInformativeReads=1;MQ=60;set=variant28-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,40:87:99:950,0,1156:28,19,23,17
chr1	248039713	.	A	G	3151.37	PASS	AC=1;AF=0.744;AN=2;DP=3888;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:531,0,910:13,18,11,11
chr1	248040218	.	C	T	2001.41	PASS	AC=1;AF=0.5;AN=2;DP=472;FractionInformativeReads=1;MQ=60;set=variant28-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:104,74:178:99:1944,0,2877:38,66,27,47
chr1	248040293	.	T	C	3448.83	PASS	AC=2;AF=1;AN=2;DP=3759;FS=0;MQ=60;MQRankSum=2.226;ReadPosRankSum=-0.528;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2644,210,0:0,0,19,51
chr1	248040519	.	TTAAG	T	3184.17	PASS	AC=1;AF=0.5;AN=2;DP=484;MQ=60;set=variant28-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:84,74:158:99:2834,0,4888:36,48,29,45
chr1	248041182	.	T	G	400.9	PASS	AC=1;AF=0.763;AN=2;DP=743;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:209,0,251:2,6,4,5
chr1	248058755	.	A	G	106.77	PASS	AC=2;AF=0.976;AN=2;DP=253;FS=0;MQ=60;MQRankSum=0.922;ReadPosRankSum=0.922;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr1	248058797	.	T	G	414.76	PASS	AC=2;AF=0.977;AN=2;DP=857;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:684,57,0:0,0,14,5
chr1	248058845	.	A	C	848.32	PASS	AC=2;AF=0.977;AN=2;DP=2134;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1290,116,0:0,0,27,12
chr1	248058879	.	A	T	1590.41	PASS	AC=2;AF=0.977;AN=2;DP=3552;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2079,197,0:0,0,42,24
chr1	248059252	.	C	T	2240.29	PASS	AC=1;AF=0.5;AN=2;DP=302;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:89,63:152:99:1745,0,2443:45,44,37,26
chr1	248060029	.	A	G	975.82	PASS	AC=1;AF=0.966;AN=2;DP=1166;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:295,0,230:1,7,4,8
chr1	248084222	.	T	C	1151.32	PASS	AC=1;AF=0.536;AN=2;DP=366;MQ=60;set=variant-variant5-filterInvariant6-variant7-variant19-variant20-variant23-variant25-variant28-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:270,0,532:13,4,8,1
chr1	248084375	.	C	G	895.58	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=2.833;FractionInformativeReads=1;MQ=59.29;MQRankSum=-0.452;QD=10.29;ReadPosRankSum=-1.314;SOR=1.013;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,36:87:99:924,0,1294:25,26,15,21
chr1	248084404	.	G	C	985.75	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=3.282;FractionInformativeReads=1;MQ=58.56;MQRankSum=0.619;QD=13.14;ReadPosRankSum=-1.824;SOR=1.204;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,28:75:99:1014,0,1889:22,25,10,18
chr1	248084410	.	A	G	1006.01	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=6.41;FractionInformativeReads=1;MQ=58.4;MQRankSum=1.187;QD=13.59;ReadPosRankSum=-2.246;SOR=1.478;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,28:74:99:1034,0,1889:22,24,9,19
chr1	248084411	.	G	C	1006.01	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=8.334;FractionInformativeReads=1;MQ=58.38;MQRankSum=2.919;QD=13.78;ReadPosRankSum=-2.131;SOR=1.645;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,27:73:99:1034,0,1889:22,24,8,19
chr1	248084412	.	T	C	1030.63	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=8.334;FractionInformativeReads=1;MQ=58.38;MQRankSum=0.017;QD=14.12;ReadPosRankSum=-2.52;SOR=1.645;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,27:73:99:1059,0,1844:22,24,8,19
chr1	248084414	.	T	C	988.64	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=6.602;FractionInformativeReads=1;MQ=58.29;MQRankSum=1.379;QD=13.92;ReadPosRankSum=-2.154;SOR=1.493;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,26:71:99:1017,0,1847:21,24,8,18
chr1	248084464	.	T	C	1698.6	PASS	AC=1;AF=0.955;AN=2;DP=2892;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,36:49:99:1233,0,259:4,9,11,25
chr1	248084471	.	A	G	660.67	PASS	AC=1;AF=0.567;AN=2;DP=762;set=variant4-variant9-variant10-variant12-variant13-variant15-variant25-variant28-variant29-filterInvariant30-variant31-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:954,0,617:6,12,4,20
chr1	248084473	.	C	A	660.67	PASS	AC=1;AF=0.577;AN=2;DP=658;FractionInformativeReads=1;set=variant4-variant9-variant10-variant13-variant15-variant28-variant29-filterInvariant30-variant31-variant35-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,24:40:99:954,0,617:5,11,4,20
chr1	248084511	.	T	C	1200.5	PASS	AC=1;AF=0.591;AN=2;DP=647;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant9-variant10-variant13-variant15-variant19-variant20-variant25-variant28-variant29-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:154,0,604:0,16,5,4
chr1	248084980	.	G	T	93.53	PASS	AC=1;AF=0.839;AN=2;DP=180;set=variant2-variant3-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:80:80,0,81:3,0,3,0
chr1	248085027	.	T	C	271.69	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=3.274;FractionInformativeReads=1;MQ=43.68;MQRankSum=0.442;QD=15.09;ReadPosRankSum=-0.177;SOR=2.712;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:300,0,245:7,2,9,0
chr1	248085108	.	C	T	1861.97	PASS	AC=1;AF=0.837;AN=2;DP=3055;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,29:69:99:852,0,1068:26,14,25,4
chr1	248085251	.	G	A	2344.4	PASS	AC=1;AF=0.5;AN=2;DP=330;FractionInformativeReads=1;MQ=60;set=variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,66:132:99:1664,0,1694:29,37,25,41
chr1	248085341	.	T	A	2175.71	PASS	AC=2;AF=0.884;AN=2;DP=2706;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1497,125,0:0,0,9,33
chr1	248112703	.	G	A	2550.11	PASS	AC=1;AF=0.5;AN=2;DP=304;FS=1.467;FractionInformativeReads=0.997;MQ=49.63;MQRankSum=-4.3;QD=8.39;ReadPosRankSum=-2.366;SOR=0.701;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:204,99:303:99:2578,0,5261:99,105,51,48
chr1	248112745	.	G	T	6451.64	PASS	AC=1;AF=0.818;AN=2;DP=9677;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:174,113:287:99:2770,0,5081:80,94,56,57
chr1	248112762	.	T	C	8478.52	PASS	AC=1;AF=0.807;AN=2;DP=9516;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:161,110:271:99:4096,0,6418:74,87,56,54
chr1	248112763	.	G	A	8523.52	PASS	AC=1;AF=0.807;AN=2;DP=9533;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:163,107:270:99:2497,0,6591:74,89,55,52
chr1	248112771	.	C	T	8422.94	PASS	AC=1;AF=0.807;AN=2;DP=9818;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:161,113:274:99:4134,0,6365:74,87,58,55
chr1	248112836	.	A	G	6809.8	PASS	AC=1;AF=0.966;AN=2;DP=12077;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:135,123:258:99:3082,0,3370:60,75,61,62
chr1	248112952	.	C	T	3210.8	PASS	AC=1;AF=0.5;AN=2;DP=203;FS=2.461;FractionInformativeReads=1;MQ=57.03;MQRankSum=-4.329;QD=15.82;ReadPosRankSum=1.302;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:117,86:203:99:3239,0,4560:53,64,35,51
chr1	248112953	.	G	A	3210.8	PASS	AC=1;AF=0.5;AN=2;DP=197;FS=2.482;FractionInformativeReads=1;MQ=56.94;MQRankSum=-2.895;QD=16.3;ReadPosRankSum=1.568;SOR=0.88;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:112,85:197:99:3239,0,4560:51,61,35,50
chr1	248113026	.	T	A	3810.96	PASS	AC=1;AF=0.966;AN=2;DP=7734;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:80,45:125:99:1291,0,2136:31,49,18,27
chr1	248113040	.	A	G	3959.03	PASS	AC=2;AF=1;AN=2;DP=7366;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:6,113:119:99:3693,208,0:3,3,41,72
chr1	248113206	.	C	G	552.37	PASS	AC=1;AF=0.966;AN=2;DP=1508;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:348,0,456:5,11,4,10
chr1	248128590	.	G	A	2655.58	PASS	AC=1;AF=0.5;AN=2;DP=240;FS=2.163;FractionInformativeReads=1;MQ=60;MQRankSum=-0.959;QD=11.06;ReadPosRankSum=-1.879;SOR=0.743;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:127,113:240:99:2684,0,3143:62,65,59,54
chr1	248128725	.	G	A	2342.42	PASS	AC=1;AF=0.5;AN=2;DP=189;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.008;QD=12.39;ReadPosRankSum=1.941;SOR=0.715;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:100,89:189:99:2371,0,2568:50,50,44,45
chr1	248128929	.	G	A	4730.35	PASS	AC=1;AF=0.595;AN=2;DP=2671;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant13-variant15-variant19-variant20-variant23-variant25-variant29-variant30-variant31-variant34-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,53:119:99:1406,0,2009:28,38,24,29
chr1	248128981	.	G	A	1380.45	PASS	AC=1;AF=0.5;AN=2;DP=117;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.866;QD=11.8;ReadPosRankSum=-1.586;SOR=0.732;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,51:117:99:1409,0,1873:33,33,25,26
chr1	248129078	.	A	G	1618.44	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=0.647;FractionInformativeReads=0.992;MQ=60;MQRankSum=0.143;QD=12.17;ReadPosRankSum=-1.596;SOR=0.588;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,64:132:99:1647,0,1702:31,37,31,33
chr1	248129173	.	G	A	1322.08	PASS	AC=1;AF=0.5;AN=2;DP=111;FS=0.707;FractionInformativeReads=1;MQ=60;MQRankSum=-0.411;QD=11.91;ReadPosRankSum=-1.394;SOR=0.672;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,51:111:99:1350,0,1609:29,31,26,25
chr1	248129195	.	C	T	1216.63	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=2.473;FractionInformativeReads=1;MQ=60;MQRankSum=2.32;QD=11.06;ReadPosRankSum=-0.765;SOR=0.758;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,50:110:99:1245,0,1632:28,32,27,23
chr1	248129302	.	A	G	952.94	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=2.74;FractionInformativeReads=1;MQ=60;MQRankSum=-1.854;QD=10.14;ReadPosRankSum=-0.141;SOR=0.621;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,40:94:99:981,0,1686:24,30,21,19
chr1	248129415	.	TTG	T	2359.55	PASS	AC=1;AF=0.5;AN=2;DP=132;FS=0;FractionInformativeReads=0.985;MQ=60;MQRankSum=-1.331;QD=17.88;ReadPosRankSum=1.932;SOR=0.699;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,62:130:99:2397,0,2668:33,35,30,32
chr1	248129501	.	G	A	1876.31	PASS	AC=1;AF=0.5;AN=2;DP=147;FS=0.609;FractionInformativeReads=1;MQ=60;MQRankSum=4.696;QD=12.76;ReadPosRankSum=1.002;SOR=0.611;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,76:147:99:1905,0,1899:38,33,39,37
chr1	248129699	.	T	C	553.11	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=3.278;FractionInformativeReads=0.977;MQ=60;MQRankSum=0.135;QD=12.57;ReadPosRankSum=1.357;SOR=1.519;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:581,0,664:7,17,3,16
chr1	248129778	.	T	C	197.59	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.135;QD=16.47;ReadPosRankSum=-1.309;SOR=1.085;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:226,0,151:1,4,1,6
chr1	248167018	.	G	T	6330.2	PASS	AC=1;AF=0.5;AN=2;DP=1636;FractionInformativeReads=1;set=variant12-variant21-variant25-variant28-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:167,98:265:99:2429,0,4155:82,85,41,57
chr1	248167067	.	C	G,A	9340.95	PASS	AC=1,0;AF=0.429,0.071;AN=2;DP=1880;set=variant12-variant21-variant25-variant28-variant34-variant37-variant41	GT:DP:GQ:SB	0/1:246:99:80,80,40,46
chr1	248167072	.	T	G	9219.91	PASS	AC=1;AF=0.5;AN=2;DP=1372;set=variant12-variant21-variant25-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:158,87:245:99:3170,0,6662:80,78,42,45
chr1	248167092	.	T	C	8855.24	PASS	AC=1;AF=0.5;AN=2;DP=1761;FractionInformativeReads=1;set=variant12-variant21-variant25-variant28-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:141,86:227:99:3082,0,3493:67,74,42,44
chr1	248167096	.	C	T	8570.34	PASS	AC=1;AF=0.5;AN=2;DP=1733;FractionInformativeReads=1;set=variant12-variant21-variant25-variant28-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:140,86:226:99:2339,0,5807:64,76,44,42
chr1	248167268	.	C	T	2606.58	PASS	AC=1;AF=0.643;AN=2;DP=1007;set=variant12-variant21-variant25-variant28-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,72:154:99:1897,0,2095:38,44,31,41
chr1	248185339	.	T	C	2050.37	PASS	AC=1;AF=0.5;AN=2;DP=291;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:83,48:131:99:1158,0,2291:34,49,20,28
chr1	248202174	.	G	C	4968.32	PASS	AC=1;AF=0.5;AN=2;DP=393;FS=3.191;FractionInformativeReads=1;MQ=60;MQRankSum=2.076;QD=12.64;ReadPosRankSum=-4.591;SOR=0.863;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:204,189:393:99:4997,0,5496:102,102,102,87
chr1	248202283	.	A	G	4588.88	PASS	AC=1;AF=0.5;AN=2;DP=823;MQ=60;set=variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:190,225:415:99:5947,0,4653:91,99,109,116
chr1	248202344	.	G	C	5988.13	PASS	AC=2;AF=0.588;AN=2;DP=7556;set=variant6-variant8-variant9-variant12-variant13-variant15-variant20-variant21-variant23-variant25-variant28-variant29-variant34-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,398:398:99:12878,1192,0:0,0,185,213
chr1	248202522	.	G	C	2757.97	PASS	AC=1;AF=0.5;AN=2;DP=434;FractionInformativeReads=1;set=variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:101,114:215:99:2996,0,2418:41,60,46,68
chr1	248202589	.	A	C	1618.79	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=5.067;FractionInformativeReads=1;MQ=60;MQRankSum=1.624;QD=14.45;ReadPosRankSum=1.612;SOR=0.359;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,62:112:99:1647,0,1327:13,37,22,40
chr1	248202623	.	GAA	G	1326.85	PASS	AC=1;AF=0.5;AN=2;DP=167;MQ=60;set=variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,43:72:99:1718,0,1085:5,24,14,29
chr1	248224099	.	T	C	1977.85	PASS	AC=1;AF=0.563;AN=2;DP=2142;FractionInformativeReads=1;set=variant6-variant8-variant9-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant29-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,46:112:99:1247,0,1880:33,33,23,23
chr1	248224216	.	C	T	3230.38	PASS	AC=1;AF=0.563;AN=2;DP=3844;FractionInformativeReads=1;set=variant6-variant8-variant9-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant29-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,98:204:99:2532,0,3011:67,39,58,40
chr1	248224294	.	C	T	3566.33	PASS	AC=2;AF=0.588;AN=2;DP=5857;set=variant6-variant8-variant9-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant29-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,300:300:99:8987,898,0:0,0,146,154
chr1	248224398	.	A	G	1797.92	PASS	AC=1;AF=0.563;AN=2;DP=3957;set=variant6-variant8-variant9-variant12-variant13-variant15-variant20-filterInvariant21-variant22-variant23-variant29-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,57:203:99:1340,0,4096:65,81,12,45
chr1	248224489	.	A	G	518.66	PASS	AC=2;AF=0.625;AN=2;DP=2211;set=variant6-filterInvariant9-variant12-filterInvariant15-filterInvariant20-variant22-filterInvariant29-variant34-variant37-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3877,350,0:0,0,61,56
chr1	248224754	.	T	C	3457.18	PASS	AC=2;AF=0.588;AN=2;DP=4295;set=variant6-variant8-variant9-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant29-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5925,561,0:0,0,88,99
chr1	248247562	.	G	A	251.32	PASS	AC=1;AF=0.5;AN=2;DP=61;FractionInformativeReads=1;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,11:35:99:255,0,685:13,11,1,10
chr1	248247586	.	T	G	793.5	PASS	AC=1;AF=0.523;AN=2;DP=2055;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:424,0,283:5,6,9,6
chr1	248247588	.	T	A	165.24	PASS	AC=1;AF=0.5;AN=2;DP=1315;set=variant2-filterInvariant3-variant4-variant6-variant7-variant9-filterInvariant12-variant14-filterInvariant16-filterInvariant17-variant18-variant21-variant22-variant23-variant24-filterInvariant26-variant27-variant28-variant31-variant32-variant34-filterInvariant35-variant36-filterInvariant38-filterInvariant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:58:58,0,652:11,5,3,3
chr1	248247638	.	T	C	45.09	PASS	AC=1;AF=0.5;AN=2;DP=1188;set=filterInvariant4-filterInvariant6-variant8-variant9-variant10-variant13-variant15-variant17-variant25-filterInvariant28-filterInvariant29-filterInvariant30-variant31-filterInvariant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:421,0,165:4,5,9,5
chr1	248247693	.	C	T	31.39	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=43;FS=8.556;FractionInformativeReads=1;MQ=42.49;MQRankSum=-1.459;QD=0.73;ReadPosRankSum=-1.838;SOR=3.029;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:38,5:43:60:60,0,1072:22,16,5,0
chr1	248247744	.	G	T	243.64	PASS	AC=1;AF=0.5;AN=2;DP=1336;FractionInformativeReads=1;set=variant4-variant9-variant10-variant13-variant15-variant28-filterInvariant29-variant30-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,46:54:99:1899,0,197:8,0,25,21
chr1	248247745	.	GC	G	145.98	PASS	AC=2;AF=0.528;AN=2;DP=1858;set=filterInvariant3-variant4-variant9-variant10-filterInvariant11-variant13-variant15-variant20-variant28-filterInvariant29-variant30-variant31-variant35-filterInvariant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2467,166,0:0,0,33,21
chr1	248247748	.	G	A	1387.66	PASS	AC=1;AF=0.5;AN=2;DP=430;set=variant9-variant20-filterInvariant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,9:55:99:231,0,1896:25,21,9,0
chr1	248261886	.	A	G	78.94	PASS	AC=1;AF=0.5;AN=2;DP=18;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:114,0,106:3,2,3,2
chr1	248262118	.	C	T	126.11	PASS	AC=1;AF=0.5;AN=2;DP=20;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:109,0,160:2,4,3,1
chr1	248263495	.	T	G	2452.12	PASS	AC=1;AF=0.5;AN=2;DP=282;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,52:116:99:1369,0,1739:32,32,26,26
chr1	248264271	.	C	T	187.82	PASS	AC=1;AF=0.5;AN=2;DP=212;MQ=60;set=variant9-variant12-variant20-variant21-variant34-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:312,0,295:1,8,3,7
chr1	248285441	.	G	T	1642.03	PASS	AC=1;AF=0.5;AN=2;DP=1297;MQ=60;set=variant6-variant8-variant13-variant15-variant17-variant22-variant23-variant29-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,50:103:99:1623,0,1741:28,25,26,24
chr1	248285487	.	A	G	2392.55	PASS	AC=1;AF=0.5;AN=2;DP=1999;set=variant6-variant8-variant13-variant15-variant17-variant22-variant23-variant29-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,74:146:99:2010,0,2028:45,27,49,25
chr1	248309310	.	C	T	1874.75	PASS	AC=1;AF=0.5;AN=2;DP=162;FS=2.721;FractionInformativeReads=1;MQ=60;MQRankSum=0.608;QD=11.57;ReadPosRankSum=2.089;SOR=0.811;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:82,80:162:99:1903,0,2066:42,40,37,43
chr1	248402758	.	C	T	1201.62	PASS	AC=1;AF=0.78;AN=2;DP=4230;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,53:94:99:1466,0,1237:14,27,21,32
chr1	248436192	.	T	G	4733.87	PASS	AC=1;AF=0.5;AN=2;DP=349;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.701;QD=13.56;ReadPosRankSum=-0.084;SOR=0.696;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:148,201:349:99:4762,0,3283:75,73,102,99
chr1	248436611	.	G	A	1195.57	PASS	AC=2;AF=0.779;AN=2;DP=5161;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,68:70:99:2089,141,0:2,0,49,19
chr1	248436616	.	A	G	1251.01	PASS	AC=2;AF=0.779;AN=2;DP=5354;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:3272,226,0:0,0,53,22
chr1	248436805	.	T	G	554.62	PASS	AC=1;AF=0.739;AN=2;DP=4729;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,81:107:99:2108,0,331:14,12,29,52
chr1	248436912	.	T	C	303.72	PASS	AC=1;AF=0.5;AN=2;DP=81;FS=0;FractionInformativeReads=0.988;MQ=34.73;MQRankSum=-0.791;QD=3.75;ReadPosRankSum=-2.324;SOR=0.636;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,14:80:99:332,0,2980:32,34,7,7
chr1	248436925	.	A	G	836.11	PASS	AC=1;AF=0.5;AN=2;DP=385;set=variant2-variant31-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,9:67:99:245,0,2793:30,28,7,2
chr1	248436965	.	T	C	124.45	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=81;FS=5.529;FractionInformativeReads=1;MQ=42.23;MQRankSum=-3.554;QD=1.54;ReadPosRankSum=2.697;SOR=0.55;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:72,9:81:99:153,0,3970:47,25,4,5
chr1	248436966	.	G	A	124.45	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=83;FS=5.474;FractionInformativeReads=1;MQ=43.17;MQRankSum=-3.757;QD=1.5;ReadPosRankSum=2.644;SOR=0.556;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:74,9:83:99:153,0,3970:48,26,4,5
chr1	248436972	.	A	G	1199.74	PASS	AC=1;AF=0.529;AN=2;DP=1424;set=variant3-variant11-variant12-variant13-variant15-variant16-variant17-variant21-variant23-variant25-variant33-variant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,36:88:99:986,0,1195:28,24,24,12
chr1	248437247	.	GCCCTAA	G	1042.35	PASS	AC=2;AF=0.779;AN=2;DP=1639;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1349,93,0:0,0,10,21
chr1	248457979	.	C	A	3426.87	PASS	AC=2;AF=0.774;AN=2;DP=14543;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,293:293:99:8535,877,0:0,0,136,157
chr1	248458419	.	G	C	199.05	DRAGENHardSNP	AC=2;AF=1;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=28.85;MQRankSum=-0.751;QD=22.12;ReadPosRankSum=0.751;SOR=0.859;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:1,8:9:17:227,17,0:0,1,2,6
chr1	248458569	.	T	G	78.09	PASS	AC=1;AF=0.5;AN=2;DP=187;FractionInformativeReads=1;set=variant11-variant15-filterInvariant17-filterInvariant25-filterInvariant33-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,2:13:99:135,0,450:11,0,1,1
chr1	248458571	.	T	A	94.01	PASS	AC=1;AF=0.672;AN=2;DP=553;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:180,0,330:7,2,6,0
chr1	248458573	.	G	A	463.6	PASS	AC=1;AF=0.5;AN=2;DP=56;FractionInformativeReads=1;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:132,0,482:11,0,2,2
chr1	248458575	.	G	C	463.6	PASS	AC=1;AF=0.5;AN=2;DP=59;FractionInformativeReads=1;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:99:132,0,482:12,0,2,2
chr1	248458676	.	T	C	628.02	PASS	AC=1;AF=0.744;AN=2;DP=2911;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,60:68:6:1972,0,6:5,3,46,14
chr1	248458689	.	A	G	749.11	PASS	AC=1;AF=0.744;AN=2;DP=3532;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,71:83:99:2170,0,100:8,4,50,21
chr1	248458717	.	C	G	987.51	PASS	AC=1;AF=0.75;AN=2;DP=4673;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,63:116:99:1615,0,1345:33,20,38,25
chr1	248458760	.	C	A	3334.73	PASS	AC=1;AF=0.533;AN=2;DP=2340;set=variant3-variant8-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant34-variant35-variant39-variant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:144,15:159:99:179,0,6099:78,66,7,8
chr1	248458766	.	T	C	132.72	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=170;FS=1.034;FractionInformativeReads=1;MQ=58.79;MQRankSum=-6.351;QD=0.78;ReadPosRankSum=-0.478;SOR=0.723;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:155,15:170:99:161,0,6246:82,73,7,8
chr1	248458974	.	T	A	374.48	PASS	AC=2;AF=0.767;AN=2;DP=2414;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1585,158,0:0,0,18,35
chr1	248486895	.	G	T	1268.48	PASS	AC=2;AF=0.779;AN=2;DP=6591;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3586,355,0:0,0,76,43
chr1	248486913	.	A	G	1859.91	PASS	AC=2;AF=0.779;AN=2;DP=7850;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4229,399,0:0,0,85,48
chr1	248487300	.	C	T	4295.81	PASS	AC=1;AF=0.667;AN=2;DP=11759;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:150,144:294:99:3774,0,4121:76,74,77,67
chr1	248487338	.	C	A	4676.93	PASS	AC=2;AF=0.779;AN=2;DP=13757;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,284:284:99:9499,853,0:0,0,156,128
chr1	248487638	.	A	G	2425	PASS	AC=2;AF=0.779;AN=2;DP=7878;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:5649,470,0:0,0,75,82
chr1	248487768	.	A	G	4116.89	PASS	AC=2;AF=0.779;AN=2;DP=13893;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,316:316:99:10114,947,0:0,0,183,133
chr1	248512064	.	T	G	743.03	PASS	AC=2;AF=0.722;AN=2;DP=2737;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1760,168,0:0,0,36,20
chr1	248512094	.	C	T	1044.81	PASS	AC=2;AF=0.722;AN=2;DP=3539;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2303,219,0:0,0,42,31
chr1	248512637	.	C	T	1707.64	PASS	AC=2;AF=0.722;AN=2;DP=4299;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2741,245,0:0,0,36,46
chr1	248512749	.	G	A	1104.68	PASS	AC=2;AF=0.722;AN=2;DP=3048;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2283,201,0:0,0,33,34
chr1	248512767	.	G	T	996.32	PASS	AC=2;AF=0.722;AN=2;DP=2964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2298,201,0:0,0,34,33
chr1	248513023	.	G	A	2666.08	PASS	AC=2;AF=0.722;AN=2;DP=7753;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5570,525,0:0,0,73,102
chr1	248513088	.	G	C	1680.01	PASS	AC=2;AF=0.722;AN=2;DP=4560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2972,284,0:0,0,36,59
chr1	248525638	.	CA	C	3333.65	PASS	AC=2;AF=0.654;AN=2;DP=10718;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,205:208:99:5750,557,0:0,3,91,114
chr1	248550894	.	T	G	1021.13	PASS	AC=1;AF=0.5;AN=2;DP=895;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:650,0,807:21,7,17,8
chr1	248550970	.	A	G	2144.89	PASS	AC=1;AF=0.5;AN=2;DP=1770;MQ=60;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,64:119:99:1585,0,1342:31,24,35,29
chr1	248550976	.	T	G	1616.15	PASS	AC=2;AF=0.75;AN=2;DP=6050;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:4621,371,0:0,0,67,56
chr1	248551079	.	C	A	1265.11	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=0.691;FractionInformativeReads=1;MQ=60;MQRankSum=-0.821;QD=11;ReadPosRankSum=-0.423;SOR=0.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,54:115:99:1293,0,1754:28,33,26,28
chr1	248551194	.	C	T	1101.52	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=2.003;FractionInformativeReads=1;MQ=60;MQRankSum=-0.591;QD=15.74;ReadPosRankSum=-1.573;SOR=0.449;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,31:70:99:1130,0,3426:16,23,15,16
chr1	248551203	.	T	C	1473.14	PASS	AC=1;AF=0.5;AN=2;DP=1080;FractionInformativeReads=1;MQ=60;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,28:67:99:1058,0,3485:15,24,13,15
chr1	248551204	.	G	A	1030.08	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0.972;FractionInformativeReads=1;MQ=60;MQRankSum=0.835;QD=15.61;ReadPosRankSum=2.217;SOR=0.483;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:1058,0,3485:15,24,12,15
chr1	248551385	.	T	C	1029.93	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=0;FractionInformativeReads=0.99;MQ=60;MQRankSum=-1.236;QD=10.1;ReadPosRankSum=-2.736;SOR=0.738;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,44:101:99:1058,0,1437:33,24,26,18
chr1	248551636	.	T	G	2849.97	PASS	AC=1;AF=0.5;AN=2;DP=2728;MQ=60;set=variant3-variant11-variant13-variant15-variant16-variant17-variant25-variant33-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:95,91:186:99:2176,0,2509:45,50,46,45
chr1	248551972	.	T	A	199.61	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.466;QD=18.15;ReadPosRankSum=-1.408;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:228,0,167:0,5,0,6
chr1	248569282	.	A	G	882.65	PASS	AC=1;AF=0.615;AN=2;DP=2235;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:715,0,522:13,10,19,8
chr1	248569369	.	A	G	1955.64	PASS	AC=1;AF=0.618;AN=2;DP=5439;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,60:113:99:1556,0,1273:33,20,37,23
chr1	248570440	.	G	A	684.34	PASS	AC=2;AF=0.86;AN=2;DP=3269;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1765,164,0:0,0,20,35
chr1	248570551	.	A	AGAGT	481.3	PASS	AC=2;AF=0.763;AN=2;DP=1056;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:595,45,0:0,0,5,10
chr1	248570553	.	A	AT	481.3	PASS	AC=2;AF=0.763;AN=2;DP=967;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:45:595,45,0:0,0,4,9
chr1	248604384	.	A	G	107.32	PASS	AC=1;AF=0.5;AN=2;DP=67;FractionInformativeReads=1;set=variant19-variant22-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:287,0,222:4,2,7,2
chr1	248604417	.	A	C	237.64	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=3.787;FractionInformativeReads=1;MQ=48.35;MQRankSum=-1.334;QD=7.92;ReadPosRankSum=0.826;SOR=0.18;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:266,0,503:14,4,7,5
chr1	248604454	.	CAT	C	749.98	PASS	AC=1;AF=0.5;AN=2;DP=754;set=variant-variant3-variant4-variant7-variant9-variant10-variant14-variant17-variant19-variant20-variant22-variant30-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:621,0,666:11,6,8,8
chr1	248604465	.	C	T	1098.17	PASS	AC=1;AF=0.537;AN=2;DP=1608;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:639,0,684:11,7,8,9
chr1	248604542	.	C	T	995.3	PASS	AC=1;AF=0.565;AN=2;DP=1273;FractionInformativeReads=1;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-filterInvariant25-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:156,0,460:6,11,1,6
chr1	248604559	.	T	TTC	579.08	PASS	AC=2;AF=0.913;AN=2;DP=1076;set=variant2-filterInvariant3-variant4-variant5-variant6-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:42:617,42,0:0,0,0,13
chr1	248604614	.	A	T	294.6	PASS	AC=1;AF=0.533;AN=2;DP=893;FractionInformativeReads=1;set=variant2-variant4-variant5-variant6-variant8-variant11-filterInvariant12-filterInvariant14-variant15-variant16-filterInvariant17-variant18-variant19-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant32-filterInvariant33-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:176,0,169:1,5,2,6
chr1	248604694	.	C	T	169.39	PASS	AC=1;AF=0.5;AN=2;DP=380;set=filterInvariant2-variant4-variant5-filterInvariant7-variant8-filterInvariant13-filterInvariant24-filterInvariant26-filterInvariant29-variant34-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:104,0,100:2,3,1,3
chr1	248604971	.	T	C	556.08	PASS	AC=1;AF=0.5;AN=2;DP=222;FractionInformativeReads=1;set=variant7-variant14-variant16-variant22-variant36-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:291,0,387:13,2,11,0
chr1	248605362	.	C	G	2593.42	PASS	AC=1;AF=0.5;AN=2;DP=234;FS=4.554;FractionInformativeReads=1;MQ=55.18;MQRankSum=2.645;QD=11.08;ReadPosRankSum=-0.83;SOR=0.998;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:126,108:234:99:2622,0,2981:55,71,40,68
chr1	248605436	.	C	G	2239.47	PASS	AC=1;AF=0.692;AN=2;DP=2792;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,29:102:99:865,0,3195:25,48,9,20
chr1	248605442	.	G	T	598.84	PASS	AC=1;AF=0.688;AN=2;DP=2548;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,22:93:99:740,0,3155:24,47,6,16
chr1	248617173	.	A	G	61.77	PASS	AC=1;AF=0.526;AN=2;DP=456;FractionInformativeReads=1;set=filterInvariant-variant3-variant4-variant7-variant8-variant10-variant14-variant16-variant17-variant22-filterInvariant25-variant30-filterInvariant33-variant34-variant36-variant37-filterInvariant38-filterInvariant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,9:39:99:288,0,1951:10,20,0,9
chr1	248617181	.	C	T	61.77	PASS	AC=1;AF=0.529;AN=2;DP=364;FractionInformativeReads=1;set=filterInvariant-variant3-variant4-variant7-variant10-variant14-variant16-variant17-filterInvariant20-variant22-variant30-variant34-variant36-variant37-filterInvariant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,8:37:99:291,0,1929:9,20,0,8
chr1	248652011	.	A	T	226.58	PASS	AC=1;AF=0.5;AN=2;DP=471;FractionInformativeReads=1;set=variant7-filterInvariant9-filterInvariant17-filterInvariant28-filterInvariant34-filterInvariant37-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:6,20:26:84:417,0,84:2,4,10,10
chr1	248652023	.	G	A	226.58	PASS	AC=1;AF=0.5;AN=2;DP=463;set=variant7-filterInvariant9-filterInvariant17-filterInvariant28-variant34-filterInvariant37-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:6,20:26:84:417,0,84:2,4,10,10
chr1	248652058	.	G	A	182.66	PASS	AC=1;AF=0.5;AN=2;DP=1133;set=filterInvariant3-variant7-filterInvariant8-filterInvariant9-filterInvariant15-filterInvariant17-filterInvariant20-variant21-filterInvariant22-variant25-variant30-variant34-filterInvariant37-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:22,4:26:99:102,0,1062:10,12,2,2
chr1	248652061	.	C	T	188.61	PASS	AC=1;AF=0.5;AN=2;DP=1083;FractionInformativeReads=1;set=filterInvariant3-variant7-filterInvariant8-filterInvariant9-filterInvariant15-filterInvariant17-filterInvariant20-variant21-filterInvariant22-variant25-variant30-variant34-filterInvariant37-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:22,4:26:99:102,0,1062:10,12,2,2
chr1	248652071	.	G	C	84.59	PASS	AC=1;AF=0.5;AN=2;DP=932;set=filterInvariant3-variant7-filterInvariant8-filterInvariant9-filterInvariant15-filterInvariant17-filterInvariant20-variant21-filterInvariant22-variant25-variant30-variant34-filterInvariant37-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:367,0,101:2,4,7,7
chr1	248685253	.	T	C	3123.29	PASS	AC=2;AF=1;AN=2;DP=7063;FS=0;MQ=60;MQRankSum=0.584;ReadPosRankSum=0.793;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3571,345,0:0,0,59,56
chr1	248685719	.	A	T	1888.1	PASS	AC=2;AF=0.55;AN=2;DP=1371;MQ=60;set=variant7-variant8-variant14-variant16-variant22-variant23-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3309,300,0:0,0,52,48
chr1	248722611	.	C	G	53.02	PASS	AC=1;AF=0.725;AN=2;DP=460;FractionInformativeReads=1;set=filterInvariant-filterInvariant3-variant7-variant8-filterInvariant11-filterInvariant13-variant14-filterInvariant15-variant16-filterInvariant17-variant21-variant22-filterInvariant25-filterInvariant33-filterInvariant35-variant36-filterInvariant39-filterInvariant40-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:24:81,0,24:1,0,2,0
chr1	248722621	.	G	A	53.02	PASS	AC=1;AF=0.75;AN=2;DP=373;FractionInformativeReads=1;set=filterInvariant-variant7-variant8-filterInvariant10-variant14-variant16-variant21-variant22-variant36-filterInvariant39-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:66:78,0,66:2,0,2,0
chr1	248722624	.	C	T	53.02	PASS	AC=1;AF=0.75;AN=2;DP=388;FractionInformativeReads=1;set=filterInvariant-variant7-variant8-filterInvariant10-variant14-variant16-variant21-variant22-variant36-filterInvariant39-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:66:78,0,66:2,0,2,0
chr1	248722659	.	C	T	268.32	PASS	AC=2;AF=0.778;AN=2;DP=673;FractionInformativeReads=1;set=filterInvariant-filterInvariant4-variant7-variant8-variant9-filterInvariant10-variant14-variant16-variant21-variant22-filterInvariant28-filterInvariant34-variant36-filterInvariant37-filterInvariant38-variant39-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:328,30,0:0,0,10,0
chr1	248722671	.	T	A	296.4	PASS	AC=2;AF=0.759;AN=2;DP=1188;set=filterInvariant-variant3-filterInvariant4-variant7-variant8-variant9-filterInvariant10-variant11-variant13-variant14-variant15-variant16-variant17-filterInvariant20-variant21-variant22-filterInvariant25-filterInvariant28-variant33-filterInvariant34-variant35-variant36-filterInvariant37-variant39-variant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:395,36,0:0,0,12,0
chr1	248722722	.	T	C	654.17	PASS	AC=2;AF=0.833;AN=2;DP=908;set=variant-variant2-variant3-variant4-filterInvariant5-filterInvariant6-filterInvariant8-variant9-variant10-variant11-filterInvariant12-filterInvariant13-variant15-variant17-filterInvariant18-variant19-filterInvariant20-variant21-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-variant29-variant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-variant37-filterInvariant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:691,63,0:0,0,21,0
chr1	248722777	.	T	A	1274.98	PASS	AC=2;AF=0.621;AN=2;DP=1980;FractionInformativeReads=1;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,59:61:99:1576,133,0:1,1,30,29
chr1	248722883	.	A	G	1252.76	PASS	AC=1;AF=0.615;AN=2;DP=920;FractionInformativeReads=1;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant28-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:448,0,1121:6,16,2,11
chr1	248722888	.	C	G	1158.98	PASS	AC=1;AF=0.596;AN=2;DP=817;FractionInformativeReads=1;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant28-variant30-variant33-variant34-variant36-variant37-filterInvariant38-variant39-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:432,0,1063:6,13,1,10
chr1	248738133	.	A	G	329.2	PASS	AC=1;AF=0.515;AN=2;DP=2022;set=variant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,19:56:99:488,0,1117:8,29,4,15
chr1	248738183	.	G	T	35.46	PASS	AC=2;AF=0.7;AN=2;DP=75;FS=0;FractionInformativeReads=1;set=variant7-filterInvariant10-filterInvariant24-variant31-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:320,27,0:0,0,1,8
chr1	248801572	.	A	G	61.77	PASS	AC=2;AF=1;AN=2;DP=10;FS=0;FractionInformativeReads=1;set=filterInvariant7-filterInvariant22-filterInvariant34-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,0,4
chr1	248801575	.	C	G	61.77	PASS	AC=2;AF=1;AN=2;DP=10;FS=0;FractionInformativeReads=1;set=filterInvariant7-filterInvariant22-filterInvariant34-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,0,4
chr1	248802249	.	T	TAGA	97.32	PASS	AC=2;AF=1;AN=2;DP=52;FS=0;set=variant-variant3-variant4-variant7-variant8-variant14-variant16-variant17-variant20-variant22-variant25-variant33-variant34-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,4,1
chr1	248813695	.	A	G	979.25	PASS	AC=2;AF=1;AN=2;DP=32;FS=0;FractionInformativeReads=1;MQ=38.23;QD=30.6;SOR=2.765;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1007,96,0:0,0,26,6
chr1	248813829	.	G	A	2804.52	PASS	AC=1;AF=0.5;AN=2;DP=140;FS=1.878;FractionInformativeReads=1;MQ=42.64;MQRankSum=4.33;QD=20.03;ReadPosRankSum=2.339;SOR=0.544;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,117:140:99:2833,0,173:13,10,57,60
chr1	248813901	.	A	T	56.5	PASS	AC=1;AF=0.706;AN=2;DP=478;FractionInformativeReads=1;set=variant-filterInvariant2-variant4-filterInvariant7-variant8-variant10-variant13-variant14-variant19-variant24-filterInvariant25-variant28-variant29-variant31-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,61:84:99:1540,0,342:13,10,24,37
chr1	248814052	.	T	A	736.97	PASS	AC=1;AF=0.524;AN=2;DP=4177;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,78:104:99:1888,0,335:13,13,43,35
chr1	248814080	.	A	C	1679.89	PASS	AC=2;AF=0.989;AN=2;DP=5461;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,121:122:99:3129,354,0:0,1,62,59
chr1	248814126	.	G	A	409.82	PASS	AC=1;AF=0.526;AN=2;DP=5178;set=variant-variant2-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,63:133:99:1205,0,1423:31,39,29,34
chr1	248814209	.	GAT	G	486.89	PASS	AC=2;AF=0.563;AN=2;DP=335;set=variant4-variant7-variant14-variant19-variant22-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1252,87,0:0,0,8,21
chr1	248814216	.	C	T	501.92	PASS	AC=2;AF=0.571;AN=2;DP=223;FractionInformativeReads=1;set=variant4-variant7-variant14-variant19-variant22-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:87:1252,87,0:0,0,6,19
chr1	248902853	.	G	A	222.6	PASS	AC=2;AF=0.667;AN=2;DP=64;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:658,60,0:0,0,15,5
chr1	248903180	.	C	T	1444.77	PASS	AC=2;AF=0.833;AN=2;DP=480;MQ=60;MQRankSum=-0.299;ReadPosRankSum=1.519;set=variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3668,350,0:0,0,42,75
chr1	249105163	.	T	C	615.36	PASS	AC=1;AF=0.559;AN=2;DP=1129;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant13-variant14-variant17-variant22-variant27-variant33-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,19:51:99:419,0,887:13,19,11,8
chr1	249107065	.	C	T	301.95	PASS	AC=1;AF=0.5;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant10-variant17-variant33-variant34-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:144,0,244:3,4,4,0
chr1	249107105	.	A	G	383.5	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=3.682;FractionInformativeReads=1;MQ=60;MQRankSum=1.581;QD=15.34;ReadPosRankSum=-1.47;SOR=0.936;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:412,0,232:4,6,9,6
chr1	249109034	.	A	G	323.66	PASS	AC=1;AF=0.563;AN=2;DP=602;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant14-variant17-variant22-variant27-variant33-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:324,0,405:5,9,5,7
chr1	249110906	.	G	C	670.23	PASS	AC=1;AF=0.805;AN=2;DP=3287;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:653,0,1093:21,13,13,14
chr1	249120088	.	T	C	346.72	PASS	AC=1;AF=0.5;AN=2;DP=721;MQ=60;set=variant2-variant3-variant5-variant6-variant7-filterInvariant11-variant13-variant19-variant20-variant23-filterInvariant24-filterInvariant25-variant29-variant31-variant32-filterInvariant35-variant36-variant37-variant39-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:343,0,652:1,12,10,0
chr1	249120092	.	T	C	340.7	PASS	AC=1;AF=0.5;AN=2;DP=757;MQ=60;set=variant2-variant3-variant5-variant6-variant7-filterInvariant11-variant13-filterInvariant19-variant20-variant23-filterInvariant24-variant25-variant29-variant31-variant32-variant35-variant36-variant37-variant39-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:328,0,862:3,14,10,0
chr1	249120097	.	G	C	327.73	PASS	AC=1;AF=0.5;AN=2;DP=713;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant11-variant13-variant19-filterInvariant20-variant23-filterInvariant24-variant25-variant29-variant35-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:322,0,972:4,16,10,0
chr1	249120099	.	A	C	327.73	PASS	AC=1;AF=0.5;AN=2;DP=492;MQ=60;set=variant2-variant5-variant7-variant13-variant19-variant23-variant24-variant25-variant29-variant35-variant36-filterInvariant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,8:28:99:322,0,972:4,16,8,0
chr1	249120169	.	T	G	477.03	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.198;QD=12.89;ReadPosRankSum=-1.417;SOR=0.804;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:505,0,599:10,10,8,9
chr1	249132384	.	G	C	166.92	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=3.09;FractionInformativeReads=1;MQ=60;MQRankSum=0.566;QD=15.17;ReadPosRankSum=0.382;SOR=0.132;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:99:195,0,104:3,0,5,3
chr1	249145072	.	C	CA	810.63	PASS	AC=1;AF=0.559;AN=2;DP=695;MQ=60;set=variant3-variant4-variant7-variant8-variant13-variant14-variant17-variant20-variant21-variant22-variant27-variant28-variant34-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,8:29:99:236,0,756:8,13,3,5
chr1	249149486	.	T	C	1143.73	PASS	AC=2;AF=0.611;AN=2;DP=953;MQ=60;set=variant3-variant4-variant7-variant8-variant12-variant13-variant14-variant17-variant20-variant21-variant22-variant27-variant28-variant34-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1422,129,0:0,0,22,21
chr1	249208615	.	G	C	504.36	PASS	AC=1;AF=0.5;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant8-variant14-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,21:52:99:533,0,881:19,12,15,6
chr1	249208772	.	C	T	1099.99	PASS	AC=1;AF=0.5;AN=2;DP=163;FractionInformativeReads=1;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:641,0,897:14,20,11,16
chr1	249210707	.	G	A	414.02	PASS	AC=1;AF=0.5;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant7-variant14-variant22-variant27-variant28-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:310,0,316:9,0,9,2
chr2	39555	.	C	T	635.3	PASS	AC=1;AF=0.5;AN=2;DP=437;FractionInformativeReads=1;MQ=60;set=variant-variant22-variant24-variant26-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:610,0,762:19,10,13,10
chr2	41366	.	C	T	1008.76	PASS	AC=1;AF=0.5;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant-variant22-variant24-variant26-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:753,0,949:13,18,11,13
chr2	45895	.	A	G	2476.03	PASS	AC=2;AF=1;AN=2;DP=3360;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2115,170,0:0,0,32,25
chr2	224970	.	C	T	252.65	PASS	AC=1;AF=0.726;AN=2;DP=2304;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,17:46:99:384,0,851:13,16,11,6
chr2	234130	.	T	G	4429.58	PASS	AC=1;AF=0.589;AN=2;DP=3519;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,41:68:99:1063,0,680:18,9,24,17
chr2	239736	.	C	A	247.38	PASS	AC=1;AF=0.589;AN=2;DP=386;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:97:97,0,242:2,6,3,1
chr2	240054	.	A	G	246.09	PASS	AC=1;AF=0.726;AN=2;DP=3172;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,33:91:99:824,0,1423:30,28,15,18
chr2	240255	.	A	C	220.43	PASS	AC=1;AF=0.909;AN=2;DP=1985;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:28,19:47:99:460,0,751:12,16,8,11
chr2	240342	.	G	A	512.11	PASS	AC=1;AF=0.5;AN=2;DP=210;FractionInformativeReads=1;MQ=60;set=variant12-variant22-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:590,0,597:12,13,9,13
chr2	240630	.	T	G	1638.57	PASS	AC=1;AF=0.589;AN=2;DP=1537;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,26:49:99:815,0,558:15,8,12,14
chr2	241669	.	A	T	4943.19	PASS	AC=1;AF=0.589;AN=2;DP=4280;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,60:110:99:1460,0,1260:27,23,31,29
chr2	242732	.	T	TAAC	361.66	PASS	AC=1;AF=0.726;AN=2;DP=1039;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:203,0,512:10,3,3,4
chr2	242800	.	T	C	1725.45	PASS	AC=1;AF=0.597;AN=2;DP=1760;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,15:41:99:329,0,719:15,11,7,8
chr2	243504	.	C	T	1187.19	PASS	AC=1;AF=0.589;AN=2;DP=1348;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,15:43:99:325,0,777:19,9,10,5
chr2	243567	.	T	TA	701.61	PASS	AC=1;AF=0.726;AN=2;DP=3096;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,25:68:99:496,0,998:27,16,14,11
chr2	244568	.	AAAAG	A,AAAAGAAAG	410.16	PASS	AC=1,1;AF=0.098,0.72;AN=2;DP=728;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:17:84:0,0,13,4
chr2	256223	.	C	T	159.13	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.01;QD=9.36;ReadPosRankSum=-0.241;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:187,0,231:4,5,4,4
chr2	256278	.	T	C	709.82	PASS	AC=1;AF=0.589;AN=2;DP=738;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:223,0,266:4,7,3,6
chr2	260594	.	A	G	3382.66	PASS	AC=2;AF=1;AN=2;DP=4427;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2880,266,0:0,0,54,35
chr2	260677	.	G	A	6727.8	PASS	AC=1;AF=0.589;AN=2;DP=6176;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,72:170:99:1799,0,2485:54,44,42,30
chr2	262553	.	T	C	356.03	PASS	AC=1;AF=0.726;AN=2;DP=1793;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:305,0,410:11,3,9,5
chr2	263270	.	T	C	43.64	PASS	AC=1;AF=0.909;AN=2;DP=878;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:163,0,201:5,3,4,3
chr2	264895	.	G	C	5057.32	PASS	AC=2;AF=1;AN=2;DP=9392;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,177:177:99:5696,531,0:0,0,101,76
chr2	269352	.	G	A	3026.1	PASS	AC=1;AF=0.589;AN=2;DP=3004;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,43:86:99:1025,0,1011:22,21,19,24
chr2	271998	.	CAA	CA,CAAA,C	437.47	PASS	AC=0,1,0;AF=0.43,0.244,0.07;AN=2;DP=3458;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:37:99:11,9,11,6
chr2	272840	.	G	A	2390.7	PASS	AC=1;AF=0.726;AN=2;DP=5597;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,47:94:99:1258,0,1341:21,26,18,29
chr2	272926	.	A	G	2057.02	PASS	AC=1;AF=0.726;AN=2;DP=4786;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,32:73:99:909,0,1140:21,20,18,14
chr2	273070	.	A	G	1232.89	PASS	AC=1;AF=0.909;AN=2;DP=4491;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:30,48:78:99:1226,0,720:12,18,24,24
chr2	279705	.	C	T	8527.06	PASS	AC=1;AF=0.593;AN=2;DP=8907;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant30-variant32-variant34-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:128,134:262:99:3294,0,2924:59,69,61,73
chr2	283231	.	A	AT	133.32	PASS	AC=1;AF=0.919;AN=2;DP=1231;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:152,0,282:4,7,4,3
chr2	286812	.	G	A	296.33	PASS	AC=1;AF=0.909;AN=2;DP=994;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,3:16:84:84,0,370:8,5,3,0
chr2	287448	.	TAAAA	T,TA,TAA	474.57	PASS	AC=1,0,0;AF=0.372,0.512,0.012;AN=2;DP=1721;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:23:99:6,2,10,5
chr2	672745	.	T	C	389.81	PASS	AC=1;AF=0.595;AN=2;DP=614;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant9-variant10-variant11-variant18-variant22-variant23-variant25-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,21:27:99:589,0,134:5,1,15,6
chr2	675831	.	G	T	1364.59	PASS	AC=1;AF=0.685;AN=2;DP=1462;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant25-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,32:53:99:994,0,669:3,18,8,24
chr2	676177	.	C	G,T	6102.17	PASS	AC=2,0;AF=0.756,0.026;AN=2;DP=7939;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	1/1:202:99:1,0,83,118
chr2	676457	.	G	C	1166.38	PASS	AC=2;AF=0.878;AN=2;DP=2484;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:2562,172,0:0,0,37,16
chr2	676478	.	T	TGTAA	1807.39	PASS	AC=2;AF=0.866;AN=2;DP=3595;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:3330,223,0:0,0,48,25
chr2	677213	.	G	A	898.44	PASS	AC=2;AF=0.866;AN=2;DP=1686;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1215,108,0:0,0,27,9
chr2	677295	.	C	T	1108.53	PASS	AC=1;AF=0.545;AN=2;DP=1260;MQ=60;set=variant11-variant12-variant16-variant20-variant27-variant30-variant32-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,53:107:99:1158,0,1307:33,21,32,21
chr2	905581	.	C	T	277.65	PASS	AC=1;AF=0.5;AN=2;DP=137;set=filterInvariant11-filterInvariant13-variant15-filterInvariant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:79:79,0,194:3,5,2,4
chr2	1079130	.	G	A	2636.32	PASS	AC=1;AF=0.757;AN=2;DP=2305;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,22:59:99:819,0,2104:23,14,15,7
chr2	1079132	.	G	A	2636.32	PASS	AC=1;AF=0.757;AN=2;DP=2382;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,23:61:99:819,0,2104:24,14,15,8
chr2	1079143	.	A	G	804.84	PASS	AC=1;AF=0.805;AN=2;DP=3028;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,25:72:99:522,0,1187:29,18,15,10
chr2	1079320	.	C	T	1059.38	PASS	AC=1;AF=0.775;AN=2;DP=2683;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,21:49:99:433,0,814:7,21,9,12
chr2	1093965	.	G	A	3485.21	PASS	AC=2;AF=0.724;AN=2;DP=4430;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3170,315,0:0,0,57,48
chr2	1133188	.	G	GCACA	929.31	PASS	AC=2;AF=0.716;AN=2;DP=1266;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1529,102,0:0,0,27,6
chr2	1168756	.	G	A	1103.52	PASS	AC=1;AF=0.538;AN=2;DP=3925;MQ=60;set=variant2-variant4-variant6-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:83,61:144:99:1379,0,2157:44,39,28,33
chr2	1168982	.	T	A	334.23	PASS	AC=1;AF=0.548;AN=2;DP=256;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant10-variant15-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:70:70,0,205:0,5,1,2
chr2	1204561	.	T	C	229.37	PASS	AC=1;AF=0.542;AN=2;DP=354;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:363,0,192:3,2,6,3
chr2	1204570	.	G	A	305.12	PASS	AC=1;AF=0.553;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant25-variant26-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,12:17:99:450,0,183:3,2,7,5
chr2	1204612	.	A	G	511.46	PASS	AC=1;AF=0.54;AN=2;DP=600;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,24:33:99:972,0,315:5,4,14,10
chr2	1204615	.	C	G	511.47	PASS	AC=1;AF=0.54;AN=2;DP=614;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,23:32:99:972,0,315:5,4,14,9
chr2	1204668	.	CT	C	620.3	PASS	AC=1;AF=0.54;AN=2;DP=963;set=variant2-variant4-variant6-variant10-variant14-variant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,28:38:99:777,0,204:5,5,15,13
chr2	1241592	.	C	T	401.36	PASS	AC=2;AF=0.989;AN=2;DP=1399;MQ=60;MQRankSum=1.042;ReadPosRankSum=-0.347;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:652,57,0:0,0,14,5
chr2	1250878	.	T	C	482.51	PASS	AC=2;AF=0.729;AN=2;DP=985;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:869,72,0:0,0,19,5
chr2	1251087	.	A	AAAGGTT	1707.85	PASS	AC=1;AF=0.611;AN=2;DP=2346;MQ=60;set=variant2-variant3-variant5-variant12-variant13-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,44:115:99:1646,0,4463:35,36,24,20
chr2	1251088	.	C	T	1716.72	PASS	AC=1;AF=0.611;AN=2;DP=2310;MQ=60;set=variant2-variant3-variant5-variant12-variant13-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,43:115:99:1646,0,4463:35,37,24,19
chr2	1320143	.	C	T	1569.42	PASS	AC=1;AF=0.694;AN=2;DP=4882;MQ=60;set=variant-variant3-variant5-variant8-variant9-variant10-variant11-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,71:137:99:1690,0,1687:30,36,36,35
chr2	1320300	.	A	G	790.81	PASS	AC=1;AF=0.7;AN=2;DP=965;MQ=60;set=variant-variant3-variant5-variant8-variant9-variant10-variant11-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:402,0,660:3,9,2,9
chr2	1320304	.	C	A	793.82	PASS	AC=1;AF=0.7;AN=2;DP=883;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant9-variant10-variant11-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:444,0,657:3,9,1,9
chr2	1320305	.	G	C	755.14	PASS	AC=1;AF=0.7;AN=2;DP=874;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant9-variant10-variant11-variant13-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:444,0,657:3,8,1,9
chr2	1320332	.	T	TCCCTTATCTGAAATGCTTGAGACCAGAAGTGTTTGGGA	118.36	PASS	AC=1;AF=0.75;AN=2;DP=377;MQ=60;set=variant-variant5-variant8-variant9-variant11-variant13-variant19-variant20-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:111,0,474:1,3,1,2
chr2	1426621	.	A	G	351.75	PASS	AC=1;AF=0.721;AN=2;DP=584;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:200,0,313:8,2,6,0
chr2	1426796	.	G	C	1575.67	PASS	AC=1;AF=0.5;AN=2;DP=607;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant20-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,40:99:99:952,0,1504:32,27,20,20
chr2	1437163	.	A	C	945.06	PASS	AC=1;AF=0.571;AN=2;DP=835;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,23:34:99:667,0,346:10,1,13,10
chr2	1440299	.	A	G	732.54	PASS	AC=1;AF=0.571;AN=2;DP=781;MQ=60;set=variant3-variant4-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:643,0,368:2,10,2,17
chr2	1442417	.	C	T	275.04	PASS	AC=1;AF=0.575;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:67:67,0,199:5,1,1,2
chr2	1442476	.	T	C	737.59	PASS	AC=1;AF=0.571;AN=2;DP=880;MQ=60;set=variant3-variant4-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:385,0,358:9,5,11,5
chr2	1442551	.	ATTTT	ATTT,A,ATT,AT	264.11	PASS	AC=1,1,0,0;AF=0.302,0.267,0.012,0.012;AN=2;DP=3817;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	2/1:69:99:6,0,36,27
chr2	1442935	.	C	T	702.01	PASS	AC=1;AF=0.571;AN=2;DP=1143;MQ=60;set=variant3-variant4-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,25:40:99:671,0,353:9,6,14,11
chr2	1443068	.	A	G	644.96	PASS	AC=1;AF=0.571;AN=2;DP=979;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:667,0,481:8,10,9,13
chr2	1443174	.	A	G	307.22	PASS	AC=1;AF=0.5;AN=2;DP=83;FractionInformativeReads=1;MQ=60;set=variant3-variant20-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:393,0,240:2,7,4,8
chr2	1457364	.	A	G	1181.28	PASS	AC=1;AF=0.955;AN=2;DP=2543;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:29,20:49:99:570,0,724:17,12,16,4
chr2	1459806	.	A	G	434.7	PASS	AC=1;AF=0.955;AN=2;DP=1054;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:469,0,303:8,5,13,1
chr2	1460004	.	G	T	1975.83	PASS	AC=1;AF=0.636;AN=2;DP=3116;MQ=60;set=variant-variant3-variant4-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,51:92:99:1348,0,914:24,17,22,29
chr2	1460140	.	A	G	1172.29	PASS	AC=1;AF=0.636;AN=2;DP=1761;MQ=60;set=variant-variant3-variant4-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,25:58:99:568,0,907:16,17,9,16
chr2	1480698	.	G	C	572.3	PASS	AC=1;AF=0.5;AN=2;DP=179;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant20-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:372,0,709:16,8,11,3
chr2	1481231	.	G	C	1196.26	PASS	AC=1;AF=0.653;AN=2;DP=2488;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,39:76:99:954,0,983:18,19,19,20
chr2	1488668	.	T	C	309.61	PASS	AC=1;AF=0.635;AN=2;DP=1051;set=variant-variant2-variant3-variant4-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:481,0,482:3,13,1,14
chr2	1491497	.	T	C	476.5	PASS	AC=1;AF=0.614;AN=2;DP=1635;set=variant-variant2-variant3-variant4-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:597,0,695:18,6,16,2
chr2	1491510	.	CA	C,CAA	1003.77	PASS	AC=1,0;AF=0.318,0.227;AN=2;DP=728;set=variant3-variant20-variant22-variant23-variant25-variant26-variant30-variant34-variant35-variant41-variant44	GT:DP:GQ:SB	0/1:62:99:26,14,19,3
chr2	1497442	.	A	G	481.1	PASS	AC=1;AF=0.609;AN=2;DP=1764;set=variant-variant2-variant3-variant4-variant9-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:618,0,659:16,7,16,7
chr2	1499899	.	C	T	605.83	PASS	AC=1;AF=0.578;AN=2;DP=3511;set=variant-variant3-variant4-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,36:117:99:775,0,2106:44,37,21,15
chr2	1499927	.	A	C	785.85	PASS	AC=1;AF=0.576;AN=2;DP=4277;MQ=60;set=variant-variant3-variant4-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,46:144:99:855,0,2450:51,47,25,21
chr2	1500665	.	C	T	689.7	PASS	AC=1;AF=0.603;AN=2;DP=1496;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,22:35:99:544,0,340:3,10,11,11
chr2	1500759	.	C	T	89.43	PASS	AC=1;AF=0.5;AN=2;DP=44;FractionInformativeReads=1;MQ=60;set=variant3-variant20-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:193,0,187:2,4,1,5
chr2	1507598	.	G	T	2343.23	PASS	AC=1;AF=0.5;AN=2;DP=596;MQ=60;set=variant3-variant20-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,76:133:99:2250,0,1655:45,12,56,20
chr2	1507739	.	C	T	3027.86	PASS	AC=1;AF=0.5;AN=2;DP=311;FS=3.108;FractionInformativeReads=1;MQ=60;MQRankSum=4.288;QD=9.74;ReadPosRankSum=-4.104;SOR=0.882;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:182,129:311:99:3056,0,4774:87,95,56,73
chr2	1545110	.	G	A	300.17	PASS	AC=2;AF=0.73;AN=2;DP=749;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:774,66,0:0,0,7,15
chr2	1546327	.	C	G	2247.25	PASS	AC=2;AF=0.638;AN=2;DP=6472;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:2,189:191:99:6224,523,0:1,1,107,82
chr2	1546641	.	C	T	2642.26	PASS	AC=1;AF=0.5;AN=2;DP=209;FS=1.752;FractionInformativeReads=0.995;MQ=60;MQRankSum=-2.016;QD=12.64;ReadPosRankSum=0.427;SOR=0.569;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,109:208:99:2670,0,2607:35,64,42,67
chr2	1637531	.	A	G	1103.48	PASS	AC=1;AF=0.817;AN=2;DP=3238;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,34:60:99:968,0,743:14,12,18,16
chr2	1639060	.	A	G	85.71	PASS	AC=1;AF=0.531;AN=2;DP=505;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant9-variant10-variant11-variant15-variant16-variant25-variant29-variant30-variant34-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:347,0,329:9,2,7,5
chr2	1639122	.	T	C	1251.73	PASS	AC=1;AF=0.526;AN=2;DP=1518;MQ=60;set=variant-variant2-variant4-variant8-variant9-variant11-variant15-variant16-variant17-variant25-variant29-variant30-variant31-variant34-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,25:52:99:647,0,645:17,10,14,11
chr2	1642537	.	T	C	2401.77	PASS	AC=1;AF=0.884;AN=2;DP=1907;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,20:30:99:849,0,1216:9,1,16,4
chr2	1642539	.	C	T	2561.5	PASS	AC=1;AF=0.884;AN=2;DP=1983;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,21:32:99:934,0,1207:10,1,17,4
chr2	1642545	.	C	G	2749.29	PASS	AC=1;AF=0.884;AN=2;DP=2288;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,24:37:99:928,0,1250:11,2,19,5
chr2	1642803	.	CGGGTCTCATTTCAAGGTTTCCTGGGTGTGCACCGCCCCTGATGCTCTGAGCT	C	88.73	PASS	AC=1;AF=0.833;AN=2;DP=2658;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-filterInvariant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,56:67:99:187,0,3673:3,8,20,36
chr2	1647171	.	T	C	445.6	PASS	AC=1;AF=0.884;AN=2;DP=6111;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,69:136:99:1814,0,1504:40,27,46,23
chr2	1652822	.	T	G	2196.87	PASS	AC=1;AF=0.895;AN=2;DP=8688;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,94:200:99:2369,0,2426:56,50,49,45
chr2	1657078	.	C	T	1335.25	PASS	AC=1;AF=0.556;AN=2;DP=2224;MQ=60;set=variant5-variant7-variant10-variant11-variant16-variant18-variant23-variant25-variant28-variant29-variant30-variant33-variant34-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,67:105:99:1603,0,993:16,22,33,34
chr2	1664654	.	A	G	1171.22	PASS	AC=1;AF=0.825;AN=2;DP=3668;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,54:73:99:1437,0,465:16,3,37,17
chr2	1667267	.	C	G	1035.41	PASS	AC=1;AF=0.545;AN=2;DP=2638;FractionInformativeReads=1;set=variant-variant4-variant5-variant7-variant10-variant11-variant12-variant16-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant34-variant35-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,45:102:99:1144,0,1578:39,18,29,16
chr2	1667310	.	G	A	1465.25	PASS	AC=1;AF=0.769;AN=2;DP=6856;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,79:162:99:1967,0,1977:49,34,48,31
chr2	1683923	.	G	T	244.58	PASS	AC=1;AF=0.5;AN=2;DP=175;MQ=60;set=variant2-variant7-variant21-variant32-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:398,0,378:11,1,10,5
chr2	1747993	.	G	A	427.08	PASS	AC=1;AF=0.611;AN=2;DP=649;MQ=60;set=variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant22-variant23-variant25-variant29-variant30-variant33-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:489,0,339:9,5,12,7
chr2	1748429	.	T	C	193.34	PASS	AC=1;AF=0.647;AN=2;DP=192;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant10-variant11-variant12-variant13-variant15-variant18-variant22-variant23-variant25-variant29-variant30-variant33-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:144,0,250:2,7,2,4
chr2	1748463	.	G	A	132.13	PASS	AC=1;AF=0.607;AN=2;DP=135;MQ=60;set=variant3-variant5-variant10-variant12-variant13-variant15-variant22-variant23-variant25-variant29-variant33-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:111,0,178:0,6,2,3
chr2	1793809	.	T	C	1645.76	PASS	AC=1;AF=0.559;AN=2;DP=1888;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant12-variant14-variant15-variant20-variant24-variant26-variant27-variant28-variant33-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,47:92:99:1153,0,1076:24,21,25,22
chr2	1793988	.	AT	A	649.74	PASS	AC=1;AF=0.75;AN=2;DP=1330;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:181,0,181:4,4,3,5
chr2	1805430	.	G	A	1270.5	PASS	AC=1;AF=0.5;AN=2;DP=1001;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant14-variant26-variant27-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,60:111:99:1301,0,1285:27,24,33,27
chr2	1805489	.	A	G	1389.95	PASS	AC=1;AF=0.5;AN=2;DP=935;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant14-variant26-variant27-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,47:97:99:1167,0,1206:23,27,18,29
chr2	1842968	.	T	A,C	2106.95	PASS	AC=0,1;AF=0.121,0.5;AN=2;DP=4783;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant16-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:148:99:54,30,41,23
chr2	1843285	.	A	G	343.68	PASS	AC=1;AF=0.621;AN=2;DP=615;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant16-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:417,0,422:2,12,2,11
chr2	1844458	.	T	C	824.95	PASS	AC=1;AF=0.621;AN=2;DP=1542;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant16-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:620,0,449:13,5,12,11
chr2	1844652	.	C	T	1237.9	PASS	AC=1;AF=0.63;AN=2;DP=1774;set=variant-variant3-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant16-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,37:61:99:1286,0,791:6,18,14,23
chr2	1846553	.	T	G	1356.85	PASS	AC=1;AF=0.621;AN=2;DP=4731;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant16-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,51:134:99:1779,0,3822:42,41,26,25
chr2	1846614	.	C	T	2864.01	PASS	AC=1;AF=0.5;AN=2;DP=1566;set=variant3-variant5-variant12-variant14-variant16-variant20-variant26-variant27-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,49:121:99:1783,0,3496:37,35,24,25
chr2	1890070	.	C	T	377.99	PASS	AC=2;AF=0.907;AN=2;DP=653;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:559,51,0:0,0,12,5
chr2	1890173	.	A	G	529.3	PASS	AC=1;AF=0.619;AN=2;DP=894;MQ=60;set=variant3-variant4-variant6-variant9-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:457,0,503:12,9,9,9
chr2	1926437	.	G	T	1922.77	PASS	AC=2;AF=0.966;AN=2;DP=5998;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4730,432,0:0,0,78,67
chr2	1946646	.	A	C	2821.05	PASS	AC=1;AF=0.63;AN=2;DP=2369;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant33-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,35:87:99:922,0,1265:27,25,22,13
chr2	1946914	.	A	G	658.35	PASS	AC=1;AF=0.66;AN=2;DP=1525;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant33-variant34-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:421,0,559:10,11,9,6
chr2	3192798	.	T	C	358.5	PASS	AC=2;AF=0.898;AN=2;DP=841;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:41:368,41,0:0,0,7,7
chr2	3193040	.	G	A	1752.78	PASS	AC=1;AF=0.597;AN=2;DP=2864;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:926,0,1145:26,15,24,13
chr2	3196040	.	A	G	293.66	PASS	AC=2;AF=0.93;AN=2;DP=629;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:435,33,0:0,0,9,2
chr2	3200948	.	C	A	394.59	PASS	AC=2;AF=0.953;AN=2;DP=735;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:429,39,0:0,0,3,10
chr2	3211757	.	C	G	6217.6	PASS	AC=2;AF=0.977;AN=2;DP=7427;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,155:155:99:5058,464,0:0,0,106,49
chr2	3211790	.	T	C	8749.84	PASS	AC=2;AF=0.977;AN=2;DP=10226;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,220:220:99:6815,659,0:0,0,137,83
chr2	3212105	.	A	G	2726.41	PASS	AC=2;AF=0.943;AN=2;DP=3819;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2988,266,0:0,0,38,51
chr2	3212247	.	G	T	1362.24	PASS	AC=1;AF=0.692;AN=2;DP=3382;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,40:90:99:951,0,1307:28,22,20,20
chr2	3212704	.	C	A	2758.6	PASS	AC=2;AF=0.694;AN=2;DP=3834;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,110:111:99:3606,306,0:0,1,38,72
chr2	3217777	.	A	C	715.65	PASS	AC=2;AF=0.977;AN=2;DP=467;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:470,36,0:0,0,12,0
chr2	3217794	.	T	C	802.15	PASS	AC=2;AF=0.977;AN=2;DP=676;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:552,39,0:0,0,12,1
chr2	3217908	.	G	C	2909.18	PASS	AC=2;AF=0.977;AN=2;DP=4046;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2275,207,0:0,0,39,30
chr2	3277884	.	A	G	702.4	PASS	AC=1;AF=0.611;AN=2;DP=693;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:301,0,347:9,1,9,1
chr2	3277947	.	T	A	257.27	PASS	AC=1;AF=0.684;AN=2;DP=1728;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:644,0,581:17,5,17,4
chr2	3322797	.	C	A	759.79	PASS	AC=1;AF=0.554;AN=2;DP=1696;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant13-variant16-variant17-variant19-variant20-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,29:55:99:719,0,637:10,16,10,19
chr2	3342009	.	T	C	196.43	PASS	AC=1;AF=0.574;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant13-variant16-variant17-variant19-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:31:188,0,31:0,2,0,5
chr2	3356849	.	A	G	539.43	PASS	AC=1;AF=0.679;AN=2;DP=1072;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:298,0,370:10,2,8,1
chr2	3356953	.	A	T	4668.57	PASS	AC=2;AF=1;AN=2;DP=6502;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3606,356,0:0,0,76,43
chr2	3356995	.	G	A	1992.02	PASS	AC=1;AF=0.5;AN=2;DP=2917;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant12-variant20-variant25-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,76:158:99:1801,0,1935:44,38,45,31
chr2	3358458	.	ATTATGAAGTTAGAT	A	2704.93	PASS	AC=2;AF=1;AN=2;DP=3092;FS=0;MQRankSum=1.546;ReadPosRankSum=1.023;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2657,179,0:0,0,18,41
chr2	3391826	.	C	T	1517.13	PASS	AC=2;AF=0.643;AN=2;DP=1150;MQ=60;set=variant4-variant8-variant10-variant12-variant13-variant14-variant19-variant21-variant24-variant26-variant29-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1615,155,0:0,0,29,23
chr2	3392075	.	T	C	3668.3	PASS	AC=2;AF=0.694;AN=2;DP=12412;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,275:275:99:8818,825,0:0,0,121,154
chr2	3392295	.	A	G	3477.02	PASS	AC=2;AF=0.603;AN=2;DP=7944;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,229:229:99:6939,685,0:0,0,116,113
chr2	3392513	.	T	C	1927.88	PASS	AC=2;AF=0.694;AN=2;DP=5168;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:7482,506,0:0,0,69,97
chr2	3392514	.	T	A	1927.88	PASS	AC=2;AF=0.694;AN=2;DP=5113;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:7482,506,0:0,0,70,98
chr2	3393288	.	A	G	118.65	PASS	AC=2;AF=0.7;AN=2;DP=431;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:57:823,57,0:0,0,12,5
chr2	3393289	.	A	C	118.65	PASS	AC=2;AF=0.7;AN=2;DP=444;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:823,57,0:0,0,13,6
chr2	3393565	.	C	CAA	2995.93	PASS	AC=2;AF=0.621;AN=2;DP=4943;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:6784,466,0:0,0,58,96
chr2	3425514	.	G	C	1519.09	PASS	AC=1;AF=0.689;AN=2;DP=3757;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,43:76:99:1128,0,878:14,19,19,24
chr2	3425948	.	T	C	309.05	PASS	AC=1;AF=0.689;AN=2;DP=1053;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:416,0,294:4,7,3,9
chr2	3460870	.	T	C	112.9	PASS	AC=2;AF=0.667;AN=2;DP=173;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant18-variant19-variant21-variant23-variant24-variant26-variant29-variant32-variant33-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:560,45,0:0,0,13,2
chr2	3469278	.	C	G	2019.26	PASS	AC=2;AF=0.604;AN=2;DP=1749;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant16-variant21-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2383,222,0:0,0,47,27
chr2	3469463	.	G	C	1197.1	PASS	AC=2;AF=0.673;AN=2;DP=2894;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant14-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3308,320,0:0,0,49,58
chr2	3469702	.	A	G	570.77	PASS	AC=2;AF=0.65;AN=2;DP=767;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1134,81,0:0,0,9,18
chr2	3469708	.	A	G	278.3	PASS	AC=1;AF=0.526;AN=2;DP=402;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant12-variant14-variant24-variant25-variant26-variant29-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:342,0,448:4,10,5,8
chr2	3470115	.	T	C	2602.62	PASS	AC=2;AF=0.648;AN=2;DP=4925;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant29-variant32-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:6572,448,0:0,0,76,73
chr2	3470124	.	G	A	4640.03	PASS	AC=2;AF=0.646;AN=2;DP=4505;MQ=60;set=variant3-variant4-variant7-variant8-variant9-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant29-variant32-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:6363,436,0:0,0,76,67
chr2	3470186	.	G	C	2540.84	PASS	AC=2;AF=0.667;AN=2;DP=3911;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-variant13-variant14-variant16-variant18-variant19-variant21-variant23-variant24-variant26-variant29-variant32-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3785,378,0:0,0,59,67
chr2	3470254	.	T	G	1240.25	PASS	AC=2;AF=0.648;AN=2;DP=2469;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-variant13-variant14-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2379,204,0:0,0,18,50
chr2	3481637	.	T	C	769.86	PASS	AC=2;AF=0.654;AN=2;DP=935;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-filterInvariant13-variant14-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:762,75,0:0,0,8,17
chr2	3481659	.	G	A	674.34	PASS	AC=2;AF=0.667;AN=2;DP=783;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-variant14-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:684,63,0:0,0,9,12
chr2	3481716	.	T	C	489.72	PASS	AC=2;AF=0.654;AN=2;DP=656;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-variant13-variant14-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:646,57,0:0,0,9,10
chr2	3481857	.	G	T	45.11	PASS	AC=2;AF=0.765;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant9-variant14-variant16-variant19-variant21-variant24-variant26-variant29-variant32-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,0,5
chr2	3482796	.	T	G	1325.89	PASS	AC=2;AF=0.575;AN=2;DP=2213;MQ=60;set=variant4-variant5-variant8-variant9-variant12-variant14-variant16-variant22-variant24-variant26-variant28-variant29-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2576,262,0:0,0,35,53
chr2	3482912	.	G	A	596.96	PASS	AC=2;AF=0.588;AN=2;DP=590;MQ=60;set=variant4-variant5-variant8-variant9-variant12-variant14-variant16-variant24-variant26-variant29-variant32-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,45:47:85:1714,85,0:0,2,26,19
chr2	3483205	.	C	T	4791.91	PASS	AC=2;AF=0.66;AN=2;DP=4543;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-variant13-variant14-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5480,518,0:0,0,78,95
chr2	3483390	.	T	G	1246.74	PASS	AC=2;AF=0.66;AN=2;DP=1597;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-variant13-variant14-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1984,171,0:0,0,15,42
chr2	3488502	.	A	G	3210.46	PASS	AC=2;AF=0.643;AN=2;DP=6296;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,203:203:99:6089,607,0:0,0,105,98
chr2	3502035	.	C	T	4068.77	PASS	AC=2;AF=0.6;AN=2;DP=4506;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant16-variant24-variant29-variant32-variant34-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,281:281:99:11982,845,0:0,0,107,174
chr2	3502055	.	T	G	3864.45	PASS	AC=2;AF=0.6;AN=2;DP=3954;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant16-variant24-variant29-variant32-variant34-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,244:244:99:10768,748,0:0,0,99,145
chr2	3502198	.	T	A	2153.89	PASS	AC=2;AF=0.6;AN=2;DP=2475;set=variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant16-variant24-variant29-variant32-variant34-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3808,359,0:0,0,57,63
chr2	3502398	.	C	T	910.52	PASS	AC=2;AF=0.6;AN=2;DP=1078;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant16-variant24-variant29-variant32-variant34-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2277,210,0:0,0,37,33
chr2	3502625	.	T	C	1467.47	PASS	AC=2;AF=0.6;AN=2;DP=2121;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant16-variant24-variant29-variant32-variant34-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4367,413,0:0,0,69,69
chr2	3502709	.	A	G	1302.49	PASS	AC=2;AF=0.6;AN=2;DP=1888;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant16-variant24-variant29-variant32-variant34-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3724,373,0:0,0,56,69
chr2	3502909	.	A	ACTT	1454.7	PASS	AC=2;AF=0.603;AN=2;DP=2251;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2665,182,0:0,0,28,32
chr2	3502910	.	G	T	1463.74	PASS	AC=2;AF=0.603;AN=2;DP=2209;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2665,182,0:0,0,28,31
chr2	3502932	.	G	A	858.31	PASS	AC=2;AF=0.6;AN=2;DP=961;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant16-variant24-variant29-variant32-variant34-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1575,156,0:0,0,23,29
chr2	3503108	.	C	T	459.68	PASS	AC=2;AF=0.6;AN=2;DP=282;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant16-variant24-variant29-variant32-variant34-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:618,60,0:0,0,6,14
chr2	3504290	.	GTGTACCTGCCGCCGCA	G	1382.98	PASS	AC=2;AF=0.617;AN=2;DP=2391;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3030,209,0:0,0,49,20
chr2	3504687	.	A	G	1415.06	PASS	AC=2;AF=0.607;AN=2;DP=5767;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,181:181:99:5655,542,0:0,0,90,91
chr2	3504819	.	A	G	638.77	PASS	AC=2;AF=0.603;AN=2;DP=2669;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2478,242,0:0,0,30,51
chr2	3504893	.	G	GA	94.03	PASS	AC=2;AF=0.607;AN=2;DP=723;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:705,63,0:0,0,2,19
chr2	3579760	.	T	C	875.16	PASS	AC=1;AF=0.645;AN=2;DP=2374;MQ=60;set=variant2-variant3-variant4-variant6-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,42:71:99:1252,0,831:18,11,23,19
chr2	3592692	.	T	TA	91.31	PASS	AC=1;AF=0.667;AN=2;DP=21;MQ=60;set=variant26-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:12:85,0,12:1,0,2,2
chr2	3595593	.	T	C	789.19	PASS	AC=1;AF=0.5;AN=2;DP=101;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,17:45:99:365,0,660:16,12,10,7
chr2	3595834	.	C	A	304.81	PASS	AC=1;AF=0.5;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant16-variant24-variant26-variant29-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:201,0,256:0,7,0,6
chr2	3597974	.	T	C	243.14	PASS	AC=1;AF=0.645;AN=2;DP=923;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:302,0,608:15,5,10,1
chr2	3599539	.	A	G	65.91	PASS	AC=1;AF=0.5;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant12-variant14-variant22-variant24-variant25-variant31-variant33-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:106,0,245:6,1,3,1
chr2	3599700	.	G	T	897.57	PASS	AC=2;AF=0.73;AN=2;DP=2781;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1976,192,0:0,0,35,29
chr2	3600012	.	CCTCT	C	529.65	PASS	AC=1;AF=0.5;AN=2;DP=473;MQ=60;set=variant6-variant10-variant12-variant14-variant22-variant24-variant25-variant31-variant33-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:748,0,1256:6,18,4,16
chr2	3605468	.	A	G	2208.25	PASS	AC=1;AF=0.738;AN=2;DP=6677;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,70:142:99:1818,0,1776:34,38,31,39
chr2	3606119	.	A	G	954.39	PASS	AC=1;AF=0.5;AN=2;DP=367;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,32:80:99:777,0,1253:15,33,13,19
chr2	3627648	.	G	C	1777.87	PASS	AC=2;AF=0.814;AN=2;DP=4665;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3176,323,0:0,0,52,56
chr2	3628383	.	C	A	303.45	PASS	AC=1;AF=0.5;AN=2;DP=172;FractionInformativeReads=1;set=variant6-variant10-variant12-variant22-variant24-variant25-variant31-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:303,0,223:6,0,8,0
chr2	3653279	.	C	T	543.97	PASS	AC=1;AF=0.684;AN=2;DP=748;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:221,0,277:5,4,6,2
chr2	3653576	.	A	G	3186.37	PASS	AC=1;AF=0.684;AN=2;DP=3252;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,38:79:99:1189,0,1175:29,12,25,13
chr2	3653844	.	T	C	4314.7	PASS	AC=1;AF=0.7;AN=2;DP=5662;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,68:150:99:1822,0,2227:26,56,22,46
chr2	3660752	.	T	C	1173.47	PASS	AC=1;AF=0.692;AN=2;DP=1704;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:771,0,571:14,5,19,4
chr2	3660856	.	G	A	1381.99	PASS	AC=1;AF=0.5;AN=2;DP=924;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant30-variant34-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,56:128:99:1214,0,1713:37,35,25,31
chr2	3673648	.	G	A	1245.81	PASS	AC=1;AF=0.5;AN=2;DP=1835;MQ=60;set=variant2-variant6-variant15-variant16-variant20-variant23-variant29-variant31-variant32-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,41:101:99:839,0,1393:34,26,20,21
chr2	3685046	.	T	C	1393.42	PASS	AC=2;AF=0.845;AN=2;DP=1947;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1566,129,0:0,0,33,10
chr2	3685074	.	A	G	1976.82	PASS	AC=2;AF=0.845;AN=2;DP=2850;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2242,203,0:0,0,48,20
chr2	3685162	.	G	A	1875.77	PASS	AC=1;AF=0.5;AN=2;DP=146;FS=6.102;FractionInformativeReads=1;MQ=60;MQRankSum=-0.63;QD=12.85;ReadPosRankSum=0.266;SOR=1.039;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,75:146:99:1904,0,1696:34,37,44,31
chr2	3688738	.	C	T	1286.23	PASS	AC=1;AF=0.5;AN=2;DP=161;FractionInformativeReads=1;set=variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,50:81:99:1314,0,792:21,10,32,18
chr2	3688837	.	G	A	2190.41	PASS	AC=1;AF=0.5;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:86,98:184:99:2219,0,2112:45,41,47,51
chr2	3691548	.	A	G	2838.27	PASS	AC=1;AF=0.5;AN=2;DP=1872;MQ=60;set=variant10-variant12-variant13-variant14-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:156,105:261:99:2481,0,3616:76,80,44,61
chr2	3705982	.	C	A	78.73	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;set=variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:59:59,0,120:1,3,1,2
chr2	3721729	.	A	G	2049.29	PASS	AC=1;AF=0.625;AN=2;DP=2388;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,42:77:99:1000,0,780:17,18,20,22
chr2	3725964	.	C	T	1244.21	PASS	AC=1;AF=0.548;AN=2;DP=2457;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant12-variant16-variant19-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,43:100:99:1176,0,1638:38,19,31,12
chr2	3726163	.	T	C	1492.71	PASS	AC=1;AF=0.667;AN=2;DP=5100;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,70:151:99:1906,0,2166:26,55,26,44
chr2	3748938	.	G	A	369.02	PASS	AC=1;AF=0.5;AN=2;DP=68;FractionInformativeReads=1;MQ=60;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:495,0,694:18,3,14,0
chr2	3749084	.	T	C	1226.61	PASS	AC=1;AF=0.567;AN=2;DP=4628;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,80:161:99:1876,0,1998:39,42,38,42
chr2	3749151	.	GGAA	G	1907.69	PASS	AC=1;AF=0.652;AN=2;DP=4232;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,58:127:99:2228,0,2825:30,39,24,34
chr2	3749267	.	G	A	320.05	PASS	AC=1;AF=0.567;AN=2;DP=734;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:461,0,482:3,13,3,12
chr2	3756073	.	G	A	199.74	PASS	AC=1;AF=0.638;AN=2;DP=537;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant16-variant19-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:277,0,214:6,2,7,5
chr2	3774436	.	C	T	640.97	PASS	AC=2;AF=0.989;AN=2;DP=990;FS=0;MQ=60;MQRankSum=-1.707;ReadPosRankSum=0.919;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:888,75,0:0,0,18,7
chr2	3774448	.	T	C	295.78	PASS	AC=1;AF=0.628;AN=2;DP=1030;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:442,0,385:11,3,11,4
chr2	3774494	.	C	G	889.96	PASS	AC=1;AF=0.5;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:615,0,759:18,9,14,9
chr2	3774519	.	T	C	2508.99	PASS	AC=2;AF=0.977;AN=2;DP=2911;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1996,198,0:0,0,36,30
chr2	3800383	.	C	T	4439.52	PASS	AC=1;AF=0.708;AN=2;DP=4613;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,44:117:99:1095,0,1772:31,42,19,25
chr2	3800496	.	C	T	2720.63	PASS	AC=1;AF=0.708;AN=2;DP=3526;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,40:92:99:985,0,1261:24,28,16,24
chr2	3815250	.	A	G	1355.65	PASS	AC=1;AF=0.757;AN=2;DP=1807;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:423,0,457:12,9,12,4
chr2	3815477	.	T	A	310.06	PASS	AC=1;AF=0.545;AN=2;DP=561;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant17-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:516,0,714:8,18,3,15
chr2	3816733	.	C	T	100.83	PASS	AC=1;AF=0.545;AN=2;DP=174;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant17-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:319,0,286:6,2,8,3
chr2	3826324	.	C	T	435.26	PASS	AC=1;AF=0.563;AN=2;DP=1056;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant31-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,14:43:99:259,0,675:17,12,8,6
chr2	3826387	.	T	C	699.91	PASS	AC=1;AF=0.563;AN=2;DP=1488;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant31-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,21:62:99:534,0,1126:23,18,13,8
chr2	3826597	.	G	A	160.84	PASS	AC=1;AF=0.563;AN=2;DP=1083;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant31-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,12:41:99:286,0,864:9,20,3,9
chr2	3832358	.	T	C	328.63	PASS	AC=2;AF=0.779;AN=2;DP=431;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:347,30,0:0,0,8,2
chr2	4135981	.	C	T	860.78	PASS	AC=1;AF=0.677;AN=2;DP=2013;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,31:64:99:825,0,819:16,17,18,13
chr2	4136145	.	A	G	399.82	PASS	AC=1;AF=0.63;AN=2;DP=585;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant9-variant10-variant11-variant12-variant14-variant15-variant20-variant21-variant22-variant28-variant29-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:506,0,267:4,6,3,14
chr2	5832667	.	T	C	76.45	PASS	AC=2;AF=0.872;AN=2;DP=351;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:266,21,0:0,0,5,2
chr2	5834249	.	G	GTGA	1072.75	PASS	AC=1;AF=0.528;AN=2;DP=1471;set=variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant25-variant27-variant32-variant33-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,41:66:99:1656,0,961:15,10,24,17
chr2	5834918	.	CA	CAA,C	918.39	PASS	AC=1,0;AF=0.4,0.1;AN=2;DP=543;MQ=60;set=variant10-variant14-variant15-variant20-variant41	GT:DP:GQ:SB	0/1:98:99:35,20,31,12
chr2	5835564	.	GA	G	2433.14	PASS	AC=1;AF=0.5;AN=2;DP=3397;MQ=60;set=variant8-variant10-variant13-variant15-variant17-variant20-variant25-variant27-variant32-variant33-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,86:183:99:1895,0,2133:50,47,39,47
chr2	5835697	.	GTTT	GTT,GT,G,GTTTTT	1402.93	PASS	AC=1,0,0,0;AF=0.378,0.134,0.11,0.012;AN=2;DP=10498;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:160:99:48,20,17,75
chr2	5838030	.	G	A	3935.26	PASS	AC=1;AF=0.603;AN=2;DP=7717;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,104:200:99:2752,0,2807:59,37,63,41
chr2	5838161	.	AT	A	4460.6	PASS	AC=1;AF=0.603;AN=2;DP=9735;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,138:256:99:2945,0,2412:53,65,65,73
chr2	5838683	.	TAAA	TAA,TAAAA,T,TA	1600.76	PASS	AC=0,0,1,0;AF=0.338,0.095,0.162,0.041;AN=2;DP=4838;set=variant-variant2-variant4-variant5-filterInvariant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-filterInvariant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:116:99:36,23,38,19
chr2	5839686	.	A	G	6296.53	PASS	AC=1;AF=0.621;AN=2;DP=10809;MQ=60;set=variant-variant2-variant4-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,181:333:99:4894,0,3683:78,74,83,98
chr2	5839811	.	T	C	3721.04	PASS	AC=1;AF=0.5;AN=2;DP=3154;MQ=60;set=variant8-variant10-variant15-variant17-variant20-variant25-variant27-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:108,114:222:99:3311,0,2784:41,67,48,66
chr2	5839841	.	CTTTTT	C,CTTTT,CT,CTTT,CTTTTTT	4231.49	PASS	AC=1,0,0,0,0;AF=0.33,0.216,0.068,0.011,0.011;AN=2;DP=9341;set=Intersection	GT:DP:GQ:SB	0/1:152:99:25,48,32,47
chr2	5840461	.	A	G	2693.71	PASS	AC=1;AF=0.5;AN=2;DP=965;FractionInformativeReads=1;MQ=60;set=variant10-variant15-variant20-variant25-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,71:133:99:1902,0,1799:39,23,47,24
chr2	5840552	.	CA	CAA,C	2320.18	PASS	AC=1,0;AF=0.32,0.18;AN=2;DP=6902;set=variant-variant2-variant3-variant7-variant9-filterInvariant11-filterInvariant13-variant16-variant18-variant21-filterInvariant22-variant23-filterInvariant24-variant26-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-variant33-variant36-variant37-variant38-filterInvariant40-variant41	GT:DP:GQ:SB	0/1:189:99:55,60,42,32
chr2	5840564	.	AAAG	A	2107.07	PASS	AC=1;AF=0.5;AN=2;DP=3180;set=variant8-variant10-variant15-variant17-variant20-variant25-variant27-variant32-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:133,81:214:99:1451,0,4819:70,63,38,43
chr2	6114738	.	G	A	331.14	PASS	AC=2;AF=0.528;AN=2;DP=406;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant9-variant12-variant16-variant17-variant19-variant24-variant25-variant28-variant31-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:859,66,0:0,0,19,3
chr2	6790537	.	A	G	3095.41	PASS	AC=1;AF=0.643;AN=2;DP=3571;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,54:114:99:1444,0,1664:25,35,25,29
chr2	6988669	.	T	C	2683.49	PASS	AC=2;AF=0.791;AN=2;DP=2950;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2204,183,0:0,0,33,28
chr2	7001233	.	ACG	A	1563.96	PASS	AC=2;AF=0.989;AN=2;DP=1308;MQRankSum=1.085;ReadPosRankSum=2.275;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:39:542,39,0:0,0,9,2
chr2	7001249	.	ACACACACACC	A	780.38	PASS	AC=2;AF=0.917;AN=2;DP=1536;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:721,54,0:0,0,14,4
chr2	7003879	.	G	A	587.07	PASS	AC=2;AF=1;AN=2;DP=480;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:234,21,0:0,0,2,5
chr2	7005069	.	C	T	3129.09	PASS	AC=2;AF=0.989;AN=2;DP=5514;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3847,372,0:0,0,79,45
chr2	7005369	.	A	G	4581.57	PASS	AC=2;AF=1;AN=2;DP=7405;FS=0;MQ=60;MQRankSum=1.665;ReadPosRankSum=0.977;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:4811,483,0:0,0,80,81
chr2	7005992	.	C	T	7007.48	PASS	AC=2;AF=0.989;AN=2;DP=10448;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,234:234:99:6655,696,0:0,0,106,128
chr2	7017903	.	A	G	2527.57	PASS	AC=2;AF=0.989;AN=2;DP=4289;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3742,342,0:0,0,66,48
chr2	7019079	.	A	G	1699.81	PASS	AC=2;AF=0.989;AN=2;DP=3337;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2116,210,0:0,0,35,35
chr2	7027323	.	T	A	2025.83	PASS	AC=2;AF=0.837;AN=2;DP=4033;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2505,237,0:0,0,27,52
chr2	7036472	.	A	T	3018.04	PASS	AC=2;AF=0.744;AN=2;DP=7660;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:7074,616,0:0,0,96,110
chr2	7036663	.	C	CTT,CT	3445.28	PASS	AC=1,1;AF=0.487,0.256;AN=2;DP=10285;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:184:99:6,7,57,114
chr2	7036678	.	C	T	4403.17	PASS	AC=2;AF=0.744;AN=2;DP=8534;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,190:192:99:8164,565,0:2,0,64,126
chr2	7036811	.	C	T	944.51	PASS	AC=2;AF=0.711;AN=2;DP=2599;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1814,161,0:0,0,18,36
chr2	7036838	.	G	C	766.93	PASS	AC=2;AF=0.711;AN=2;DP=2464;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1442,132,0:0,0,17,27
chr2	7037067	.	G	T	748.35	PASS	AC=2;AF=0.744;AN=2;DP=2378;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:2211,150,0:0,0,29,19
chr2	7037068	.	C	T	748.35	PASS	AC=2;AF=0.744;AN=2;DP=2392;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2211,150,0:0,0,30,20
chr2	7037174	.	A	T	907.38	PASS	AC=2;AF=0.744;AN=2;DP=2877;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2401,219,0:0,0,38,35
chr2	7038125	.	CAA	CA,CAAA,C,CAAAA,CAAAAA	271.14	PASS	AC=1,0,0,0,0;AF=0.3,0.129,0.029,0.057,0.014;AN=2;DP=3500;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-filterInvariant23-filterInvariant26-variant27-variant28-variant29-variant32-filterInvariant33-variant34-variant35-variant38-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:64:99:27,10,23,4
chr2	7038429	.	A	C	120.73	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant16-variant28-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:141,0,127:0,4,0,4
chr2	7046272	.	TACACACACACACACACAC	T,TACACACACACACACAC,TACACACACACAC,TACACACACAC,TACACACACACACAC,TACACAC	792.35	PASS	AC=0,1,0,0,1,0;AF=0.221,0.105,0.279,0.012,0.244,0.012;AN=2;DP=1082;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	5/2:13:99:1,0,11,1
chr2	7050426	.	G	C	2854.17	PASS	AC=1;AF=0.635;AN=2;DP=2844;set=variant5-variant6-variant9-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,46:81:99:1257,0,947:19,16,23,23
chr2	7050483	.	ATGTGTGTG	A,ATGTGTGTGTGTGTG,ATGTGTGTGTGTG,ATGTGTG,ATGTGTGTGTGTGTGTG,ATGTGTGTGTG	925.59	PASS	AC=0,1,0,0,0,0;AF=0.202,0.31,0.012,0.06,0.036,0.06;AN=2;DP=2728;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-filterInvariant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:25:99:2,10,2,11
chr2	7076975	.	AGTGT	AGTGTGTGTGTGTGTGT,AGTGTGTGT,AGTGTGT,AGTGTGTGTGTGTGT,AGTGTGTGTGT,AGT,A,AGTGTGTGTGTGT	652.93	PASS	AC=0,0,0,0,0,0,0,1;AF=0.036,0.298,0.226,0.071,0.143,0.012,0.012,0.012;AN=2;DP=1412;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/8:35:99:11,9,11,4
chr2	7130554	.	CACACACACACACAG	C	116.71	PASS	AC=1;AF=0.563;AN=2;DP=90;set=variant14-variant16-variant19-variant22-variant24-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:107,0,593:0,5,0,3
chr2	7137067	.	A	G	2900.61	PASS	AC=1;AF=0.817;AN=2;DP=3978;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,46:102:99:1006,0,1375:28,28,25,21
chr2	7137317	.	G	A	695.64	PASS	AC=1;AF=0.571;AN=2;DP=1200;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:425,0,352:5,9,5,12
chr2	7154632	.	T	C	4003.83	PASS	AC=2;AF=1;AN=2;DP=7006;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5158,532,0:0,0,102,76
chr2	7164578	.	A	G	847.52	PASS	AC=1;AF=0.574;AN=2;DP=2471;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,43:93:99:1082,0,1203:27,23,24,19
chr2	7164746	.	C	G	706.27	PASS	AC=1;AF=0.574;AN=2;DP=1420;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:562,0,456:4,12,5,13
chr2	7164812	.	C	G	329.64	PASS	AC=1;AF=0.56;AN=2;DP=471;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:187,0,111:0,4,0,5
chr2	7170388	.	CTGTGTGTGTGTGTGTG	CTGTGTGTGTG,CTGTG,CTGTGTGTGTGTGTGTGTGTGTG,CTGTGTGTG,CTGTGTG,C,CTGTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTG,CTGTGTGTGTGTGTG,CTGTGTGTGTGTG,CTGTGTGTGTGTGTGTGTGTGTGTGTG	409.88	PASS	AC=1,0,0,0,0,0,0,0,0,0,0;AF=0.282,0.09,0.038,0.077,0.038,0.038,0.064,0.038,0.026,0.013,0.013;AN=2;DP=3138;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:28:99:3,14,5,6
chr2	7181486	.	A	G	7096.89	PASS	AC=1;AF=0.605;AN=2;DP=16726;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:230,213:443:99:5025,0,6039:107,123,106,107
chr2	7181560	.	G	A	5127.35	PASS	AC=1;AF=0.569;AN=2;DP=11245;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant18-variant20-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:192,223:415:99:5276,0,4718:84,108,99,124
chr2	7182177	.	G	A	1318.95	PASS	AC=1;AF=0.641;AN=2;DP=3036;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:906,0,945:19,12,14,17
chr2	7208060	.	C	A	412.63	PASS	AC=1;AF=0.603;AN=2;DP=832;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:257,0,329:8,2,7,3
chr2	7243449	.	AGTGTGTGT	AGT,AGTGT,AGTGTGT,AGTGTGTGTGT,A	1057.25	PASS	AC=1,0,0,0,0;AF=0.593,0.186,0.035,0.012,0.012;AN=2;DP=3079;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:64:99:16,12,24,12
chr2	7403641	.	TACACACACAC	TACACACACACACACAC,TACACACACACAC,TACACACACACACAC,T,TACACACACACACACACAC	643.8	PASS	AC=0,1,0,0,0;AF=0.293,0.451,0.049,0.012,0.012;AN=2;DP=2256;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:37:99:14,9,9,5
chr2	7409989	.	TTGTG	TTG,T	753.33	PASS	AC=2,0;AF=0.611,0.014;AN=2;DP=3332;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:54:99:0,0,14,40
chr2	7421557	.	C	G	466.05	PASS	AC=2;AF=0.768;AN=2;DP=1139;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:945,69,0:0,0,22,1
chr2	7421778	.	A	T	1208.99	PASS	AC=1;AF=0.6;AN=2;DP=2152;MQ=60;set=variant2-variant5-variant6-variant8-variant12-variant13-variant16-variant18-variant21-variant22-variant24-variant26-variant28-variant31-variant34-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,46:107:99:1139,0,1441:25,36,16,30
chr2	7421860	.	A	T	375.7	PASS	AC=1;AF=0.6;AN=2;DP=475;MQ=60;set=variant2-variant5-variant6-variant8-variant12-variant13-variant16-variant18-variant21-variant22-variant24-variant26-variant28-variant31-variant34-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:429,0,363:1,9,0,11
chr2	7471480	.	TCACA	TCA,TCTCACACA,TCACACACACACACA,TCACACACACA,TCACACACACACA,TCACACA,TCTCACACACACA,T,TCACACACA	47.12	PASS	AC=0,0,0,1,0,1,0,0,0;AF=0.053,0.132,0.013,0.053,0.211,0.066,0.026,0.013,0.039;AN=2;DP=1224;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-filterInvariant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	6/4:38:99:3,4,24,7
chr2	7540646	.	C	CA	1654.92	PASS	AC=2;AF=0.725;AN=2;DP=3824;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3086,262,0:0,0,41,46
chr2	7540695	.	C	G	1058.37	PASS	AC=2;AF=0.689;AN=2;DP=3078;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:1943,203,0:0,0,29,39
chr2	7540784	.	T	C	347.26	PASS	AC=2;AF=0.689;AN=2;DP=723;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:480,42,0:0,0,4,10
chr2	8178735	.	A	G	2276.57	PASS	AC=2;AF=0.803;AN=2;DP=3055;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2541,258,0:0,0,43,43
chr2	8178798	.	C	T	2261.21	PASS	AC=2;AF=0.743;AN=2;DP=2291;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2116,206,0:0,0,26,43
chr2	8819143	.	GCCA	G	3553.68	PASS	AC=2;AF=0.909;AN=2;DP=4812;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:4791,346,0:0,0,70,45
chr2	8822892	.	CAAAAAAAAAAAA	CAAAAAAAAAAA,CAAAAAAAAA,C,CAAAAAAAAAA	293.77	PASS	AC=0,0,0,1;AF=0.278,0.139,0.083,0.028;AN=2;DP=1589;set=variant-filterInvariant2-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/4:38:99:12,7,14,5
chr2	8822912	.	A	C,AC	1749.96	PASS	AC=2,0;AF=0.891,0.016;AN=2;DP=1874;set=variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:67:99:4,0,40,23
chr2	8824657	.	G	GC,GCC	552.55	PASS	AC=2,0;AF=0.467,0.067;AN=2;DP=527;set=variant-variant4-filterInvariant5-variant12-variant16-variant20-variant22-variant25-variant26-variant30-variant33-variant34-variant38-variant40-variant41	GT:DP:GQ:SB	1/1:19:17:0,2,0,17
chr2	8824669	.	A	C	909.93	PASS	AC=2;AF=0.611;AN=2;DP=987;set=variant-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:754,66,0:0,0,0,22
chr2	8870814	.	A	G	3155.51	PASS	AC=2;AF=0.989;AN=2;DP=3763;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3228,288,0:0,0,42,53
chr2	8877042	.	G	A	1088.45	PASS	AC=1;AF=0.5;AN=2;DP=793;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant10-variant24-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1232,0,1312:30,24,29,21
chr2	8887180	.	A	G	727.11	PASS	AC=1;AF=0.5;AN=2;DP=1042;MQ=60;set=variant-variant2-variant8-variant10-variant12-variant24-variant25-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,34:89:99:725,0,1273:32,23,20,14
chr2	8887426	.	A	G	316.58	PASS	AC=1;AF=0.538;AN=2;DP=372;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant10-variant12-variant24-variant25-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:259,0,429:4,11,2,8
chr2	8887910	.	A	T	68.21	PASS	AC=1;AF=0.639;AN=2;DP=496;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:181,0,325:8,2,5,1
chr2	8910987	.	A	T	1260.94	PASS	AC=2;AF=1;AN=2;DP=2385;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2132,204,0:0,0,22,46
chr2	8911010	.	T	C	427	PASS	AC=1;AF=0.649;AN=2;DP=1421;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,29:49:99:747,0,492:7,13,9,20
chr2	8916847	.	A	T	1863.52	PASS	AC=2;AF=0.989;AN=2;DP=2353;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1493,126,0:0,0,31,11
chr2	8929917	.	G	T	43.48	PASS	AC=2;AF=0.75;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.231;ReadPosRankSum=-1.231;set=variant-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:87,6,0:0,0,2,0
chr2	8943291	.	G	A	413.33	PASS	AC=2;AF=1;AN=2;DP=528;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:265,30,0:0,0,3,7
chr2	8995009	.	T	C	3903.44	PASS	AC=1;AF=0.5;AN=2;DP=280;FS=5.749;FractionInformativeReads=1;MQ=60;MQRankSum=-0.649;QD=13.94;ReadPosRankSum=-3.041;SOR=1.009;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:129,151:280:99:3932,0,3122:77,52,100,51
chr2	8996728	.	A	G	862.65	PASS	AC=2;AF=0.771;AN=2;DP=1405;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1267,102,0:0,0,7,27
chr2	8998624	.	A	G	3363.17	PASS	AC=2;AF=0.989;AN=2;DP=4547;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2923,288,0:0,0,51,45
chr2	9419411	.	G	A	4421.13	PASS	AC=2;AF=0.833;AN=2;DP=3845;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2529,228,0:0,0,50,26
chr2	9458460	.	A	G	64.25	PASS	AC=2;AF=0.6;AN=2;DP=343;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant13-variant16-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant29-variant30-variant31-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:697,51,0:0,0,16,1
chr2	9460234	.	G	A	356.59	PASS	AC=2;AF=0.591;AN=2;DP=166;FractionInformativeReads=1;MQ=60;set=variant4-variant13-variant16-variant18-variant21-variant26-variant29-variant30-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:425,39,0:0,0,9,4
chr2	9467815	.	C	T	304.53	PASS	AC=2;AF=0.6;AN=2;DP=670;FractionInformativeReads=1;MQ=60;set=variant4-variant12-variant13-variant16-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant29-variant30-variant31-variant36-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1344,108,0:0,0,29,7
chr2	9475337	.	A	G	1230.82	PASS	AC=2;AF=0.545;AN=2;DP=1166;MQ=60;set=variant4-variant13-variant16-variant18-variant21-variant26-variant29-variant30-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3131,296,0:0,0,37,62
chr2	9484542	.	C	T	546.22	PASS	AC=2;AF=0.977;AN=2;DP=565;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:660,51,0:0,0,14,3
chr2	9484561	.	TAAAA	T	1042.73	PASS	AC=2;AF=0.977;AN=2;DP=816;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:937,63,0:0,0,18,3
chr2	9491017	.	C	T	2381.6	PASS	AC=2;AF=0.989;AN=2;DP=2480;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1818,150,0:0,0,13,37
chr2	9496291	.	T	C	2164.62	PASS	AC=1;AF=0.765;AN=2;DP=5651;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,101:178:99:2531,0,1934:33,44,47,54
chr2	9514917	.	C	T	568.03	PASS	AC=1;AF=0.575;AN=2;DP=1093;MQ=60;set=variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant22-variant24-variant25-variant27-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:459,0,585:14,9,12,9
chr2	9515099	.	TA	T,TAA	46.9	PASS	AC=1,0;AF=0.286,0.286;AN=2;DP=256;MQ=60;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant19-filterInvariant32-variant39-filterInvariant41	GT:DP:GQ:SB	0/1:20:82:4,10,2,4
chr2	9546030	.	C	T	7208.38	PASS	AC=2;AF=0.86;AN=2;DP=8706;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,183:184:99:5654,540,0:1,0,78,105
chr2	9546208	.	G	A	271.41	PASS	AC=2;AF=0.583;AN=2;DP=334;set=variant2-variant4-variant7-variant11-variant12-variant13-variant15-variant16-variant20-variant22-variant26-variant28-variant29-variant30-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1055,84,0:0,0,9,19
chr2	9546245	.	C	A	100.75	PASS	AC=2;AF=0.694;AN=2;DP=196;set=variant2-variant12-variant15-variant16-variant17-variant20-variant22-variant23-variant26-variant28-variant29-variant30-variant33-variant34-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,10:11:31:457,31,0:1,0,1,9
chr2	9546690	.	C	T	2110.25	PASS	AC=2;AF=0.654;AN=2;DP=2686;set=variant2-variant4-variant6-variant15-variant16-variant21-variant26-variant28-variant29-variant33-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,199:199:99:6274,594,0:0,0,126,73
chr2	9546805	.	C	T	5240.15	PASS	AC=1;AF=0.528;AN=2;DP=7637;set=variant2-variant4-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:206,208:414:99:5231,0,4978:111,95,106,102
chr2	9547171	.	G	A	1276.48	PASS	AC=2;AF=0.712;AN=2;DP=5126;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5362,499,0:0,0,62,105
chr2	9547363	.	C	A	503.63	PASS	AC=2;AF=0.735;AN=2;DP=1741;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1544,129,0:0,0,27,16
chr2	9548026	.	T	TG	168.17	PASS	AC=2;AF=0.75;AN=2;DP=319;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:375,39,0:0,0,12,1
chr2	9552379	.	C	T	312.44	PASS	AC=1;AF=0.611;AN=2;DP=641;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant27-variant31-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,4:18:99:126,0,693:8,6,3,1
chr2	9552383	.	A	AT	512.81	PASS	AC=1;AF=0.611;AN=2;DP=685;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant27-variant31-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,4:17:99:126,0,693:8,5,3,1
chr2	9554075	.	T	G	235.3	PASS	AC=2;AF=0.788;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:228,18,0:0,0,6,0
chr2	9554255	.	G	A	2727.78	PASS	AC=2;AF=0.77;AN=2;DP=2897;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2035,192,0:0,0,37,27
chr2	9554280	.	A	T	1042.97	PASS	AC=1;AF=0.611;AN=2;DP=2457;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant27-variant31-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,39:82:99:1008,0,1021:24,19,22,17
chr2	9554461	.	C	A	1971.01	PASS	AC=2;AF=0.764;AN=2;DP=1925;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1296,129,0:0,0,17,26
chr2	9558905	.	CTT	CTTT,CT,C	62.37	PASS	AC=1,0,0;AF=0.216,0.284,0.014;AN=2;DP=2378;set=filterInvariant-variant2-filterInvariant3-variant4-filterInvariant5-variant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant18-filterInvariant19-variant21-variant22-variant23-variant26-variant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-variant34-variant36-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:34:99:4,17,2,11
chr2	9560346	.	A	G	49.73	PASS	AC=2;AF=0.75;AN=2;DP=44;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant15-variant16-variant20-variant26-variant28-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:94,9,0:0,0,1,2
chr2	9563307	.	CGT	C	1852.79	PASS	AC=2;AF=0.764;AN=2;DP=1363;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1485,99,0:0,0,12,21
chr2	9564196	.	G	GA	475.55	PASS	AC=1;AF=0.611;AN=2;DP=1666;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant27-variant31-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:620,0,640:13,16,15,13
chr2	9564534	.	C	T	547.71	PASS	AC=1;AF=0.567;AN=2;DP=755;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:635,0,780:16,7,16,6
chr2	9564823	.	T	C	1281.13	PASS	AC=1;AF=0.567;AN=2;DP=1770;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,74:136:99:2068,0,1619:24,38,25,49
chr2	9565123	.	A	G	359.61	PASS	AC=2;AF=0.767;AN=2;DP=231;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:271,21,0:0,0,2,5
chr2	9569972	.	A	T	2304.29	PASS	AC=2;AF=0.764;AN=2;DP=3059;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2957,288,0:0,0,63,34
chr2	9571054	.	C	T	939.86	PASS	AC=2;AF=0.764;AN=2;DP=843;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:862,72,0:0,0,5,19
chr2	9572888	.	A	T	93.19	PASS	AC=1;AF=0.654;AN=2;DP=433;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant27-variant31-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:245,0,348:6,10,1,7
chr2	9572928	.	C	T	54.21	PASS	AC=1;AF=0.66;AN=2;DP=250;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant22-variant24-variant25-variant27-variant31-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:222,0,316:2,8,0,6
chr2	9576553	.	T	C	450.21	PASS	AC=2;AF=0.764;AN=2;DP=833;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:705,60,0:0,0,4,16
chr2	9580540	.	G	GT	995.05	PASS	AC=2;AF=0.764;AN=2;DP=1060;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,30:31:84:1057,84,0:1,0,26,4
chr2	9583822	.	A	AG	1997.13	PASS	AC=1;AF=0.567;AN=2;DP=2197;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,57:130:99:1509,0,2073:25,48,22,35
chr2	9583922	.	A	G	930.55	PASS	AC=2;AF=0.75;AN=2;DP=1465;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1511,132,0:0,0,11,33
chr2	9597276	.	ATGTGTGTGTGTGTG	ATGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTG,ATGTGTGTGTG,A,ATGTGTGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTGTG	70.13	PASS	AC=2,0,0,0,0,0,0,0,0;AF=0.21,0.081,0.113,0.129,0.016,0.016,0.016,0.016,0.016;AN=2;DP=1176;set=variant-variant2-variant3-variant6-variant9-filterInvariant10-variant13-variant14-variant15-filterInvariant16-variant18-variant19-filterInvariant20-variant21-variant25-variant26-variant28-filterInvariant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:11:5:0,1,2,8
chr2	9601418	.	G	A	690.73	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.383;QD=9.09;ReadPosRankSum=-1.698;SOR=0.62;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,33:76:99:719,0,1042:20,23,16,17
chr2	9613289	.	T	C	4877.43	PASS	AC=2;AF=0.75;AN=2;DP=5950;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4425,438,0:0,0,54,92
chr2	9613328	.	G	A	3117.63	PASS	AC=2;AF=0.736;AN=2;DP=3685;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2528,238,0:0,0,23,57
chr2	9614523	.	G	A	1284.69	PASS	AC=2;AF=0.768;AN=2;DP=5127;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:3521,384,0:0,0,72,57
chr2	9614667	.	GGCCCC	GGCCCCGCCCC,G	2347.45	PASS	AC=1,0;AF=0.528,0.028;AN=2;DP=2427;set=variant2-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant26-variant27-variant28-variant29-variant30-variant34-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:99:99:26,25,25,23
chr2	9615344	.	C	G	1553.83	PASS	AC=1;AF=0.5;AN=2;DP=143;FS=1.315;FractionInformativeReads=1;MQ=60;MQRankSum=0.418;QD=10.87;ReadPosRankSum=2.309;SOR=0.734;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:74,69:143:99:1582,0,1764:36,38,36,33
chr2	9615556	.	T	C	903.83	PASS	AC=2;AF=0.75;AN=2;DP=652;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:856,63,0:0,0,3,18
chr2	9616035	.	A	G	1290.19	PASS	AC=2;AF=0.729;AN=2;DP=947;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:723,66,0:0,0,13,9
chr2	9616301	.	TAGG	T	453.73	PASS	AC=2;AF=0.758;AN=2;DP=483;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:737,51,0:0,0,6,11
chr2	9624794	.	T	A	358.73	PASS	AC=2;AF=0.636;AN=2;DP=1284;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1226,102,0:0,0,11,23
chr2	9629286	.	T	TTTG	8638.76	PASS	AC=1;AF=0.565;AN=2;DP=3921;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant22-variant24-variant25-variant27-variant35-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,85:134:99:2027,0,915:24,25,39,46
chr2	9629298	.	G	GTTC	2253.18	PASS	AC=1;AF=0.571;AN=2;DP=2235;MQ=60;set=variant2-variant11-variant12-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,48:138:99:904,0,2177:41,49,23,25
chr2	9629367	.	T	G	799.48	PASS	AC=2;AF=0.632;AN=2;DP=3425;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2968,275,0:0,0,36,56
chr2	9629388	.	ATTTT	ATTT,AT,ATT,ATTTTT,A	126.61	PASS	AC=0,0,1,0,1;AF=0.242,0.161,0.194,0.016,0.016;AN=2;DP=2100;set=filterInvariant-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-filterInvariant23-variant26-variant27-variant28-variant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-variant37-filterInvariant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	5/3:30:99:5,4,7,14
chr2	9629731	.	T	C	616.53	PASS	AC=1;AF=0.567;AN=2;DP=666;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant12-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:411,0,529:10,10,9,8
chr2	9629854	.	CAAAAAAA	CAAAAAAAA,CAA,CA,CAAAAAA,CAAAA,CAAAAA,CAAA,C	302.13	PASS	AC=0,0,0,0,0,0,1,0;AF=0.014,0.111,0.069,0.083,0.097,0.111,0.111,0.028;AN=2;DP=4219;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/7:68:99:6,10,45,7
chr2	9629943	.	T	TA	2214.74	PASS	AC=2;AF=0.708;AN=2;DP=8063;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,219:222:99:6129,583,0:1,2,118,101
chr2	9630016	.	T	C	3563.01	PASS	AC=2;AF=0.636;AN=2;DP=8713;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,270:270:99:8130,809,0:0,0,131,139
chr2	9630231	.	C	T	1895.97	PASS	AC=2;AF=0.722;AN=2;DP=6557;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5596,511,0:0,0,71,99
chr2	9630244	.	AT	A	2188.41	PASS	AC=2;AF=0.708;AN=2;DP=6303;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:6026,509,0:0,0,70,99
chr2	9631340	.	T	C	412.38	PASS	AC=2;AF=0.636;AN=2;DP=1646;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1365,135,0:0,0,17,28
chr2	9633137	.	T	G	848.43	PASS	AC=2;AF=0.722;AN=2;DP=3408;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3017,297,0:0,0,46,53
chr2	9634856	.	A	G	1017.85	PASS	AC=2;AF=0.722;AN=2;DP=2746;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1412,138,0:0,0,23,23
chr2	9637403	.	A	G	983.12	PASS	AC=1;AF=0.567;AN=2;DP=1546;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,53:108:99:1299,0,1279:23,32,22,31
chr2	9642478	.	C	T	129.74	PASS	AC=2;AF=0.641;AN=2;DP=541;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:440,30,0:0,0,0,10
chr2	9642521	.	C	T	193.54	PASS	AC=1;AF=0.611;AN=2;DP=157;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant17-variant18-variant22-variant24-variant25-variant27-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:117,0,114:0,3,0,3
chr2	9650350	.	C	CATAA	753.27	PASS	AC=2;AF=0.632;AN=2;DP=2289;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:3195,216,0:0,0,25,47
chr2	9661184	.	T	C	344.88	PASS	AC=2;AF=0.764;AN=2;DP=652;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:880,66,0:0,0,20,2
chr2	9661775	.	G	A	1034.87	PASS	AC=1;AF=0.563;AN=2;DP=1605;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,42:107:99:962,0,1635:39,26,27,15
chr2	9661801	.	G	T	1497.05	PASS	AC=1;AF=0.567;AN=2;DP=1841;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,52:139:99:1132,0,2060:51,36,34,18
chr2	9661969	.	T	TCTTCCCTGCCTGCCTGCCTGCCTGCCTGCCTGC,TCTTCCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGC,TCTTCCCTGCCTGCCTGCCTGCCTGCCTGC,TCTTCCCTGC,TCTTCCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGC,TCTTCCCTGCCTGCCTGCCTGCCTGC	3020.68	PASS	AC=0,0,1,0,0,0;AF=0.261,0.087,0.152,0.087,0.022,0.022;AN=2;DP=1452;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant22-variant24-variant25-variant27-variant34-variant35-variant37-variant38-variant39-variant41-variant42	GT:DP:GQ:SB	0/3:41:99:11,12,8,10
chr2	9661970	.	C	CT	1293.69	PASS	AC=1;AF=0.559;AN=2;DP=1159;set=variant2-variant3-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:903,0,879:12,11,11,12
chr2	9661972	.	G	C	1302.74	PASS	AC=1;AF=0.559;AN=2;DP=1123;set=variant2-variant3-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:903,0,879:12,10,11,12
chr2	9662210	.	G	A	4177.25	PASS	AC=2;AF=0.764;AN=2;DP=10437;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,276:277:99:8896,820,0:1,0,162,114
chr2	9662410	.	T	C	10524.8	PASS	AC=1;AF=0.571;AN=2;DP=5701;MQ=60;set=variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant22-variant24-variant25-variant27-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:129,127:256:99:3360,0,3367:58,71,52,75
chr2	9667751	.	T	C	130.7	PASS	AC=1;AF=0.607;AN=2;DP=180;FractionInformativeReads=1;MQ=60;set=variant2-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:105,0,263:7,0,3,0
chr2	9695888	.	G	T	930.08	PASS	AC=1;AF=0.567;AN=2;DP=1278;MQ=60;set=variant2-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant28-variant29-variant30-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,35:81:99:839,0,1100:18,28,13,22
chr2	9695906	.	A	G	617.1	PASS	AC=2;AF=0.77;AN=2;DP=2762;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,65:66:99:2038,187,0:0,1,25,40
chr2	9771200	.	C	G	1243.13	PASS	AC=1;AF=0.574;AN=2;DP=2822;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,51:95:99:1261,0,1072:22,22,23,28
chr2	9974048	.	C	G	93.22	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.72;QD=15.54;ReadPosRankSum=1.38;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:31:121,0,31:1,1,2,2
chr2	9983355	.	G	C	736.38	PASS	AC=1;AF=0.5;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant5-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:703,0,1075:28,6,19,5
chr2	9983591	.	A	AG	4401.86	PASS	AC=2;AF=1;AN=2;DP=6523;FS=0;MQ=60;MQRankSum=-1.241;ReadPosRankSum=-1.05;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:4510,364,0:0,0,49,72
chr2	9983686	.	G	T	909.1	PASS	AC=2;AF=0.691;AN=2;DP=2742;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1722,181,0:0,0,21,41
chr2	9983716	.	A	C	1572.85	PASS	AC=2;AF=1;AN=2;DP=2726;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1543,149,0:0,0,18,32
chr2	9991556	.	G	A	528.24	PASS	AC=2;AF=1;AN=2;DP=538;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.935;ReadPosRankSum=0.668;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:341,27,0:0,0,8,1
chr2	10044951	.	A	G	1450.72	PASS	AC=2;AF=0.6;AN=2;DP=1620;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant9-variant11-variant13-variant17-variant21-variant26-variant27-variant33-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2208,222,0:0,0,45,29
chr2	10045014	.	C	T	6504.81	PASS	AC=2;AF=0.895;AN=2;DP=5567;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:5319,364,0:0,0,64,54
chr2	10045024	.	G	A	6831.91	PASS	AC=2;AF=1;AN=2;DP=5920;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:5351,370,0:0,0,64,57
chr2	10045147	.	A	G	2799.69	PASS	AC=2;AF=1;AN=2;DP=3272;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2345,209,0:0,0,19,51
chr2	10059097	.	A	C	2741.25	PASS	AC=2;AF=0.672;AN=2;DP=4319;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant17-variant18-variant21-variant23-variant24-variant26-variant27-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4369,416,0:0,0,69,70
chr2	10092933	.	CTTAG	C	157.73	PASS	AC=1;AF=0.5;AN=2;DP=223;MQ=60;set=variant-variant10-variant14-variant17-variant20-variant22-variant23-variant29-variant30-variant32-variant33-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:264,0,591:9,1,7,0
chr2	10094992	.	A	G	755.96	PASS	AC=2;AF=0.667;AN=2;DP=2479;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2067,186,0:0,0,42,20
chr2	10095185	.	T	C	1504.11	PASS	AC=1;AF=0.531;AN=2;DP=2524;MQ=60;set=variant-variant6-variant10-variant14-variant17-variant20-variant22-variant23-variant29-variant30-variant32-variant33-variant34-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,74:147:99:1972,0,1982:33,40,34,40
chr2	10095374	.	C	T	694.39	PASS	AC=1;AF=0.5;AN=2;DP=1155;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant26-variant27-variant32-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,39:69:99:1030,0,938:5,25,13,26
chr2	10101128	.	A	G	260.83	PASS	AC=1;AF=0.5;AN=2;DP=85;FractionInformativeReads=1;MQ=60;set=variant6-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:573,0,526:14,3,12,5
chr2	10101468	.	A	G	914.84	PASS	AC=1;AF=0.531;AN=2;DP=2058;MQ=60;set=variant-variant6-variant10-variant14-variant17-variant20-variant22-variant23-variant29-variant30-variant32-variant33-variant34-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,50:113:99:1198,0,1463:31,32,20,30
chr2	10105535	.	T	C	874.87	PASS	AC=1;AF=0.531;AN=2;DP=1542;MQ=60;set=variant-variant6-variant10-variant14-variant17-variant20-variant22-variant23-variant29-variant30-variant32-variant33-variant34-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,59:107:99:1481,0,1278:18,30,25,34
chr2	10105584	.	A	AT	240.59	PASS	AC=1;AF=0.531;AN=2;DP=849;MQ=60;set=variant-variant6-variant10-variant14-variant17-variant20-variant22-variant23-variant29-variant30-variant32-variant33-variant34-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:487,0,563:6,22,9,18
chr2	10105644	.	T	C	241.03	PASS	AC=1;AF=0.533;AN=2;DP=251;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant10-variant14-variant17-variant20-variant22-variant23-variant29-variant30-variant32-variant33-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:374,0,448:3,9,1,10
chr2	10126416	.	A	G	914.97	PASS	AC=2;AF=0.641;AN=2;DP=1138;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1381,126,0:0,0,12,30
chr2	10133728	.	T	C	1609.22	PASS	AC=1;AF=0.5;AN=2;DP=2058;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant26-variant27-variant32-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,52:112:99:1221,0,1504:30,30,24,28
chr2	10133820	.	C	T	840.02	PASS	AC=1;AF=0.5;AN=2;DP=1057;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant26-variant27-variant32-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,18:49:99:497,0,879:10,21,6,12
chr2	10135855	.	T	C	328.54	PASS	AC=1;AF=0.5;AN=2;DP=466;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant26-variant27-variant32-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:311,0,266:8,1,8,3
chr2	10135956	.	G	A	1134.61	PASS	AC=1;AF=0.5;AN=2;DP=1712;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant26-variant27-variant32-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,36:76:99:1055,0,1079:26,14,23,13
chr2	10139007	.	C	CAT	142.73	PASS	AC=2;AF=1;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;QD=30.03;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,1,3
chr2	10139017	.	C	CAT	39	PASS	AC=2;AF=0.75;AN=2;DP=19;FractionInformativeReads=1;MQ=60;MQRankSum=0.423;ReadPosRankSum=-0.592;set=variant28-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:21:281,21,0:0,0,3,3
chr2	10140651	.	A	G	3890.93	PASS	AC=1;AF=0.558;AN=2;DP=4095;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant24-variant26-variant27-variant29-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,86:158:99:2120,0,1725:42,30,46,40
chr2	10140981	.	C	T	4805.11	PASS	AC=1;AF=0.558;AN=2;DP=4041;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant24-variant26-variant27-variant29-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,60:116:99:1446,0,1464:28,28,30,30
chr2	10141191	.	G	A	2445.5	PASS	AC=1;AF=0.558;AN=2;DP=1991;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant24-variant26-variant27-variant29-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:653,0,1038:16,15,15,10
chr2	10142073	.	T	C	3015.14	PASS	AC=2;AF=0.641;AN=2;DP=7162;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,243:243:99:8100,728,0:0,0,99,144
chr2	10142302	.	G	A	6165.71	PASS	AC=1;AF=0.558;AN=2;DP=6111;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant24-variant26-variant27-variant29-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:142,93:235:99:2314,0,3884:51,91,31,62
chr2	10142331	.	C	T	4271.47	PASS	AC=1;AF=0.558;AN=2;DP=4220;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant23-variant24-variant26-variant27-variant29-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:95,58:153:99:1596,0,2739:28,67,15,43
chr2	10188649	.	A	T	3261.47	PASS	AC=2;AF=0.795;AN=2;DP=10112;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,210:210:99:6681,629,0:0,0,92,118
chr2	10192851	.	G	GTT,GT	1187.32	PASS	AC=2,0;AF=0.635,0.081;AN=2;DP=2736;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:51:99:0,0,25,26
chr2	10194192	.	T	C	5757.97	PASS	AC=2;AF=0.795;AN=2;DP=15873;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,351:351:99:11430,1051,0:0,0,184,167
chr2	10194487	.	T	C	4029.08	PASS	AC=2;AF=0.671;AN=2;DP=13665;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,355:355:99:11620,1063,0:0,0,156,199
chr2	10197270	.	T	A	4605.42	PASS	AC=2;AF=0.795;AN=2;DP=11835;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,245:245:99:7779,734,0:0,0,89,156
chr2	10197615	.	T	C	888.89	PASS	AC=2;AF=0.795;AN=2;DP=2280;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1691,150,0:0,0,29,21
chr2	10198113	.	C	A	527.17	PASS	AC=2;AF=0.716;AN=2;DP=1523;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1391,137,0:0,0,20,26
chr2	10225241	.	C	T	1754.28	PASS	AC=2;AF=0.898;AN=2;DP=2723;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1774,144,0:0,0,38,10
chr2	10226306	.	G	GC	1385.47	PASS	AC=2;AF=0.769;AN=2;DP=3961;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3498,286,0:0,0,34,61
chr2	10262920	.	T	G	2308.65	PASS	AC=1;AF=0.798;AN=2;DP=7090;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,77:157:99:2239,0,1992:32,48,27,50
chr2	10264057	.	T	C	1115.05	PASS	AC=1;AF=0.821;AN=2;DP=3056;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:623,0,654:13,15,11,16
chr2	10270757	.	AT	ATT,A,ATTT	234.25	PASS	AC=0,0,1;AF=0.229,0.229,0.043;AN=2;DP=3616;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-filterInvariant12-filterInvariant13-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-variant22-variant23-variant24-filterInvariant26-filterInvariant27-filterInvariant32-variant33-variant34-filterInvariant36-filterInvariant37-variant38-variant39-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/3:40:99:4,23,4,9
chr2	10281903	.	G	GC	776.77	PASS	AC=2;AF=1;AN=2;DP=1960;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1351,114,0:0,0,25,13
chr2	10282147	.	T	C	1173.28	PASS	AC=1;AF=0.756;AN=2;DP=4962;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,58:96:99:1471,0,903:17,21,26,32
chr2	10332539	.	A	G	309.64	PASS	AC=1;AF=0.607;AN=2;DP=880;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:580,0,558:15,1,15,1
chr2	10332876	.	AC	A	1003.6	PASS	AC=1;AF=0.629;AN=2;DP=1556;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,29:52:99:717,0,540:12,11,16,13
chr2	10333010	.	G	A	510.54	PASS	AC=1;AF=0.588;AN=2;DP=1058;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:523,0,508:6,14,9,12
chr2	10443340	.	A	G	228.84	PASS	AC=2;AF=0.895;AN=2;DP=447;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:560,54,0:0,0,8,10
chr2	10443748	.	C	CG	3112.73	PASS	AC=2;AF=1;AN=2;DP=2760;FS=0;MQ=60;MQRankSum=1.354;ReadPosRankSum=1.354;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2778,187,0:0,0,39,23
chr2	10443756	.	G	C	3273.81	PASS	AC=2;AF=0.86;AN=2;DP=2958;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:3105,208,0:0,0,41,26
chr2	10443779	.	G	GC	4139.4	PASS	AC=2;AF=1;AN=2;DP=3645;FS=0;MQ=60;MQRankSum=-0.666;ReadPosRankSum=1.679;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:3600,241,0:0,0,48,31
chr2	10443782	.	G	GC,GT	4206.2	PASS	AC=2,0;AF=0.898,0.102;AN=2;DP=3685;FS=0;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:79:99:0,0,48,31
chr2	10443788	.	A	AG	4255.04	PASS	AC=2;AF=1;AN=2;DP=3803;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:3711,253,0:0,0,51,33
chr2	10537018	.	A	G	1236.3	PASS	AC=1;AF=0.648;AN=2;DP=3610;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,54:121:99:1325,0,1720:34,33,24,30
chr2	10548577	.	C	T	79.67	PASS	AC=1;AF=0.583;AN=2;DP=234;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant15-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:229,0,243:7,1,6,3
chr2	10548826	.	T	C	370.84	PASS	AC=1;AF=0.696;AN=2;DP=469;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:140,0,283:3,8,3,4
chr2	10567082	.	A	G	8886.26	PASS	AC=1;AF=0.798;AN=2;DP=13924;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:168,174:342:99:4196,0,3938:82,86,86,88
chr2	10580967	.	G	A	873.25	PASS	AC=1;AF=0.5;AN=2;DP=710;FractionInformativeReads=1;MQ=60;set=variant5-variant23-variant29-variant33-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,53:114:99:1254,0,1580:27,34,24,29
chr2	10584022	.	T	C	1492.17	PASS	AC=1;AF=0.5;AN=2;DP=422;MQ=60;set=variant5-variant23-variant29-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,31:81:99:803,0,1500:16,34,7,24
chr2	10585311	.	A	C	370.27	PASS	AC=1;AF=0.5;AN=2;DP=181;FractionInformativeReads=1;MQ=60;set=variant5-variant23-variant29-variant33-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:436,0,325:5,6,6,10
chr2	10587869	.	G	A	188.06	PASS	AC=1;AF=0.629;AN=2;DP=774;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:290,0,337:4,9,5,7
chr2	10588552	.	C	G	1414.45	PASS	AC=1;AF=0.622;AN=2;DP=5514;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,69:118:99:1583,0,1047:20,29,29,40
chr2	10595534	.	T	C	5516.04	PASS	AC=1;AF=0.565;AN=2;DP=3292;MQ=60;set=variant3-variant6-variant7-variant8-variant11-variant13-variant14-variant16-variant17-variant19-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,69:157:99:1674,0,2437:42,46,36,33
chr2	10711112	.	G	A	1883.2	PASS	AC=2;AF=0.571;AN=2;DP=2816;set=variant2-variant7-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant23-variant26-variant27-variant31-variant32-variant33-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3252,336,0:0,0,48,64
chr2	10711941	.	C	A	1333.18	PASS	AC=2;AF=1;AN=2;DP=2130;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,64:65:99:2173,184,0:0,1,28,36
chr2	10717806	.	C	T	1056.83	PASS	AC=2;AF=0.571;AN=2;DP=2035;MQ=60;set=variant2-variant7-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant23-variant26-variant27-variant31-variant32-variant33-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2009,210,0:0,0,38,32
chr2	10742704	.	G	A	490.37	PASS	AC=2;AF=0.571;AN=2;DP=906;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant23-variant26-variant27-variant31-variant32-variant33-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1429,135,0:0,0,29,16
chr2	10762302	.	TA	T	2916.49	PASS	AC=2;AF=1;AN=2;DP=4736;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3959,322,0:0,0,43,64
chr2	10774531	.	C	T	428.8	PASS	AC=2;AF=0.571;AN=2;DP=780;MQ=60;set=variant2-variant7-variant8-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant23-variant26-variant27-variant31-variant32-variant33-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1462,141,0:0,0,29,18
chr2	10799467	.	TGGG	T,TG,TGG,TGGGGG	194.27	PASS	AC=0,0,0,2;AF=0.379,0.362,0.017,0.034;AN=2;DP=404;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant41-variant42-variant44	GT:DP:GQ:SB	4/4:3:8:0,0,3,0
chr2	10807748	.	C	T	74.09	PASS	AC=2;AF=0.591;AN=2;DP=370;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant26-variant27-variant31-variant32-variant33-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:555,48,0:0,0,4,12
chr2	10808776	.	C	CAA	2337.18	PASS	AC=2;AF=1;AN=2;DP=1916;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1665,111,0:0,0,16,21
chr2	10813782	.	T	C	1098.41	PASS	AC=2;AF=1;AN=2;DP=1287;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1221,117,0:0,0,15,24
chr2	10861696	.	T	G	152.74	PASS	AC=2;AF=0.976;AN=2;DP=283;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:177,12,0:0,0,0,4
chr2	10908893	.	A	G	1043.01	PASS	AC=2;AF=0.6;AN=2;DP=3203;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2498,252,0:0,0,38,46
chr2	10911891	.	T	C	3299.1	PASS	AC=2;AF=0.849;AN=2;DP=4055;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3348,308,0:0,0,70,33
chr2	10915020	.	A	G	938.82	PASS	AC=2;AF=0.64;AN=2;DP=2330;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant8-variant12-variant14-variant15-variant16-variant17-variant21-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2786,270,0:0,0,51,39
chr2	10922516	.	A	C	1018.06	PASS	AC=1;AF=0.672;AN=2;DP=2425;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,52:85:99:1350,0,867:8,25,16,36
chr2	10924524	.	T	C	856.8	PASS	AC=1;AF=0.676;AN=2;DP=2807;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:979,0,1422:25,26,18,21
chr2	10924686	.	CT	C	2506.4	PASS	AC=1;AF=0.667;AN=2;DP=4597;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,62:134:99:1914,0,2288:39,33,31,31
chr2	10927345	.	T	C	202.79	PASS	AC=1;AF=0.596;AN=2;DP=725;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant20-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:332,0,347:10,6,9,3
chr2	10928694	.	GA	GAAA,GAA,G	359.04	PASS	AC=0,1,0;AF=0.214,0.329,0.057;AN=2;DP=1502;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:46:99:13,9,14,10
chr2	10928710	.	A	C	553.49	PASS	AC=1;AF=0.583;AN=2;DP=1453;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,33:69:99:723,0,1197:22,14,19,14
chr2	10928777	.	A	C	924.16	PASS	AC=1;AF=0.667;AN=2;DP=4393;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,60:126:99:1433,0,1504:35,31,33,27
chr2	10928906	.	T	C	1157.76	PASS	AC=1;AF=0.667;AN=2;DP=3344;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,33:85:99:799,0,1438:22,30,13,20
chr2	10928962	.	A	G	922.02	PASS	AC=1;AF=0.667;AN=2;DP=3095;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,26:74:99:639,0,1182:22,26,12,14
chr2	10929133	.	A	G	527.92	PASS	AC=1;AF=0.667;AN=2;DP=1548;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,13:37:99:290,0,677:9,15,6,7
chr2	10929867	.	T	C	1062.73	PASS	AC=1;AF=0.667;AN=2;DP=3273;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:857,0,1055:22,18,20,19
chr2	10930050	.	A	T	208.34	PASS	AC=1;AF=0.667;AN=2;DP=1016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:224,0,314:1,8,3,6
chr2	10930106	.	ATTTT	AT,A,ATTT	125.86	PASS	AC=0,0,2;AF=0.304,0.446,0.036;AN=2;DP=280;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	3/3:2:6:0,0,0,2
chr2	10930903	.	T	C	1112.68	PASS	AC=1;AF=0.583;AN=2;DP=2182;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,59:106:99:1435,0,1130:20,27,24,35
chr2	10931001	.	A	G	282.34	PASS	AC=1;AF=0.676;AN=2;DP=438;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:373,0,409:0,11,0,10
chr2	10932082	.	T	C	856.36	PASS	AC=1;AF=0.667;AN=2;DP=1833;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:811,0,680:3,19,7,21
chr2	10932989	.	G	A	91.49	PASS	AC=1;AF=0.595;AN=2;DP=167;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant25-variant26-variant29-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:58:58,0,204:5,4,2,1
chr2	10933249	.	C	T	1772.88	PASS	AC=1;AF=0.657;AN=2;DP=3688;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,37:94:99:835,0,1397:27,30,15,22
chr2	10933346	.	T	TAGGC	315.98	PASS	AC=1;AF=0.583;AN=2;DP=907;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:743,0,897:6,16,6,14
chr2	10937037	.	T	G	265.63	PASS	AC=1;AF=0.662;AN=2;DP=810;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:428,0,428:11,0,12,1
chr2	10937065	.	T	C	445.76	PASS	AC=1;AF=0.583;AN=2;DP=985;MQ=60;set=variant2-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant16-variant17-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:634,0,599:17,4,17,5
chr2	10937409	.	C	T	81.15	PASS	AC=1;AF=0.681;AN=2;DP=688;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:402,0,170:2,5,2,10
chr2	10938043	.	T	G	45.94	PASS	AC=1;AF=0.681;AN=2;DP=433;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:73:162,0,73:0,2,0,4
chr2	10942567	.	G	A	79.7	PASS	AC=1;AF=0.681;AN=2;DP=390;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:71:233,0,71:3,0,6,1
chr2	10942687	.	C	T	754.35	PASS	AC=1;AF=0.681;AN=2;DP=3788;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,44:93:99:1181,0,1305:32,17,30,14
chr2	10950111	.	ATGAC	A	628.42	PASS	AC=1;AF=0.681;AN=2;DP=1192;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,18:47:99:666,0,2607:20,9,13,5
chr2	10950136	.	T	C	966.45	PASS	AC=1;AF=0.681;AN=2;DP=1700;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,27:68:99:878,0,2826:24,17,18,9
chr2	10950284	.	G	C	1861.22	PASS	AC=1;AF=0.681;AN=2;DP=3588;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,31:70:99:913,0,975:16,23,13,18
chr2	10952790	.	T	C	1439.85	PASS	AC=1;AF=0.681;AN=2;DP=3363;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,33:70:99:738,0,959:20,17,19,14
chr2	10953001	.	G	T	1015.46	PASS	AC=1;AF=0.667;AN=2;DP=2558;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,32:54:99:855,0,537:13,9,16,16
chr2	10953062	.	GT	G	208.79	PASS	AC=1;AF=0.667;AN=2;DP=1515;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:359,0,448:9,9,11,4
chr2	10961184	.	A	G	514.37	PASS	AC=1;AF=0.611;AN=2;DP=1544;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:764,0,685:11,17,16,17
chr2	10972383	.	A	G	381.59	PASS	AC=2;AF=0.977;AN=2;DP=2492;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1226,120,0:0,0,22,18
chr2	10972626	.	A	T	662.37	PASS	AC=2;AF=1;AN=2;DP=1254;FS=0;MQ=60;MQRankSum=1.641;ReadPosRankSum=-0.638;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:814,69,0:0,0,5,18
chr2	10978024	.	TTGTG	TTGTGTG,TTG,T	111.08	PASS	AC=0,1,0;AF=0.25,0.143,0.179;AN=2;DP=328;set=variant3-variant4-variant7-variant11-variant12-variant13-variant18-variant27-variant32-variant34-variant35-variant36-variant39-variant41	GT:DP:GQ:SB	0/2:5:75:0,2,0,3
chr2	10978056	.	G	A	94.73	PASS	AC=1;AF=0.786;AN=2;DP=472;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:75:75,0,120:0,2,0,2
chr2	10994418	.	T	C	948.25	PASS	AC=2;AF=1;AN=2;DP=1711;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2001,156,0:0,0,45,7
chr2	11053020	.	A	G	7564.51	PASS	AC=2;AF=0.864;AN=2;DP=12418;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,270:271:99:8797,772,0:1,0,134,136
chr2	11053740	.	C	T	3944.57	PASS	AC=1;AF=0.679;AN=2;DP=6479;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,77:130:99:2054,0,1326:23,30,40,37
chr2	11264830	.	G	A	1625.61	PASS	AC=2;AF=0.737;AN=2;DP=3299;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2124,221,0:0,0,44,30
chr2	11273123	.	TCACACACACACACACACACACACA	TCACACACACACACACACACACA,TCACACACACACACACACACACACACACA,TCACACACACACACACACACACACACA,TCACACACACACACACACA,T,TCACACACACACACACACACACACACACACA,TCACACACACACACACACACA,TCACACACACACACACACACACACACACACACACACA,TCACACACACACACACA	78.78	PASS	AC=0,1,0,0,0,0,0,0,0;AF=0.405,0.135,0.095,0.027,0.014,0.014,0.027,0.014,0.014;AN=2;DP=702;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:17:99:6,3,6,2
chr2	11273407	.	GTC	GTCTC,G,GTCTCTC,GTCTCTCTC	604.76	PASS	AC=0,1,0,0;AF=0.081,0.267,0.151,0.012;AN=2;DP=5059;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:87:99:39,27,9,12
chr2	11280500	.	TAAA	TAA,TA,T	56.38	PASS	AC=0,0,1;AF=0.188,0.313,0.146;AN=2;DP=267;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant33-variant34-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	0/3:10:99:4,2,3,1
chr2	11284947	.	C	CT,CTTT	60.25	PASS	AC=2,0;AF=0.882,0.026;AN=2;DP=329;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:6:18:0,0,1,5
chr2	11295226	.	C	CG	189.48	PASS	AC=1;AF=0.963;AN=2;DP=358;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,10:11:99:378,0,176:1,0,8,2
chr2	11295247	.	G	GGGGCGAGGCGAGGTTGGCCAGA	797.1	PASS	AC=1;AF=0.619;AN=2;DP=352;set=variant2-variant3-variant7-variant9-variant13-variant15-variant16-variant17-variant18-variant22-variant25-variant26-variant28-variant29-variant32-variant33-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,13:14:99:693,0,156:1,0,12,1
chr2	11295867	.	G	C	3409.12	PASS	AC=2;AF=0.768;AN=2;DP=3829;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2160,198,0:0,0,23,43
chr2	11300732	.	C	T	5598.33	PASS	AC=1;AF=0.643;AN=2;DP=6171;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,85:157:99:2090,0,1725:38,34,43,42
chr2	11300869	.	T	C	4139.53	PASS	AC=2;AF=0.898;AN=2;DP=5113;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3292,320,0:0,0,43,64
chr2	11300927	.	TAAAA	TA,T,TAA,TAAA	806.59	PASS	AC=1,0,0,0;AF=0.364,0.303,0.015,0.015;AN=2;DP=1462;set=variant-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:18:99:1,4,2,11
chr2	11312181	.	G	A	2351.17	PASS	AC=1;AF=0.605;AN=2;DP=2931;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,47:80:99:1334,0,844:12,21,12,35
chr2	11312224	.	C	T	1482.96	PASS	AC=1;AF=0.61;AN=2;DP=1473;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:769,0,548:3,15,2,19
chr2	11318191	.	G	GAGA	7340.61	PASS	AC=1;AF=0.59;AN=2;DP=11970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:153,157:310:99:6086,0,6980:67,86,70,87
chr2	11318457	.	G	A	2648.36	PASS	AC=1;AF=0.628;AN=2;DP=2788;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,41:79:99:1361,0,1220:29,9,31,10
chr2	11318477	.	C	T	3055.36	PASS	AC=2;AF=0.852;AN=2;DP=4058;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:4026,327,0:0,0,81,28
chr2	11320877	.	C	T	15519	PASS	AC=1;AF=0.595;AN=2;DP=16448;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:221,200:421:99:5121,0,5786:114,107,96,104
chr2	11321757	.	CTT	CT,CTTTTTTTTT,CTTT,CTTTTTTTTTT,CTTTTTTTT,C,CTTTTTT	87.74	PASS	AC=1,0,0,0,0,0,0;AF=0.35,0.025,0.025,0.025,0.025,0.025,0.025;AN=2;DP=1089;set=filterInvariant2-filterInvariant3-variant4-variant5-filterInvariant8-variant11-filterInvariant14-variant15-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-variant27-filterInvariant30-filterInvariant32-filterInvariant39-variant40-filterInvariant41-variant42-filterInvariant43	GT:DP:GQ:SB	0/1:24:99:0,11,0,13
chr2	11322137	.	A	AAAAAAC	5796.68	PASS	AC=1;AF=0.628;AN=2;DP=5074;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,46:96:99:1761,0,2984:32,18,31,15
chr2	11323078	.	CTATA	CTA,C	3015.38	PASS	AC=2,0;AF=0.852,0.023;AN=2;DP=4837;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:80:99:0,0,27,53
chr2	11323276	.	T	C	2859.59	PASS	AC=1;AF=0.595;AN=2;DP=3860;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,40:78:99:1031,0,1109:15,23,22,18
chr2	11333994	.	T	G	922.37	PASS	AC=1;AF=0.5;AN=2;DP=1537;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant13-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant33-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,18:52:99:520,0,1069:10,24,5,13
chr2	11348364	.	C	CTAACT	409.21	PASS	AC=1;AF=0.618;AN=2;DP=562;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:646,0,604:6,3,11,3
chr2	11348609	.	CAAAT	C	1028.15	PASS	AC=1;AF=0.595;AN=2;DP=937;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,18:25:99:735,0,340:2,5,4,14
chr2	11356190	.	G	A	1101.45	PASS	AC=1;AF=0.595;AN=2;DP=1085;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,8:27:99:119,0,452:10,9,4,4
chr2	11359031	.	G	T	1352.23	PASS	AC=2;AF=0.875;AN=2;DP=1453;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1165,102,0:0,0,25,9
chr2	11359120	.	G	T	3095.96	PASS	AC=1;AF=0.615;AN=2;DP=3459;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,32:89:99:762,0,1483:33,24,22,10
chr2	11359399	.	A	C	181.36	PASS	AC=1;AF=0.645;AN=2;DP=239;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:108,0,205:0,5,0,3
chr2	11484452	.	AGCCCGGCCCAGCCCG	A	905.87	PASS	AC=1;AF=0.5;AN=2;DP=175;MQ=60;set=variant8-variant15-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:760,0,1412:3,9,8,11
chr2	11584700	.	T	TC	485.72	PASS	AC=1;AF=0.5;AN=2;DP=1146;set=variant10-filterInvariant25-filterInvariant28-filterInvariant30-filterInvariant32-filterInvariant36-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:116,23:139:99:232,0,5986:17,99,23,0
chr2	11584704	.	T	C	239.32	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3565;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:104,28:132:99:687,0,3135:5,99,28,0
chr2	11584709	.	A	C	224.99	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3004;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:97,26:123:99:546,0,5691:3,94,26,0
chr2	11584713	.	G	C	281.51	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2688;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:92,25:117:99:567,0,5454:4,88,25,0
chr2	11584718	.	A	C	61.98	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1008;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:93,17:110:99:274,0,5525:5,88,17,0
chr2	11584721	.	A	T	32.92	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=590;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:89,11:100:92:92,0,5182:4,85,11,0
chr2	11725179	.	G	GA	754.25	PASS	AC=2;AF=0.613;AN=2;DP=2442;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,39:43:17:939,17,0:3,1,28,11
chr2	11725241	.	G	A	1313.02	PASS	AC=2;AF=0.633;AN=2;DP=4444;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3050,313,0:0,0,61,44
chr2	11727507	.	G	A	1986.52	PASS	AC=2;AF=0.688;AN=2;DP=8499;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,207:207:99:6006,616,0:0,0,99,108
chr2	11727867	.	A	ACACACACACACACACACGCGCG,ACACACACACACACGCGCG,ACACACACACACGCGCG,ACACACACACACACACGCGCG,ACACACACACACACGCGCGCG,ACACACACACGCGCGCG	749.03	PASS	AC=0,0,0,2,0,0;AF=0.143,0.143,0.143,0.214,0.071,0.071;AN=2;DP=100;set=variant4-variant9-variant18-variant22-variant29-variant39-variant41	GT:DP:GQ:SB	4/4:11:53:0,0,7,4
chr2	11727988	.	G	C	394.5	PASS	AC=2;AF=0.688;AN=2;DP=1441;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:971,99,0:0,0,16,17
chr2	11728080	.	G	A	209.31	PASS	AC=2;AF=0.617;AN=2;DP=389;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,0,8
chr2	11728089	.	C	T	187.58	PASS	AC=2;AF=0.638;AN=2;DP=334;FractionInformativeReads=1;set=variant2-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:24:360,24,0:0,0,0,7
chr2	11728381	.	T	C	553.45	PASS	AC=2;AF=0.688;AN=2;DP=1042;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:54:799,54,0:0,0,12,5
chr2	11728388	.	T	C	589.2	PASS	AC=2;AF=0.633;AN=2;DP=850;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:799,54,0:0,0,13,5
chr2	11731774	.	T	G	1341.55	PASS	AC=2;AF=0.688;AN=2;DP=4188;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:3312,279,0:0,0,55,38
chr2	11731846	.	T	C	2565.92	PASS	AC=2;AF=0.688;AN=2;DP=8237;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5735,519,0:0,0,106,67
chr2	11733488	.	G	T	31.75	PASS	AC=2;AF=0.672;AN=2;DP=350;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:402,39,0:0,0,4,9
chr2	11736037	.	A	G	246.04	PASS	AC=2;AF=0.675;AN=2;DP=727;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1169,93,0:0,0,23,8
chr2	11738091	.	T	C	6729.62	PASS	AC=2;AF=0.989;AN=2;DP=11138;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,228:228:99:6684,683,0:0,0,105,123
chr2	11738765	.	C	T	1148.05	PASS	AC=2;AF=0.977;AN=2;DP=1182;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1257,93,0:0,0,27,4
chr2	11741193	.	C	A	263.61	PASS	AC=2;AF=0.989;AN=2;DP=774;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.371;ReadPosRankSum=-1.66;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:369,30,0:0,0,1,9
chr2	11742458	.	A	G	707.47	PASS	AC=2;AF=0.625;AN=2;DP=785;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1337,105,0:0,0,30,5
chr2	11752635	.	T	C	2978.82	PASS	AC=2;AF=1;AN=2;DP=3347;FS=0;MQ=60;MQRankSum=1.256;ReadPosRankSum=0.52;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2385,228,0:0,0,33,43
chr2	11755443	.	T	G	475.52	PASS	AC=2;AF=0.854;AN=2;DP=1075;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:973,78,0:0,0,4,22
chr2	11757009	.	A	G	1645.34	PASS	AC=2;AF=0.989;AN=2;DP=2564;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,52:53:99:1611,117,0:1,0,23,29
chr2	11757023	.	C	T	1466.49	PASS	AC=1;AF=0.724;AN=2;DP=2066;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,14:48:99:257,0,894:16,18,6,8
chr2	11757076	.	G	C	1205.02	PASS	AC=1;AF=0.737;AN=2;DP=1414;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,8:29:99:273,0,849:9,12,4,4
chr2	11757086	.	G	A	1096.77	PASS	AC=1;AF=0.737;AN=2;DP=1285;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,8:28:99:276,0,816:9,11,4,4
chr2	11761309	.	T	C	1241.95	PASS	AC=2;AF=0.977;AN=2;DP=1495;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1090,84,0:0,0,5,23
chr2	11781593	.	G	GGTTTT,GGTTTTGTTTTGTTTT,GGTTTGGTTTTGTTTT,GGTTTTGTTTT	501.12	PASS	AC=0,2,0,0;AF=0.238,0.338,0.013,0.113;AN=2;DP=937;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:11:33:0,0,0,11
chr2	11782310	.	C	T	156.22	PASS	AC=2;AF=0.986;AN=2;DP=177;FS=0;MQ=60;MQRankSum=0.358;ReadPosRankSum=1.231;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:302,24,0:0,0,2,6
chr2	11809513	.	G	A	46.72	PASS	AC=1;AF=0.74;AN=2;DP=137;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant17-variant18-variant19-variant22-variant26-variant27-variant28-variant29-variant31-variant32-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:33:81,0,33:1,0,2,0
chr2	11810095	.	G	A	4394.69	PASS	AC=2;AF=0.989;AN=2;DP=6292;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3643,347,0:0,0,52,64
chr2	11817812	.	G	C	1074.72	PASS	AC=1;AF=0.75;AN=2;DP=5506;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,77:126:99:1831,0,1155:27,22,42,35
chr2	11818019	.	G	A	370.04	PASS	AC=1;AF=0.5;AN=2;DP=93;FS=0;FractionInformativeReads=1;MQ=60;set=variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,23:39:99:821,0,494:2,14,2,21
chr2	11853913	.	G	A	1038.14	PASS	AC=1;AF=0.6;AN=2;DP=969;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant9-variant11-variant12-variant17-variant19-variant22-variant33-variant34-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,33:54:99:833,0,569:14,7,19,14
chr2	11853964	.	G	A	1431.05	PASS	AC=1;AF=0.6;AN=2;DP=1285;MQ=60;set=variant-variant6-variant9-variant11-variant12-variant17-variant19-variant22-variant33-variant34-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,35:67:99:813,0,747:18,14,19,16
chr2	11854012	.	G	A	3010.23	PASS	AC=1;AF=0.542;AN=2;DP=1084;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant18-variant19-variant20-variant27-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,32:62:99:782,0,729:14,16,18,14
chr2	11886952	.	G	C	212.4	PASS	AC=1;AF=0.5;AN=2;DP=76;MQ=60;set=variant2-variant5-variant8-variant10-variant19-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:243,0,129:1,4,5,5
chr2	11905636	.	GT	G	2185.28	PASS	AC=2;AF=0.697;AN=2;DP=2839;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2518,255,0:0,0,49,36
chr2	11907842	.	C	T	1447.99	PASS	AC=1;AF=0.5;AN=2;DP=692;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant12-variant17-variant31-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:36,55:91:99:1407,0,945:23,13,32,23
chr2	11908138	.	T	C	323.93	PASS	AC=1;AF=0.5;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:215,0,489:4,12,3,6
chr2	11917519	.	G	A	2921.52	PASS	AC=1;AF=0.636;AN=2;DP=3627;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,55:102:99:1486,0,1181:22,25,25,30
chr2	11924950	.	T	C	494.29	PASS	AC=2;AF=0.689;AN=2;DP=2713;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2338,243,0:0,0,41,40
chr2	11928314	.	T	C	151.43	PASS	AC=1;AF=0.5;AN=2;DP=53;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:313,0,160:5,0,8,1
chr2	11932173	.	G	T	298.55	PASS	AC=2;AF=0.639;AN=2;DP=1210;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1401,126,0:0,0,10,32
chr2	11936798	.	A	G	346.77	PASS	AC=2;AF=0.639;AN=2;DP=1041;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1078,81,0:0,0,25,2
chr2	11945108	.	GT	GTT,G,GTTT	145.75	PASS	AC=1,0,0;AF=0.34,0.14,0.02;AN=2;DP=1666;set=filterInvariant-filterInvariant4-filterInvariant7-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant15-variant17-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant29-filterInvariant30-variant31-filterInvariant35-filterInvariant36-filterInvariant37-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:54:99:20,19,10,5
chr2	11965541	.	A	G	2834.89	PASS	AC=2;AF=0.795;AN=2;DP=9848;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:5368,536,0:0,0,94,85
chr2	11977154	.	C	T	869.59	PASS	AC=1;AF=0.5;AN=2;DP=205;FractionInformativeReads=1;MQ=60;set=variant21-variant23-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,36:56:99:858,0,552:5,15,15,21
chr2	12164189	.	C	T	581.72	PASS	AC=2;AF=0.756;AN=2;DP=2355;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1505,141,0:0,0,21,26
chr2	12858078	.	G	A	2001.7	PASS	AC=2;AF=0.583;AN=2;DP=2590;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant20-variant26-variant32-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3297,317,0:0,0,55,51
chr2	12877307	.	C	G,T	121.62	PASS	AC=1,0;AF=0.603,0.147;AN=2;DP=1138;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:29:99:11,6,8,4
chr2	12877501	.	G	GA	474.32	PASS	AC=1;AF=0.769;AN=2;DP=4557;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,48:106:99:1588,0,2010:34,24,28,20
chr2	12881526	.	T	G	3913.18	PASS	AC=1;AF=0.559;AN=2;DP=5091;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant15-variant16-variant20-variant26-variant32-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:132,120:252:99:3147,0,3357:66,66,54,66
chr2	12881778	.	T	A	3514.58	PASS	AC=1;AF=0.656;AN=2;DP=10414;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,166:306:99:4171,0,3207:66,74,83,83
chr2	12882023	.	A	T	2312.68	PASS	AC=1;AF=0.5;AN=2;DP=316;FractionInformativeReads=1;MQ=60;set=variant23-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,64:139:99:1788,0,2434:58,17,36,28
chr2	12882822	.	ATC	A	39.73	PASS	AC=1;AF=0.683;AN=2;DP=404;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:228,0,269:3,4,2,4
chr2	14772997	.	T	G	402.28	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.425;QD=8.94;ReadPosRankSum=-2.608;SOR=0.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,19:45:99:431,0,622:12,14,9,10
chr2	14774018	.	A	G	731.64	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=2.104;FractionInformativeReads=1;MQ=60;MQRankSum=1.493;QD=11.61;ReadPosRankSum=-2.58;SOR=0.934;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:760,0,860:17,16,13,17
chr2	14777403	.	G	A	2726.78	PASS	AC=1;AF=0.5;AN=2;DP=189;FS=5.092;FractionInformativeReads=1;MQ=60;MQRankSum=-0.821;QD=14.43;ReadPosRankSum=-0.017;SOR=0.923;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:93,96:189:99:2755,0,3029:48,45,42,54
chr2	14778607	.	G	A	1657.57	PASS	AC=1;AF=0.5;AN=2;DP=180;FS=5.528;FractionInformativeReads=1;MQ=60;MQRankSum=-0.104;QD=9.21;ReadPosRankSum=-0.127;SOR=1.133;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:108,72:180:99:1686,0,2661:49,59,26,46
chr2	14779227	.	TAC	TACAC,T,TACACAC	750.09	PASS	AC=1,0,0;AF=0.435,0.065,0.022;AN=2;DP=2046;set=variant-variant2-variant4-variant7-variant9-variant11-variant12-filterInvariant14-variant17-variant20-variant23-variant24-variant25-filterInvariant26-variant27-variant29-variant32-variant36-filterInvariant37-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:79:64:7,2,41,29
chr2	14779829	.	A	G	4492.79	PASS	AC=2;AF=0.55;AN=2;DP=6203;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant11-variant12-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant32-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,237:237:99:7333,708,0:0,0,102,135
chr2	14780038	.	T	G	1180.91	PASS	AC=2;AF=0.55;AN=2;DP=1443;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant11-variant12-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant32-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2300,186,0:0,0,40,22
chr2	15319070	.	TA	T	489.03	PASS	AC=1;AF=0.648;AN=2;DP=1344;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant16-variant19-variant20-variant21-variant23-variant24-variant26-variant29-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:316,0,443:15,6,11,5
chr2	15378822	.	G	GAATT	277.58	PASS	AC=2;AF=0.955;AN=2;DP=474;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:495,33,0:0,0,2,9
chr2	15415525	.	C	T	738.45	PASS	AC=1;AF=0.686;AN=2;DP=1682;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:691,0,672:18,5,18,7
chr2	15417280	.	ATT	A	115.75	PASS	AC=1;AF=0.686;AN=2;DP=599;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:280,0,497:1,6,0,8
chr2	15417285	.	T	A	124.75	PASS	AC=1;AF=0.686;AN=2;DP=561;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:280,0,497:1,6,0,8
chr2	15427173	.	C	T	1469.87	PASS	AC=1;AF=0.621;AN=2;DP=3734;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1250,0,1422:32,22,30,20
chr2	15448311	.	A	T	1234.64	PASS	AC=1;AF=0.691;AN=2;DP=4701;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,69:144:99:1635,0,1990:48,27,38,31
chr2	15471002	.	C	A	370.1	PASS	AC=1;AF=0.696;AN=2;DP=438;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant28-variant30-variant31-variant32-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:224,0,287:2,8,1,6
chr2	15491994	.	GCACACACACACA	G,GCA,GCACACACACA,GCACA,GCACACACACACACACACACA,GCACACACA	1434.63	PASS	AC=0,1,0,0,0,0;AF=0.186,0.512,0.035,0.012,0.012,0.023;AN=2;DP=2649;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:59:99:21,8,21,9
chr2	15493881	.	A	G	2166.01	PASS	AC=1;AF=0.795;AN=2;DP=2678;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:652,0,858:11,20,7,18
chr2	15519992	.	G	T	1749.23	PASS	AC=1;AF=0.798;AN=2;DP=2123;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:716,0,574:9,16,8,18
chr2	15523266	.	A	T	340.68	PASS	AC=2;AF=0.976;AN=2;DP=724;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:568,57,0:0,0,11,8
chr2	15523307	.	TA	T	1132.54	PASS	AC=1;AF=0.8;AN=2;DP=1398;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:431,0,307:9,5,9,9
chr2	15523549	.	T	C	639.53	PASS	AC=1;AF=0.813;AN=2;DP=665;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:103,0,237:2,5,1,3
chr2	15533689	.	T	C	998.69	PASS	AC=1;AF=0.798;AN=2;DP=1430;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:392,0,676:16,5,11,3
chr2	15533734	.	G	GAAATGAAAGCGTATGTCTACAC	2768.64	PASS	AC=1;AF=0.798;AN=2;DP=2571;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,25:55:99:1264,0,1572:17,13,18,7
chr2	15533779	.	G	A	2940.18	PASS	AC=1;AF=0.798;AN=2;DP=4941;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,57:115:99:1242,0,1393:30,28,28,29
chr2	15533884	.	C	A	2299.96	PASS	AC=1;AF=0.798;AN=2;DP=3046;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:1231,0,2988:14,26,13,22
chr2	15533895	.	A	G	2176.77	PASS	AC=1;AF=0.8;AN=2;DP=2438;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:1142,0,2802:12,20,12,16
chr2	15533899	.	A	G	2041.77	PASS	AC=1;AF=0.798;AN=2;DP=2381;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:1079,0,2789:12,20,11,16
chr2	15564718	.	T	C	598.24	PASS	AC=1;AF=0.786;AN=2;DP=565;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:102,0,160:1,4,1,3
chr2	15567649	.	T	C	588.92	PASS	AC=1;AF=0.798;AN=2;DP=905;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:75:75,0,493:12,4,3,3
chr2	15601287	.	A	AT	1103.84	PASS	AC=1;AF=0.798;AN=2;DP=992;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:356,0,372:7,5,9,2
chr2	15601441	.	C	T	2027.14	PASS	AC=1;AF=0.798;AN=2;DP=3361;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,35:69:99:855,0,714:18,16,15,20
chr2	15601574	.	C	T	327.99	PASS	AC=1;AF=0.798;AN=2;DP=482;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:269,0,170:0,5,2,8
chr2	15607842	.	T	C	2265.54	PASS	AC=1;AF=0.795;AN=2;DP=3818;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,56:107:99:1394,0,1247:22,29,27,29
chr2	15608013	.	C	A	250.68	PASS	AC=1;AF=0.805;AN=2;DP=547;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,11:15:99:440,0,138:0,4,1,10
chr2	15613678	.	T	C	242.99	PASS	AC=1;AF=0.8;AN=2;DP=729;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:126,0,264:0,7,1,4
chr2	15613715	.	G	A	190.3	PASS	AC=1;AF=0.829;AN=2;DP=346;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:112,0,159:0,4,2,2
chr2	15614404	.	T	C	1239.93	PASS	AC=1;AF=0.798;AN=2;DP=3306;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,43:82:99:929,0,867:15,24,18,25
chr2	15615910	.	A	G	3120.86	PASS	AC=1;AF=0.8;AN=2;DP=4338;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,56:128:99:1158,0,1680:38,34,27,29
chr2	15616013	.	C	G	755.26	PASS	AC=1;AF=0.8;AN=2;DP=2019;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,17:65:99:450,0,1196:20,28,2,15
chr2	15616030	.	C	T	554.71	PASS	AC=1;AF=0.8;AN=2;DP=1525;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,13:45:99:372,0,825:12,20,1,12
chr2	15618339	.	G	A	1095.03	PASS	AC=1;AF=0.798;AN=2;DP=1735;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:517,0,318:9,3,12,8
chr2	15623608	.	C	G	745.72	PASS	AC=1;AF=0.805;AN=2;DP=595;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:46:244,0,46:1,2,1,6
chr2	15644107	.	C	A	761.49	PASS	AC=1;AF=0.763;AN=2;DP=742;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:302,0,697:8,0,6,0
chr2	15644111	.	C	T	798.26	PASS	AC=1;AF=0.776;AN=2;DP=830;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:296,0,764:11,0,8,0
chr2	15644401	.	C	T	1106.04	PASS	AC=1;AF=0.769;AN=2;DP=1509;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:482,0,568:5,15,6,12
chr2	15674686	.	T	C	2427.06	PASS	AC=1;AF=0.788;AN=2;DP=4325;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,50:93:99:1183,0,973:22,21,25,25
chr2	15676686	.	G	A	1414.57	PASS	AC=1;AF=0.798;AN=2;DP=2064;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,16:39:99:361,0,532:9,14,7,9
chr2	15678368	.	C	T	242.08	PASS	AC=1;AF=0.8;AN=2;DP=753;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:221,0,280:8,4,7,3
chr2	15678482	.	T	C	1110.97	PASS	AC=1;AF=0.8;AN=2;DP=1921;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:660,0,736:16,14,16,10
chr2	15678501	.	GA	G	1191.06	PASS	AC=1;AF=0.813;AN=2;DP=1933;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:523,0,557:12,12,13,9
chr2	15679609	.	A	T	131.48	PASS	AC=1;AF=0.838;AN=2;DP=231;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:193,0,111:1,3,1,5
chr2	15691791	.	G	T	3264.99	PASS	AC=1;AF=0.559;AN=2;DP=1528;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant9-variant10-variant13-variant16-variant21-variant23-variant24-variant26-variant33-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,35:88:99:786,0,1277:22,31,12,23
chr2	15691886	.	G	A	560.6	PASS	AC=1;AF=0.8;AN=2;DP=761;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:305,0,224:0,6,0,8
chr2	15694164	.	T	TA	1496.78	PASS	AC=1;AF=0.798;AN=2;DP=1715;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:391,0,676:14,5,7,5
chr2	15731583	.	C	T	1287.11	PASS	AC=1;AF=0.567;AN=2;DP=618;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant18-variant21-variant24-variant27-variant32-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,24:36:99:747,0,326:9,3,17,7
chr2	15731605	.	C	T	1708.91	PASS	AC=2;AF=0.692;AN=2;DP=2244;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1849,155,0:0,0,38,14
chr2	15731859	.	A	C	5555.12	PASS	AC=2;AF=0.692;AN=2;DP=7105;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,169:170:99:5419,478,0:1,0,79,90
chr2	15731998	.	A	G	6690.76	PASS	AC=2;AF=0.692;AN=2;DP=7836;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,212:212:99:6638,635,0:0,0,119,93
chr2	15732238	.	G	C	2604.07	PASS	AC=1;AF=0.567;AN=2;DP=980;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant18-variant21-variant24-variant27-variant32-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,21:59:99:596,0,1218:7,31,2,19
chr2	15735648	.	T	C	1101.07	PASS	AC=1;AF=0.5;AN=2;DP=1396;MQ=60;set=variant8-variant10-variant15-variant16-variant17-variant19-variant21-variant23-variant25-variant26-variant30-variant31-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,39:97:99:957,0,1429:32,26,18,21
chr2	15737480	.	C	A	736.1	PASS	AC=1;AF=0.567;AN=2;DP=550;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant18-variant21-variant24-variant27-variant32-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,10:33:99:270,0,613:14,9,8,2
chr2	15737698	.	G	A	127.77	PASS	AC=2;AF=0.667;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant31-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:415,30,0:0,0,0,10
chr2	15744123	.	T	G	1606.94	PASS	AC=1;AF=0.567;AN=2;DP=722;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant18-variant21-variant24-variant27-variant32-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,29:44:99:795,0,401:3,12,9,20
chr2	15746220	.	C	T	763.54	PASS	AC=1;AF=0.5;AN=2;DP=1237;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant16-variant19-variant21-variant23-variant26-variant30-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,50:107:99:1391,0,1598:24,33,26,24
chr2	15747234	.	G	A	641.45	PASS	AC=1;AF=0.545;AN=2;DP=524;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant21-variant24-variant32-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:573,0,518:14,6,15,9
chr2	15747393	.	C	T	3465.37	PASS	AC=2;AF=0.681;AN=2;DP=3730;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2760,270,0:0,0,39,51
chr2	15753307	.	AT	ATT,A	277.84	PASS	AC=1,0;AF=0.6,0.033;AN=2;DP=255;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant21-variant24-variant27-variant32-variant34-variant35-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:18:99:4,4,5,5
chr2	15753482	.	C	G	1118.89	PASS	AC=1;AF=0.571;AN=2;DP=596;MQ=60;set=variant-variant5-variant9-variant10-variant18-variant21-variant24-variant27-variant32-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,25:40:99:657,0,314:8,7,13,12
chr2	15753604	.	A	G	419.03	PASS	AC=1;AF=0.571;AN=2;DP=206;MQ=60;set=variant-variant5-variant9-variant10-variant18-variant21-variant24-variant27-variant32-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:390,0,173:2,5,4,10
chr2	15758293	.	T	C	2179.28	PASS	AC=1;AF=0.567;AN=2;DP=726;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant18-variant21-variant24-variant27-variant32-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:346,0,426:11,9,9,6
chr2	15763788	.	C	T	205.68	PASS	AC=1;AF=0.567;AN=2;DP=155;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant18-variant21-variant24-variant27-variant32-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:353,0,225:0,6,0,9
chr2	15768846	.	AT	A	3921.52	PASS	AC=1;AF=0.567;AN=2;DP=1832;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant18-variant21-variant24-variant27-variant32-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,67:118:99:1684,0,1162:26,25,34,33
chr2	15768876	.	G	A	1482.23	PASS	AC=1;AF=0.553;AN=2;DP=2084;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant11-variant14-variant20-variant23-variant24-variant26-variant27-variant29-variant31-variant34-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,48:116:99:1127,0,1667:35,33,22,26
chr2	15770061	.	G	A	973.12	PASS	AC=1;AF=0.567;AN=2;DP=332;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant18-variant21-variant24-variant27-variant32-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:478,0,322:9,1,11,4
chr2	15840505	.	C	A	1152.15	PASS	AC=1;AF=0.663;AN=2;DP=3525;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,39:75:99:876,0,953:20,16,18,21
chr2	15840522	.	G	T	1197.97	PASS	AC=1;AF=0.663;AN=2;DP=3719;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,35:78:99:839,0,1160:25,18,16,19
chr2	15840623	.	A	G	855.35	PASS	AC=1;AF=0.5;AN=2;DP=685;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant13-variant15-variant22-variant28-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,45:65:99:1088,0,400:7,13,19,26
chr2	15840645	.	T	C	712.05	PASS	AC=1;AF=0.686;AN=2;DP=2436;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,17:54:99:339,0,914:14,23,6,11
chr2	15841230	.	T	A	317.15	PASS	AC=1;AF=0.675;AN=2;DP=447;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:314,0,128:4,0,8,2
chr2	15841288	.	G	A	392.67	PASS	AC=1;AF=0.663;AN=2;DP=1352;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:329,0,443:12,2,9,3
chr2	16086469	.	C	T	408.64	PASS	AC=1;AF=0.525;AN=2;DP=1468;set=variant-variant3-variant4-variant6-variant7-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant24-variant25-variant29-variant33-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,33:67:99:792,0,963:14,20,15,18
chr2	16731255	.	GT	G	3329.02	PASS	AC=1;AF=0.565;AN=2;DP=8451;set=variant-variant2-variant6-variant7-variant10-variant11-variant13-variant14-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:154,153:307:99:3280,0,3030:69,85,74,79
chr2	16731510	.	G	A	698.13	PASS	AC=1;AF=0.563;AN=2;DP=1293;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant11-variant13-variant14-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,31:61:99:1020,0,964:9,21,12,19
chr2	16731572	.	CA	CAA,C,CAAA	149.3	PASS	AC=1,0,0;AF=0.458,0.083,0.021;AN=2;DP=884;set=variant-variant2-variant6-filterInvariant7-variant10-variant11-variant13-variant20-variant21-variant23-variant24-filterInvariant25-variant26-variant28-variant30-variant32-variant34-variant35-variant36-filterInvariant38-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:38:99:8,11,7,12
chr2	16732275	.	G	T	4048.43	PASS	AC=1;AF=0.565;AN=2;DP=5781;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant11-variant13-variant14-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,113:227:99:2678,0,2928:44,70,58,55
chr2	16732391	.	T	G	1529.32	PASS	AC=1;AF=0.565;AN=2;DP=2695;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant11-variant13-variant14-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,52:124:99:1334,0,1764:31,41,19,33
chr2	16733054	.	G	A	2808.97	PASS	AC=1;AF=0.565;AN=2;DP=5309;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant11-variant13-variant14-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,114:210:99:2750,0,2447:55,41,61,53
chr2	16733412	.	C	T	281.82	PASS	AC=1;AF=0.5;AN=2;DP=135;FractionInformativeReads=1;MQ=60;set=variant13-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,28:50:99:843,0,663:14,8,13,15
chr2	16733525	.	G	T	1094.5	PASS	AC=1;AF=0.568;AN=2;DP=1979;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant11-variant13-variant14-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:996,0,1000:23,18,24,17
chr2	16733928	.	A	G	3070.32	PASS	AC=1;AF=0.583;AN=2;DP=4491;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant11-variant13-variant14-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,105:191:99:2654,0,2269:48,38,60,45
chr2	16736629	.	T	TA	126.47	PASS	AC=1;AF=0.5;AN=2;DP=80;MQ=60;set=variant10-variant13-variant21-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:331,0,302:2,7,4,6
chr2	16743453	.	A	C	803.1	PASS	AC=1;AF=0.574;AN=2;DP=3303;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,35:71:99:892,0,896:14,22,12,23
chr2	16746897	.	C	G	569.79	PASS	AC=1;AF=0.563;AN=2;DP=789;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant11-variant14-variant15-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:525,0,496:11,6,13,5
chr2	16805318	.	G	A	321.74	PASS	AC=2;AF=0.682;AN=2;DP=477;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant12-variant13-variant16-variant17-variant18-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:990,66,0:0,0,9,13
chr2	16805324	.	C	A	258.01	PASS	AC=2;AF=0.682;AN=2;DP=442;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant12-variant13-variant16-variant17-variant18-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:990,66,0:0,0,9,13
chr2	16805353	.	T	G	96.25	PASS	AC=2;AF=0.682;AN=2;DP=344;MQ=60;set=variant3-variant8-variant12-variant13-variant16-variant17-variant18-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:358,33,0:0,0,4,7
chr2	17691950	.	CA	C	2780.24	PASS	AC=1;AF=0.684;AN=2;DP=4381;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,44:90:99:953,0,1018:28,18,30,14
chr2	17696573	.	C	T	3983.54	PASS	AC=1;AF=0.684;AN=2;DP=6305;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,59:175:99:1172,0,3043:59,57,26,33
chr2	17696620	.	C	G	1751.62	PASS	AC=1;AF=0.5;AN=2;DP=491;FractionInformativeReads=1;MQ=60;set=variant16-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:110,39:149:99:795,0,3054:48,62,15,24
chr2	17698678	.	A	G	1922.25	PASS	AC=1;AF=0.711;AN=2;DP=2986;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:966,0,925:16,18,12,19
chr2	17720520	.	G	C	607.62	PASS	AC=1;AF=0.545;AN=2;DP=1110;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant29-variant32-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:593,0,623:12,12,12,12
chr2	17722597	.	T	C	4331.58	PASS	AC=2;AF=0.989;AN=2;DP=6274;FS=0;MQ=60;MQRankSum=-0.529;ReadPosRankSum=0.183;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4706,445,0:0,0,95,54
chr2	17773524	.	G	A	694.56	PASS	AC=1;AF=0.731;AN=2;DP=1957;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,18:51:99:399,0,919:10,23,7,11
chr2	17830599	.	T	G	521.66	PASS	AC=1;AF=0.5;AN=2;DP=321;MQ=60;set=variant10-variant11-variant19-variant24-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:473,0,532:14,2,14,2
chr2	17836450	.	C	CT	208.82	PASS	AC=1;AF=0.5;AN=2;DP=216;MQ=60;set=variant10-variant11-variant19-variant24-variant25-variant32-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:265,0,359:9,5,9,2
chr2	17836722	.	TCACACACACA	TCACACACACACACACACACA,TCACACACACACACACACA,TCACACA,TCACACACACACACA,TCACACACA,T,TCACACACACACA,TCACACACACACACACA,TCA	2518.13	PASS	AC=0,0,1,0,0,0,1,0,0;AF=0.023,0.081,0.081,0.36,0.058,0.012,0.174,0.035,0.035;AN=2;DP=3671;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/7:80:99:2,1,45,32
chr2	17845296	.	A	G	10896.7	PASS	AC=2;AF=0.866;AN=2;DP=12972;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,292:292:99:8678,874,0:0,0,152,140
chr2	17846006	.	TG	T	3237.19	PASS	AC=1;AF=0.5;AN=2;DP=1727;MQ=60;set=variant10-variant11-variant19-variant24-variant32-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,94:187:99:3204,0,3185:38,55,42,52
chr2	17846592	.	A	T	6526.84	PASS	AC=2;AF=0.866;AN=2;DP=7630;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,170:170:99:5116,509,0:0,0,103,67
chr2	17888457	.	G	A	930.6	PASS	AC=1;AF=0.643;AN=2;DP=2603;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,59:118:99:1572,0,1393:33,26,36,23
chr2	17898326	.	C	T	909.76	PASS	AC=1;AF=0.643;AN=2;DP=2018;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,17:70:99:337,0,1272:28,25,10,7
chr2	17902381	.	C	G	2308.68	PASS	AC=1;AF=0.5;AN=2;DP=1264;MQ=60;set=variant3-variant10-variant11-variant19-variant24-variant25-variant32-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,55:115:99:1332,0,1350:32,28,25,30
chr2	17906608	.	C	T	418.3	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=1.352;FractionInformativeReads=1;MQ=60;MQRankSum=0.633;QD=12.68;ReadPosRankSum=1.32;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:447,0,305:7,8,7,11
chr2	17913266	.	A	C	1647.07	PASS	AC=2;AF=1;AN=2;DP=1242;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:578,51,0:0,0,4,13
chr2	17927275	.	C	T	276.51	PASS	AC=1;AF=0.655;AN=2;DP=541;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:147,0,287:0,7,0,4
chr2	17935038	.	T	C	927.15	PASS	AC=1;AF=0.5;AN=2;DP=631;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant19-variant24-variant32-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,35:62:99:1181,0,786:6,21,6,29
chr2	17935495	.	T	C	242.8	PASS	AC=1;AF=0.5;AN=2;DP=128;MQ=60;set=variant10-variant11-variant19-variant24-variant32-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:276,0,183:5,3,7,4
chr2	17941423	.	T	G	198.72	PASS	AC=2;AF=0.756;AN=2;DP=1512;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1022,84,0:0,0,5,23
chr2	17942775	.	T	A	816.53	PASS	AC=2;AF=0.756;AN=2;DP=4027;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2105,238,0:0,0,43,37
chr2	17946243	.	A	G	1105.1	PASS	AC=1;AF=0.5;AN=2;DP=1026;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant11-variant19-variant24-variant25-variant32-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:57,45:102:99:1087,0,1260:29,28,20,25
chr2	17948034	.	A	G	692.01	PASS	AC=1;AF=0.5;AN=2;DP=462;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant11-variant19-variant24-variant25-variant32-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,15:42:99:416,0,713:9,18,3,12
chr2	17949939	.	TTAA	T	1189.17	PASS	AC=1;AF=0.5;AN=2;DP=613;MQ=60;set=variant3-variant10-variant11-variant19-variant24-variant25-variant32-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:945,0,1008:13,8,18,6
chr2	17952232	.	A	T	480.57	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.425;QD=10.68;ReadPosRankSum=0.609;SOR=0.566;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,19:45:99:509,0,827:21,5,15,4
chr2	17954027	.	G	A	2304	PASS	AC=2;AF=1;AN=2;DP=3510;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2570,258,0:0,0,37,49
chr2	17954140	.	A	G	304.31	PASS	AC=2;AF=0.756;AN=2;DP=998;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:870,72,0:0,0,7,17
chr2	17954421	.	C	G	1140.69	PASS	AC=2;AF=0.756;AN=2;DP=2788;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,59:60:99:1920,155,0:0,1,25,34
chr2	17954647	.	T	G	119.18	PASS	AC=2;AF=0.784;AN=2;DP=261;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:284,24,0:0,0,2,6
chr2	17959405	.	GTA	GTATA,G	63.41	PASS	AC=0,1;AF=0.31,0.238;AN=2;DP=554;set=variant-variant3-variant5-variant10-variant11-variant12-variant14-variant15-variant19-variant24-variant25-variant28-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-filterInvariant43	GT:DP:GQ:SB	0/2:16:99:3,5,3,5
chr2	17959420	.	TAC	T,TACAC	188.6	PASS	AC=1,0;AF=0.564,0.115;AN=2;DP=796;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:15:99:3,5,2,5
chr2	17959443	.	A	G	172.69	PASS	AC=1;AF=0.604;AN=2;DP=288;set=variant-variant4-variant6-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant19-variant21-variant23-variant26-variant27-variant29-variant30-variant32-variant34-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:282,0,147:0,4,2,5
chr2	17962450	.	A	G	1297.68	PASS	AC=1;AF=0.714;AN=2;DP=3464;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:1030,0,1178:29,22,16,23
chr2	17962518	.	C	T	1547.34	PASS	AC=2;AF=0.756;AN=2;DP=4703;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2925,260,0:0,0,39,48
chr2	17965699	.	C	T	905.36	PASS	AC=1;AF=0.5;AN=2;DP=565;MQ=60;set=variant3-variant10-variant11-variant19-variant24-variant25-variant32-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:723,0,767:10,11,9,12
chr2	17965931	.	G	A	6569.43	PASS	AC=1;AF=0.714;AN=2;DP=13970;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:195,178:373:99:4294,0,4905:109,86,93,85
chr2	17966157	.	A	G	2410.3	PASS	AC=2;AF=0.756;AN=2;DP=5850;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:4062,362,0:0,0,33,88
chr2	17966421	.	T	G	688.69	PASS	AC=2;AF=0.756;AN=2;DP=1637;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1374,111,0:0,0,31,6
chr2	17980511	.	A	T	461.69	PASS	AC=1;AF=0.615;AN=2;DP=1127;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant26-variant27-variant29-variant30-variant32-variant34-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,29:61:99:660,0,753:13,19,13,16
chr2	17980541	.	C	G	441.49	PASS	AC=1;AF=0.635;AN=2;DP=838;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant26-variant27-variant29-variant30-variant32-variant34-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:590,0,777:10,20,10,16
chr2	17980834	.	G	A	185.36	PASS	AC=1;AF=0.5;AN=2;DP=258;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant14-variant15-variant17-variant21-variant29-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:227,0,269:7,4,6,4
chr2	17981258	.	C	T	390.93	PASS	AC=1;AF=0.694;AN=2;DP=773;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:352,0,298:7,2,7,5
chr2	17981308	.	G	T	753.51	PASS	AC=2;AF=0.732;AN=2;DP=1829;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,35:36:66:1435,66,0:1,0,25,10
chr2	17981319	.	C	A	1557.2	PASS	AC=1;AF=0.636;AN=2;DP=1223;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant10-variant11-variant12-variant13-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:661,0,831:20,5,17,6
chr2	17981360	.	G	A	1858.14	PASS	AC=2;AF=0.732;AN=2;DP=4198;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,98:100:99:3061,249,0:1,1,66,32
chr2	17981399	.	A	G	2203.28	PASS	AC=2;AF=0.756;AN=2;DP=6060;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4085,400,0:0,0,81,53
chr2	17981589	.	G	A	637.25	PASS	AC=1;AF=0.694;AN=2;DP=1442;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:624,0,361:2,10,4,16
chr2	17998025	.	A	T	4287.49	PASS	AC=1;AF=0.718;AN=2;DP=6087;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,81:160:99:2263,0,2118:32,47,34,47
chr2	17998095	.	C	T	3441.91	PASS	AC=1;AF=0.705;AN=2;DP=4676;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,67:123:99:1847,0,1544:27,29,39,28
chr2	17998331	.	T	C	1017.48	PASS	AC=1;AF=0.711;AN=2;DP=5671;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,75:127:99:1960,0,1314:23,29,32,43
chr2	18059381	.	A	G	359.52	PASS	AC=2;AF=0.952;AN=2;DP=479;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:241,21,0:0,0,1,6
chr2	18059890	.	G	A	885.74	PASS	AC=1;AF=0.643;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant20-variant26-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:67:67,0,76:2,1,1,2
chr2	18059912	.	T	C	66.22	PASS	AC=2;AF=0.94;AN=2;DP=529;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:353,30,0:0,0,8,2
chr2	18112473	.	G	A	5902.49	PASS	AC=2;AF=1;AN=2;DP=7849;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,197:197:99:6228,589,0:0,0,95,102
chr2	18113508	.	G	A	1868.05	PASS	AC=1;AF=0.533;AN=2;DP=2855;MQ=60;set=variant2-variant3-variant4-variant13-variant14-variant15-variant17-variant18-variant20-variant26-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,85:156:99:2052,0,1777:35,36,43,42
chr2	18113623	.	A	G	1972.33	PASS	AC=1;AF=0.72;AN=2;DP=5738;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,66:132:99:1780,0,1647:29,37,34,32
chr2	18744332	.	CT	C,CTT	217.36	PASS	AC=1,0;AF=0.196,0.304;AN=2;DP=4633;MQ=60;set=filterInvariant2-variant7-filterInvariant8-filterInvariant9-variant10-filterInvariant12-filterInvariant13-variant14-variant17-variant19-variant20-filterInvariant22-filterInvariant24-filterInvariant25-variant29-variant31-variant32-variant33-variant35-variant38-variant39-filterInvariant41-variant42	GT:DP:GQ:SB	0/1:154:99:48,78,11,17
chr2	18767384	.	G	T	410.63	PASS	AC=2;AF=0.571;AN=2;DP=282;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant11-variant14-variant15-variant16-variant19-variant21-variant24-variant25-variant28-variant31-variant32-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:390,27,0:0,0,9,0
chr2	18767682	.	C	T	1171.61	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=1.877;FractionInformativeReads=1;MQ=60;MQRankSum=0.842;QD=14.83;ReadPosRankSum=-0.192;SOR=0.493;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,43:79:99:1200,0,942:13,23,18,25
chr2	19558292	.	G	C	676.52	PASS	AC=1;AF=0.5;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant24-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:305,0,217:4,5,7,7
chr2	20101222	.	GA	G	4685.62	PASS	AC=2;AF=0.919;AN=2;DP=4886;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:4055,343,0:0,0,42,72
chr2	20131079	.	T	C	1019.97	PASS	AC=1;AF=0.641;AN=2;DP=2424;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,48:86:99:1072,0,964:18,20,23,25
chr2	20131184	.	C	A	1462.08	PASS	AC=1;AF=0.989;AN=2;DP=1510;MQ=60;MQRankSum=0.201;ReadPosRankSum=0.755;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:502,0,544:5,16,7,14
chr2	20201922	.	T	TAC,TACAC,TACACACACAC	121.65	PASS	AC=0,1,0;AF=0.3,0.1,0.1;AN=2;DP=95;MQ=60;set=variant20-variant14-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:15:99:2,5,2,6
chr2	20232287	.	C	T	294.86	PASS	AC=1;AF=0.716;AN=2;DP=701;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:349,0,369:10,1,10,0
chr2	20233135	.	T	C	351.06	PASS	AC=1;AF=0.722;AN=2;DP=560;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,10:12:55:402,0,55:1,1,1,9
chr2	20233929	.	C	T	205.98	PASS	AC=1;AF=0.667;AN=2;DP=97;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant11-variant14-variant19-variant24-variant26-variant33-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:92:92,0,120:3,1,3,0
chr2	20234523	.	C	T	841.17	PASS	AC=2;AF=0.966;AN=2;DP=1284;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1373,111,0:0,0,30,7
chr2	20237512	.	TA	T	44.71	PASS	AC=2;AF=0.875;AN=2;DP=26;FS=0;MQ=60;MQRankSum=-0.198;ReadPosRankSum=1.495;set=variant10-variant13-variant24-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:69,9,0:0,0,1,2
chr2	20251675	.	G	C	504.61	PASS	AC=1;AF=0.652;AN=2;DP=2292;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,40:76:99:1014,0,994:16,20,14,26
chr2	20302483	.	G	GAA	208.06	PASS	AC=1;AF=0.538;AN=2;DP=596;set=variant3-variant9-variant13-variant16-variant17-variant21-variant29-variant30-variant31-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:190,0,249:8,0,5,0
chr2	20302484	.	GAGAAGGAGA	GAAGAAGAAGAAGGAGA,G,GAAGAAGAAGAAGAAGGAGA,GAAGAAGGAGA,GAAGAAGAAGAAGAAGAAGGAGA,GAAGAAGAAGAAGAAGAAGAAGAAGGAGA	208.19	PASS	AC=0,0,0,0,1,0;AF=0.25,0.036,0.071,0.036,0.071,0.036;AN=2;DP=676;set=variant3-variant6-variant9-variant13-variant16-variant17-variant21-variant29-filterInvariant30-variant31-variant36-variant38-variant41-variant42	GT:DP:GQ:SB	0/5:25:99:14,6,5,0
chr2	20302490	.	G	GAGA,A,GAGAAGGAGAAGAAGAAGAAGAAGAAGAAGA,GAGAAGAAGA,GAGAAGAAGAAGAAGA,GAGAAGAAGAAGAAGAAGAAGA	577.65	PASS	AC=0,1,0,0,0,1;AF=0.275,0.375,0.025,0.05,0.025,0.025;AN=2;DP=1109;set=variant13-variant9-variant16-variant18-variant20-variant3-variant21-variant26-variant27-variant17-variant29-variant11-variant30-variant31-variant32-variant36-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	2/6:30:99:0,0,20,10
chr2	20302527	.	C	T,A	746.7	PASS	AC=0,1;AF=0.594,0.063;AN=2;DP=1371;set=variant-variant2-variant4-variant5-variant6-variant14-variant15-variant18-variant19-variant24-variant26-variant32-variant33-variant37-variant41-variant44	GT:DP:GQ:SB	0/2:68:99:20,16,18,14
chr2	20320479	.	AG	A	153.84	PASS	AC=1;AF=0.563;AN=2;DP=178;set=variant5-variant14-variant15-variant20-variant27-variant29-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,8:10:1:265,0,1:1,1,8,0
chr2	20320493	.	G	A	41.82	PASS	AC=2;AF=0.675;AN=2;DP=558;set=filterInvariant-variant5-variant10-variant13-variant14-variant15-variant19-variant20-variant26-variant27-variant30-filterInvariant31-filterInvariant33-variant35-filterInvariant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,10:11:21:368,21,0:1,0,9,1
chr2	20400556	.	T	C	2701.91	PASS	AC=2;AF=0.989;AN=2;DP=4521;MQ=60;MQRankSum=1.265;ReadPosRankSum=-2.706;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3227,288,0:0,0,62,34
chr2	20401858	.	TAA	TA,T	274.12	PASS	AC=1,1;AF=0.529,0.071;AN=2;DP=1373;set=variant-variant2-filterInvariant3-variant4-filterInvariant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:42:99:3,0,22,17
chr2	20403794	.	A	T	6751.11	PASS	AC=2;AF=1;AN=2;DP=8927;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,207:207:99:6208,617,0:0,0,110,97
chr2	20404119	.	T	G	46.87	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=30;FS=24.817;FractionInformativeReads=0.967;MQ=60;MQRankSum=0.756;QD=1.56;ReadPosRankSum=-3.44;SOR=4.4;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:21,8:29:75:75,0,502:13,8,0,8
chr2	20405004	.	C	T	104.2	PASS	AC=1;AF=0.577;AN=2;DP=383;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant20-variant22-variant23-variant25-variant26-variant29-variant30-variant34-variant35-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:106,0,225:5,2,3,1
chr2	20405050	.	A	C	911.08	PASS	AC=2;AF=1;AN=2;DP=1463;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:913,81,0:0,0,21,6
chr2	20423154	.	A	G	1394.14	PASS	AC=2;AF=1;AN=2;DP=2563;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1854,174,0:0,0,17,41
chr2	20449174	.	G	A	3923.68	PASS	AC=1;AF=0.63;AN=2;DP=3155;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant23-variant25-variant26-variant30-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,64:116:99:1894,0,1445:38,14,45,19
chr2	20455176	.	GT	G	430.54	PASS	AC=1;AF=0.621;AN=2;DP=812;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,13:19:99:283,0,99:0,6,0,13
chr2	20462852	.	G	C	156.22	PASS	AC=1;AF=0.667;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant15-variant17-variant18-variant23-variant26-variant30-variant32-variant33-variant34-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:75:75,0,79:2,0,2,0
chr2	20525948	.	T	C	1314.28	PASS	AC=1;AF=0.65;AN=2;DP=1211;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant15-variant17-variant18-variant19-variant22-variant23-variant25-variant26-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:665,0,818:20,8,17,3
chr2	20648211	.	G	T	1649.99	PASS	AC=1;AF=0.578;AN=2;DP=1828;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,17:44:99:399,0,825:13,14,6,11
chr2	20648933	.	A	AT	5719.06	PASS	AC=1;AF=0.609;AN=2;DP=8010;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:101,81:182:99:1566,0,2004:34,67,24,57
chr2	20699667	.	C	G	216.52	PASS	AC=1;AF=0.854;AN=2;DP=603;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:227,0,106:3,2,4,4
chr2	20699997	.	C	T	217.45	PASS	AC=1;AF=0.567;AN=2;DP=194;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant9-variant13-variant14-variant16-variant21-variant22-variant24-variant28-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:252,0,351:5,5,0,7
chr2	20700900	.	A	G	2461.57	PASS	AC=2;AF=1;AN=2;DP=5563;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3105,285,0:0,0,44,51
chr2	20729143	.	C	CT,CTT,CTTTTTT,CTTT	143.47	PASS	AC=0,2,0,0;AF=0.308,0.487,0.026,0.038;AN=2;DP=479;FS=0;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:5:15:0,0,3,2
chr2	20817777	.	C	T	1487.63	PASS	AC=2;AF=0.579;AN=2;DP=2823;MQ=60;set=variant6-variant7-variant8-variant14-variant16-variant18-variant19-variant21-variant23-variant24-variant26-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4202,407,0:0,0,61,75
chr2	20818193	.	G	A	1293.97	PASS	AC=2;AF=0.81;AN=2;DP=2720;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2323,245,0:0,0,41,42
chr2	20818286	.	A	C	1709.23	PASS	AC=2;AF=0.81;AN=2;DP=3428;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3068,305,0:0,0,46,56
chr2	20818454	.	T	A	1933.66	PASS	AC=2;AF=0.81;AN=2;DP=3992;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:4060,285,0:0,0,51,41
chr2	20818458	.	G	A	2274.99	PASS	AC=2;AF=0.583;AN=2;DP=1767;MQ=60;set=variant6-variant7-variant8-variant14-variant16-variant18-variant19-variant21-variant23-variant24-variant26-variant32-variant34-variant35-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:4085,288,0:0,0,52,42
chr2	20822218	.	T	C	1731.8	PASS	AC=2;AF=1;AN=2;DP=2062;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1486,128,0:0,0,23,20
chr2	20822486	.	G	C	2950.38	PASS	AC=2;AF=0.655;AN=2;DP=2042;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1771,159,0:0,0,28,25
chr2	20822694	.	C	T	538.43	PASS	AC=2;AF=0.579;AN=2;DP=594;MQ=60;set=variant6-variant7-variant8-variant14-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant32-variant34-variant35-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:702,60,0:0,0,7,13
chr2	20823252	.	A	G	1044.44	PASS	AC=2;AF=0.81;AN=2;DP=2598;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1901,201,0:0,0,32,35
chr2	20823612	.	A	G	2007.24	PASS	AC=2;AF=0.81;AN=2;DP=2916;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1884,200,0:0,0,38,29
chr2	20823724	.	T	C	3394.59	PASS	AC=2;AF=1;AN=2;DP=4321;FS=0;MQRankSum=-0.17;ReadPosRankSum=-0.509;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2185,221,0:0,0,35,39
chr2	20823816	.	G	T,A	825.57	PASS	AC=2,0;AF=0.537,0.093;AN=2;DP=2069;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43	GT:DP:GQ:SB	1/1:47:99:0,0,19,28
chr2	20823850	.	T	C	2752.22	PASS	AC=2;AF=1;AN=2;DP=2637;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1205,114,0:0,0,14,24
chr2	20824559	.	C	T	1126.81	PASS	AC=2;AF=0.583;AN=2;DP=2393;MQ=60;set=variant6-variant7-variant8-variant14-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant32-variant34-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,124:125:99:3838,364,0:1,0,65,59
chr2	20824658	.	G	A	930.57	PASS	AC=2;AF=0.579;AN=2;DP=2127;MQ=60;set=variant6-variant7-variant8-variant14-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant32-variant34-variant35-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2451,242,0:0,0,34,47
chr2	20824708	.	T	C	1110.02	PASS	AC=2;AF=0.574;AN=2;DP=2145;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1718,158,0:0,0,16,37
chr2	20836787	.	T	TG	809.53	PASS	AC=2;AF=0.609;AN=2;DP=894;set=variant4-variant6-variant7-variant8-variant14-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:4,25:29:32:865,32,0:4,0,6,19
chr2	20836794	.	G	C	174.1	PASS	AC=2;AF=0.652;AN=2;DP=1307;set=variant-filterInvariant3-variant4-filterInvariant5-variant6-variant7-variant8-filterInvariant10-variant12-filterInvariant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1536,105,0:0,0,10,23
chr2	20836798	.	C	CA	593.27	PASS	AC=2;AF=0.571;AN=2;DP=769;set=variant6-variant7-variant8-variant14-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:4,29:33:44:970,44,0:4,0,8,21
chr2	20836932	.	G	T	783.75	PASS	AC=2;AF=1;AN=2;DP=2399;FS=0;MQ=60;MQRankSum=0.075;ReadPosRankSum=0.226;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1310,123,0:0,0,23,18
chr2	20837127	.	T	C	1646.49	PASS	AC=2;AF=1;AN=2;DP=2833;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2193,198,0:0,0,37,29
chr2	20837469	.	C	T	905.6	PASS	AC=2;AF=0.575;AN=2;DP=1309;MQ=60;set=variant4-variant7-variant8-variant14-variant16-variant18-variant19-variant21-variant23-variant24-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1716,162,0:0,0,22,32
chr2	20838318	.	G	A	1381.83	PASS	AC=2;AF=0.579;AN=2;DP=2321;MQ=60;set=variant4-variant7-variant8-variant14-variant16-variant18-variant19-variant21-variant23-variant24-variant31-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4013,398,0:0,0,68,65
chr2	20845273	.	G	A	495.96	PASS	AC=2;AF=0.724;AN=2;DP=2180;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1633,150,0:0,0,17,33
chr2	20866493	.	T	TGGAGGGCGAGCCCTTCCGCGGCCC	1261.41	PASS	AC=2;AF=0.731;AN=2;DP=1758;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:99:1767,120,0:0,0,16,15
chr2	20866720	.	G	C	2733.32	PASS	AC=2;AF=0.75;AN=2;DP=3071;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1330,143,0:0,0,24,24
chr2	20867122	.	G	GGGCGGCGGC,GGGCGGCGGCGGCGGCGGC,GGGCGGCGGCGGCGGC,GGGCGGCGGCGGC	322.17	PASS	AC=2,0,0,0;AF=0.765,0.162,0.029,0.029;AN=2;DP=321;FS=0;MQ=60;MQRankSum=0.633;ReadPosRankSum=0.633;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:9:27:0,0,4,5
chr2	20870579	.	G	A	2202.29	PASS	AC=1;AF=0.732;AN=2;DP=3285;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,33:76:99:810,0,1145:18,25,15,18
chr2	20871190	.	A	C	4408.58	PASS	AC=2;AF=1;AN=2;DP=7071;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,147:147:99:4958,439,0:0,0,60,87
chr2	20871293	.	A	G	3083.23	PASS	AC=2;AF=1;AN=2;DP=5674;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:3947,380,0:0,0,59,68
chr2	20871398	.	T	C	3472.02	PASS	AC=1;AF=0.56;AN=2;DP=2778;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,52:122:99:1407,0,1683:37,33,27,25
chr2	20871867	.	ACCCCC	AC,A,ACC	4105.61	PASS	AC=1,0,0;AF=0.716,0.182,0.057;AN=2;DP=2722;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:27:99:2,3,10,12
chr2	20871874	.	C	A	4141.33	PASS	AC=1;AF=0.756;AN=2;DP=2477;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,22:27:97:878,0,97:2,3,10,12
chr2	20871877	.	C	A	2140.1	PASS	AC=1;AF=0.72;AN=2;DP=2355;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,24:30:99:875,0,118:2,4,10,14
chr2	20871887	.	CTT	CTTT,CT,CTTTT,C,CTTTTT	310.95	PASS	AC=1,0,0,0,0;AF=0.125,0.328,0.047,0.016,0.016;AN=2;DP=1524;set=variant-variant3-variant4-variant5-filterInvariant6-variant7-variant10-variant12-variant13-variant14-variant16-variant17-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:16:71:3,4,3,6
chr2	20871918	.	T	C	399.85	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=2.694;FractionInformativeReads=1;MQ=60;MQRankSum=0.962;QD=23.52;ReadPosRankSum=0.396;SOR=2.147;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,13:17:70:428,0,70:2,2,3,10
chr2	20872326	.	C	G	1380.14	PASS	AC=1;AF=0.54;AN=2;DP=2231;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant30-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,42:76:99:1056,0,975:20,14,22,20
chr2	20872962	.	G	GA,A	7404.75	PASS	AC=1,0;AF=0.194,0.486;AN=2;DP=8968;set=variant12-variant15-variant16-variant17-variant18-variant19-variant4-variant3-variant20-variant21-variant6-variant-variant22-variant23-variant25-variant8-variant14-variant26-variant28-variant29-variant30-variant9-variant31-variant32-variant33-variant34-variant11-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:234:99:67,63,55,49
chr2	20873099	.	T	A	11269.5	PASS	AC=2;AF=0.653;AN=2;DP=10782;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,274:274:99:8143,821,0:0,0,117,157
chr2	20873333	.	G	A	3107.71	PASS	AC=2;AF=0.653;AN=2;DP=3235;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,68:69:99:2071,170,0:1,0,32,36
chr2	20883652	.	GGTGAA	G	1091.35	PASS	AC=1;AF=0.607;AN=2;DP=942;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:569,0,915:14,7,11,5
chr2	20884368	.	T	C	359.6	PASS	AC=1;AF=0.575;AN=2;DP=1224;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant15-variant16-variant18-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,25:58:99:651,0,904:18,15,16,9
chr2	20884550	.	C	A	1152.01	PASS	AC=1;AF=0.575;AN=2;DP=2454;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant15-variant16-variant18-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:79,67:146:99:1532,0,2108:43,36,35,32
chr2	20990122	.	G	A	869.37	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=4.664;FractionInformativeReads=1;MQ=60;MQRankSum=-0.812;QD=14.74;ReadPosRankSum=3.802;SOR=0.25;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:898,0,787:4,24,8,23
chr2	21022785	.	G	A	716.11	PASS	AC=1;AF=0.5;AN=2;DP=113;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:670,0,658:15,10,19,6
chr2	21022941	.	T	A	766.64	PASS	AC=1;AF=0.5;AN=2;DP=367;FractionInformativeReads=1;MQ=60;set=variant7-variant12-variant22-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,50:90:99:1258,0,917:17,23,23,27
chr2	21225281	.	C	T	3009.38	PASS	AC=2;AF=0.849;AN=2;DP=4523;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3777,326,0:0,0,46,63
chr2	21229039	.	C	T	1130.69	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=5.22;FractionInformativeReads=1;MQ=60;MQRankSum=-1.76;QD=11.9;ReadPosRankSum=-0.435;SOR=0.34;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,47:95:99:1159,0,1262:17,31,22,25
chr2	21230451	.	TA	T	1717.66	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=0.735;FractionInformativeReads=1;MQ=60;MQRankSum=-1.231;QD=16.84;ReadPosRankSum=2.443;SOR=0.619;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,51:102:99:1755,0,1716:21,30,22,29
chr2	21232803	.	T	C	4714.59	PASS	AC=2;AF=1;AN=2;DP=5520;FS=0;MQ=60;MQRankSum=1.119;ReadPosRankSum=-0.08;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3252,318,0:0,0,46,60
chr2	21235375	.	G	A	1671.73	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=8.903;FractionInformativeReads=1;MQ=60;MQRankSum=1.161;QD=11.86;ReadPosRankSum=1.243;SOR=0.409;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,70:141:99:1700,0,1850:44,27,34,36
chr2	21235475	.	T	C	3349.77	PASS	AC=2;AF=1;AN=2;DP=4494;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3230,282,0:0,0,36,58
chr2	21236482	.	A	G	1337.74	PASS	AC=2;AF=1;AN=2;DP=2004;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1351,126,0:0,0,16,26
chr2	21237450	.	G	T	906.01	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=1.782;FractionInformativeReads=1;MQ=60;MQRankSum=0.136;QD=10.66;ReadPosRankSum=-1.499;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:934,0,1088:19,23,17,26
chr2	21238007	.	G	T	918.76	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.192;QD=7.99;ReadPosRankSum=-0.341;SOR=0.629;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,45:115:99:947,0,1847:40,30,25,20
chr2	21246306	.	G	C	240.52	PASS	AC=2;AF=0.55;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant19-variant22-variant27-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1490,126,0:0,0,31,11
chr2	21247750	.	T	TA	1633.69	PASS	AC=1;AF=0.5;AN=2;DP=153;FS=1.296;FractionInformativeReads=0.954;MQ=60;MQRankSum=-0.863;QD=10.68;ReadPosRankSum=-1.333;SOR=0.586;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,74:146:99:1671,0,1626:31,41,34,40
chr2	21251040	.	T	G	1559.69	PASS	AC=1;AF=0.886;AN=2;DP=1544;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:314,0,342:5,4,5,5
chr2	21255573	.	C	CCATCT	356.92	PASS	AC=1;AF=0.886;AN=2;DP=1244;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:780,0,1237:3,15,1,19
chr2	21260934	.	G	A	657.38	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=3.367;FractionInformativeReads=1;MQ=60;MQRankSum=-1.765;QD=9.13;ReadPosRankSum=0.497;SOR=0.382;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,30:72:99:686,0,1112:13,29,12,18
chr2	21263639	.	T	G	270.93	PASS	AC=1;AF=0.767;AN=2;DP=750;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:255,0,270:7,0,6,1
chr2	21265518	.	A	T	427.39	PASS	AC=1;AF=0.529;AN=2;DP=270;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant9-variant12-variant16-variant17-variant22-variant23-variant25-variant27-variant31-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,16:25:99:402,0,281:1,8,6,10
chr2	21266932	.	G	C	805.22	PASS	AC=1;AF=0.5;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,29:59:99:828,0,781:13,17,12,17
chr2	23608319	.	A	AGCC,AGCCGCC	511.87	PASS	AC=2,0;AF=0.56,0.02;AN=2;DP=925;set=variant-variant4-variant9-variant12-variant13-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:45:99:0,0,24,21
chr2	23608644	.	C	CG	669.41	PASS	AC=2;AF=1;AN=2;DP=932;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:78:962,78,0:0,0,8,17
chr2	23785517	.	A	G	262.31	PASS	AC=2;AF=0.841;AN=2;DP=819;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:819,60,0:0,0,6,14
chr2	23785524	.	C	A	217.56	PASS	AC=1;AF=0.776;AN=2;DP=688;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:392,0,219:3,5,3,9
chr2	23859550	.	G	A	111.44	PASS	AC=1;AF=0.55;AN=2;DP=135;FractionInformativeReads=1;MQ=60;set=variant7-variant13-variant15-variant16-variant27-variant29-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:183,0,268:7,2,4,1
chr2	23862187	.	C	G	1075.51	PASS	AC=1;AF=0.621;AN=2;DP=2459;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,36:63:99:898,0,664:10,17,15,21
chr2	23865014	.	G	A	328.29	PASS	AC=1;AF=0.618;AN=2;DP=2184;MQ=60;set=variant-variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,27:53:99:702,0,672:15,11,17,10
chr2	23865260	.	T	C	1265.87	PASS	AC=2;AF=0.775;AN=2;DP=5723;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4079,387,0:0,0,68,61
chr2	23865737	.	C	T	1548	PASS	AC=1;AF=0.5;AN=2;DP=163;FS=2.839;FractionInformativeReads=1;MQ=60;MQRankSum=0.62;QD=9.5;ReadPosRankSum=-1.663;SOR=0.969;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,64:163:99:1576,0,2469:48,51,27,37
chr2	23865908	.	G	C	860.51	PASS	AC=1;AF=0.618;AN=2;DP=3729;MQ=60;set=variant-variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,55:108:99:1331,0,1419:27,26,24,31
chr2	23914776	.	G	A	481.56	PASS	AC=1;AF=0.5;AN=2;DP=530;MQ=60;set=variant-variant9-variant17-variant24-variant27-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,45:94:99:1039,0,1218:19,30,16,29
chr2	23920609	.	G	C	1047.47	PASS	AC=2;AF=1;AN=2;DP=1748;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1010,93,0:0,0,12,19
chr2	23930352	.	G	A	416.6	PASS	AC=1;AF=0.5;AN=2;DP=228;MQ=60;set=variant-variant9-variant17-variant24-variant27-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:485,0,363:5,8,10,8
chr2	23973603	.	A	G	5544.95	PASS	AC=1;AF=0.529;AN=2;DP=6312;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant18-variant19-variant21-variant22-variant28-variant34-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:182,179:361:99:4440,0,4706:103,79,95,84
chr2	24042550	.	C	T	907.81	PASS	AC=2;AF=0.966;AN=2;DP=1212;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1096,96,0:0,0,23,9
chr2	24046426	.	G	A	638	PASS	AC=1;AF=0.5;AN=2;DP=496;MQ=60;set=variant-variant9-variant17-variant24-variant27-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,31:70:99:906,0,929:16,23,14,17
chr2	24055058	.	G	C	7125.65	PASS	AC=1;AF=0.955;AN=2;DP=8203;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:71,86:157:99:2180,0,1719:33,38,39,47
chr2	24055346	.	TTAAC	T	289.58	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=3.791;FractionInformativeReads=0.929;MQ=60;MQRankSum=0.269;QD=10.34;ReadPosRankSum=0.323;SOR=1.561;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:327,0,959:7,10,2,7
chr2	24079058	.	CA	C,CAA,CAAA,CAAAA	128.69	PASS	AC=1,0,0,0;AF=0.393,0.036,0.048,0.024;AN=2;DP=1949;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:23:99:14,1,8,0
chr2	24079163	.	C	T	2476.63	PASS	AC=1;AF=0.5;AN=2;DP=203;FS=1.102;FractionInformativeReads=1;MQ=60;MQRankSum=-1.253;QD=12.2;ReadPosRankSum=0.654;SOR=0.786;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:100,103:203:99:2505,0,2384:59,41,63,40
chr2	24080274	.	A	G	852.99	PASS	AC=1;AF=0.5;AN=2;DP=336;FractionInformativeReads=1;MQ=60;set=variant12-variant18-variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,43:83:99:1017,0,954:17,23,22,21
chr2	24108557	.	G	A	473.72	PASS	AC=1;AF=0.5;AN=2;DP=648;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant18-variant19-variant21-variant22-variant28-variant34-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:484,0,410:11,5,11,9
chr2	24108652	.	T	C	3670.2	PASS	AC=2;AF=1;AN=2;DP=4396;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:2987,302,0:0,0,56,45
chr2	24111210	.	G	C	576.16	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0.949;FractionInformativeReads=1;MQ=60;MQRankSum=-1.14;QD=8.47;ReadPosRankSum=-2.05;SOR=0.93;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,28:68:99:604,0,974:22,18,17,11
chr2	24150163	.	C	G	2276.37	PASS	AC=1;AF=0.529;AN=2;DP=1581;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant18-variant19-variant21-variant22-variant28-variant34-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,38:61:99:1045,0,585:14,9,24,14
chr2	24150503	.	A	AG,AGG	96.2	PASS	AC=1,0;AF=0.091,0.5;AN=2;DP=164;MQ=60;set=variant11-variant12-variant15-variant17-variant18-variant29-variant33-variant34-variant35-variant36-variant41	GT:DP:GQ:SB	0/1:6:36:0,2,2,2
chr2	24162663	.	G	T	181.07	PASS	AC=1;AF=0.567;AN=2;DP=255;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant18-variant19-variant21-variant28-variant34-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:251,0,212:4,4,2,7
chr2	24163323	.	G	A	683.8	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.2;QD=10.36;ReadPosRankSum=-1.294;SOR=0.713;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:712,0,792:19,17,16,14
chr2	24181159	.	G	T	804.06	PASS	AC=1;AF=0.559;AN=2;DP=976;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant18-variant19-variant21-variant22-variant28-variant34-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,22:37:99:548,0,466:13,2,13,9
chr2	24191803	.	G	A	79.45	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;MQ=60;set=variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,119:1,3,0,2
chr2	24222961	.	TAG	T	1234.13	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=8.351;FractionInformativeReads=0.973;MQ=60;MQRankSum=-2.208;QD=16.91;ReadPosRankSum=0.859;SOR=1.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,33:71:99:1271,0,1581:17,21,9,24
chr2	24225621	.	T	C	598.06	PASS	AC=1;AF=0.845;AN=2;DP=852;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,8:28:99:175,0,576:10,10,3,5
chr2	24226594	.	C	A	117.13	PASS	AC=1;AF=0.5;AN=2;DP=67;MQ=60;set=variant27-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:113,0,106:3,3,1,8
chr2	24227107	.	C	CTG	8473.78	PASS	AC=1;AF=0.826;AN=2;DP=7374;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,90:173:99:3563,0,3652:44,39,44,46
chr2	24236392	.	G	A	73.47	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.58;QD=7.35;ReadPosRankSum=-0.731;SOR=0.836;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:102,0,238:1,6,0,3
chr2	24246175	.	C	T	2483.98	PASS	AC=1;AF=0.826;AN=2;DP=3384;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,44:86:99:1180,0,1234:9,33,14,30
chr2	24246679	.	A	G	2371.08	PASS	AC=1;AF=0.826;AN=2;DP=3004;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:800,0,784:9,20,6,22
chr2	24247241	.	C	A	851.2	PASS	AC=1;AF=0.5;AN=2;DP=260;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant16-variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,21:49:99:444,0,692:12,16,9,12
chr2	24252417	.	T	C	2570.52	PASS	AC=1;AF=0.721;AN=2;DP=3141;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,39:78:99:1059,0,1236:13,26,19,20
chr2	24255862	.	C	G	1568.84	PASS	AC=2;AF=1;AN=2;DP=1618;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.867;ReadPosRankSum=0.124;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:861,69,0:0,0,11,12
chr2	24270053	.	T	C	112.55	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:83:83,0,166:2,3,2,2
chr2	24338777	.	CAAAA	CAA,CAAA,CA,C	98.98	PASS	AC=0,1,0,0;AF=0.214,0.393,0.071,0.018;AN=2;DP=500;set=variant2-variant3-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:11:0:0,2,3,6
chr2	24345324	.	C	T	1119	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=1.885;FractionInformativeReads=1;MQ=60;MQRankSum=0.868;QD=14.16;ReadPosRankSum=-1.967;SOR=0.936;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,41:79:99:1147,0,937:23,15,27,14
chr2	24369674	.	C	T	2616.76	PASS	AC=2;AF=0.966;AN=2;DP=3877;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2717,251,0:0,0,50,34
chr2	24384424	.	T	C	2155.9	PASS	AC=2;AF=0.955;AN=2;DP=2975;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:91:1384,91,0:0,0,23,22
chr2	24387178	.	G	GC	1322.19	PASS	AC=2;AF=0.989;AN=2;DP=2183;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2123,171,0:0,0,22,35
chr2	24388096	.	G	A	370.97	PASS	AC=2;AF=0.955;AN=2;DP=1052;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:806,69,0:0,0,18,5
chr2	24390517	.	G	A	2588.3	PASS	AC=1;AF=0.782;AN=2;DP=3198;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,46:75:99:1160,0,761:14,15,21,25
chr2	24395269	.	T	C	693.41	PASS	AC=2;AF=0.955;AN=2;DP=472;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:418,36,0:0,0,9,3
chr2	24395294	.	T	C	1117.59	PASS	AC=2;AF=0.955;AN=2;DP=959;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:514,48,0:0,0,11,5
chr2	24395506	.	T	C	1247.37	PASS	AC=2;AF=0.955;AN=2;DP=1535;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1057,96,0:0,0,11,21
chr2	24397791	.	T	C	62.98	PASS	AC=2;AF=0.963;AN=2;DP=307;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:300,30,0:0,0,3,7
chr2	24397866	.	T	G	235.43	PASS	AC=2;AF=1;AN=2;DP=476;FS=0;MQ=60;MQRankSum=1.085;ReadPosRankSum=0.434;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:321,33,0:0,0,6,5
chr2	24398281	.	T	G	1376.21	PASS	AC=2;AF=0.966;AN=2;DP=1705;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1116,102,0:0,0,23,11
chr2	24398446	.	A	T	2518.06	PASS	AC=2;AF=0.775;AN=2;DP=3276;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1898,186,0:0,0,25,37
chr2	24402127	.	C	CAA	1942.88	PASS	AC=2;AF=0.989;AN=2;DP=2049;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1834,123,0:0,0,17,24
chr2	24406430	.	A	G	851.21	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0.945;FractionInformativeReads=1;MQ=60;MQRankSum=-0.045;QD=12.9;ReadPosRankSum=-0.109;SOR=0.936;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,34:66:99:879,0,875:15,17,14,20
chr2	24413119	.	G	A	228.34	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.106;QD=10.87;ReadPosRankSum=1.514;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:257,0,259:7,3,7,4
chr2	24413611	.	A	G	1227.82	PASS	AC=1;AF=0.5;AN=2;DP=492;FractionInformativeReads=1;MQ=60;set=variant4-variant14-variant25-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,46:88:99:1065,0,1047:26,16,27,19
chr2	24414002	.	A	G	6353.67	PASS	AC=2;AF=0.786;AN=2;DP=6906;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:4421,419,0:0,0,72,68
chr2	24426588	.	A	G	1122.32	PASS	AC=1;AF=0.5;AN=2;DP=104;FS=0.718;FractionInformativeReads=1;MQ=60;MQRankSum=-1.245;QD=10.79;ReadPosRankSum=-2.415;SOR=0.77;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,52:104:99:1151,0,1241:26,26,25,27
chr2	24432211	.	C	T	1493.3	PASS	AC=2;AF=0.977;AN=2;DP=2156;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2207,204,0:0,0,25,43
chr2	24432620	.	A	G	1080.14	PASS	AC=2;AF=0.762;AN=2;DP=1464;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1448,122,0:0,0,32,9
chr2	24432667	.	C	G	2316.73	PASS	AC=2;AF=0.977;AN=2;DP=3393;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2833,270,0:0,0,59,31
chr2	24439276	.	G	C	150.23	PASS	AC=1;AF=0.565;AN=2;DP=330;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant25-variant31-variant32-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:328,0,365:1,10,1,9
chr2	24440997	.	A	T	556.6	PASS	AC=2;AF=0.989;AN=2;DP=1127;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:802,84,0:0,0,11,17
chr2	24443271	.	C	A	11570.4	PASS	AC=2;AF=0.786;AN=2;DP=13105;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,294:295:99:8822,872,0:0,1,149,145
chr2	24443330	.	A	G	10382.7	PASS	AC=2;AF=0.762;AN=2;DP=11380;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,262:263:99:8128,749,0:1,0,118,144
chr2	24475205	.	T	C	2877.97	PASS	AC=2;AF=1;AN=2;DP=3175;FS=0;MQ=60;MQRankSum=1.254;ReadPosRankSum=0.856;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2423,228,0:0,0,51,25
chr2	24484150	.	T	C	1319.12	PASS	AC=2;AF=0.989;AN=2;DP=1464;MQ=60;MQRankSum=-1.183;ReadPosRankSum=1.25;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1118,99,0:0,0,8,25
chr2	24498839	.	T	G	287.46	PASS	AC=2;AF=0.989;AN=2;DP=404;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.198;ReadPosRankSum=-0.922;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:383,27,0:0,0,0,9
chr2	24507757	.	ATTTT	ATT,A,AT,ATTT	392.18	PASS	AC=1,0,0,0;AF=0.257,0.1,0.229,0.043;AN=2;DP=1535;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-filterInvariant12-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:10:23:2,1,0,7
chr2	24521493	.	C	T	1619.58	PASS	AC=2;AF=0.989;AN=2;DP=2176;FS=0;MQ=60;MQRankSum=0.991;ReadPosRankSum=-1.664;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1265,117,0:0,0,26,13
chr2	24521766	.	C	T	498.96	PASS	AC=2;AF=0.989;AN=2;DP=617;FS=0;MQ=60;MQRankSum=0.727;ReadPosRankSum=-0.727;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:692,48,0:0,0,1,15
chr2	24550867	.	CAA	CA,C	878.68	PASS	AC=2,0;AF=0.898,0.08;AN=2;DP=2275;set=Intersection	GT:DP:GQ:SB	1/1:49:99:1,0,32,16
chr2	24583108	.	G	A	111.22	PASS	AC=2;AF=0.989;AN=2;DP=811;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:812,72,0:0,0,16,8
chr2	24583119	.	G	C	275.4	PASS	AC=2;AF=0.989;AN=2;DP=918;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:864,81,0:0,0,17,10
chr2	24583198	.	T	A	1307.3	PASS	AC=2;AF=0.989;AN=2;DP=2206;MQ=60;MQRankSum=-2.775;ReadPosRankSum=1.808;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1507,160,0:0,0,27,27
chr2	24583398	.	C	T	955.42	PASS	AC=2;AF=0.989;AN=2;DP=1551;MQ=60;MQRankSum=0.529;ReadPosRankSum=2.304;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1435,123,0:0,0,26,15
chr2	24583475	.	C	T	1705	PASS	AC=2;AF=0.989;AN=2;DP=2526;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1827,168,0:0,0,30,26
chr2	24583677	.	A	G	1178.6	PASS	AC=2;AF=0.989;AN=2;DP=1676;MQ=60;MQRankSum=0.568;ReadPosRankSum=0.178;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1274,119,0:0,0,13,27
chr2	24583719	.	G	C	785.95	PASS	AC=2;AF=0.989;AN=2;DP=895;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:611,57,0:0,0,5,14
chr2	24807533	.	C	T	4308.24	PASS	AC=1;AF=0.898;AN=2;DP=4910;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:61,60:121:99:1588,0,1551:20,41,19,41
chr2	24881666	.	C	A	1393.25	PASS	AC=1;AF=0.5;AN=2;DP=525;MQ=60;set=variant3-variant13-variant14-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,60:104:99:1530,0,1105:19,25,28,32
chr2	24896389	.	T	G	886.26	PASS	AC=1;AF=0.722;AN=2;DP=2129;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,34:62:99:837,0,666:10,18,12,22
chr2	24905684	.	C	CA	1256.12	PASS	AC=2;AF=0.92;AN=2;DP=858;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:564,42,0:0,0,13,1
chr2	24905927	.	G	C	5546.63	PASS	AC=1;AF=0.884;AN=2;DP=8579;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,83:180:99:1955,0,2502:38,59,33,50
chr2	24929851	.	A	T	1824.42	PASS	AC=1;AF=0.5;AN=2;DP=1069;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant13-variant14-variant22-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,51:94:99:1346,0,1305:13,30,19,32
chr2	24933689	.	A	C	713.62	PASS	AC=1;AF=0.884;AN=2;DP=1159;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,19:28:99:552,0,240:7,2,15,4
chr2	24949602	.	A	C	720.56	PASS	AC=1;AF=0.5;AN=2;DP=201;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant14-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:596,0,566:6,15,8,15
chr2	24952740	.	C	CT	1067.7	PASS	AC=2;AF=0.92;AN=2;DP=2332;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1767,132,0:0,0,14,30
chr2	24974945	.	T	G	1930.25	PASS	AC=1;AF=0.884;AN=2;DP=3514;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,37:68:99:996,0,813:18,13,21,16
chr2	24975122	.	T	C	1179.02	PASS	AC=1;AF=0.5;AN=2;DP=650;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant13-variant14-variant22-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,28:63:99:703,0,910:13,22,13,15
chr2	24985719	.	T	G	593.92	PASS	AC=1;AF=0.5;AN=2;DP=346;MQ=60;set=variant3-variant6-variant9-variant13-variant14-variant22-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:569,0,564:7,14,6,15
chr2	24991385	.	CAAAA	CA,CAAAAAAA,CAA,C,CAAA,CAAAAA	391.35	PASS	AC=0,0,0,0,0,1;AF=0.13,0.019,0.13,0.093,0.093,0.037;AN=2;DP=1386;set=variant2-variant3-variant5-variant7-variant8-variant10-variant14-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/6:26:93:12,4,6,4
chr2	25016459	.	C	A	767.82	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=2.791;FractionInformativeReads=1;MQ=60;MQRankSum=0.029;QD=15.36;ReadPosRankSum=1.486;SOR=0.337;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,26:50:99:796,0,685:5,19,8,18
chr2	25022442	.	TA	T	1010.49	PASS	AC=2;AF=0.8;AN=2;DP=883;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,25:26:50:590,50,0:1,0,17,8
chr2	25037042	.	G	A	275.88	PASS	AC=2;AF=0.712;AN=2;DP=327;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant22-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:428,33,0:0,0,10,1
chr2	25039492	.	G	A	616.98	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.481;QD=17.14;ReadPosRankSum=-2.471;SOR=0.873;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:645,0,443:11,4,16,5
chr2	25039804	.	G	A	1178.11	PASS	AC=2;AF=0.92;AN=2;DP=1188;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:773,69,0:0,0,6,17
chr2	25040423	.	G	A	775.03	PASS	AC=2;AF=0.763;AN=2;DP=1900;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1265,117,0:0,0,26,13
chr2	25042348	.	C	CACCTCACTCGGACCACATGGAG	744.1	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=0;FractionInformativeReads=0.703;MQ=60;MQRankSum=-0.425;QD=11.63;ReadPosRankSum=-1.069;SOR=0.793;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,19:45:99:781,0,1340:13,13,10,9
chr2	25042458	.	G	A	1164.96	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=2.683;FractionInformativeReads=1;MQ=60;MQRankSum=0.577;QD=12.26;ReadPosRankSum=0.659;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,47:95:99:1193,0,1278:24,24,27,20
chr2	25042625	.	C	G	2164.74	PASS	AC=2;AF=0.895;AN=2;DP=4625;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:3991,360,0:0,0,57,63
chr2	25043916	.	AC	A,ACC	1144.72	PASS	AC=1,0;AF=0.222,0.278;AN=2;DP=919;MQ=60;set=variant3-variant6-variant9-variant10-variant13-variant14-variant22-variant32-variant41	GT:DP:GQ:SB	0/1:97:99:13,30,18,36
chr2	25044754	.	A	G	982.24	PASS	AC=2;AF=0.686;AN=2;DP=2268;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:3231,217,0:0,0,32,39
chr2	25044755	.	C	T	982.24	PASS	AC=2;AF=0.686;AN=2;DP=2248;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:3231,217,0:0,0,32,38
chr2	25044763	.	A	G	862.29	PASS	AC=2;AF=0.686;AN=2;DP=2182;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:3052,205,0:0,0,33,35
chr2	25044866	.	G	A	511.77	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=1.064;FractionInformativeReads=1;MQ=60;MQRankSum=0.419;QD=9.14;ReadPosRankSum=0.675;SOR=0.504;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,20:56:99:540,0,850:16,20,10,10
chr2	25046090	.	T	C	821.77	PASS	AC=2;AF=0.784;AN=2;DP=1073;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1361,137,0:0,0,27,19
chr2	25046355	.	T	C	410.02	PASS	AC=2;AF=0.691;AN=2;DP=866;set=variant-variant2-variant3-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:689,57,0:0,0,6,13
chr2	25046361	.	AT	ATTT,ATT,A,ATTTT	530.92	PASS	AC=0,1,0,0;AF=0.229,0.329,0.071,0.014;AN=2;DP=767;set=variant-variant2-variant3-variant5-variant7-variant8-filterInvariant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:9:43:1,2,1,5
chr2	25047408	.	A	G	1089.02	PASS	AC=2;AF=0.632;AN=2;DP=5604;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:4852,500,0:0,0,75,92
chr2	25047533	.	G	A	253.53	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=1.773;FractionInformativeReads=1;MQ=60;MQRankSum=0.161;QD=8.74;ReadPosRankSum=2.959;SOR=0.33;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:282,0,635:4,15,3,7
chr2	25048847	.	A	G	976.64	PASS	AC=2;AF=0.784;AN=2;DP=2435;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3078,288,0:0,0,64,32
chr2	25050336	.	G	A	853.41	PASS	AC=1;AF=0.5;AN=2;DP=199;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:728,0,576:15,6,17,8
chr2	25050407	.	G	A	1190.08	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=7.247;FractionInformativeReads=1;MQ=60;MQRankSum=-0.371;QD=10.82;ReadPosRankSum=-0.759;SOR=1.097;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,55:110:99:1218,0,1288:26,29,33,22
chr2	25050640	.	G	A	960.63	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.152;QD=11.44;ReadPosRankSum=0.341;SOR=0.725;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,39:84:99:989,0,1280:25,20,22,17
chr2	25050977	.	T	C	1164.96	PASS	AC=2;AF=0.784;AN=2;DP=2844;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2409,234,0:0,0,30,48
chr2	25051113	.	C	T	198.7	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.831;QD=16.56;ReadPosRankSum=1;SOR=1.085;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:227,0,151:1,4,1,6
chr2	25053828	.	T	C	678.07	PASS	AC=2;AF=0.526;AN=2;DP=874;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant13-variant14-variant17-variant18-variant22-variant28-variant32-variant33-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1685,147,0:0,0,14,35
chr2	25054315	.	G	A	398.57	PASS	AC=1;AF=0.5;AN=2;DP=73;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:216,0,301:8,1,6,2
chr2	25059855	.	G	A	662.95	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=3.135;FractionInformativeReads=1;MQ=60;MQRankSum=1.556;QD=8.61;ReadPosRankSum=-2.589;SOR=0.397;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,32:77:99:691,0,1231:28,17,17,15
chr2	25061270	.	GGGGTGGGGTGGGTGGGGT	GGGGTGGGGT,G	418.87	PASS	AC=2,0;AF=0.786,0.024;AN=2;DP=311;MQ=60;set=variant3-variant4-variant6-variant11-variant14-variant16-variant20-variant21-variant23-variant25-variant26-variant29-variant30-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:22:27:2,1,19,0
chr2	25061578	.	G	A	1310.62	PASS	AC=2;AF=0.667;AN=2;DP=177;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2150,173,0:0,0,34,24
chr2	25061810	.	ATT	AT,ATTT,A	471.61	PASS	AC=1,0,1;AF=0.452,0.016,0.065;AN=2;DP=1881;set=variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-variant23-filterInvariant27-variant28-variant29-variant31-variant32-variant34-variant36-filterInvariant37-variant39-filterInvariant40-variant41-filterInvariant44	GT:DP:GQ:SB	3/1:36:99:0,1,6,29
chr2	25063428	.	G	T	2920.95	PASS	AC=1;AF=0.5;AN=2;DP=410;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,67:116:99:2594,0,1856:21,28,30,37
chr2	25063429	.	G	C	2920.95	PASS	AC=1;AF=0.5;AN=2;DP=407;FractionInformativeReads=1;MQ=60;set=variant3-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,67:116:99:2594,0,1856:21,28,30,37
chr2	25063486	.	C	T	615.06	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0;FractionInformativeReads=0.974;MQ=60;MQRankSum=1.631;QD=7.99;ReadPosRankSum=2.655;SOR=0.675;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,26:75:99:643,0,1326:17,32,9,17
chr2	25064370	.	G	A	398.11	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=9.024;FractionInformativeReads=1;MQ=60;MQRankSum=-1.086;QD=9.05;ReadPosRankSum=-1.818;SOR=1.523;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,16:44:99:426,0,792:12,16,11,5
chr2	25064443	.	G	C	737.88	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.227;QD=11.71;ReadPosRankSum=0.434;SOR=0.638;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:766,0,809:17,16,15,15
chr2	25065406	.	C	T	336.9	PASS	AC=1;AF=0.5;AN=2;DP=88;MQ=60;set=variant3-variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:394,0,539:4,14,3,10
chr2	25100648	.	C	A	118.19	PASS	AC=1;AF=0.5;AN=2;DP=20;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:196,0,112:3,2,5,1
chr2	25100738	.	C	A	721.55	PASS	AC=1;AF=0.692;AN=2;DP=956;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,27:53:99:613,0,676:17,9,16,11
chr2	25100902	.	C	G	1306.56	PASS	AC=2;AF=0.696;AN=2;DP=1567;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2276,225,0:0,0,28,47
chr2	25141434	.	G	A	856.96	PASS	AC=1;AF=0.5;AN=2;DP=951;MQ=60;set=variant2-variant3-variant8-variant11-variant17-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,42:72:99:1136,0,865:18,12,27,15
chr2	25141538	.	A	G	2444.45	PASS	AC=2;AF=0.683;AN=2;DP=6366;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,202:202:99:6093,606,0:0,0,112,90
chr2	25142806	.	T	G	131.06	PASS	AC=1;AF=0.591;AN=2;DP=123;MQ=60;set=variant2-variant3-variant8-variant11-variant12-variant17-variant19-variant25-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:267,0,180:3,5,5,7
chr2	25168477	.	A	G	1109.15	PASS	AC=1;AF=0.5;AN=2;DP=471;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant10-variant14-variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,41:75:99:1157,0,888:21,13,23,18
chr2	25169200	.	A	G	641.86	PASS	AC=2;AF=0.667;AN=2;DP=1031;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1064,105,0:0,0,17,18
chr2	25169312	.	G	A	414.7	PASS	AC=1;AF=0.5;AN=2;DP=177;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant14-variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,9:33:99:232,0,657:13,11,6,3
chr2	25170158	.	T	TC	1949.62	PASS	AC=1;AF=0.529;AN=2;DP=1753;MQ=60;set=variant-variant7-variant9-variant12-variant13-variant17-variant19-variant20-variant22-variant25-variant27-variant28-variant33-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,53:104:99:1553,0,1450:18,33,19,34
chr2	25190127	.	G	A	1362.24	PASS	AC=1;AF=0.5;AN=2;DP=597;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant10-variant14-variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,58:105:99:1456,0,1132:20,27,25,33
chr2	25194586	.	G	A	1668.68	PASS	AC=1;AF=0.5;AN=2;DP=628;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant10-variant14-variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,54:98:99:1408,0,1367:36,8,38,16
chr2	25194741	.	G	A	3578.25	PASS	AC=1;AF=0.814;AN=2;DP=14128;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:147,144:291:99:3521,0,3647:68,79,65,79
chr2	25354091	.	G	C	350.57	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=0;FractionInformativeReads=1;MQ=60;set=variant7-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:473,0,282:8,4,12,6
chr2	25359254	.	C	T	363.76	PASS	AC=1;AF=0.556;AN=2;DP=475;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant9-variant13-variant15-variant16-variant18-variant21-variant23-variant26-variant28-variant30-variant32-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:431,0,549:13,4,12,2
chr2	25359422	.	G	A	1476.52	PASS	AC=1;AF=0.591;AN=2;DP=3172;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant10-variant11-variant14-variant18-variant21-variant24-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,65:133:99:1614,0,1625:34,34,33,32
chr2	25360186	.	C	T	250.16	PASS	AC=1;AF=0.5;AN=2;DP=174;FractionInformativeReads=1;MQ=60;set=variant7-variant28-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:616,0,605:15,6,17,8
chr2	25368951	.	GTTT	G,GTT,GT,GTTTT	408.36	PASS	AC=0,1,0,0;AF=0.061,0.197,0.242,0.091;AN=2;DP=1490;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant37-variant38-filterInvariant39-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	0/2:27:99:9,8,5,5
chr2	25375105	.	T	C	337.44	PASS	AC=2;AF=0.764;AN=2;DP=540;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:609,45,0:0,0,5,10
chr2	25376681	.	G	A	1773.61	PASS	AC=1;AF=0.5;AN=2;DP=567;FractionInformativeReads=1;MQ=60;set=variant7-variant28-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,61:121:99:1474,0,1556:21,39,29,32
chr2	25377176	.	T	C	1988.41	PASS	AC=2;AF=0.708;AN=2;DP=7255;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:5631,527,0:0,0,80,96
chr2	25383887	.	G	A	1227.33	PASS	AC=2;AF=0.556;AN=2;DP=2009;MQ=60;set=variant-variant5-variant8-variant10-variant11-variant14-variant18-variant21-variant24-variant28-variant30-variant34-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3300,299,0:0,0,70,30
chr2	25387858	.	G	GACC	322.73	PASS	AC=2;AF=0.857;AN=2;DP=590;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:970,66,0:0,0,5,17
chr2	25456647	.	CA	C	273.12	PASS	AC=1;AF=0.629;AN=2;DP=1051;set=variant-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:242,0,327:11,5,10,2
chr2	25458379	.	G	A	35.5	PASS	AC=1;AF=0.636;AN=2;DP=611;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:455,0,307:8,3,10,6
chr2	25458546	.	C	T	617.15	PASS	AC=1;AF=0.636;AN=2;DP=3545;MQ=60;set=variant-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,44:104:99:1115,0,1557:32,28,25,19
chr2	25463483	.	G	A	232.04	PASS	AC=1;AF=0.618;AN=2;DP=1993;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:654,0,397:11,7,16,11
chr2	25466888	.	G	T	977.59	PASS	AC=1;AF=0.733;AN=2;DP=2331;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:339,0,482:7,12,7,9
chr2	25469913	.	C	T	691.27	PASS	AC=1;AF=0.733;AN=2;DP=2956;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,37:64:99:893,0,663:19,8,23,14
chr2	25472784	.	C	T	1222.53	PASS	AC=1;AF=0.733;AN=2;DP=1096;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,9:28:99:211,0,580:5,14,3,6
chr2	25497684	.	A	AC	524.34	PASS	AC=2;AF=0.691;AN=2;DP=1028;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:929,69,0:0,0,17,6
chr2	25498283	.	A	C	198.42	PASS	AC=1;AF=0.5;AN=2;DP=1216;set=variant-variant2-filterInvariant3-variant4-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-filterInvariant22-variant23-filterInvariant24-variant25-filterInvariant27-variant29-variant30-variant31-variant32-variant33-filterInvariant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,6:27:99:189,0,824:8,13,6,0
chr2	25498287	.	T	C	430	PASS	AC=1;AF=0.5;AN=2;DP=1384;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant15-variant16-variant17-filterInvariant18-filterInvariant19-variant20-filterInvariant22-variant23-filterInvariant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-filterInvariant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,6:34:99:143,0,1850:13,15,6,0
chr2	25498290	.	G	C	418.43	PASS	AC=1;AF=0.5;AN=2;DP=1455;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant15-variant16-variant17-filterInvariant19-variant20-filterInvariant22-variant23-variant24-filterInvariant25-variant27-variant29-filterInvariant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,6:39:99:143,0,1822:17,16,6,0
chr2	25498296	.	T	C	405.44	PASS	AC=1;AF=0.5;AN=2;DP=1396;set=variant-filterInvariant3-variant7-variant9-variant12-variant13-variant15-variant16-variant17-filterInvariant19-variant20-variant22-variant24-filterInvariant25-variant27-variant29-filterInvariant30-variant31-filterInvariant32-variant33-variant35-variant36-variant37-variant38-filterInvariant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,6:47:81:81,0,2206:23,18,6,0
chr2	25498298	.	A	C	55.18	PASS	AC=1;AF=0.5;AN=2;DP=1236;set=filterInvariant-filterInvariant3-variant7-variant9-filterInvariant11-variant12-variant13-variant15-variant16-filterInvariant17-filterInvariant19-variant20-variant22-variant24-variant27-variant29-variant31-variant35-variant36-variant37-variant38-filterInvariant39-variant40-filterInvariant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,5:47:81:81,0,2206:24,18,5,0
chr2	25602142	.	G	A	3121.95	PASS	AC=1;AF=0.773;AN=2;DP=2661;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,41:89:99:1080,0,1234:31,17,28,13
chr2	25656880	.	C	G	1835.45	PASS	AC=1;AF=0.875;AN=2;DP=2055;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:530,0,773:6,11,4,12
chr2	25656889	.	G	GT	316.08	PASS	AC=1;AF=0.526;AN=2;DP=691;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant14-variant15-variant18-variant21-variant23-variant29-variant30-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:497,0,694:5,10,3,11
chr2	25754235	.	T	C	573.32	PASS	AC=2;AF=0.588;AN=2;DP=616;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant10-variant13-variant14-variant15-variant19-variant29-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1163,99,0:0,0,23,10
chr2	25800079	.	A	G	34.71	PASS	AC=1;AF=0.667;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;set=variant19-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:77:79,0,77:2,0,1,2
chr2	25875401	.	T	TA,TAA	518.6	PASS	AC=0,1;AF=0.313,0.333;AN=2;DP=1072;set=variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant27-variant30-variant31-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:27:99:10,6,7,4
chr2	25961583	.	A	G	1590.69	PASS	AC=1;AF=0.5;AN=2;DP=4003;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:84,70:154:99:1881,0,2183:43,41,39,31
chr2	25973309	.	C	T	388.29	PASS	AC=1;AF=0.536;AN=2;DP=859;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,11:32:99:274,0,541:8,13,3,8
chr2	25990640	.	T	C	589.9	PASS	AC=1;AF=0.5;AN=2;DP=754;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant15-variant17-variant20-variant21-variant23-variant25-variant26-variant29-variant31-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:556,0,679:9,18,8,14
chr2	25994412	.	A	AG	1223.58	PASS	AC=1;AF=0.5;AN=2;DP=3868;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:73,55:128:99:1124,0,2052:39,34,31,24
chr2	26003068	.	C	T	281.63	PASS	AC=1;AF=0.568;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant19-variant21-variant24-variant25-variant31-variant33-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:69:69,0,160:4,2,2,2
chr2	26003230	.	A	G	234.06	PASS	AC=1;AF=0.5;AN=2;DP=522;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:209,0,188:1,5,3,6
chr2	26082057	.	T	C	459.21	PASS	AC=2;AF=0.878;AN=2;DP=389;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,2,2
chr2	26082212	.	T	C	408.18	PASS	AC=1;AF=0.5;AN=2;DP=509;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:386,0,172:5,4,9,6
chr2	26101403	.	A	C	326.24	PASS	AC=1;AF=0.5;AN=2;DP=598;MQ=60;set=variant2-variant4-variant5-variant7-variant9-variant10-variant11-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:95:95,0,359:2,9,1,3
chr2	26149502	.	A	G	304.59	PASS	AC=2;AF=0.78;AN=2;DP=758;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:337,30,0:0,0,6,4
chr2	26149968	.	C	T	2048.05	PASS	AC=2;AF=1;AN=2;DP=3844;FS=0;MQ=60;MQRankSum=1.643;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3829,268,0:0,0,46,42
chr2	26149988	.	G	C	668.06	PASS	AC=2;AF=0.768;AN=2;DP=3774;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3892,282,0:0,0,49,45
chr2	26150589	.	G	T	10344.9	PASS	AC=2;AF=0.872;AN=2;DP=13054;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,282:282:99:8469,844,0:0,0,159,123
chr2	26150773	.	T	G	9344.7	PASS	AC=2;AF=0.872;AN=2;DP=11087;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,246:246:99:7599,736,0:0,0,114,132
chr2	26151206	.	T	C	1357.46	PASS	AC=2;AF=0.953;AN=2;DP=2506;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1526,149,0:0,0,24,26
chr2	26151643	.	A	T	758.86	PASS	AC=2;AF=0.857;AN=2;DP=1317;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:1023,95,0:0,0,13,19
chr2	26151896	.	G	C	1254.8	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=2.488;FractionInformativeReads=0.991;MQ=60;MQRankSum=-1.282;QD=11.62;ReadPosRankSum=0.72;SOR=0.482;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,51:107:99:1283,0,1380:32,24,26,25
chr2	26161226	.	CA	CAA,C	214.03	PASS	AC=2,0;AF=0.526,0.026;AN=2;DP=982;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-filterInvariant35-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:21:42:1,0,16,4
chr2	26174882	.	T	C	853.94	PASS	AC=2;AF=0.529;AN=2;DP=1514;set=variant-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant18-variant25-variant26-variant27-variant32-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2308,231,0:0,0,31,46
chr2	26177198	.	A	G	1703.85	PASS	AC=2;AF=0.556;AN=2;DP=1269;MQ=60;set=variant-variant4-variant6-variant8-variant11-variant26-variant27-variant34-variant41	GT:AD:DP:GQ:PL:SB	1/1:4,147:151:99:4442,369,0:2,2,72,75
chr2	26179014	.	C	T	39.5	PASS	AC=2;AF=0.571;AN=2;DP=46;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant8-variant11-variant26-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:181,15,0:0,0,4,1
chr2	26203422	.	C	A	1735.85	PASS	AC=1;AF=0.5;AN=2;DP=168;FS=0;FractionInformativeReads=0.994;MQ=60;MQRankSum=-1.18;QD=10.33;ReadPosRankSum=-1.241;SOR=0.711;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:90,77:167:99:1764,0,2253:51,39,44,33
chr2	26203678	.	T	C	4287.94	PASS	AC=2;AF=1;AN=2;DP=8006;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5669,524,0:0,0,99,76
chr2	26204640	.	G	A	7604.18	PASS	AC=2;AF=0.712;AN=2;DP=7881;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:6035,583,0:0,0,95,100
chr2	26205081	.	A	T	3274.84	PASS	AC=2;AF=1;AN=2;DP=4704;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,91:92:99:2749,230,0:1,0,51,40
chr2	26257249	.	C	G	7173.16	PASS	AC=2;AF=1;AN=2;DP=5774;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:5142,349,0:0,0,43,73
chr2	26257250	.	G	C	7173.16	PASS	AC=2;AF=1;AN=2;DP=5696;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:5142,349,0:0,0,43,72
chr2	26321526	.	T	C	605.88	PASS	AC=2;AF=0.782;AN=2;DP=1841;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1376,132,0:0,0,25,19
chr2	26350136	.	G	T	1154.69	PASS	AC=2;AF=0.782;AN=2;DP=2903;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2351,234,0:0,0,27,51
chr2	26357748	.	G	T	825.3	PASS	AC=2;AF=0.789;AN=2;DP=2333;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1983,186,0:0,0,42,20
chr2	26358110	.	G	C	1906.01	PASS	AC=2;AF=0.797;AN=2;DP=5501;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4757,452,0:0,0,68,83
chr2	26359315	.	G	A	2717.79	PASS	AC=2;AF=0.795;AN=2;DP=6902;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5324,482,0:0,0,103,58
chr2	26399214	.	G	A	472.82	PASS	AC=2;AF=0.75;AN=2;DP=4584;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:3664,381,0:0,0,65,64
chr2	26399481	.	C	G	90.18	PASS	AC=2;AF=0.743;AN=2;DP=919;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:931,87,0:0,0,9,20
chr2	26403766	.	G	A	1274.93	PASS	AC=2;AF=0.833;AN=2;DP=1800;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1239,99,0:0,0,24,9
chr2	26404221	.	C	T	2318.02	PASS	AC=2;AF=0.833;AN=2;DP=2689;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2321,212,0:0,0,37,34
chr2	26404775	.	A	G	453.55	PASS	AC=2;AF=0.851;AN=2;DP=407;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:364,27,0:0,0,8,1
chr2	26405016	.	C	G	1834.35	PASS	AC=2;AF=0.833;AN=2;DP=3463;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2960,276,0:0,0,49,43
chr2	26405985	.	A	G	534.3	PASS	AC=2;AF=0.833;AN=2;DP=1252;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1267,111,0:0,0,12,25
chr2	26407937	.	A	G	538.51	PASS	AC=1;AF=0.563;AN=2;DP=228;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant9-variant13-variant31-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:349,0,403:11,10,9,7
chr2	26408064	.	T	C	983.58	PASS	AC=2;AF=0.955;AN=2;DP=1212;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:858,78,0:0,0,11,15
chr2	26411894	.	C	T	1800.17	PASS	AC=2;AF=0.821;AN=2;DP=3113;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2823,265,0:0,0,45,44
chr2	26412563	.	AAAC	A	583.7	PASS	AC=2;AF=0.833;AN=2;DP=707;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:405,27,0:0,0,2,7
chr2	26412638	.	G	T	196.77	PASS	AC=2;AF=0.857;AN=2;DP=277;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:184,15,0:0,0,1,4
chr2	26413917	.	C	T	782.79	PASS	AC=2;AF=0.833;AN=2;DP=1031;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:684,51,0:0,0,5,12
chr2	26415429	.	A	G	680.97	PASS	AC=2;AF=0.833;AN=2;DP=661;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:44:496,44,0:0,0,3,12
chr2	26416301	.	A	G	1197.5	PASS	AC=2;AF=0.833;AN=2;DP=1879;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1352,119,0:0,0,27,13
chr2	26417533	.	C	A	553.53	PASS	AC=2;AF=0.833;AN=2;DP=638;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:532,42,0:0,0,2,12
chr2	26420708	.	T	G	2286.71	PASS	AC=2;AF=0.833;AN=2;DP=3306;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2140,197,0:0,0,26,40
chr2	26420809	.	G	C	455.3	PASS	AC=2;AF=0.842;AN=2;DP=688;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:827,69,0:0,0,4,19
chr2	26454996	.	A	G	911.8	PASS	AC=2;AF=0.829;AN=2;DP=774;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:673,60,0:0,0,14,6
chr2	26467666	.	G	A	2035.46	PASS	AC=2;AF=0.829;AN=2;DP=2303;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1803,148,0:0,0,26,24
chr2	26476977	.	A	G	2102.4	PASS	AC=2;AF=0.977;AN=2;DP=3188;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2435,194,0:0,0,56,9
chr2	26477125	.	G	GACT	17279.8	PASS	AC=2;AF=0.977;AN=2;DP=15219;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,353:353:99:15863,1062,0:0,0,164,189
chr2	26484080	.	A	AC,ACC	403.06	PASS	AC=1,0;AF=0.191,0.559;AN=2;DP=771;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-filterInvariant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:19:8:0,3,3,13
chr2	26486166	.	TA	T	33.33	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=0;MQ=60;set=variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:36:76,0,36:2,1,3,1
chr2	26500101	.	CTTT	CTT,C,CT,CTTTT,CTTTTT	46.22	PASS	AC=0,0,1,0,0;AF=0.204,0.056,0.259,0.056,0.019;AN=2;DP=1094;MQ=60;set=filterInvariant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-filterInvariant13-variant15-variant17-variant19-variant20-variant21-variant22-variant25-filterInvariant26-variant28-variant33-variant34-variant35-variant37-variant38-variant41-filterInvariant42-filterInvariant44	GT:DP:GQ:SB	0/3:16:99:3,8,2,3
chr2	26507331	.	CTT	CT,C	36.47	PASS	AC=1,0;AF=0.429,0.071;AN=2;DP=138;MQ=60;set=filterInvariant7-variant9-variant12-variant27-filterInvariant32-variant41-variant44	GT:DP:GQ:SB	0/1:10:78:0,5,1,4
chr2	26512957	.	G	C	11413	PASS	AC=2;AF=0.977;AN=2;DP=11530;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,232:232:99:7426,695,0:0,0,119,113
chr2	26532491	.	G	T	1336.53	PASS	AC=1;AF=0.732;AN=2;DP=4487;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,48:104:99:1158,0,1481:27,29,22,26
chr2	26532735	.	G	A	882.19	PASS	AC=1;AF=0.713;AN=2;DP=2982;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,28:73:99:747,0,1211:26,19,17,11
chr2	26533023	.	C	T	844.36	PASS	AC=1;AF=0.713;AN=2;DP=4320;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,46:103:99:1188,0,1497:25,32,17,29
chr2	26534801	.	G	A	1173.68	PASS	AC=1;AF=0.725;AN=2;DP=3146;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,45:91:99:1268,0,1241:19,27,20,25
chr2	26536299	.	C	G	1027.28	PASS	AC=1;AF=0.574;AN=2;DP=3436;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant9-variant11-variant13-variant14-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:79,69:148:99:1631,0,1762:42,37,36,33
chr2	26536555	.	T	C	584.33	PASS	AC=1;AF=0.744;AN=2;DP=1283;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:216,0,467:8,5,4,4
chr2	26536694	.	C	T	487.73	PASS	AC=1;AF=0.732;AN=2;DP=4005;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,24:68:99:580,0,1187:24,20,14,10
chr2	26537499	.	A	C	968.27	PASS	AC=1;AF=0.966;AN=2;DP=4290;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,50:91:99:1320,0,1029:15,26,19,31
chr2	26541019	.	C	G,T	649.09	PASS	AC=0,1;AF=0.375,0.125;AN=2;DP=206;FractionInformativeReads=1;MQ=60;set=variant10-variant37-variant38-variant41	GT:DP:GQ:SB	0/2:53:99:12,21,10,10
chr2	26541158	.	G	A	145.31	PASS	AC=2;AF=0.965;AN=2;DP=272;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:274,21,0:0,0,1,6
chr2	26542143	.	A	G	184.68	PASS	AC=2;AF=0.988;AN=2;DP=281;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.067;ReadPosRankSum=0.572;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:264,18,0:0,0,0,6
chr2	26606347	.	T	A	524.32	PASS	AC=1;AF=0.734;AN=2;DP=872;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:193,0,149:3,4,4,4
chr2	26607992	.	T	C	2001.51	PASS	AC=2;AF=0.966;AN=2;DP=2000;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1277,116,0:0,0,9,30
chr2	26612465	.	G	A	5728.83	PASS	AC=1;AF=0.734;AN=2;DP=12538;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:175,195:370:99:4809,0,4494:77,98,89,106
chr2	26613056	.	C	T	18703.2	PASS	AC=2;AF=1;AN=2;DP=21909;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,487:487:99:15294,1460,0:0,0,238,249
chr2	26613943	.	ATT	A	9392.42	PASS	AC=2;AF=1;AN=2;DP=8586;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:7269,488,0:0,0,93,69
chr2	26613974	.	C	T	7776.14	PASS	AC=2;AF=0.966;AN=2;DP=9747;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5258,505,0:0,0,94,75
chr2	26614583	.	T	TA	8545.9	PASS	AC=2;AF=0.966;AN=2;DP=11077;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,239:239:99:7413,721,0:0,0,145,94
chr2	26615902	.	G	A	3457.08	PASS	AC=1;AF=0.734;AN=2;DP=7668;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:138,115:253:99:2879,0,3559:75,63,64,51
chr2	26616356	.	A	G	551.2	PASS	AC=1;AF=0.734;AN=2;DP=1082;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:342,0,446:6,10,5,7
chr2	26616401	.	A	T	1012.15	PASS	AC=2;AF=0.966;AN=2;DP=1443;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:824,66,0:0,0,12,10
chr2	26617209	.	A	G	194.2	PASS	AC=1;AF=0.759;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant23-variant24-variant26-variant27-variant31-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:99:234,0,107:3,0,4,3
chr2	26618389	.	C	T	1116.68	PASS	AC=1;AF=0.5;AN=2;DP=574;MQ=60;set=variant7-variant10-variant26-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,38:91:99:1159,0,1401:30,23,22,16
chr2	26618543	.	G	A	4345.87	PASS	AC=1;AF=0.734;AN=2;DP=8904;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,126:257:99:2864,0,3083:63,68,62,64
chr2	26625042	.	C	A	173.4	PASS	AC=1;AF=0.721;AN=2;DP=735;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,3:15:77:77,0,275:5,7,0,3
chr2	26647277	.	T	G	655.8	PASS	AC=1;AF=0.93;AN=2;DP=2413;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,34:72:99:868,0,1012:16,22,13,21
chr2	26652671	.	A	G	907.03	PASS	AC=2;AF=0.965;AN=2;DP=1104;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:641,57,0:0,0,6,13
chr2	26653457	.	G	A	6755.21	PASS	AC=1;AF=0.757;AN=2;DP=6446;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,89:180:99:2209,0,2482:50,41,56,33
chr2	26653826	.	C	CTTT,CT,CTT	148.06	PASS	AC=0,0,1;AF=0.071,0.31,0.167;AN=2;DP=442;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant13-variant16-variant17-variant21-variant22-variant27-variant31-variant32-variant34-filterInvariant37-variant38-variant40-variant41-filterInvariant43	GT:DP:GQ:SB	0/3:9:48:0,3,0,6
chr2	26663187	.	TTG	TTGTG,TTGTGTG,T,TTGTGTGTG,TTGTGTGTGTG	159.32	PASS	AC=1,0,1,0,0;AF=0.317,0.463,0.073,0.012,0.012;AN=2;DP=408;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/1:8:98:0,0,8,0
chr2	26663215	.	A	G	51.02	PASS	AC=1;AF=0.72;AN=2;DP=374;set=variant-variant2-variant4-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant30-variant31-variant33-variant34-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:163,0,153:3,1,5,0
chr2	26667512	.	C	T	812.84	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.83;QD=16.93;ReadPosRankSum=-1.432;SOR=0.782;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,28:48:99:841,0,564:14,6,20,8
chr2	26667615	.	T	C	4168.54	PASS	AC=2;AF=1;AN=2;DP=6645;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,172:172:99:5390,515,0:0,0,100,72
chr2	26671544	.	A	G	1679.37	PASS	AC=1;AF=0.893;AN=2;DP=4339;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,62:94:99:1498,0,678:16,16,36,26
chr2	26676322	.	A	G	852.9	PASS	AC=2;AF=1;AN=2;DP=2128;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1426,132,0:0,0,17,27
chr2	26677303	.	G	T	1109.41	PASS	AC=2;AF=0.955;AN=2;DP=1518;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:950,93,0:0,0,19,12
chr2	26677446	.	G	A	247.33	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.834;QD=4.42;ReadPosRankSum=0.99;SOR=0.786;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,13:56:99:276,0,1040:21,22,6,7
chr2	26677729	.	G	A	515.48	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=6.301;FractionInformativeReads=1;MQ=60;MQRankSum=0.697;QD=17.78;ReadPosRankSum=-0.427;SOR=0.126;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:544,0,395:2,9,8,10
chr2	26677810	.	A	G	171.09	PASS	AC=1;AF=0.869;AN=2;DP=1383;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:536,0,684:13,9,15,0
chr2	26678040	.	G	T	1171.68	PASS	AC=1;AF=0.571;AN=2;DP=533;FractionInformativeReads=1;MQ=60;set=variant11-variant18-variant25-variant27-variant29-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,30:68:99:758,0,1161:12,26,12,18
chr2	26679993	.	T	C	402.3	PASS	AC=1;AF=0.563;AN=2;DP=140;FractionInformativeReads=1;MQ=60;set=variant9-variant10-variant11-variant18-variant25-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,6:24:99:155,0,523:12,6,4,2
chr2	26680392	.	T	A	501.73	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=2.117;FractionInformativeReads=1;MQ=60;MQRankSum=-1.458;QD=7.38;ReadPosRankSum=-1.962;SOR=0.424;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,26:68:99:530,0,1004:16,26,12,14
chr2	26680486	.	C	A	761.83	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=1.178;FractionInformativeReads=1;MQ=60;MQRankSum=-1.092;QD=16.56;ReadPosRankSum=-1.456;SOR=0.471;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,29:46:99:790,0,430:7,10,14,15
chr2	26687761	.	G	A	3760.25	PASS	AC=1;AF=0.625;AN=2;DP=541;MQ=60;set=variant10-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,74:140:99:1899,0,1637:39,27,43,31
chr2	26689912	.	TG	T	1582.23	PASS	AC=1;AF=0.583;AN=2;DP=268;MQ=60;set=variant10-variant14-variant18-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:800,0,887:15,2,16,5
chr2	26689914	.	G	A	1591.26	PASS	AC=1;AF=0.625;AN=2;DP=186;MQ=60;set=variant10-variant18-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:800,0,887:15,2,16,5
chr2	26699126	.	C	G	327.77	PASS	AC=1;AF=0.629;AN=2;DP=2619;MQ=60;set=variant-variant4-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,35:78:99:1010,0,980:17,26,11,24
chr2	26700819	.	TGG	T	1666.74	PASS	AC=1;AF=0.629;AN=2;DP=2965;set=variant-variant4-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,46:105:99:1712,0,2206:27,32,21,25
chr2	26700908	.	C	G	825.24	PASS	AC=1;AF=0.629;AN=2;DP=2536;MQ=60;set=variant-variant4-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,32:67:99:820,0,873:12,23,13,19
chr2	26702082	.	G	A	498.11	PASS	AC=1;AF=0.5;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant18-variant25-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:680,0,811:20,8,16,12
chr2	26707593	.	T	A	604.28	PASS	AC=1;AF=0.5;AN=2;DP=239;FractionInformativeReads=1;MQ=60;set=variant7-variant25-variant26-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:376,0,924:5,20,1,12
chr2	26712561	.	C	T	2429.25	PASS	AC=1;AF=0.5;AN=2;DP=1125;MQ=60;set=variant7-variant10-variant25-variant26-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,81:169:99:1777,0,2104:45,43,41,40
chr2	26717531	.	G	GT	86.78	PASS	AC=1;AF=0.5;AN=2;DP=73;MQ=60;set=variant7-variant8-variant25-variant26-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:42:172,0,42:1,1,3,2
chr2	26717641	.	A	G	238.34	PASS	AC=1;AF=0.641;AN=2;DP=1058;MQ=60;set=variant-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:547,0,446:11,5,11,7
chr2	26724725	.	T	G	2376.89	PASS	AC=1;AF=0.656;AN=2;DP=3019;set=variant-variant4-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,46:100:99:1155,0,1319:19,35,18,28
chr2	26733544	.	T	C	3745.28	PASS	AC=1;AF=0.5;AN=2;DP=183;FS=1.159;FractionInformativeReads=0.995;MQ=60;MQRankSum=1.831;QD=20.47;ReadPosRankSum=0.575;SOR=0.591;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:87,95:182:99:3774,0,5137:50,37,52,43
chr2	26733545	.	T	C	3745.28	PASS	AC=1;AF=0.5;AN=2;DP=185;FS=1.154;FractionInformativeReads=0.995;MQ=60;MQRankSum=-0.091;QD=20.24;ReadPosRankSum=-2.612;SOR=0.587;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:87,97:184:99:3774,0,5137:50,37,53,44
chr2	26733713	.	G	A	807.29	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=3.922;FractionInformativeReads=1;MQ=60;MQRankSum=-1.385;QD=11.06;ReadPosRankSum=1.968;SOR=1.248;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,30:73:99:836,0,1367:11,32,5,25
chr2	26739247	.	T	A	3265.28	PASS	AC=2;AF=0.769;AN=2;DP=3658;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2332,227,0:0,0,45,31
chr2	26741719	.	G	A	931.99	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=1.362;FractionInformativeReads=1;MQ=60;MQRankSum=-0.941;QD=19.02;ReadPosRankSum=-0.033;SOR=0.483;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,35:49:99:960,0,351:11,3,25,10
chr2	26741808	.	G	T	1322.48	PASS	AC=1;AF=0.5;AN=2;DP=264;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,86:129:99:2268,0,966:24,19,51,35
chr2	26741961	.	G	A	1049.87	PASS	AC=1;AF=0.621;AN=2;DP=4397;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,53:146:99:1093,0,2432:37,56,25,28
chr2	26750557	.	T	C	978.83	PASS	AC=1;AF=0.977;AN=2;DP=1899;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:714,0,585:15,7,17,6
chr2	26750645	.	G	A	2927.54	PASS	AC=1;AF=0.802;AN=2;DP=4503;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,45:91:99:1143,0,1157:28,18,27,18
chr2	26785278	.	G	C	320.21	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;set=variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,12:16:89:348,0,89:3,1,9,3
chr2	26799091	.	C	A	421.62	PASS	AC=2;AF=0.667;AN=2;DP=145;FractionInformativeReads=1;MQ=60;set=variant23-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1645,147,0:0,0,17,32
chr2	26800422	.	G	A	1170.02	PASS	AC=2;AF=0.735;AN=2;DP=6058;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5067,506,0:0,0,80,89
chr2	26804122	.	T	G	582.79	PASS	AC=2;AF=0.65;AN=2;DP=2165;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2713,273,0:0,0,50,41
chr2	26804143	.	T	C	717.81	PASS	AC=2;AF=0.656;AN=2;DP=2674;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2919,279,0:0,0,48,45
chr2	26804218	.	G	A	1710.56	PASS	AC=2;AF=0.977;AN=2;DP=4860;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2998,287,0:0,0,42,54
chr2	26804247	.	T	C	502.05	PASS	AC=2;AF=0.607;AN=2;DP=2755;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant30-variant32-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2615,249,0:0,0,38,45
chr2	26804365	.	T	G	226.03	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.188;QD=8.07;ReadPosRankSum=1.035;SOR=0.498;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:254,0,517:4,13,3,8
chr2	26806803	.	T	C	768.33	PASS	AC=1;AF=0.5;AN=2;DP=124;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:478,0,724:11,14,11,12
chr2	26817798	.	A	G	154.93	PASS	AC=1;AF=0.5;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:212,0,312:8,2,6,3
chr2	26818006	.	T	C	1624.67	PASS	AC=1;AF=0.81;AN=2;DP=7125;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:126,74:200:99:1637,0,3073:65,61,38,36
chr2	26846609	.	G	C	229.58	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=1.837;FractionInformativeReads=1;MQ=60;MQRankSum=-1.068;QD=10.44;ReadPosRankSum=-0.601;SOR=0.34;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:258,0,408:3,10,3,6
chr2	26915624	.	G	T	435.19	PASS	AC=1;AF=0.75;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,157:4,1,2,0
chr2	26951449	.	G	A	1913.24	PASS	AC=1;AF=0.989;AN=2;DP=4135;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:52,57:109:99:1419,0,1380:22,30,29,28
chr2	26952998	.	T	C	857	PASS	AC=1;AF=0.568;AN=2;DP=1176;MQ=60;set=variant3-variant5-variant7-variant8-variant12-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant30-variant31-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,38:62:99:931,0,662:15,9,20,18
chr2	26953354	.	G	T	2696.29	PASS	AC=1;AF=0.686;AN=2;DP=4104;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,74:133:99:1808,0,1491:30,29,33,41
chr2	26953540	.	A	G	3818.36	PASS	AC=1;AF=0.686;AN=2;DP=4926;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,55:153:99:1381,0,2656:48,50,27,28
chr2	26953582	.	T	G	4805.9	PASS	AC=1;AF=0.686;AN=2;DP=4703;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,55:143:99:1978,0,3403:41,47,27,28
chr2	26953591	.	G	A	4582.02	PASS	AC=1;AF=0.989;AN=2;DP=5924;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:81,52:133:99:1931,0,3220:37,44,25,27
chr2	26953671	.	G	A	2863.68	PASS	AC=1;AF=0.989;AN=2;DP=4945;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,50:106:99:1281,0,1516:28,28,28,22
chr2	26953747	.	A	G	2923.86	PASS	AC=1;AF=0.989;AN=2;DP=4735;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,64:120:99:1611,0,1300:26,30,34,30
chr2	26953850	.	C	T	2968.94	PASS	AC=1;AF=0.686;AN=2;DP=3393;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,64:112:99:1665,0,1311:24,24,30,34
chr2	26954344	.	G	A	178.65	PASS	AC=1;AF=0.985;AN=2;DP=178;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:34:79,0,34:1,1,2,1
chr2	26954991	.	G	A	1157.84	PASS	AC=1;AF=0.568;AN=2;DP=1692;MQ=60;set=variant3-variant5-variant7-variant8-variant12-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant30-variant31-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,35:67:99:841,0,681:17,15,17,18
chr2	26956187	.	G	A	1075.07	PASS	AC=1;AF=0.989;AN=2;DP=1730;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:485,0,467:8,11,10,8
chr2	27000611	.	A	AGT,AGTGT	301.61	PASS	AC=0,1;AF=0.091,0.636;AN=2;DP=133;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant37-variant38-variant39-variant41	GT:DP:GQ:SB	0/2:3:44:1,0,2,0
chr2	27003021	.	T	C	246.86	PASS	AC=1;AF=0.604;AN=2;DP=523;MQ=60;set=variant3-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:399,0,163:4,3,7,9
chr2	27014980	.	T	C	1616.44	PASS	AC=1;AF=0.604;AN=2;DP=2979;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,56:109:99:1460,0,1425:31,22,32,24
chr2	27015118	.	G	A	994.06	PASS	AC=1;AF=0.604;AN=2;DP=1430;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,33:78:99:833,0,1111:16,29,13,20
chr2	27015141	.	G	GC	626.89	PASS	AC=1;AF=0.604;AN=2;DP=972;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:870,0,891:9,21,10,20
chr2	27015301	.	C	T	298.04	PASS	AC=1;AF=0.5;AN=2;DP=104;FractionInformativeReads=1;MQ=60;set=variant5-variant18-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:346,0,555:12,7,8,5
chr2	27015903	.	T	C	843.77	PASS	AC=1;AF=0.604;AN=2;DP=1345;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,18:45:99:596,0,886:17,10,16,2
chr2	27015969	.	G	A	1186.69	PASS	AC=1;AF=0.604;AN=2;DP=2738;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,56:107:99:1352,0,1252:31,20,35,21
chr2	27016259	.	A	G	588.75	PASS	AC=1;AF=0.604;AN=2;DP=974;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:602,0,814:15,19,10,14
chr2	27016302	.	G	GT	617.98	PASS	AC=1;AF=0.604;AN=2;DP=696;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:462,0,472:5,11,7,9
chr2	27016351	.	G	A	183.09	PASS	AC=1;AF=0.604;AN=2;DP=377;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant15-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:99:310,0,136:1,4,5,8
chr2	27016988	.	C	T	4578.22	PASS	AC=2;AF=0.943;AN=2;DP=13801;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,334:334:99:10687,999,0:0,0,143,191
chr2	27017542	.	A	AT	43.31	PASS	AC=2;AF=0.864;AN=2;DP=157;set=variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant31-variant33-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:114,12,0:0,0,0,4
chr2	27157400	.	A	G	343.27	PASS	AC=2;AF=1;AN=2;DP=475;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:514,42,0:0,0,11,3
chr2	27163044	.	T	C	4288.97	PASS	AC=2;AF=0.7;AN=2;DP=5770;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4942,459,0:0,0,64,89
chr2	27163284	.	G	A	275.29	PASS	AC=2;AF=0.988;AN=2;DP=347;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.421;ReadPosRankSum=-2.017;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:250,18,0:0,0,0,6
chr2	27164806	.	G	A	4368.14	PASS	AC=2;AF=0.7;AN=2;DP=5400;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3810,370,0:0,0,71,53
chr2	27167617	.	G	A	981.27	PASS	AC=1;AF=0.5;AN=2;DP=330;FractionInformativeReads=1;MQ=60;set=variant14-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,41:69:99:1165,0,661:12,16,17,24
chr2	27169637	.	TC	T	1334.73	PASS	AC=2;AF=0.714;AN=2;DP=1828;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2062,154,0:0,0,35,16
chr2	27169842	.	C	A	4434.41	PASS	AC=2;AF=0.714;AN=2;DP=8363;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,216:216:99:6454,642,0:0,0,113,103
chr2	27170470	.	C	CG	2879.49	PASS	AC=2;AF=0.714;AN=2;DP=3080;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,92:93:99:2826,248,0:0,1,43,49
chr2	27170941	.	CCACACA	CCA,CCACA,CCACACACA,C,CCACACACACACACACACACACACACACACACACACACACGCACACA	567.18	PASS	AC=0,2,0,0,0;AF=0.143,0.369,0.238,0.036,0.012;AN=2;DP=1248;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	2/2:19:56:0,0,10,9
chr2	27170982	.	C	T	1062.45	PASS	AC=2;AF=0.714;AN=2;DP=1366;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:99:1361,106,0:0,0,16,16
chr2	27173249	.	G	A	869.65	PASS	AC=2;AF=0.714;AN=2;DP=1266;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:1023,98,0:0,0,11,22
chr2	27237614	.	A	G	635.51	PASS	AC=2;AF=0.721;AN=2;DP=887;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:59:575,59,0:0,0,12,8
chr2	27246285	.	C	T	4255.29	PASS	AC=2;AF=0.932;AN=2;DP=9184;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:5846,564,0:0,0,99,89
chr2	27249245	.	A	G	3903.66	PASS	AC=2;AF=0.721;AN=2;DP=5501;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,177:177:99:5227,530,0:0,0,81,96
chr2	27259794	.	G	A	2591.51	PASS	AC=2;AF=0.706;AN=2;DP=2850;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2585,231,0:0,0,39,38
chr2	27261329	.	A	G	1195.68	PASS	AC=2;AF=1;AN=2;DP=1960;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1411,123,0:0,0,27,14
chr2	27262763	.	GGGA	G	1463.65	PASS	AC=2;AF=1;AN=2;DP=2996;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2480,169,0:0,0,20,36
chr2	27263122	.	T	C	3270.56	PASS	AC=2;AF=0.714;AN=2;DP=6623;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,178:179:99:5675,526,0:0,1,96,82
chr2	27276202	.	G	A	2104.54	PASS	AC=2;AF=0.714;AN=2;DP=2297;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2212,200,0:0,0,35,32
chr2	27279416	.	A	G	3956.63	PASS	AC=2;AF=1;AN=2;DP=3643;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2129,206,0:0,0,43,26
chr2	27280092	.	T	A	1853.95	PASS	AC=2;AF=0.778;AN=2;DP=1729;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1767,159,0:0,0,38,15
chr2	27280127	.	G	A	2286.3	PASS	AC=2;AF=0.778;AN=2;DP=2634;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2181,212,0:0,0,40,31
chr2	27280460	.	A	G	654.9	PASS	AC=2;AF=0.714;AN=2;DP=852;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:675,54,0:0,0,5,13
chr2	27290525	.	A	G	2475.31	PASS	AC=2;AF=0.778;AN=2;DP=4680;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3531,338,0:0,0,68,45
chr2	27292651	.	T	C	3108.29	PASS	AC=2;AF=0.714;AN=2;DP=3835;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3156,303,0:0,0,37,64
chr2	27293150	.	G	T	5936.56	PASS	AC=2;AF=0.714;AN=2;DP=6042;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,171:171:99:5094,513,0:0,0,80,91
chr2	27302165	.	T	C	1969.14	PASS	AC=2;AF=0.714;AN=2;DP=2260;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1974,171,0:0,0,13,44
chr2	27303755	.	A	G	2329.22	PASS	AC=2;AF=1;AN=2;DP=4917;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3348,317,0:0,0,36,70
chr2	27307769	.	G	C	4260.56	PASS	AC=2;AF=0.722;AN=2;DP=5724;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:4617,482,0:0,0,84,77
chr2	27309659	.	A	C	1816.24	PASS	AC=2;AF=0.714;AN=2;DP=2157;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1543,159,0:0,0,31,22
chr2	27319826	.	A	G	3067.75	PASS	AC=2;AF=1;AN=2;DP=4598;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2433,241,0:0,0,37,44
chr2	27321887	.	A	G	882.5	PASS	AC=2;AF=1;AN=2;DP=1505;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1156,93,0:0,0,21,10
chr2	27323372	.	T	C	1928.09	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.319;QD=14.28;ReadPosRankSum=1.138;SOR=0.647;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,70:135:99:1956,0,1756:37,28,39,31
chr2	27323468	.	A	C	9916.31	PASS	AC=2;AF=1;AN=2;DP=11993;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,231:232:99:7100,683,0:0,1,128,103
chr2	27323936	.	G	GC	2284.68	PASS	AC=2;AF=0.735;AN=2;DP=2689;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2076,186,0:0,0,31,31
chr2	27324036	.	G	A	2297.4	PASS	AC=2;AF=0.734;AN=2;DP=2323;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1983,177,0:0,0,31,28
chr2	27324724	.	G	C	2515.95	PASS	AC=2;AF=0.735;AN=2;DP=4327;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3945,351,0:0,0,58,59
chr2	27324751	.	G	T	2359.49	PASS	AC=2;AF=0.735;AN=2;DP=4827;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,130:131:99:4285,382,0:0,1,67,63
chr2	27327543	.	G	T	1076.09	PASS	AC=1;AF=0.5;AN=2;DP=100;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.949;QD=10.76;ReadPosRankSum=-2.099;SOR=0.732;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,45:100:99:1104,0,1472:25,30,20,25
chr2	27351279	.	G	A	452.07	PASS	AC=2;AF=0.727;AN=2;DP=1092;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1435,137,0:0,0,34,12
chr2	27351948	.	T	G	1427.29	PASS	AC=2;AF=1;AN=2;DP=4528;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2815,272,0:0,0,41,50
chr2	27353339	.	C	T	2790.45	PASS	AC=1;AF=0.5;AN=2;DP=243;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.578;QD=11.48;ReadPosRankSum=0.387;SOR=0.722;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:132,111:243:99:2819,0,3144:64,68,53,58
chr2	27354036	.	T	C	230.98	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=1.342;FractionInformativeReads=1;MQ=60;MQRankSum=0.708;QD=6.08;ReadPosRankSum=0.831;SOR=0.666;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,13:38:99:259,0,680:14,11,6,7
chr2	27354173	.	C	A	1732.38	PASS	AC=2;AF=1;AN=2;DP=3481;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,64:66:99:2098,177,0:2,0,42,22
chr2	27355454	.	A	C	928.26	PASS	AC=2;AF=1;AN=2;DP=1581;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2041,168,0:0,0,36,20
chr2	27359887	.	C	T	1455.84	PASS	AC=1;AF=0.692;AN=2;DP=1335;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant16-variant21-variant22-variant23-variant25-variant27-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,18:47:99:389,0,894:16,13,9,9
chr2	27361049	.	G	C	781.7	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=3.243;FractionInformativeReads=1;MQ=60;MQRankSum=-1.806;QD=10.56;ReadPosRankSum=-0.387;SOR=1.204;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,32:74:99:810,0,1123:19,23,11,21
chr2	27361418	.	G	T	968.26	PASS	AC=1;AF=0.5;AN=2;DP=457;MQ=60;set=variant14-variant20-variant25-variant29-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,31:56:99:859,0,692:10,15,14,17
chr2	27423913	.	G	A	778.69	PASS	AC=1;AF=0.5;AN=2;DP=433;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,37:74:99:888,0,801:17,20,19,18
chr2	27426514	.	G	C	955.34	PASS	AC=1;AF=0.977;AN=2;DP=2867;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:52,40:92:99:912,0,1346:30,22,23,17
chr2	27428147	.	A	G	2320.48	PASS	AC=2;AF=1;AN=2;DP=2602;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,41:42:87:1433,87,0:1,0,34,7
chr2	27428173	.	C	T	1426.33	PASS	AC=1;AF=0.5;AN=2;DP=418;FractionInformativeReads=1;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,38:66:99:1083,0,746:20,8,29,9
chr2	27428295	.	A	G	5604.43	PASS	AC=2;AF=1;AN=2;DP=10335;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:5929,582,0:0,0,105,89
chr2	27430237	.	T	C	3578.83	PASS	AC=1;AF=0.5;AN=2;DP=1417;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:165,144:309:99:3404,0,3754:88,77,75,69
chr2	27434820	.	G	A	196.77	PASS	AC=1;AF=0.625;AN=2;DP=36;FractionInformativeReads=1;MQ=60;set=variant14-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:99:99,0,519:4,5,1,2
chr2	27434821	.	G	A	196.77	PASS	AC=1;AF=0.625;AN=2;DP=35;FractionInformativeReads=1;MQ=60;set=variant14-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:99:99,0,519:4,5,1,2
chr2	27435165	.	G	A	2305.6	PASS	AC=1;AF=0.5;AN=2;DP=324;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,79:149:99:2000,0,1798:41,29,42,37
chr2	27435250	.	A	G	5495.57	PASS	AC=1;AF=0.977;AN=2;DP=9111;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:124,109:233:99:2796,0,2857:71,53,61,48
chr2	27439354	.	G	A	719.44	PASS	AC=1;AF=0.5;AN=2;DP=109;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,30:48:99:907,0,539:16,2,22,8
chr2	27439518	.	A	G	1391.66	PASS	AC=1;AF=0.5;AN=2;DP=590;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:68,54:122:99:1404,0,1995:32,36,22,32
chr2	27439751	.	G	T	1979.7	PASS	AC=1;AF=0.5;AN=2;DP=756;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,58:138:99:1341,0,2254:31,49,25,33
chr2	27439884	.	T	C	1072.05	PASS	AC=1;AF=0.5;AN=2;DP=375;FractionInformativeReads=1;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,36:76:99:1018,0,1039:16,24,16,20
chr2	27440722	.	C	T	1465.48	PASS	AC=1;AF=0.5;AN=2;DP=393;FractionInformativeReads=1;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,38:82:99:1133,0,1333:17,27,20,18
chr2	27440785	.	C	T	2007.45	PASS	AC=2;AF=1;AN=2;DP=5736;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3823,351,0:0,0,63,54
chr2	27441018	.	C	G	66.47	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:369,0,475:1,12,0,10
chr2	27444024	.	G	A	1132.24	PASS	AC=1;AF=0.5;AN=2;DP=386;FractionInformativeReads=1;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,32:67:99:766,0,894:23,12,21,11
chr2	27445518	.	A	G	856.74	PASS	AC=1;AF=0.5;AN=2;DP=386;FractionInformativeReads=1;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,42:77:99:1251,0,1026:10,25,15,27
chr2	27446699	.	G	A	1700.47	PASS	AC=1;AF=0.5;AN=2;DP=230;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,50:110:99:1253,0,1638:32,28,22,28
chr2	27447161	.	C	A	1087.13	PASS	AC=1;AF=0.5;AN=2;DP=186;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,45:100:99:1155,0,1381:28,27,22,23
chr2	27448171	.	CT	CTTT,CTT,C,CTTTTT	33.67	PASS	AC=0,0,0,2;AF=0.1,0.35,0.1,0.1;AN=2;DP=177;set=variant8-variant11-filterInvariant12-variant15-variant26-variant28-variant33-filterInvariant34-variant39-variant41	GT:DP:GQ:SB	4/4:7:21:0,0,3,4
chr2	27448417	.	A	AC,ACCC	115.51	PASS	AC=1,0;AF=0.167,0.417;AN=2;DP=48;set=variant10-variant23-variant27-variant28-variant38-variant41	GT:DP:GQ:SB	0/1:6:43:2,0,1,3
chr2	27448513	.	A	T	444.28	PASS	AC=1;AF=0.5;AN=2;DP=177;FractionInformativeReads=1;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:545,0,468:13,4,13,9
chr2	27449293	.	C	G	1060.24	PASS	AC=2;AF=0.64;AN=2;DP=2073;MQ=60;set=variant2-variant4-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant26-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2745,242,0:0,0,37,44
chr2	27454638	.	G	C	974.98	PASS	AC=1;AF=0.5;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,43:71:99:1182,0,838:19,9,23,20
chr2	27455281	.	C	T	1297.04	PASS	AC=1;AF=0.5;AN=2;DP=431;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,44:88:99:1164,0,1209:25,19,27,17
chr2	27458606	.	A	G	652.26	PASS	AC=1;AF=0.5;AN=2;DP=205;FractionInformativeReads=1;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:403,0,424:4,12,1,11
chr2	27459364	.	T	C	1263.76	PASS	AC=1;AF=0.5;AN=2;DP=230;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,59:122:99:1459,0,1564:42,21,28,31
chr2	27460787	.	G	C	1269.08	PASS	AC=1;AF=0.5;AN=2;DP=516;FractionInformativeReads=1;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,56:119:99:1667,0,1784:36,27,25,31
chr2	27460968	.	A	G	1638.29	PASS	AC=2;AF=0.64;AN=2;DP=4069;MQ=60;set=variant2-variant4-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant26-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,171:171:99:5275,511,0:0,0,83,88
chr2	27462405	.	T	A	747.31	PASS	AC=2;AF=0.64;AN=2;DP=2323;MQ=60;set=variant2-variant4-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant26-variant27-variant28-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2820,283,0:0,0,51,44
chr2	27462651	.	T	C	2371.2	PASS	AC=1;AF=0.5;AN=2;DP=1288;MQ=60;set=variant8-variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:91,124:215:99:3039,0,2118:43,48,61,63
chr2	27463323	.	T	C	3966.7	PASS	AC=1;AF=0.5;AN=2;DP=598;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:155,150:305:99:4029,0,4027:76,79,66,84
chr2	27463351	.	C	T	3121.6	PASS	AC=1;AF=0.5;AN=2;DP=1523;MQ=60;set=variant14-variant20-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:162,165:327:99:4279,0,4396:73,89,74,91
chr2	27464475	.	C	T	390.78	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.306;QD=18.61;ReadPosRankSum=-0.187;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:419,0,252:4,3,9,5
chr2	27464478	.	C	T	276.92	PASS	AC=1;AF=0.5;AN=2;DP=64;FractionInformativeReads=1;MQ=60;set=variant14-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:197,0,556:9,5,4,3
chr2	27465881	.	G	A,T	1137.52	PASS	AC=0,1;AF=0.143,0.357;AN=2;DP=616;FractionInformativeReads=1;MQ=60;set=variant7-variant14-variant20-variant25-variant26-variant41-variant42	GT:DP:GQ:SB	0/2:72:99:20,25,11,16
chr2	27477627	.	AACACACACACAC	AACACACAC,AACACACACACACAC,AACACACACAC,AACACACACACACACACAC,AAC,AACACAC,AACACACACACACACAC,A	1079.07	PASS	AC=1,0,0,0,1,0,0,0;AF=0.197,0.132,0.145,0.013,0.026,0.079,0.026,0.013;AN=2;DP=1353;set=variant2-filterInvariant3-variant4-variant6-filterInvariant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	5/1:29:99:0,0,18,11
chr2	27478231	.	A	G	1537.53	PASS	AC=1;AF=0.5;AN=2;DP=189;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,42:85:99:1051,0,1114:21,22,21,21
chr2	27479777	.	C	A	1084.72	PASS	AC=1;AF=0.5;AN=2;DP=179;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,49:81:99:1294,0,756:17,15,26,23
chr2	27479936	.	A	G	1057.2	PASS	AC=1;AF=0.5;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,37:79:99:889,0,1125:24,18,20,17
chr2	27481652	.	A	C	866.84	PASS	AC=1;AF=0.5;AN=2;DP=295;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,73:154:99:1884,0,2237:40,41,40,33
chr2	27485814	.	A	G	714.1	PASS	AC=1;AF=0.5;AN=2;DP=161;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:673,0,1127:13,25,11,16
chr2	27486019	.	A	C	154.83	PASS	AC=1;AF=0.5;AN=2;DP=928;MQ=60;set=variant2-variant4-variant5-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant20-filterInvariant22-variant24-variant25-filterInvariant27-variant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant36-variant40-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:86:86,0,262:1,11,7,0
chr2	27500381	.	T	C	65.95	PASS	AC=2;AF=0.614;AN=2;DP=347;FractionInformativeReads=1;set=variant2-variant4-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant26-variant27-variant28-variant30-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:983,78,0:0,0,21,5
chr2	27504312	.	A	G	318.03	PASS	AC=1;AF=0.579;AN=2;DP=403;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant27-variant28-variant30-variant33-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:118,0,332:5,6,0,4
chr2	27522543	.	CCTATCTATCTAT	CCTATCTATCTATCTAT,CCTATCTATCTATCTATCTAT,CCTATCTAT,C	594.56	PASS	AC=1,1,0,0;AF=0.474,0.167,0.038,0.013;AN=2;DP=1958;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:24:99:0,0,9,15
chr2	27527969	.	C	G	827.73	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=4.537;FractionInformativeReads=1;MQ=60;MQRankSum=-2.157;QD=11.34;ReadPosRankSum=-0.425;SOR=0.541;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,36:73:99:856,0,898:15,22,19,17
chr2	27528692	.	T	C	383.07	PASS	AC=2;AF=0.614;AN=2;DP=888;MQ=60;set=variant2-variant4-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant26-variant27-variant28-variant30-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1594,164,0:0,0,28,27
chr2	27532420	.	C	G	748.79	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=0;FractionInformativeReads=0.98;MQ=60;MQRankSum=0.275;QD=14.98;ReadPosRankSum=0.498;SOR=0.789;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,29:49:99:777,0,438:12,8,18,11
chr2	27535311	.	T	TG	2624.78	PASS	AC=2;AF=1;AN=2;DP=6101;FS=0;MQ=60;MQRankSum=1.015;ReadPosRankSum=-0.237;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4941,421,0:0,0,76,61
chr2	27539180	.	C	T	636.2	PASS	AC=1;AF=0.5;AN=2;DP=140;MQ=60;set=variant10-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,31:49:99:747,0,449:5,13,13,18
chr2	27548038	.	A	C	52.74	PASS	AC=1;AF=0.58;AN=2;DP=182;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,10:12:13:370,0,13:1,1,1,9
chr2	27550967	.	A	G	707.59	PASS	AC=1;AF=0.574;AN=2;DP=2970;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,50:97:99:1104,0,1117:21,26,24,26
chr2	27556485	.	A	G	229.18	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=1.922;FractionInformativeReads=1;MQ=60;MQRankSum=0.228;QD=11.46;ReadPosRankSum=1.064;SOR=1.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:257,0,275:7,4,7,2
chr2	27556721	.	G	A	1540.23	PASS	AC=2;AF=0.603;AN=2;DP=3262;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2868,270,0:0,0,42,48
chr2	27558252	.	A	G	981.98	PASS	AC=2;AF=0.611;AN=2;DP=1942;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2285,225,0:0,0,45,30
chr2	27579172	.	T	C	1129.96	PASS	AC=1;AF=0.5;AN=2;DP=417;FractionInformativeReads=1;MQ=60;set=variant14-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,63:117:99:1641,0,1480:34,20,31,32
chr2	27579231	.	T	C	1696.68	PASS	AC=1;AF=0.574;AN=2;DP=3839;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,80:146:99:1983,0,1522:37,29,41,39
chr2	27579954	.	G	C	365.82	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.668;QD=16.63;ReadPosRankSum=1.135;SOR=0.724;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:394,0,258:2,7,3,10
chr2	27587922	.	CTTTT	C,CTTT	76.91	PASS	AC=0,1;AF=0.022,0.522;AN=2;DP=400;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant23-variant27-variant28-variant32-variant33-variant35-variant38-variant39-filterInvariant41-variant43	GT:DP:GQ:SB	0/2:12:69:2,6,0,4
chr2	27589810	.	T	C	1626.39	PASS	AC=1;AF=0.571;AN=2;DP=3897;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,61:118:99:1613,0,1357:32,25,34,27
chr2	27591708	.	G	A	304.24	PASS	AC=1;AF=0.5;AN=2;DP=166;FractionInformativeReads=1;MQ=60;set=variant14-variant26-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:765,0,442:7,8,11,12
chr2	27597338	.	C	A	369.23	PASS	AC=2;AF=0.6;AN=2;DP=193;FractionInformativeReads=1;MQ=60;set=variant14-variant26-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1489,135,0:0,0,21,24
chr2	27598097	.	T	C	733.61	PASS	AC=2;AF=0.632;AN=2;DP=1931;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2088,162,0:0,0,12,42
chr2	27606098	.	A	G	896.83	PASS	AC=2;AF=0.977;AN=2;DP=1618;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1247,99,0:0,0,28,5
chr2	27609212	.	T	C	564.77	PASS	AC=1;AF=0.5;AN=2;DP=276;MQ=60;set=variant14-variant26-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:505,0,448:8,8,7,13
chr2	27651375	.	C	T	1369.7	PASS	AC=2;AF=0.633;AN=2;DP=4142;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,125:126:99:3651,365,0:0,1,53,72
chr2	27656822	.	G	GA	1547.13	PASS	AC=2;AF=0.638;AN=2;DP=3479;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3734,304,0:0,0,47,53
chr2	27667184	.	G	A	346.53	PASS	AC=2;AF=0.6;AN=2;DP=174;FractionInformativeReads=1;MQ=60;set=variant14-variant26-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:964,81,0:0,0,13,14
chr2	27667520	.	T	TTTTG	238.53	PASS	AC=2;AF=0.638;AN=2;DP=415;MQ=60;set=variant2-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:315,21,0:0,0,2,5
chr2	27677778	.	C	T	76.7	PASS	AC=2;AF=0.6;AN=2;DP=66;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant26-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:428,42,0:0,0,3,11
chr2	27685388	.	G	A	205.56	PASS	AC=2;AF=0.633;AN=2;DP=499;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:929,69,0:0,0,20,3
chr2	27712408	.	C	T	1738.98	PASS	AC=2;AF=0.6;AN=2;DP=743;MQ=60;set=variant14-variant26-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4677,455,0:0,0,74,78
chr2	27715760	.	G	A	1287	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.514;QD=11.7;ReadPosRankSum=-2.166;SOR=0.665;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:53,57:110:99:1315,0,1189:21,32,23,34
chr2	27720385	.	C	T	411.92	PASS	AC=2;AF=0.6;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant14-variant26-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1659,147,0:0,0,26,23
chr2	27730817	.	G	A	1105.11	PASS	AC=1;AF=0.5;AN=2;DP=328;FractionInformativeReads=1;MQ=60;set=variant14-variant26-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,36:73:99:1033,0,1043:18,19,16,20
chr2	27730940	.	T	C	936.02	PASS	AC=2;AF=0.647;AN=2;DP=3037;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3409,318,0:0,0,59,47
chr2	27732642	.	CAA	CA,CAAAA,C,CAAA	245.95	PASS	AC=0,0,0,2;AF=0.176,0.324,0.029,0.118;AN=2;DP=306;MQ=60;set=variant-variant3-variant7-variant10-variant12-variant13-variant15-filterInvariant22-variant23-variant25-variant27-variant28-variant31-variant32-variant35-variant39-variant41	GT:DP:GQ:SB	4/4:7:13:0,1,0,6
chr2	27760318	.	G	A	1464.53	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=1.563;FractionInformativeReads=1;MQ=60;MQRankSum=-0.769;QD=13.44;ReadPosRankSum=1.016;SOR=0.535;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,65:109:99:1493,0,1112:19,25,31,34
chr2	27789488	.	CT	CTT,C	108.39	PASS	AC=0,1;AF=0.333,0.167;AN=2;DP=86;MQ=60;set=variant2-filterInvariant17-variant41	GT:DP:GQ:SB	0/2:22:99:8,3,8,3
chr2	27789861	.	T	A	2189.38	PASS	AC=1;AF=0.567;AN=2;DP=1931;MQ=60;set=variant-variant3-variant6-variant7-variant19-variant20-variant22-variant23-variant26-variant31-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,45:115:99:1085,0,2000:29,41,22,23
chr2	27801403	.	C	G	4001.6	PASS	AC=2;AF=0.662;AN=2;DP=3158;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:4591,319,0:0,0,45,59
chr2	27801418	.	C	A	3925.31	PASS	AC=2;AF=0.662;AN=2;DP=3143;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:4398,307,0:0,0,44,57
chr2	27801493	.	T	C	1115.64	PASS	AC=1;AF=0.56;AN=2;DP=2167;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant11-variant12-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant29-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,38:90:99:993,0,1339:28,24,18,20
chr2	27802805	.	A	G	2321.38	PASS	AC=1;AF=0.571;AN=2;DP=2082;MQ=60;set=variant-variant3-variant6-variant7-variant19-variant20-variant22-variant23-variant26-variant31-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,83:143:99:2078,0,1597:29,31,43,40
chr2	27804432	.	T	C	532.46	PASS	AC=2;AF=0.708;AN=2;DP=3863;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:12,113:125:99:3608,288,0:5,7,60,53
chr2	27824168	.	G	C	1101.95	PASS	AC=1;AF=0.567;AN=2;DP=1668;MQ=60;set=variant-variant3-variant6-variant7-variant19-variant20-variant22-variant23-variant26-variant31-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,34:84:99:829,0,1425:29,21,22,12
chr2	27830990	.	G	T	2120.96	PASS	AC=2;AF=0.662;AN=2;DP=2557;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2498,226,0:0,0,18,58
chr2	27838058	.	C	A	2699.85	PASS	AC=2;AF=0.662;AN=2;DP=2730;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2424,235,0:0,0,41,38
chr2	27839107	.	T	C	3875.27	PASS	AC=2;AF=0.662;AN=2;DP=3965;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2963,294,0:0,0,49,49
chr2	27844601	.	T	G	2194.16	PASS	AC=1;AF=0.533;AN=2;DP=2786;MQ=60;set=variant-variant3-variant6-variant7-variant19-variant20-variant22-variant23-variant26-variant31-variant34-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:122,76:198:99:1793,0,3049:68,54,45,31
chr2	27848876	.	ATAATT	A	169.67	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=59.2;MQRankSum=0.736;QD=28.28;ReadPosRankSum=0.736;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:57:207,0,57:1,0,3,2
chr2	27851120	.	T	C	789.9	PASS	AC=1;AF=0.647;AN=2;DP=1613;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,28:48:99:702,0,537:14,6,18,10
chr2	27851460	.	C	T	1537.14	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=0.72;FractionInformativeReads=1;MQ=60;MQRankSum=-1.337;QD=13.72;ReadPosRankSum=2.51;SOR=0.601;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,63:112:99:1565,0,1236:19,30,26,37
chr2	27852117	.	A	AGGTCTT	3848.59	PASS	AC=1;AF=0.647;AN=2;DP=4233;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,62:139:99:2345,0,8035:36,41,25,37
chr2	27852118	.	A	C	3857.48	PASS	AC=1;AF=0.647;AN=2;DP=3895;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,54:131:99:2345,0,8035:36,41,22,32
chr2	27852637	.	A	G	2022.74	PASS	AC=1;AF=0.647;AN=2;DP=2320;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,52:80:99:1567,0,647:21,7,34,18
chr2	27853976	.	T	G	284.05	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=1.399;FractionInformativeReads=1;MQ=60;MQRankSum=0.959;QD=7.1;ReadPosRankSum=-0.133;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,12:40:99:312,0,770:9,19,3,9
chr2	27855397	.	A	T	1377.54	PASS	AC=1;AF=0.571;AN=2;DP=1628;MQ=60;set=variant-variant3-variant6-variant7-variant19-variant20-variant22-variant23-variant26-variant31-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,39:84:99:1045,0,1188:28,17,22,17
chr2	27857992	.	T	A	3244.1	PASS	AC=2;AF=0.662;AN=2;DP=4113;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3957,381,0:0,0,73,55
chr2	27858112	.	G	A	1774.55	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=1.647;FractionInformativeReads=1;MQ=60;MQRankSum=-0.7;QD=16.58;ReadPosRankSum=1.155;SOR=0.507;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,69:107:99:1803,0,904:15,23,31,38
chr2	27858167	.	CT	CTTTTTTT,CTT,CTTTTTTTT,C,CTTTTTTTTT,CTTTTTT,CTTTTTTTTTT	1336.45	PASS	AC=0,0,1,0,0,0,0;AF=0.106,0.091,0.212,0.091,0.076,0.03,0.03;AN=2;DP=2295;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-filterInvariant10-variant12-filterInvariant13-filterInvariant15-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/3:40:99:3,20,9,8
chr2	27863073	.	C	A	175.02	PASS	AC=1;AF=0.5;AN=2;DP=35;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:213,0,257:2,7,1,6
chr2	27873326	.	C	G	125.28	PASS	AC=1;AF=0.567;AN=2;DP=488;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant16-variant19-variant20-variant22-variant23-variant26-variant31-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:580,0,592:12,8,12,12
chr2	27874494	.	T	C	4395.25	PASS	AC=1;AF=0.5;AN=2;DP=319;FS=1.874;FractionInformativeReads=0.994;MQ=60;MQRankSum=4.28;QD=13.78;ReadPosRankSum=1.262;SOR=0.586;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:144,173:317:99:4423,0,3677:84,60,96,77
chr2	27875036	.	TAAA	T	575.84	PASS	AC=1;AF=0.727;AN=2;DP=228;FS=0;MQ=60;set=variant-variant7-variant16-variant20-variant22-variant26-variant31-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:115,0,158:3,1,3,0
chr2	27875041	.	TA	T	576.05	PASS	AC=1;AF=0.727;AN=2;DP=242;FS=0;MQ=60;set=variant-variant7-variant16-variant20-variant22-variant26-variant31-variant34-variant40-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:115,0,158:3,1,3,0
chr2	27875042	.	A	T	444.91	PASS	AC=1;AF=0.957;AN=2;DP=652;FS=0;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:117,0,115:3,0,3,1
chr2	27884878	.	C	T	18129.5	PASS	AC=2;AF=1;AN=2;DP=20856;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,483:484:99:14308,1439,0:1,0,252,231
chr2	27929616	.	CT	C	211.99	PASS	AC=2;AF=0.932;AN=2;DP=1095;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:59:506,59,0:0,0,5,14
chr2	27995781	.	A	C	207.11	PASS	AC=1;AF=0.829;AN=2;DP=502;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,15:19:99:485,0,126:0,4,2,13
chr2	28050310	.	C	T	231.04	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:318,0,349:9,1,9,0
chr2	28069713	.	T	G	298.89	PASS	AC=1;AF=0.533;AN=2;DP=245;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant14-variant16-variant19-variant20-variant22-variant23-variant26-variant31-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:280,0,172:4,1,7,1
chr2	28070094	.	TA	T	110.04	PASS	AC=1;AF=0.5;AN=2;DP=32;MQ=60;set=variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:129,0,268:0,11,0,6
chr2	28084541	.	T	G	93.65	PASS	AC=1;AF=0.5;AN=2;DP=35;FractionInformativeReads=1;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:152,0,247:3,7,4,3
chr2	28268467	.	C	T	305.4	PASS	AC=2;AF=0.903;AN=2;DP=234;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:126,12,0:0,0,3,1
chr2	28464388	.	G	A	622.2	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=4.63;FractionInformativeReads=1;MQ=60;MQRankSum=-0.842;QD=10.73;ReadPosRankSum=-1.528;SOR=0.218;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:650,0,1065:5,26,8,19
chr2	28464435	.	T	C	1335.86	PASS	AC=2;AF=1;AN=2;DP=903;FS=0;MQRankSum=0.528;ReadPosRankSum=1.583;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1232,84,0:0,0,0,28
chr2	28532754	.	A	G	45.18	PASS	AC=2;AF=0.538;AN=2;DP=183;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant14-variant17-variant18-variant29-variant30-variant31-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:483,45,0:0,0,11,4
chr2	28634790	.	G	A	1596.22	PASS	AC=1;AF=0.574;AN=2;DP=2957;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant33-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,62:110:99:1424,0,1323:25,23,30,32
chr2	28635740	.	T	C	2692.03	PASS	AC=1;AF=0.645;AN=2;DP=3038;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,43:81:99:1027,0,857:17,21,19,24
chr2	28636644	.	A	G	1009.02	PASS	AC=1;AF=0.589;AN=2;DP=2863;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant33-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,58:129:99:1285,0,1835:34,37,28,30
chr2	28636740	.	A	G	1312.88	PASS	AC=1;AF=0.603;AN=2;DP=3614;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant33-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,50:107:99:1312,0,1531:23,34,21,29
chr2	28638358	.	G	C	738.64	PASS	AC=2;AF=1;AN=2;DP=2063;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1298,126,0:0,0,20,22
chr2	28639002	.	C	T	322.05	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=2.441;FractionInformativeReads=0.943;MQ=60;MQRankSum=0.02;QD=6.08;ReadPosRankSum=0.34;SOR=0.98;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,19:50:99:350,0,859:15,16,11,8
chr2	28639331	.	CTTT	CT,CTT,C	812.04	PASS	AC=1,1,0;AF=0.568,0.386,0.023;AN=2;DP=2275;set=Intersection	GT:DP:GQ:SB	1/2:31:99:1,0,16,14
chr2	28639641	.	C	G	10120.2	PASS	AC=1;AF=0.689;AN=2;DP=10325;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:155,128:283:99:3200,0,3697:89,66,72,56
chr2	28639816	.	CT	C,CTT,CTTTT,CTTTTT	142.46	PASS	AC=1,0,0,0;AF=0.338,0.1,0.05,0.025;AN=2;DP=6932;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant12-filterInvariant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-variant31-filterInvariant32-variant33-variant34-filterInvariant35-variant36-variant38-filterInvariant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:102:99:21,41,14,26
chr2	28718897	.	A	G	3297.43	PASS	AC=2;AF=1;AN=2;DP=5882;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,131:132:99:3966,358,0:1,0,63,68
chr2	28748346	.	T	C	305.57	PASS	AC=1;AF=0.545;AN=2;DP=131;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant11-variant20-variant22-variant25-variant30-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:79:79,0,328:0,9,0,3
chr2	28748857	.	T	C	5104.34	PASS	AC=2;AF=0.989;AN=2;DP=8919;MQ=60;MQRankSum=0.824;ReadPosRankSum=0.724;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,202:202:99:6227,606,0:0,0,97,105
chr2	28748916	.	A	C	4121.95	PASS	AC=1;AF=0.788;AN=2;DP=6578;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,79:161:99:1988,0,2026:31,51,29,50
chr2	28752498	.	T	C	1392.84	PASS	AC=2;AF=0.989;AN=2;DP=2215;FS=0;MQ=60;MQRankSum=0.867;ReadPosRankSum=-1.382;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1601,153,0:0,0,29,22
chr2	28752555	.	T	C	1977.84	PASS	AC=2;AF=0.943;AN=2;DP=3140;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2060,213,0:0,0,36,35
chr2	28752727	.	C	G	967.44	PASS	AC=2;AF=0.989;AN=2;DP=994;FS=0;FractionInformativeReads=1;MQRankSum=-1.848;ReadPosRankSum=2.266;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:615,48,0:0,0,5,11
chr2	28752741	.	A	G	876.22	PASS	AC=2;AF=0.943;AN=2;DP=787;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:450,30,0:0,0,1,9
chr2	28761257	.	A	G	1680.07	PASS	AC=2;AF=0.92;AN=2;DP=2963;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1869,189,0:0,0,22,41
chr2	28761282	.	A	G	1268.25	PASS	AC=2;AF=0.92;AN=2;DP=2241;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1488,146,0:0,0,18,31
chr2	28761481	.	C	T	167.95	PASS	AC=2;AF=0.97;AN=2;DP=143;FS=0;MQ=60;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,1,3
chr2	28761484	.	G	A	167.95	PASS	AC=2;AF=0.97;AN=2;DP=143;FS=0;MQ=60;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,1,3
chr2	28763374	.	G	T	1451.88	PASS	AC=1;AF=0.645;AN=2;DP=4631;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:80,71:151:99:1623,0,2097:37,43,38,33
chr2	28771452	.	CTA	C,CTATATA	1691.59	PASS	AC=2,0;AF=0.955,0.023;AN=2;DP=2420;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:42:99:0,0,24,18
chr2	28771624	.	T	G	4325.26	PASS	AC=2;AF=0.932;AN=2;DP=5223;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4335,414,0:0,0,80,58
chr2	28771897	.	T	C	572.23	PASS	AC=1;AF=0.756;AN=2;DP=688;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:189,0,242:0,6,1,4
chr2	28785754	.	G	C	599.08	PASS	AC=2;AF=0.977;AN=2;DP=599;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:783,72,0:0,0,16,8
chr2	28785768	.	A	G	337.57	PASS	AC=1;AF=0.5;AN=2;DP=364;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant9-variant10-variant11-variant13-variant17-variant20-variant21-variant22-variant25-variant27-variant29-variant30-variant34-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:228,0,560:14,6,7,4
chr2	28788428	.	AG	A	1634.85	PASS	AC=1;AF=0.767;AN=2;DP=2762;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,33:82:99:989,0,1565:18,31,11,22
chr2	28789643	.	T	C	1617.54	PASS	AC=1;AF=0.667;AN=2;DP=8501;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:114,114:228:99:2714,0,2652:54,60,57,57
chr2	28795893	.	G	A	851.49	PASS	AC=2;AF=0.786;AN=2;DP=809;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1294,87,0:0,0,25,4
chr2	28795899	.	C	T	888.08	PASS	AC=2;AF=0.756;AN=2;DP=856;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1336,90,0:0,0,26,4
chr2	28795962	.	G	A	1941.85	PASS	AC=2;AF=0.786;AN=2;DP=2950;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2323,225,0:0,0,51,24
chr2	28800894	.	C	T	114.5	PASS	AC=1;AF=0.6;AN=2;DP=474;MQ=60;set=variant-variant3-variant5-variant11-variant13-variant14-variant15-variant16-variant22-variant24-variant28-variant29-variant30-variant31-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:263,0,541:14,3,7,1
chr2	28802186	.	A	G	98.43	PASS	AC=1;AF=0.605;AN=2;DP=175;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant10-variant13-variant14-variant16-variant21-variant22-variant29-variant30-variant31-variant33-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,122:3,0,2,0
chr2	28802355	.	G	C	1342.87	PASS	AC=1;AF=0.604;AN=2;DP=1796;MQ=60;set=variant-variant3-variant5-variant7-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,31:64:99:818,0,801:19,14,19,12
chr2	28804835	.	GA	G	197.85	PASS	AC=1;AF=0.568;AN=2;DP=912;set=variant-variant3-variant5-variant7-variant10-variant11-variant13-variant14-variant16-variant17-variant22-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:462,0,516:17,8,14,8
chr2	28805410	.	C	A	716.78	PASS	AC=1;AF=0.568;AN=2;DP=2063;MQ=60;set=variant-variant3-variant5-variant7-variant10-variant11-variant13-variant14-variant16-variant17-variant22-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:911,0,1170:19,26,21,21
chr2	28808539	.	G	A	223.11	PASS	AC=1;AF=0.604;AN=2;DP=463;MQ=60;set=variant-variant3-variant5-variant7-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:309,0,267:7,3,8,2
chr2	28812285	.	T	C	608.67	PASS	AC=1;AF=0.604;AN=2;DP=904;MQ=60;set=variant-variant3-variant5-variant7-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,25:39:99:711,0,277:11,3,18,7
chr2	28812982	.	C	T	1483.88	PASS	AC=1;AF=0.604;AN=2;DP=2665;MQ=60;set=variant-variant3-variant5-variant7-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,62:125:99:1571,0,1549:25,38,21,41
chr2	28814033	.	A	G	1381.11	PASS	AC=1;AF=0.553;AN=2;DP=3787;MQ=60;set=variant-variant3-variant5-variant7-variant10-variant11-variant13-variant14-variant16-variant18-variant21-variant22-variant29-variant30-variant31-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:91,107:198:99:2460,0,2442:40,51,50,57
chr2	28814548	.	A	T	689.53	PASS	AC=1;AF=0.553;AN=2;DP=2078;MQ=60;set=variant-variant3-variant5-variant7-variant10-variant11-variant13-variant14-variant16-variant18-variant21-variant22-variant29-variant30-variant31-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,44:97:99:933,0,1296:31,22,25,19
chr2	28814683	.	T	C	506.32	PASS	AC=1;AF=0.553;AN=2;DP=767;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant7-variant10-variant11-variant13-variant14-variant16-variant18-variant21-variant22-variant29-variant30-variant31-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,18:46:99:540,0,820:6,22,3,15
chr2	28816948	.	C	T	3075.89	PASS	AC=1;AF=0.842;AN=2;DP=3991;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:64,50:114:99:1091,0,1663:31,33,24,26
chr2	28817459	.	CTG	C	2122.79	PASS	AC=1;AF=0.757;AN=2;DP=2178;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,31:64:99:1186,0,1310:18,15,22,9
chr2	28817870	.	C	T	175.34	PASS	AC=1;AF=0.575;AN=2;DP=941;MQ=60;set=variant6-variant7-variant13-variant14-variant15-variant17-variant19-variant20-variant24-variant25-variant28-variant29-variant30-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:634,0,481:10,7,11,11
chr2	28818367	.	T	G	1296.36	PASS	AC=1;AF=0.577;AN=2;DP=1551;FractionInformativeReads=1;MQ=60;set=variant13-variant14-variant20-variant24-variant28-variant29-variant30-variant35-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,48:103:99:1375,0,1525:37,18,30,18
chr2	28818931	.	G	A	50.98	PASS	AC=1;AF=0.625;AN=2;DP=84;FractionInformativeReads=1;MQ=60;set=variant6-variant14-variant15-variant19-variant24-variant28-variant29-variant30-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:28:160,0,28:1,1,1,4
chr2	28818957	.	G	T	157.44	PASS	AC=2;AF=0.952;AN=2;DP=127;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:94,9,0:0,0,1,2
chr2	28821662	.	C	T	737.87	PASS	AC=1;AF=0.703;AN=2;DP=2844;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,43:84:99:1180,0,1079:15,26,11,32
chr2	28824793	.	C	G	1237.72	PASS	AC=1;AF=0.703;AN=2;DP=7084;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,105:217:99:2726,0,2948:62,50,54,51
chr2	28826754	.	C	T	41.94	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.064;QD=1.91;ReadPosRankSum=0.128;SOR=0.551;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:18,4:22:70:70,0,519:13,5,3,1
chr2	28840344	.	G	T	540.4	PASS	AC=1;AF=0.671;AN=2;DP=860;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:340,0,512:13,0,9,3
chr2	28841021	.	G	A	239.14	PASS	AC=1;AF=0.676;AN=2;DP=893;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:303,0,270:7,3,8,2
chr2	28841049	.	G	A	151.61	PASS	AC=1;AF=0.609;AN=2;DP=1195;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:366,0,374:8,4,9,2
chr2	28847806	.	C	G	1211.17	PASS	AC=1;AF=0.633;AN=2;DP=3497;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant28-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,42:95:99:1087,0,1474:33,20,28,14
chr2	28849435	.	T	C	761.61	PASS	AC=1;AF=0.595;AN=2;DP=990;MQ=60;set=variant3-variant5-variant6-variant8-variant11-variant12-variant13-variant16-variant22-variant23-variant27-variant29-variant31-variant32-variant34-variant35-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,30:56:99:922,0,692:9,17,9,21
chr2	28849461	.	CCCCGAGCTCCTTGCT	C	280.57	PASS	AC=1;AF=0.55;AN=2;DP=594;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:461,0,849:5,17,3,10
chr2	28849473	.	T	C	496.39	PASS	AC=1;AF=0.629;AN=2;DP=805;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,20:33:99:567,0,466:3,10,5,15
chr2	28851694	.	A	G	400.27	PASS	AC=1;AF=0.553;AN=2;DP=349;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:131,0,302:6,3,1,4
chr2	28853352	.	C	T	214.91	PASS	AC=1;AF=0.604;AN=2;DP=896;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant26-variant28-variant29-variant30-variant32-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,31:52:99:868,0,543:16,5,23,8
chr2	28853377	.	T	C	368.01	PASS	AC=1;AF=0.604;AN=2;DP=1332;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant26-variant28-variant29-variant30-variant32-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,42:74:99:1107,0,840:23,9,28,14
chr2	28854958	.	C	T	1615.29	PASS	AC=1;AF=0.55;AN=2;DP=3470;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,73:149:99:1716,0,1982:37,39,42,31
chr2	28855088	.	CT	CTTT,CTT,C	1528.5	PASS	AC=0,1,0;AF=0.379,0.121,0.121;AN=2;DP=3696;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:106:99:23,34,17,32
chr2	28855254	.	G	GGGATAGAAT	237.6	PASS	AC=1;AF=0.553;AN=2;DP=388;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:410,0,1026:1,9,5,6
chr2	28855918	.	A	AG	2451.93	PASS	AC=2;AF=1;AN=2;DP=5605;FS=0;MQ=60;MQRankSum=0.818;ReadPosRankSum=0.845;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:4304,364,0:0,0,61,60
chr2	28856047	.	T	C	773.4	PASS	AC=1;AF=0.55;AN=2;DP=1260;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:774,0,1096:12,26,5,22
chr2	28863738	.	A	G	124.67	PASS	AC=1;AF=0.55;AN=2;DP=1058;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant20-variant25-variant28-variant30-variant32-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,30:59:99:737,0,753:18,11,17,13
chr2	28865760	.	T	C	634.44	PASS	AC=1;AF=0.615;AN=2;DP=2964;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant20-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:1043,0,923:22,14,20,16
chr2	28865968	.	T	C	501.4	PASS	AC=1;AF=0.635;AN=2;DP=1569;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant20-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:747,0,558:7,15,11,15
chr2	28866032	.	A	C	438.32	PASS	AC=1;AF=0.568;AN=2;DP=1139;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant20-variant25-variant28-variant30-variant32-variant34-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:574,0,489:10,12,10,14
chr2	28866469	.	A	C	380.3	PASS	AC=1;AF=0.635;AN=2;DP=1139;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant13-variant14-variant15-variant17-variant20-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:581,0,590:9,11,10,10
chr2	28975107	.	G	C	2304.86	PASS	AC=2;AF=0.782;AN=2;DP=2712;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2792,242,0:0,0,18,63
chr2	29001691	.	A	G	1775.43	PASS	AC=1;AF=0.75;AN=2;DP=2050;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,43:76:99:1214,0,975:24,9,29,14
chr2	29004923	.	G	A	457.42	PASS	AC=2;AF=1;AN=2;DP=531;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:513,39,0:0,0,1,12
chr2	29006983	.	C	T	288.86	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.566;QD=26.26;ReadPosRankSum=-0.382;SOR=1.802;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:90:317,0,90:0,3,0,8
chr2	29022282	.	TTTAAC	T	3150.53	PASS	AC=1;AF=0.5;AN=2;DP=201;FS=4.134;FractionInformativeReads=0.98;MQ=60;MQRankSum=-0.595;QD=15.67;ReadPosRankSum=1.186;SOR=1.007;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:113,84:197:99:3188,0,7532:58,55,49,35
chr2	29023092	.	CTTT	CTT,CTTTT,C,CT,CTTTTTT,CTTTTTTTTTTTTT	578.73	PASS	AC=0,1,0,0,0,0;AF=0.271,0.171,0.043,0.1,0.014,0.014;AN=2;DP=3320;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-variant8-filterInvariant9-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant24-filterInvariant28-variant29-variant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-filterInvariant39-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/2:33:66:4,21,1,7
chr2	29023117	.	AGTT	A	182.11	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=15.178;FractionInformativeReads=0.739;MQ=60;MQRankSum=2.072;QD=3.96;ReadPosRankSum=3.297;SOR=4.125;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,12:34:99:219,0,789:8,14,0,12
chr2	29023749	.	A	G	2973.82	PASS	AC=1;AF=0.7;AN=2;DP=5889;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,90:185:99:2257,0,2674:37,58,39,51
chr2	29024298	.	CT	C,CTT	58.32	PASS	AC=0,1;AF=0.455,0.045;AN=2;DP=1585;MQ=60;set=filterInvariant2-filterInvariant4-filterInvariant6-filterInvariant8-variant10-filterInvariant16-filterInvariant23-filterInvariant27-filterInvariant36-filterInvariant37-variant41	GT:DP:GQ:SB	0/2:98:99:21,38,14,25
chr2	29024595	.	A	G	2113.43	PASS	AC=1;AF=0.5;AN=2;DP=147;FS=6.332;FractionInformativeReads=1;MQ=60;MQRankSum=0.11;QD=14.38;ReadPosRankSum=2.831;SOR=0.343;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,75:147:99:2142,0,2218:49,23,43,32
chr2	29025479	.	A	G	5870.03	PASS	AC=1;AF=0.743;AN=2;DP=6501;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,91:163:99:2271,0,1824:35,37,37,54
chr2	29039007	.	T	C	1767.09	PASS	AC=1;AF=0.5;AN=2;DP=167;FS=4.73;FractionInformativeReads=1;MQ=60;MQRankSum=-1.234;QD=10.58;ReadPosRankSum=3.002;SOR=0.412;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:97,70:167:99:1795,0,2553:35,62,31,39
chr2	29039138	.	G	T	754.17	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=3.083;FractionInformativeReads=1;MQ=60;MQRankSum=0.447;QD=18.39;ReadPosRankSum=1.935;SOR=1.402;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,26:41:99:782,0,345:6,9,7,19
chr2	29041877	.	T	C	881.05	PASS	AC=1;AF=0.707;AN=2;DP=1320;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:571,0,620:16,5,14,6
chr2	29045323	.	C	T	1920.76	PASS	AC=2;AF=1;AN=2;DP=2713;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1366,132,0:0,0,19,25
chr2	29052256	.	T	C	311.99	PASS	AC=2;AF=0.907;AN=2;DP=1366;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1111,93,0:0,0,8,23
chr2	29073249	.	T	C	2935.21	PASS	AC=1;AF=0.5;AN=2;DP=233;FS=2.229;FractionInformativeReads=1;MQ=60;MQRankSum=1.495;QD=12.6;ReadPosRankSum=-0.463;SOR=0.877;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:107,126:233:99:2963,0,2308:53,54,57,69
chr2	29087799	.	C	A	482.56	PASS	AC=1;AF=0.707;AN=2;DP=765;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant12-variant13-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:397,0,589:15,3,11,3
chr2	29092933	.	G	A	3080.35	PASS	AC=1;AF=0.5;AN=2;DP=216;FS=1.67;FractionInformativeReads=1;MQ=60;MQRankSum=-0.691;QD=14.26;ReadPosRankSum=-0.347;SOR=0.565;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:95,121:216:99:3109,0,2295:52,43,62,59
chr2	29117830	.	G	T	934.63	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.619;QD=11.26;ReadPosRankSum=-1.233;SOR=0.705;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,33:83:99:963,0,1619:8,42,5,28
chr2	29135468	.	C	G	1863.44	PASS	AC=1;AF=0.797;AN=2;DP=5753;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,67:166:99:1388,0,2468:54,45,35,32
chr2	29145663	.	GTT	G,GT,GTTTT,GTTTTT,GTTTTTT,GTTT,GTTTTTTT	1161.83	PASS	AC=0,1,0,0,1,0,0;AF=0.023,0.186,0.128,0.186,0.163,0.023,0.035;AN=2;DP=2496;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/5:44:99:5,2,24,13
chr2	29145725	.	G	T	1761.22	PASS	AC=1;AF=0.797;AN=2;DP=4430;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,51:105:99:1468,0,1526:31,23,24,27
chr2	29152384	.	T	G	454.27	PASS	AC=1;AF=0.618;AN=2;DP=328;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant9-variant14-variant15-variant22-variant25-variant31-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:99:430,0,187:6,0,11,4
chr2	29152456	.	A	G	151.18	PASS	AC=2;AF=0.775;AN=2;DP=2422;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1807,179,0:0,0,34,26
chr2	29158613	.	CAAAAAAA	CA,CAAAA,C,CAA,CAAA,CAAAAAA,CAAAAA	153.24	PASS	AC=0,0,0,1,0,0,0;AF=0.173,0.019,0.038,0.385,0.038,0.058,0.038;AN=2;DP=449;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant41-variant43-variant44	GT:DP:GQ:SB	0/4:16:95:0,5,2,9
chr2	29161010	.	G	A	1448.37	PASS	AC=2;AF=0.92;AN=2;DP=3861;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2491,240,0:0,0,35,45
chr2	29169612	.	T	C	1203.92	PASS	AC=1;AF=0.789;AN=2;DP=3273;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,44:82:99:1379,0,1006:26,12,24,20
chr2	29170730	.	GTT	G,GTTTT,GT,GTTTTT,GTTT,GTTTTTT	54.88	PASS	AC=0,0,0,1,0,0;AF=0.214,0.086,0.257,0.057,0.014,0.014;AN=2;DP=1583;set=filterInvariant-variant2-variant3-filterInvariant4-variant5-variant6-filterInvariant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:28:96:7,11,5,5
chr2	29221267	.	A	C	734.37	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0.978;FractionInformativeReads=1;MQ=60;MQRankSum=-0.939;QD=10.96;ReadPosRankSum=-1.381;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:763,0,996:12,25,11,19
chr2	29221994	.	G	T	1160.99	PASS	AC=1;AF=0.5;AN=2;DP=656;FractionInformativeReads=1;MQ=60;set=variant11-variant16-variant18-variant27-variant28-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,45:90:99:1128,0,1174:28,17,31,14
chr2	29222388	.	G	C	596.78	PASS	AC=1;AF=0.674;AN=2;DP=979;MQ=60;set=variant2-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant21-variant22-variant25-variant27-variant28-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:618,0,423:3,12,4,16
chr2	29225502	.	T	G	2682.37	PASS	AC=1;AF=0.5;AN=2;DP=1585;MQ=60;set=variant10-variant11-variant16-variant18-variant21-variant27-variant28-variant31-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,66:122:99:2603,0,2820:28,28,34,32
chr2	29225504	.	T	C	2682.37	PASS	AC=1;AF=0.5;AN=2;DP=1601;MQ=60;set=variant10-variant11-variant16-variant18-variant21-variant27-variant28-variant31-variant36-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,66:122:99:2603,0,2820:28,28,34,32
chr2	29225710	.	C	T	383.96	PASS	AC=1;AF=0.5;AN=2;DP=391;MQ=60;set=variant11-variant16-variant18-variant27-variant28-variant31-variant33-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,25:43:99:671,0,451:7,11,11,14
chr2	29226498	.	G	A	1071.21	PASS	AC=1;AF=0.814;AN=2;DP=4934;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,52:90:99:1279,0,946:16,22,20,32
chr2	29226512	.	A	G	880	PASS	AC=2;AF=0.942;AN=2;DP=4238;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2613,230,0:0,0,27,50
chr2	29226559	.	C	T	431.44	PASS	AC=2;AF=0.93;AN=2;DP=1896;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1776,132,0:0,0,11,33
chr2	29240005	.	T	C	1534.17	PASS	AC=1;AF=0.729;AN=2;DP=4301;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,47:110:99:1115,0,1566:31,32,27,20
chr2	29240466	.	G	C	150.2	PASS	AC=1;AF=0.5;AN=2;DP=95;MQ=60;set=variant11-variant16-variant27-variant28-variant31-variant33-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:306,0,208:6,0,7,2
chr2	29240783	.	A	G	935.12	PASS	AC=1;AF=0.64;AN=2;DP=3131;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant21-variant22-variant25-variant27-variant28-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,53:120:99:1218,0,1554:26,41,25,28
chr2	29245933	.	G	A	2311.54	PASS	AC=2;AF=0.672;AN=2;DP=5740;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:5890,610,0:0,0,104,100
chr2	29246044	.	T	C	1913.81	PASS	AC=2;AF=0.71;AN=2;DP=4050;MQ=60;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4565,446,0:0,0,62,87
chr2	29247304	.	C	T	1014.82	PASS	AC=1;AF=0.62;AN=2;DP=2107;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant16-variant20-variant21-variant23-variant24-variant26-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,35:80:99:915,0,1218:16,29,13,22
chr2	29249403	.	T	A,G	309.4	PASS	AC=1,0;AF=0.453,0.234;AN=2;DP=869;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:24:99:5,1,13,5
chr2	29249415	.	C	T	398.43	PASS	AC=1;AF=0.688;AN=2;DP=1047;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,19:27:99:535,0,238:7,1,14,5
chr2	29249670	.	C	G	1329.36	PASS	AC=1;AF=0.5;AN=2;DP=1157;FractionInformativeReads=1;MQ=60;set=variant11-variant16-variant18-variant27-variant28-variant31-variant33-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:58,61:119:99:1543,0,1439:30,28,32,29
chr2	29258674	.	T	C	337.35	PASS	AC=1;AF=0.5;AN=2;DP=155;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant14-variant16-variant18-variant27-variant28-variant31-variant33-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:275,0,188:1,6,1,7
chr2	29268289	.	A	C	74.88	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1085;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:66,32:98:99:208,0,1201:17,49,32,0
chr2	29268295	.	A	C	530.21	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1262;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:74,34:108:99:676,0,2706:19,55,34,0
chr2	29268300	.	A	C	505.18	PASS	AC=1;AF=0.5;AN=2;DP=1111;set=filterInvariant3-filterInvariant4-variant8-filterInvariant12-filterInvariant13-filterInvariant22-filterInvariant24-filterInvariant33-filterInvariant35-variant36-filterInvariant39-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:84,29:113:82:82,0,3910:27,57,29,0
chr2	29274720	.	A	G	2272.74	PASS	AC=1;AF=0.618;AN=2;DP=7538;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:114,101:215:99:3788,0,5992:52,62,46,55
chr2	29274730	.	G	T	4417.79	PASS	AC=1;AF=0.5;AN=2;DP=2612;FractionInformativeReads=1;MQ=60;set=variant11-variant14-variant16-variant18-variant27-variant28-variant31-variant33-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:108,98:206:99:3746,0,5780:51,57,45,53
chr2	29275272	.	T	C	598.01	PASS	AC=2;AF=0.743;AN=2;DP=1743;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1583,150,0:0,0,28,22
chr2	29275318	.	T	C	777.74	PASS	AC=2;AF=0.841;AN=2;DP=2245;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1545,147,0:0,0,28,21
chr2	29275612	.	A	G	637.8	PASS	AC=2;AF=0.791;AN=2;DP=2580;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,64:65:99:2027,156,0:1,0,27,37
chr2	29275685	.	C	T	1007.67	PASS	AC=1;AF=0.528;AN=2;DP=1098;MQ=60;set=variant3-variant10-variant11-variant14-variant16-variant18-variant21-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,30:59:99:755,0,878:12,17,19,11
chr2	29275940	.	A	G	1154.6	PASS	AC=2;AF=0.757;AN=2;DP=3053;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2216,201,0:0,0,30,37
chr2	29276010	.	G	T	333.67	PASS	AC=1;AF=0.615;AN=2;DP=1794;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,33:58:99:906,0,777:12,13,16,17
chr2	29276630	.	T	C	39.79	PASS	AC=1;AF=0.615;AN=2;DP=829;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:99:391,0,129:2,4,10,5
chr2	29277200	.	T	C	254.7	PASS	AC=1;AF=0.677;AN=2;DP=1034;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:394,0,364:3,9,8,9
chr2	29277355	.	C	G	229.36	PASS	AC=1;AF=0.677;AN=2;DP=500;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:273,0,225:6,0,6,2
chr2	29277386	.	A	AGGAGCGGG,AGGAGCGGGGG,AGGAGCGGGGGG,AGGAGC	146.74	PASS	AC=0,0,0,1;AF=0.25,0.25,0.125,0.063;AN=2;DP=120;MQ=60;set=variant2-variant5-variant8-variant22-variant30-variant36-variant39-variant41	GT:DP:GQ:SB	0/4:15:99:10,0,5,0
chr2	29277391	.	CGG	CG,GGG,TGG,C	250.41	PASS	AC=0,1,0,1;AF=0.455,0.227,0.045,0.045;AN=2;DP=235;FS=0;MQ=60;set=variant16-variant15-variant18-variant27-variant31-variant33-variant14-variant36-variant28-variant38-variant41	GT:DP:GQ:SB	4/2:14:99:0,0,14,0
chr2	29277403	.	T	G	216.86	PASS	AC=1;AF=0.5;AN=2;DP=236;MQ=60;set=variant-variant3-variant4-filterInvariant7-variant9-variant11-variant12-variant13-variant18-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:99:171,0,509:12,0,5,0
chr2	29279251	.	A	AT	632.14	PASS	AC=2;AF=1;AN=2;DP=1506;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,33:35:48:877,48,0:1,1,16,17
chr2	29279689	.	C	G	925.2	PASS	AC=1;AF=0.5;AN=2;DP=955;MQ=60;set=variant11-variant14-variant16-variant18-variant27-variant28-variant31-variant33-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,42:76:99:996,0,796:16,18,19,23
chr2	29280153	.	G	T	49.19	PASS	AC=1;AF=0.683;AN=2;DP=1426;FractionInformativeReads=1;MQ=60;set=filterInvariant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:566,0,646:13,9,13,9
chr2	29280261	.	A	G	490.11	PASS	AC=1;AF=0.615;AN=2;DP=1933;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,38:82:99:957,0,1189:25,19,23,15
chr2	29280745	.	G	A	435.94	PASS	AC=1;AF=0.683;AN=2;DP=1492;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,13:47:99:226,0,918:18,16,6,7
chr2	29280761	.	C	T	380.24	PASS	AC=1;AF=0.615;AN=2;DP=1306;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,10:43:99:159,0,938:18,15,5,5
chr2	29280791	.	G	A	375.72	PASS	AC=1;AF=0.615;AN=2;DP=1382;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,13:48:99:238,0,1040:17,18,7,6
chr2	29281458	.	G	A	382.45	PASS	AC=2;AF=1;AN=2;DP=650;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.714;ReadPosRankSum=1.531;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:375,36,0:0,0,6,6
chr2	29281584	.	G	C	60.2	PASS	AC=1;AF=0.615;AN=2;DP=526;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:265,0,271:6,4,7,3
chr2	29281798	.	T	TGG	224.59	PASS	AC=1;AF=0.525;AN=2;DP=2617;set=filterInvariant-variant3-filterInvariant4-filterInvariant5-variant8-variant9-filterInvariant13-filterInvariant16-variant18-filterInvariant20-variant23-variant26-filterInvariant27-variant30-variant35-variant36-variant37-filterInvariant39-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,20:95:99:145,0,2224:46,29,17,3
chr2	29281800	.	T	G,TGG	5450.61	PASS	AC=0,1;AF=0.281,0.359;AN=2;DP=4527;set=variant3-variant8-variant-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-filterInvariant24-variant25-variant26-variant27-variant29-variant2-variant4-variant30-variant32-filterInvariant33-variant10-variant35-variant36-variant37-filterInvariant38-variant39-variant41-variant44	GT:DP:GQ:SB	0/2:96:99:30,12,36,18
chr2	29281804	.	T	G,TGG,TGGGTGG,TGTGG	6417.9	PASS	AC=1,0,1,0;AF=0.667,0.25,0.014,0.014;AN=2;DP=5522;set=variant2-variant4-variant5-variant-variant7-variant3-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:DP:GQ:SB	1/3:92:99:2,0,61,29
chr2	29281867	.	A	G	3121.64	PASS	AC=1;AF=0.615;AN=2;DP=5314;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,101:190:99:2487,0,2503:37,52,49,52
chr2	29283072	.	C	T	346.67	PASS	AC=1;AF=0.683;AN=2;DP=1679;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,30:61:99:690,0,854:10,21,14,16
chr2	29283385	.	C	G	879.11	PASS	AC=1;AF=0.5;AN=2;DP=885;FractionInformativeReads=1;MQ=60;set=variant11-variant14-variant16-variant18-variant27-variant28-variant31-variant33-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,32:77:99:790,0,1255:22,23,16,16
chr2	29283421	.	G	A	589.29	PASS	AC=1;AF=0.683;AN=2;DP=1957;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,42:68:99:1154,0,617:13,13,19,23
chr2	29284678	.	G	A	426.84	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=8.471;FractionInformativeReads=1;MQ=60;MQRankSum=0.481;QD=11.86;ReadPosRankSum=0;SOR=0.105;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:455,0,483:13,2,13,8
chr2	29284806	.	A	G	2414.27	PASS	AC=2;AF=0.977;AN=2;DP=4125;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:2971,308,0:0,0,52,51
chr2	29284981	.	T	C	716.2	PASS	AC=2;AF=0.775;AN=2;DP=2401;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1849,177,0:0,0,29,30
chr2	29285065	.	A	G	1341.48	PASS	AC=2;AF=0.955;AN=2;DP=2313;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1574,144,0:0,0,22,26
chr2	29285150	.	T	C	1317.2	PASS	AC=2;AF=0.989;AN=2;DP=2886;FS=0;MQ=60;MQRankSum=-0.257;ReadPosRankSum=0.105;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2003,168,0:0,0,34,22
chr2	29285210	.	C	T	1914.03	PASS	AC=1;AF=0.708;AN=2;DP=3132;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,38:80:99:995,0,1116:26,16,24,14
chr2	29285254	.	C	T	1020.25	PASS	AC=1;AF=0.553;AN=2;DP=2026;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant16-variant20-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,47:106:99:1349,0,1554:37,22,28,19
chr2	29285575	.	C	T	2008.05	PASS	AC=1;AF=0.681;AN=2;DP=3440;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,57:91:99:1579,0,904:11,23,20,37
chr2	29285631	.	A	G	1810.9	PASS	AC=1;AF=0.681;AN=2;DP=2648;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,55:75:99:1464,0,522:8,12,22,33
chr2	29285713	.	C	T	1499.12	PASS	AC=1;AF=0.681;AN=2;DP=2100;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,38:64:99:1035,0,677:12,14,17,21
chr2	29286072	.	G	A	3501.56	PASS	AC=1;AF=0.671;AN=2;DP=5561;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,66:148:99:1606,0,2032:34,48,28,38
chr2	29286193	.	T	C	1529.43	PASS	AC=1;AF=0.708;AN=2;DP=2610;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,32:63:99:923,0,897:13,18,16,16
chr2	29286364	.	C	T	427.83	PASS	AC=1;AF=0.575;AN=2;DP=1019;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant20-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,35:76:99:863,0,1088:15,26,18,17
chr2	29286509	.	T	C	227.36	PASS	AC=1;AF=0.568;AN=2;DP=647;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant20-variant21-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:530,0,347:6,6,7,11
chr2	29286670	.	T	C	238.29	PASS	AC=1;AF=0.568;AN=2;DP=781;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant20-variant21-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:435,0,553:12,7,9,9
chr2	29286905	.	G	T	436.71	PASS	AC=1;AF=0.568;AN=2;DP=1471;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant20-variant21-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,31:73:99:765,0,1134:19,23,18,13
chr2	29287192	.	G	A	438.34	PASS	AC=1;AF=0.575;AN=2;DP=843;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant20-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:588,0,590:12,13,14,10
chr2	29287227	.	T	C	1015.94	PASS	AC=1;AF=0.568;AN=2;DP=1163;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant20-variant21-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:984,0,1033:10,11,15,10
chr2	29287229	.	A	G	1015.94	PASS	AC=1;AF=0.604;AN=2;DP=1301;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant20-variant21-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:984,0,1033:10,12,15,10
chr2	29287708	.	C	T	493.19	PASS	AC=1;AF=0.568;AN=2;DP=1331;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant20-variant21-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,24:65:99:710,0,1071:20,21,12,12
chr2	29287926	.	C	CGCT	837.84	PASS	AC=1;AF=0.609;AN=2;DP=2539;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant20-variant21-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,51:98:99:2015,0,2031:25,22,24,27
chr2	29288109	.	A	G	115.56	PASS	AC=1;AF=0.609;AN=2;DP=445;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant20-variant21-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:378,0,365:0,10,0,10
chr2	29294629	.	C	T	1720.47	PASS	AC=1;AF=0.575;AN=2;DP=4356;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant20-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,124:223:99:2994,0,2304:48,51,56,68
chr2	29294754	.	G	C	1558.37	PASS	AC=1;AF=0.575;AN=2;DP=2897;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant20-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,72:149:99:2037,0,1998:39,38,33,39
chr2	29295016	.	A	G	2487.17	PASS	AC=1;AF=0.609;AN=2;DP=4511;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant20-variant21-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,93:190:99:2352,0,2468:47,50,46,47
chr2	29295676	.	G	A	1800.93	PASS	AC=1;AF=0.609;AN=2;DP=3872;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant20-variant21-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,76:145:99:1948,0,1639:33,36,34,42
chr2	29296870	.	C	T	3451.09	PASS	AC=1;AF=0.575;AN=2;DP=5637;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant20-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,136:282:99:3387,0,4127:60,86,61,75
chr2	29297068	.	C	T	1544.45	PASS	AC=1;AF=0.575;AN=2;DP=2448;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant20-variant23-variant25-variant26-variant27-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1180,0,1505:23,32,22,27
chr2	29320512	.	T	C	393.61	PASS	AC=1;AF=0.55;AN=2;DP=307;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant16-variant20-variant23-variant25-variant26-variant30-variant32-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:85:143,0,85:3,2,3,2
chr2	29320680	.	G	A	448.87	PASS	AC=1;AF=0.55;AN=2;DP=584;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant16-variant20-variant23-variant25-variant26-variant30-variant32-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,19:27:99:545,0,183:4,4,12,7
chr2	29355303	.	C	T	377.99	PASS	AC=1;AF=0.811;AN=2;DP=335;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:192,0,204:0,6,0,5
chr2	29356669	.	A	G	1651.49	PASS	AC=1;AF=0.683;AN=2;DP=1868;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,27:60:99:646,0,893:11,22,10,17
chr2	29366875	.	C	CACAG	615.91	PASS	AC=1;AF=0.702;AN=2;DP=2546;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:1103,0,1370:4,20,7,21
chr2	29375775	.	C	CT	71.94	PASS	AC=2;AF=0.523;AN=2;DP=466;MQ=60;set=variant-variant3-variant4-variant9-variant11-variant12-variant16-variant17-variant19-variant20-variant22-variant24-filterInvariant26-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:691,72,0:0,0,3,21
chr2	29383374	.	G	A	1067.04	PASS	AC=2;AF=0.907;AN=2;DP=1966;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1865,168,0:0,0,18,38
chr2	29390301	.	A	G	1006.66	PASS	AC=1;AF=0.526;AN=2;DP=1622;MQ=60;set=variant-variant3-variant9-variant11-variant12-variant16-variant17-variant19-variant20-variant22-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,38:76:99:918,0,934:21,17,20,18
chr2	29405743	.	G	A	1768.28	PASS	AC=1;AF=0.5;AN=2;DP=690;FractionInformativeReads=1;MQ=60;set=variant22-variant24-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:95,66:161:99:1929,0,2670:55,40,34,32
chr2	29415792	.	G	A	11423.7	PASS	AC=2;AF=1;AN=2;DP=13812;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,304:304:99:9306,912,0:0,0,171,133
chr2	29416572	.	T	C	3238.45	PASS	AC=2;AF=1;AN=2;DP=6578;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4122,383,0:0,0,71,57
chr2	29419591	.	G	T	1196.42	PASS	AC=2;AF=0.769;AN=2;DP=3038;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1880,176,0:0,0,40,19
chr2	29444095	.	C	T	2423.91	PASS	AC=2;AF=0.989;AN=2;DP=4515;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2301,227,0:0,0,31,45
chr2	29451790	.	T	C	566.19	PASS	AC=1;AF=0.5;AN=2;DP=947;set=filterInvariant2-filterInvariant5-variant7-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-variant19-filterInvariant22-variant23-variant24-variant27-filterInvariant28-filterInvariant31-variant33-variant34-variant35-variant38-variant40-filterInvariant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,6:38:61:61,0,4154:6,26,6,0
chr2	29451793	.	A	C	569.19	PASS	AC=1;AF=0.5;AN=2;DP=891;set=filterInvariant2-filterInvariant5-variant7-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-variant19-filterInvariant22-variant23-variant24-variant27-filterInvariant28-filterInvariant31-variant33-variant34-variant35-variant38-variant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:32,4:36:60:60,0,4154:6,26,4,0
chr2	29455267	.	A	G	2055.45	PASS	AC=1;AF=0.813;AN=2;DP=4057;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,57:107:99:1313,0,1189:30,20,32,25
chr2	29498210	.	A	G	3049.07	PASS	AC=2;AF=0.955;AN=2;DP=3516;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3262,270,0:0,0,60,30
chr2	29519622	.	C	T	1121.13	PASS	AC=2;AF=0.893;AN=2;DP=1976;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1699,152,0:0,0,39,12
chr2	29525341	.	A	G	643.53	PASS	AC=2;AF=0.932;AN=2;DP=842;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:765,51,0:0,0,15,2
chr2	29525345	.	T	C	103.61	PASS	AC=2;AF=0.841;AN=2;DP=878;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:814,57,0:0,0,15,4
chr2	29525654	.	C	T	409.51	PASS	AC=2;AF=0.798;AN=2;DP=1043;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:796,63,0:0,0,3,18
chr2	29541104	.	C	T	648.39	PASS	AC=1;AF=0.757;AN=2;DP=2323;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,23:65:99:547,0,1087:23,19,14,9
chr2	29543663	.	T	C	2769.5	PASS	AC=1;AF=0.864;AN=2;DP=4068;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:52,48:100:99:1244,0,1170:30,22,30,18
chr2	29754721	.	T	C	810.8	PASS	AC=2;AF=0.553;AN=2;DP=1633;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant12-variant14-variant17-variant18-variant19-variant23-variant25-variant28-variant29-variant32-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3089,284,0:0,0,60,35
chr2	29917940	.	C	G	552.83	PASS	AC=2;AF=0.779;AN=2;DP=2782;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1468,141,0:0,0,23,24
chr2	29940529	.	A	T	1364.21	PASS	AC=2;AF=0.779;AN=2;DP=4739;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3180,313,0:0,0,58,47
chr2	29940820	.	C	T	321.52	PASS	AC=2;AF=0.779;AN=2;DP=722;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:808,60,0:0,0,4,16
chr2	30143499	.	G	C	1534.43	PASS	AC=2;AF=0.955;AN=2;DP=3279;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2045,168,0:0,0,29,27
chr2	30371053	.	A	G	309.05	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.333;QD=12.36;ReadPosRankSum=0.897;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:337,0,350:4,9,3,9
chr2	30371358	.	T	C	426.35	PASS	AC=1;AF=0.762;AN=2;DP=760;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,17:26:99:403,0,166:4,5,8,9
chr2	30381505	.	T	C	4760.04	PASS	AC=1;AF=0.633;AN=2;DP=4774;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,77:153:99:1958,0,2282:43,33,38,39
chr2	30682360	.	G	A	835.6	PASS	AC=2;AF=0.802;AN=2;DP=1852;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1306,120,0:0,0,29,11
chr2	30748321	.	A	G	1097.67	PASS	AC=2;AF=0.798;AN=2;DP=2053;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1993,171,0:0,0,45,12
chr2	30775299	.	G	A	205.58	PASS	AC=2;AF=0.826;AN=2;DP=936;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:746,63,0:0,0,16,5
chr2	30791152	.	A	G	420.8	PASS	AC=2;AF=0.786;AN=2;DP=1158;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:86:1059,86,0:0,0,3,26
chr2	30828792	.	G	A	438.96	PASS	AC=2;AF=0.738;AN=2;DP=2436;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1700,167,0:0,0,37,19
chr2	30830148	.	C	T	786.9	PASS	AC=2;AF=0.667;AN=2;DP=688;FractionInformativeReads=1;set=variant3-variant6-variant7-variant8-variant11-variant12-variant16-variant17-variant19-variant21-variant22-variant24-variant26-variant28-variant31-variant33-variant35-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:951,72,0:0,0,22,2
chr2	30864326	.	A	G	6747.91	PASS	AC=2;AF=0.826;AN=2;DP=16125;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,367:367:99:11258,1097,0:0,0,173,194
chr2	30864753	.	CT	C	493.1	PASS	AC=2;AF=0.667;AN=2;DP=493;set=variant3-variant7-variant8-variant11-variant12-variant14-variant16-variant17-variant19-variant21-variant22-variant24-variant26-variant28-variant31-variant33-variant35-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:917,63,0:0,0,6,15
chr2	30864768	.	T	C	443.25	PASS	AC=2;AF=0.667;AN=2;DP=382;set=variant3-variant7-variant8-variant11-variant12-variant14-variant16-variant17-variant19-variant21-variant22-variant24-variant26-variant28-variant31-variant33-variant35-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:60:886,60,0:0,0,5,14
chr2	30864770	.	TTTTC	T	403.55	PASS	AC=2;AF=0.571;AN=2;DP=372;set=variant3-variant7-variant8-variant11-variant12-variant14-variant16-variant17-variant19-variant21-variant22-variant24-variant26-variant28-variant31-variant33-variant35-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:855,57,0:0,0,5,14
chr2	30864976	.	C	G	745.64	PASS	AC=2;AF=0.667;AN=2;DP=864;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant11-variant12-variant14-variant16-variant17-variant19-variant21-variant22-variant24-variant26-variant28-variant31-variant33-variant35-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:87:1273,87,0:0,0,21,6
chr2	30864980	.	A	G	534.68	PASS	AC=2;AF=0.81;AN=2;DP=1988;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1273,87,0:0,0,23,6
chr2	30865048	.	G	A	620.39	PASS	AC=2;AF=0.685;AN=2;DP=1579;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1571,159,0:0,0,27,26
chr2	30865266	.	CTT	C,CT	238.31	PASS	AC=2,0;AF=0.762,0.071;AN=2;DP=899;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:21:66:0,0,13,8
chr2	30865273	.	T	C	247.29	PASS	AC=2;AF=0.8;AN=2;DP=875;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:963,69,0:0,0,13,10
chr2	30976058	.	C	T	3408.78	PASS	AC=1;AF=0.625;AN=2;DP=3960;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,66:129:99:1609,0,1424:31,32,31,35
chr2	30977073	.	G	A	4284.08	PASS	AC=1;AF=0.895;AN=2;DP=4961;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,53:110:99:1215,0,1406:31,26,30,23
chr2	30980940	.	C	T	1517.15	PASS	AC=1;AF=0.813;AN=2;DP=2327;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,44:76:99:1121,0,960:21,11,28,16
chr2	30986853	.	A	G	566.19	PASS	AC=1;AF=0.5;AN=2;DP=365;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant9-variant16-variant29-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,22:59:99:594,0,1188:27,10,14,8
chr2	30986989	.	G	T	1958.13	PASS	AC=1;AF=0.92;AN=2;DP=5036;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:64,68:132:99:1917,0,1516:33,31,39,29
chr2	30993328	.	C	G	1055.82	PASS	AC=1;AF=0.5;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,49:103:99:1084,0,1557:20,34,22,27
chr2	30999023	.	AT	A	297.61	PASS	AC=1;AF=0.643;AN=2;DP=1132;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant27-variant28-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:474,0,255:3,9,5,14
chr2	31000370	.	G	C	491.45	PASS	AC=1;AF=0.531;AN=2;DP=589;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant12-variant13-variant15-variant21-variant23-variant24-variant26-variant27-variant31-variant33-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,20:34:99:757,0,446:11,3,18,2
chr2	31009977	.	G	C	1009.95	PASS	AC=2;AF=0.898;AN=2;DP=1298;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1101,81,0:0,0,21,6
chr2	31010212	.	C	T	1078.18	PASS	AC=1;AF=0.5;AN=2;DP=1678;MQ=60;set=variant12-variant21-variant23-variant24-variant26-variant29-variant31-variant34-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,58:119:99:1586,0,1601:23,38,20,38
chr2	31030024	.	C	T	106.77	PASS	AC=2;AF=0.8;AN=2;DP=414;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:335,27,0:0,0,8,1
chr2	31188957	.	C	T	452.06	PASS	AC=2;AF=0.977;AN=2;DP=1033;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1085,87,0:0,0,23,6
chr2	31189236	.	G	A	734.91	PASS	AC=1;AF=0.5;AN=2;DP=1039;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant10-variant18-variant23-variant27-variant28-variant32-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,35:76:99:949,0,1167:19,22,12,23
chr2	31189304	.	T	C	259.52	PASS	AC=1;AF=0.5;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant10-variant18-variant23-variant27-variant28-variant32-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,16:50:99:339,0,890:13,21,6,10
chr2	31189345	.	G	T	384.62	PASS	AC=1;AF=0.5;AN=2;DP=312;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant10-variant18-variant23-variant27-variant28-variant32-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,13:36:99:291,0,666:6,17,3,10
chr2	31189401	.	A	G	220.39	PASS	AC=1;AF=0.5;AN=2;DP=197;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant10-variant18-variant23-variant27-variant28-variant32-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:239,0,494:3,13,2,7
chr2	31189439	.	G	A	169.67	PASS	AC=1;AF=0.5;AN=2;DP=114;MQ=60;set=variant-variant3-variant10-variant18-variant23-variant27-variant28-variant32-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:141,0,260:0,8,0,4
chr2	31348335	.	ACC	A	1319.53	PASS	AC=2;AF=0.845;AN=2;DP=1463;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1110,78,0:0,0,8,18
chr2	31348390	.	A	G	583.95	PASS	AC=2;AF=0.714;AN=2;DP=413;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:518,36,0:0,0,1,11
chr2	31361399	.	CGACA	C	1996.74	PASS	AC=1;AF=0.75;AN=2;DP=5147;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,67:108:99:2660,0,2230:16,25,31,36
chr2	31397696	.	G	C	815.68	PASS	AC=1;AF=0.525;AN=2;DP=1520;MQ=60;set=variant4-variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,41:93:99:1045,0,1252:19,33,16,25
chr2	31397727	.	T	C	497.89	PASS	AC=1;AF=0.525;AN=2;DP=1089;MQ=60;set=variant4-variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:880,0,664:4,18,10,20
chr2	31399304	.	GAAT	G	784.5	PASS	AC=1;AF=0.5;AN=2;DP=78;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:822,0,781:13,8,11,11
chr2	31399358	.	T	G	575.8	PASS	AC=1;AF=0.525;AN=2;DP=1191;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:907,0,699:16,13,17,12
chr2	31399414	.	G	C	891.98	PASS	AC=1;AF=0.525;AN=2;DP=1506;MQ=60;set=variant4-variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,31:69:99:941,0,1112:23,15,19,12
chr2	31399659	.	T	C	819.6	PASS	AC=1;AF=0.522;AN=2;DP=1079;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:767,0,888:10,22,9,19
chr2	31399751	.	T	G	619.56	PASS	AC=1;AF=0.525;AN=2;DP=589;FractionInformativeReads=1;set=variant4-variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:472,0,674:13,5,8,6
chr2	31399988	.	C	T	1349.06	PASS	AC=1;AF=0.525;AN=2;DP=2201;MQ=60;set=variant4-variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,60:101:99:1440,0,1082:14,27,24,36
chr2	31400039	.	A	G	905.38	PASS	AC=1;AF=0.525;AN=2;DP=1078;MQ=60;set=variant4-variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,28:48:99:777,0,594:5,15,7,21
chr2	31400502	.	A	C	286.62	PASS	AC=1;AF=0.523;AN=2;DP=360;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:330,0,1244:15,1,8,1
chr2	31400510	.	G	A	364.58	PASS	AC=1;AF=0.526;AN=2;DP=348;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:330,0,1244:15,1,8,1
chr2	31400722	.	G	A	1824.53	PASS	AC=1;AF=0.526;AN=2;DP=3294;MQ=60;set=variant4-variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:109,70:179:99:1578,0,2717:53,56,31,39
chr2	31400867	.	T	C	295.38	PASS	AC=1;AF=0.526;AN=2;DP=610;MQ=60;set=variant4-variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:399,0,641:2,16,1,11
chr2	31401290	.	A	C	2950.69	PASS	AC=2;AF=1;AN=2;DP=4633;FS=0;MQ=60;MQRankSum=0.027;ReadPosRankSum=-0.605;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3040,293,0:0,0,56,42
chr2	31401499	.	G	A	340.39	PASS	AC=1;AF=0.526;AN=2;DP=631;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:476,0,549:7,15,5,13
chr2	31403947	.	G	A	289.71	PASS	AC=1;AF=0.528;AN=2;DP=456;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:316,0,491:5,13,2,10
chr2	31409115	.	T	C	341.27	PASS	AC=1;AF=0.528;AN=2;DP=389;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,9:28:99:234,0,493:13,6,7,2
chr2	31410653	.	C	T	1659.95	PASS	AC=1;AF=0.5;AN=2;DP=1934;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,62:118:99:1447,0,1341:34,22,33,29
chr2	31410708	.	C	T	4640.73	PASS	AC=2;AF=1;AN=2;DP=6174;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:4538,393,0:0,0,64,67
chr2	31410728	.	C	A	1572.24	PASS	AC=1;AF=0.5;AN=2;DP=2281;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,51:125:99:1229,0,1812:36,38,21,30
chr2	31411184	.	C	A	996.49	PASS	AC=1;AF=0.5;AN=2;DP=1509;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,33:92:99:708,0,1353:30,29,19,14
chr2	31411242	.	C	A	1066.55	PASS	AC=1;AF=0.5;AN=2;DP=1607;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,39:104:99:766,0,1620:28,37,21,18
chr2	31411310	.	C	T	586.15	PASS	AC=1;AF=0.5;AN=2;DP=894;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,34:65:99:764,0,707:12,19,14,20
chr2	31411365	.	G	A	219.24	PASS	AC=1;AF=0.5;AN=2;DP=403;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:425,0,282:1,9,5,11
chr2	31412096	.	T	C	135.83	PASS	AC=1;AF=0.5;AN=2;DP=316;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:362,0,329:9,2,10,0
chr2	31412443	.	T	C	701.84	PASS	AC=1;AF=0.5;AN=2;DP=866;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:816,0,655:12,10,14,11
chr2	31412646	.	T	C	748.29	PASS	AC=1;AF=0.5;AN=2;DP=1310;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,41:76:99:1143,0,799:13,22,11,30
chr2	31412670	.	C	T	656.42	PASS	AC=1;AF=0.5;AN=2;DP=1015;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,30:55:99:870,0,630:8,17,7,23
chr2	31414223	.	G	A	806.62	PASS	AC=1;AF=0.5;AN=2;DP=1004;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:578,0,586:10,16,8,14
chr2	31414807	.	C	G	1799.48	PASS	AC=2;AF=0.955;AN=2;DP=4264;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2355,221,0:0,0,36,38
chr2	31414851	.	T	C	1749.01	PASS	AC=1;AF=0.5;AN=2;DP=401;MQ=60;set=variant22-variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:915,0,1036:18,23,17,20
chr2	31415054	.	G	A	501.37	PASS	AC=1;AF=0.5;AN=2;DP=237;FractionInformativeReads=1;MQ=60;set=variant22-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,26:53:99:577,0,633:10,17,12,14
chr2	31415967	.	T	C	738.54	PASS	AC=1;AF=0.636;AN=2;DP=789;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:216,0,344:10,2,6,0
chr2	31416213	.	T	C	2152.47	PASS	AC=1;AF=0.636;AN=2;DP=4245;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,68:133:99:1705,0,1539:29,36,26,42
chr2	31416305	.	C	T	511.77	PASS	AC=1;AF=0.641;AN=2;DP=1014;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:675,0,1757:3,17,2,16
chr2	31416309	.	A	G	511.77	PASS	AC=1;AF=0.636;AN=2;DP=958;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:657,0,1727:2,16,1,16
chr2	31416317	.	C	G	376.77	PASS	AC=1;AF=0.636;AN=2;DP=802;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:627,0,1540:2,12,0,15
chr2	31417290	.	T	C	705.99	PASS	AC=1;AF=0.5;AN=2;DP=167;FractionInformativeReads=1;MQ=60;set=variant30-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,18:57:99:338,0,1045:18,21,8,10
chr2	31420153	.	G	C	1118.92	PASS	AC=1;AF=0.5;AN=2;DP=197;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,41:104:99:1147,0,1685:38,25,26,15
chr2	31420485	.	T	C	315.48	PASS	AC=2;AF=1;AN=2;DP=710;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:418,36,0:0,0,4,8
chr2	31424885	.	C	T	2042.16	PASS	AC=1;AF=0.645;AN=2;DP=2733;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,64:107:99:1642,0,1051:16,27,29,35
chr2	31426096	.	T	G	775.29	PASS	AC=1;AF=0.5;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant11-variant22-variant27-variant29-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,22:54:99:827,0,1889:11,21,9,13
chr2	31426098	.	C	T	775.29	PASS	AC=1;AF=0.5;AN=2;DP=314;FractionInformativeReads=1;MQ=60;set=variant11-variant22-variant27-variant29-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:827,0,1889:10,21,9,13
chr2	31428541	.	A	G	267.07	PASS	AC=1;AF=0.65;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant30-variant32-variant33-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:187,0,157:1,4,0,5
chr2	31440329	.	G	A	859.09	PASS	AC=1;AF=0.655;AN=2;DP=1217;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant32-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:398,0,427:9,9,9,7
chr2	31440370	.	C	T	862.61	PASS	AC=1;AF=0.655;AN=2;DP=1083;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant32-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:503,0,494:9,9,10,10
chr2	31457154	.	GGGGACCCCGGCTT	G	687.8	PASS	AC=2;AF=0.75;AN=2;DP=1012;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:58:856,58,0:0,0,10,9
chr2	31457981	.	T	C	520.43	PASS	AC=2;AF=0.789;AN=2;DP=428;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:365,33,0:0,0,3,8
chr2	31467351	.	T	A	2152.78	PASS	AC=1;AF=0.705;AN=2;DP=3578;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,50:99:99:1006,0,1220:24,25,22,28
chr2	31472179	.	T	C	1103.11	PASS	AC=1;AF=0.5;AN=2;DP=80;FS=0.85;FractionInformativeReads=1;MQ=60;MQRankSum=0.256;QD=13.79;ReadPosRankSum=2.423;SOR=0.883;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,44:80:99:1131,0,951:18,18,24,20
chr2	31483890	.	T	C	677.99	PASS	AC=1;AF=0.808;AN=2;DP=1739;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:666,0,732:2,19,2,18
chr2	31484334	.	G	A	1367.28	PASS	AC=2;AF=0.878;AN=2;DP=2231;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1416,126,0:0,0,29,13
chr2	31488965	.	C	T	329.76	PASS	AC=2;AF=0.878;AN=2;DP=974;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1031,87,0:0,0,21,8
chr2	31489627	.	TACACACACACACAC	TACACACACACACACAC,TACACACACACACACACAC,TACACACACACAC,TACACACACACACACACACAC,TACACACACAC,TACACACAC,T	963.84	PASS	AC=0,1,1,0,0,0,0;AF=0.051,0.103,0.231,0.077,0.013,0.064,0.013;AN=2;DP=2865;set=variant-variant2-variant3-filterInvariant4-variant5-variant7-variant8-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-variant28-variant29-variant30-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-variant39-filterInvariant40-variant41-variant43	GT:DP:GQ:SB	3/2:46:99:0,2,14,30
chr2	31489727	.	T	C	2533.73	PASS	AC=2;AF=0.89;AN=2;DP=3570;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2290,204,0:0,0,36,32
chr2	31489826	.	G	C	1439.51	PASS	AC=1;AF=0.5;AN=2;DP=729;MQ=60;set=variant9-variant10-variant15-variant29-variant34-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,63:113:99:1487,0,1149:24,26,31,32
chr2	31490716	.	C	G	1476.62	PASS	AC=2;AF=0.854;AN=2;DP=3090;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2399,228,0:0,0,40,36
chr2	31491137	.	A	T	1475.23	PASS	AC=1;AF=0.5;AN=2;DP=129;FS=3.177;FractionInformativeReads=1;MQ=60;MQRankSum=-1.34;QD=11.44;ReadPosRankSum=-3.368;SOR=0.784;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,59:129:99:1503,0,1878:33,37,32,27
chr2	31491372	.	A	G	783.64	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=5.559;FractionInformativeReads=1;MQ=60;MQRankSum=1.706;QD=14.79;ReadPosRankSum=0.956;SOR=1.46;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:812,0,590:12,12,10,19
chr2	31491629	.	A	G	389.94	PASS	AC=1;AF=0.5;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant-variant10-variant15-variant18-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:635,0,620:12,12,14,8
chr2	31491783	.	A	G	899.63	PASS	AC=1;AF=0.5;AN=2;DP=253;MQ=60;set=variant19-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:50,31:81:99:795,0,1345:26,24,18,13
chr2	31491893	.	T	C	1133.55	PASS	AC=1;AF=0.5;AN=2;DP=96;FS=2.677;FractionInformativeReads=1;MQ=60;MQRankSum=-1.984;QD=11.81;ReadPosRankSum=0.766;SOR=0.594;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,46:96:99:1162,0,1354:22,28,24,22
chr2	31557308	.	G	A	1864.72	PASS	AC=2;AF=0.638;AN=2;DP=2039;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1831,171,0:0,0,27,30
chr2	31558306	.	T	C	8612.99	PASS	AC=2;AF=0.643;AN=2;DP=7706;MQ=60;set=variant2-variant4-variant5-variant7-variant11-variant12-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,258:258:99:8016,772,0:0,0,124,134
chr2	31558950	.	T	C	568.73	PASS	AC=1;AF=0.5;AN=2;DP=115;FractionInformativeReads=1;MQ=60;set=variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,32:53:99:873,0,534:6,15,12,20
chr2	31567743	.	T	C	2923.84	PASS	AC=2;AF=0.977;AN=2;DP=5168;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2567,246,0:0,0,34,48
chr2	31570864	.	C	T	68.49	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.58;QD=6.85;ReadPosRankSum=-1.58;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:97:97,0,197:5,2,3,0
chr2	31573234	.	CTTTTT	CTTT,C,CTT,CT,CTTTTTTT	62.43	PASS	AC=1,0,0,0,0;AF=0.288,0.019,0.212,0.058,0.019;AN=2;DP=676;set=variant-variant3-variant4-variant5-variant9-variant10-variant16-variant17-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:6:0:0,1,0,5
chr2	31606985	.	AGTGTGT	AGTGTGTGTGT,AGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGT,A,AGTGTGTGTGTGT,AGTGTGTGT	52.37	PASS	AC=0,0,2,0,0,0,0;AF=0.067,0.3,0.383,0.05,0.017,0.117,0.017;AN=2;DP=353;FS=0;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	3/3:11:32:0,0,3,8
chr2	31609369	.	G	A	1170.19	PASS	AC=1;AF=0.5;AN=2;DP=190;MQ=60;set=variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,44:86:99:1196,0,1061:23,19,27,17
chr2	31609448	.	A	C	2980.15	PASS	AC=2;AF=1;AN=2;DP=4388;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3471,351,0:0,0,54,63
chr2	31611029	.	G	A	342.61	PASS	AC=1;AF=0.65;AN=2;DP=868;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:486,0,340:10,2,10,4
chr2	31611367	.	T	C	412.53	PASS	AC=2;AF=0.73;AN=2;DP=706;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:534,42,0:0,0,1,13
chr2	31626094	.	C	A	174.55	PASS	AC=1;AF=0.5;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant14-variant19-variant25-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:297,0,208:0,7,3,8
chr2	31628746	.	G	A	776.98	PASS	AC=1;AF=0.5;AN=2;DP=766;FractionInformativeReads=1;MQ=60;set=variant14-variant19-variant25-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:61,61:122:99:1399,0,1593:27,34,31,30
chr2	31805619	.	T	C	1068.92	PASS	AC=2;AF=1;AN=2;DP=2831;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2325,216,0:0,0,45,27
chr2	31805675	.	A	G	2934.18	PASS	AC=1;AF=0.77;AN=2;DP=4440;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,47:116:99:1188,0,1802:38,31,29,18
chr2	31805706	.	G	C	4022.12	PASS	AC=1;AF=0.816;AN=2;DP=5909;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,58:143:99:1389,0,2214:45,40,35,23
chr2	31805880	.	A	AG	6101.78	PASS	AC=2;AF=1;AN=2;DP=9466;FS=0;MQ=60;MQRankSum=-0.767;ReadPosRankSum=-1.498;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,179:179:99:6421,545,0:0,0,87,92
chr2	31806031	.	C	G	988.28	PASS	AC=1;AF=0.77;AN=2;DP=1564;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,21:34:99:700,0,437:0,13,6,15
chr2	32312700	.	T	C	467.86	PASS	AC=1;AF=0.65;AN=2;DP=737;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:278,0,405:3,10,1,8
chr2	32312716	.	C	CTATT	205.28	PASS	AC=1;AF=0.5;AN=2;DP=62;MQ=60;set=variant33-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:133,0,198:1,4,1,3
chr2	32324072	.	T	C	160.43	PASS	AC=1;AF=0.65;AN=2;DP=411;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:309,0,140:0,4,1,8
chr2	32340026	.	AT	ATTT,ATT,A	38.12	PASS	AC=0,2,0;AF=0.167,0.5,0.083;AN=2;DP=52;FS=0;MQ=60;set=variant12-variant19-variant21-variant29-variant41-variant42	GT:DP:GQ:SB	2/2:4:12:0,0,1,3
chr2	32361482	.	T	TC	53.21	PASS	AC=2;AF=0.714;AN=2;DP=164;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant29-variant31-variant33-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:15:198,15,0:0,0,4,0
chr2	32362079	.	G	GTATA	910.82	PASS	AC=1;AF=0.654;AN=2;DP=1427;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,26:43:99:1021,0,900:9,8,11,15
chr2	32369901	.	T	C	415.31	PASS	AC=2;AF=0.953;AN=2;DP=526;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:575,42,0:0,0,13,1
chr2	32372414	.	GTTTTT	GTTTTTTT,GTTTTTTTTT,GTT,GTTTT,GTTT,GTTTTTT,GTTTTTTTT,G	108.19	PASS	AC=1,0,0,0,0,0,0,0;AF=0.167,0.024,0.048,0.238,0.048,0.048,0.024,0.024;AN=2;DP=589;set=variant2-variant4-variant8-variant11-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-filterInvariant28-variant32-variant34-filterInvariant36-variant37-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:7:48:0,3,0,4
chr2	32381109	.	GT	G	66.42	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=2.336;FractionInformativeReads=0.895;MQ=60;MQRankSum=-1.055;QD=3.5;ReadPosRankSum=-0.452;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:104,0,247:2,9,2,4
chr2	32381110	.	T	G	361.44	PASS	AC=1;AF=0.639;AN=2;DP=268;FractionInformativeReads=1;set=variant2-variant4-variant6-variant9-variant11-variant14-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant28-variant29-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,5:19:82:82,0,432:4,10,1,4
chr2	32381527	.	A	G	2089.32	PASS	AC=1;AF=0.5;AN=2;DP=454;MQ=60;set=variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,70:143:99:2418,0,3666:39,34,35,35
chr2	32381528	.	A	G	2089.35	PASS	AC=1;AF=0.5;AN=2;DP=456;MQ=60;set=variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,70:144:99:2418,0,3666:40,34,35,35
chr2	32381727	.	A	AAGG	9413.37	PASS	AC=2;AF=0.943;AN=2;DP=8118;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:7596,508,0:0,0,92,76
chr2	32381829	.	G	A	2681.5	PASS	AC=1;AF=0.654;AN=2;DP=4944;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:102,88:190:99:2288,0,2759:46,56,33,55
chr2	32400532	.	T	C	330.53	PASS	AC=1;AF=0.5;AN=2;DP=66;FractionInformativeReads=1;MQ=60;set=variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:67:123,0,67:0,2,2,3
chr2	32418808	.	T	A	1587.3	PASS	AC=1;AF=0.816;AN=2;DP=1663;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:734,0,648:16,6,17,9
chr2	32422366	.	G	GT	308.52	PASS	AC=1;AF=0.5;AN=2;DP=123;MQ=60;set=variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:215,0,331:11,3,6,4
chr2	32434701	.	A	G	820.42	PASS	AC=1;AF=0.803;AN=2;DP=612;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:146,0,206:1,6,1,4
chr2	32447868	.	A	G	1964.58	PASS	AC=1;AF=0.722;AN=2;DP=3805;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,65:118:99:2098,0,1580:15,38,18,47
chr2	32449880	.	A	T	151.11	PASS	AC=1;AF=0.5;AN=2;DP=59;MQ=60;set=variant19-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:17,5:22:66:66,0,439:7,10,1,4
chr2	32460348	.	A	G	37.69	PASS	AC=1;AF=0.735;AN=2;DP=382;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:146,0,193:5,0,2,2
chr2	32461493	.	T	TC	227.83	PASS	AC=2;AF=0.964;AN=2;DP=394;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:399,30,0:0,0,1,9
chr2	32466029	.	A	G	1031.5	PASS	AC=1;AF=0.722;AN=2;DP=2140;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,19:53:99:494,0,958:21,13,13,6
chr2	32474601	.	C	G	505.71	PASS	AC=1;AF=0.5;AN=2;DP=41;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:251,0,401:8,3,7,1
chr2	32475109	.	G	A	2107.34	PASS	AC=1;AF=0.714;AN=2;DP=5833;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,98:190:99:2390,0,2503:44,48,49,49
chr2	32476390	.	T	G	1806.37	PASS	AC=1;AF=0.714;AN=2;DP=5821;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,78:162:99:1901,0,2207:43,41,33,45
chr2	32481793	.	AT	A	2769.05	PASS	AC=1;AF=0.714;AN=2;DP=4079;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,60:117:99:2337,0,3311:31,26,33,27
chr2	32481795	.	T	A	2778.11	PASS	AC=1;AF=0.714;AN=2;DP=4101;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,60:117:99:2337,0,3311:31,26,33,27
chr2	32489851	.	T	C	598.07	PASS	AC=1;AF=0.77;AN=2;DP=1036;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:211,0,430:7,8,4,5
chr2	32531207	.	CTT	C	231.95	PASS	AC=1;AF=0.548;AN=2;DP=244;MQ=60;set=variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant17-variant19-variant26-variant27-variant28-variant31-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:69:160,0,69:0,2,2,2
chr2	32534750	.	CTTTTTTTTTTTTTTT	CTTTTTTTTTTTT,C,CTTTTTTTTTTT,CTTTTTTTTTTTTTT,CTTTTTTTTTTTTT	127.49	PASS	AC=0,1,0,0,0;AF=0.032,0.403,0.032,0.032,0.065;AN=2;DP=1246;set=variant2-variant5-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant24-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:24:99:3,7,4,10
chr2	32582111	.	C	T	1362.66	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=0.79;FractionInformativeReads=1;MQ=60;MQRankSum=-1.075;QD=13.9;ReadPosRankSum=-0.125;SOR=0.85;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,54:98:99:1391,0,1152:27,17,35,19
chr2	32654117	.	A	G	117.34	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.219;QD=13.04;ReadPosRankSum=0.876;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:146,0,148:4,0,4,1
chr2	32667058	.	C	A	286.77	PASS	AC=2;AF=1;AN=2;DP=563;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,5,1
chr2	32667061	.	T	A	323.52	PASS	AC=2;AF=1;AN=2;DP=604;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,5,1
chr2	32667182	.	G	C	2669.71	PASS	AC=2;AF=1;AN=2;DP=3244;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1957,201,0:0,0,38,29
chr2	32693883	.	G	A	458.4	PASS	AC=1;AF=0.5;AN=2;DP=93;FractionInformativeReads=1;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,20:54:99:438,0,918:12,22,7,13
chr2	32706579	.	T	A	792.48	PASS	AC=2;AF=1;AN=2;DP=922;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:655,60,0:0,0,7,13
chr2	32710707	.	T	C	1404.29	PASS	AC=1;AF=0.5;AN=2;DP=277;MQ=60;set=variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,68:142:99:1846,0,1889:33,41,33,35
chr2	32712875	.	A	C	2806.33	PASS	AC=2;AF=1;AN=2;DP=3347;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,77:78:99:2602,196,0:1,0,22,55
chr2	32713706	.	A	T	594.62	PASS	AC=1;AF=0.667;AN=2;DP=1903;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,20:51:99:403,0,759:14,17,10,10
chr2	32749880	.	C	T	376.77	PASS	AC=2;AF=1;AN=2;DP=406;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:540,36,0:0,0,9,3
chr2	32749890	.	C	T	511.77	PASS	AC=2;AF=1;AN=2;DP=495;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:45:675,45,0:0,0,11,3
chr2	32749893	.	A	T	511.77	PASS	AC=2;AF=1;AN=2;DP=524;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:675,45,0:0,0,12,3
chr2	32749903	.	T	C	661.7	PASS	AC=2;AF=1;AN=2;DP=649;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:904,63,0:0,0,17,4
chr2	32757201	.	C	CGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGT,CGTGTGTGTGTGT,CGTGTGTGTGT,CGTGTGTGT,CGTGTGTGTGTGTGTGTGT,CGTGTGT	367.38	PASS	AC=0,0,2,0,0,0,0;AF=0.162,0.122,0.27,0.203,0.054,0.108,0.014;AN=2;DP=401;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	3/3:7:20:0,0,5,2
chr2	32768238	.	G	A	154.59	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=9.971;FractionInformativeReads=1;MQ=60;MQRankSum=-1.122;QD=9.09;ReadPosRankSum=0.927;SOR=0.472;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:183,0,335:9,1,3,4
chr2	32822957	.	G	A	364.01	PASS	AC=1;AF=0.565;AN=2;DP=1441;MQ=60;set=variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant17-variant19-variant26-variant27-variant28-variant30-variant31-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:840,0,789:11,18,13,18
chr2	32843294	.	TA	T	359.47	PASS	AC=1;AF=0.52;AN=2;DP=2196;set=variant2-variant3-variant5-variant7-variant9-variant11-variant12-variant13-filterInvariant16-variant17-variant19-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,44:82:99:884,0,696:19,19,24,20
chr2	32843295	.	A	T,ATT	1038.34	PASS	AC=1,0;AF=0.5,0.05;AN=2;DP=877;MQ=60;set=variant25-variant29-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:82:99:27,23,16,16
chr2	32855615	.	A	G	8927.36	PASS	AC=2;AF=0.989;AN=2;DP=10208;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,208:208:99:6360,623,0:0,0,112,96
chr2	32860415	.	C	T	1772.7	PASS	AC=2;AF=0.955;AN=2;DP=2732;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1260,129,0:0,0,20,23
chr2	32875084	.	T	C	158.44	PASS	AC=1;AF=0.5;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant-variant14-variant16-variant18-variant20-variant23-variant30-variant33-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:151,0,195:5,0,4,1
chr2	32875420	.	CTTTTTT	C,CTTT,CTTTTTTT,CTTTT,CTT,CTTTTT	80.17	PASS	AC=0,1,0,0,0,0;AF=0.05,0.175,0.025,0.175,0.1,0.05;AN=2;DP=252;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant11-variant12-variant14-variant18-variant19-variant23-variant26-variant28-variant32-variant35-variant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:5:6:0,2,0,3
chr2	32961745	.	T	A	4388.88	PASS	AC=2;AF=0.989;AN=2;DP=5620;MQ=60;MQRankSum=-0.479;ReadPosRankSum=0.241;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3676,341,0:0,0,78,36
chr2	32983565	.	G	A	1599.37	PASS	AC=1;AF=0.5;AN=2;DP=146;FS=2.098;FractionInformativeReads=1;MQ=60;MQRankSum=-0.415;QD=10.95;ReadPosRankSum=-1.166;SOR=0.578;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:83,63:146:99:1628,0,2266:45,38,31,32
chr2	33036324	.	G	A	339.87	PASS	AC=1;AF=0.545;AN=2;DP=874;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:354,0,259:1,7,0,9
chr2	33127080	.	T	C	1700.39	PASS	AC=1;AF=0.5;AN=2;DP=1653;set=variant2-variant6-variant7-variant8-variant10-variant17-variant27-variant28-variant29-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,55:119:99:1249,0,1601:31,33,30,25
chr2	33127244	.	C	CT	3077.95	PASS	AC=1;AF=0.553;AN=2;DP=3214;MQ=60;set=variant2-variant3-variant8-variant10-variant14-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,96:162:99:3316,0,2178:34,32,46,50
chr2	33150389	.	C	T	1493.41	PASS	AC=2;AF=0.763;AN=2;DP=4514;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3117,320,0:0,0,62,45
chr2	33150678	.	C	T	117.03	PASS	AC=2;AF=0.629;AN=2;DP=2055;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant12-variant17-variant18-variant19-variant21-variant23-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1732,150,0:0,0,17,33
chr2	33150720	.	A	G	63.43	PASS	AC=2;AF=0.763;AN=2;DP=1636;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:848,81,0:0,0,10,17
chr2	33172136	.	C	G	387.02	PASS	AC=2;AF=0.588;AN=2;DP=383;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant12-variant13-variant17-variant18-variant19-filterInvariant23-variant29-variant31-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:550,45,0:0,0,10,5
chr2	33172358	.	C	A	308.97	PASS	AC=2;AF=0.588;AN=2;DP=460;MQ=60;set=variant5-variant6-variant7-variant12-variant13-variant17-variant18-variant19-variant23-variant29-variant31-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:621,57,0:0,0,7,12
chr2	33173552	.	C	T	112.44	PASS	AC=2;AF=0.607;AN=2;DP=153;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant12-variant17-variant19-variant23-variant29-variant31-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:319,24,0:0,0,7,1
chr2	33173703	.	G	A	864.15	PASS	AC=2;AF=0.594;AN=2;DP=1074;MQ=60;set=variant5-variant6-variant7-variant12-variant17-variant19-variant23-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2010,200,0:0,0,36,31
chr2	33392911	.	G	A	759.09	PASS	AC=1;AF=0.722;AN=2;DP=3937;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,35:92:99:918,0,1505:33,24,19,16
chr2	33413949	.	G	A	608.62	PASS	AC=1;AF=0.711;AN=2;DP=2109;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,36:64:99:1051,0,747:9,19,10,26
chr2	33414009	.	T	A	416.68	PASS	AC=2;AF=0.942;AN=2;DP=946;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:678,75,0:0,0,6,19
chr2	33442549	.	G	A	2445.03	PASS	AC=1;AF=0.711;AN=2;DP=2501;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:647,0,809:18,10,16,13
chr2	33585796	.	T	C	5874.98	PASS	AC=2;AF=1;AN=2;DP=11198;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,226:226:99:6645,675,0:0,0,109,117
chr2	33586464	.	C	CT,CTT	375.13	PASS	AC=1,0;AF=0.557,0.023;AN=2;DP=1732;set=Intersection	GT:DP:GQ:SB	0/1:33:53:4,3,16,10
chr2	33614187	.	C	T	1206.71	PASS	AC=2;AF=0.703;AN=2;DP=1551;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1305,122,0:0,0,31,10
chr2	33622448	.	T	C	636.13	PASS	AC=2;AF=0.629;AN=2;DP=1675;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1910,159,0:0,0,10,43
chr2	33622475	.	T	C	376.56	PASS	AC=2;AF=0.63;AN=2;DP=730;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant29-variant30-variant32-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1326,99,0:0,0,3,30
chr2	33623288	.	T	C	31.43	PASS	AC=2;AF=0.708;AN=2;DP=799;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:766,54,0:0,0,17,1
chr2	33623306	.	C	T	218.6	PASS	AC=2;AF=0.655;AN=2;DP=878;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant29-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:907,69,0:0,0,19,4
chr2	33623387	.	A	G	1261.16	PASS	AC=2;AF=0.775;AN=2;DP=3885;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3645,244,0:0,0,47,34
chr2	33623388	.	T	C	1261.16	PASS	AC=2;AF=0.775;AN=2;DP=3924;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3645,244,0:0,0,47,34
chr2	33623720	.	A	G	1958.42	PASS	AC=2;AF=0.604;AN=2;DP=3622;MQ=60;set=variant2-variant3-variant4-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant29-variant30-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,140:140:99:6321,427,0:0,0,86,54
chr2	33623734	.	A	G	2200.24	PASS	AC=2;AF=0.775;AN=2;DP=6731;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:6870,481,0:0,0,96,61
chr2	33643740	.	T	G	275.02	PASS	AC=1;AF=0.559;AN=2;DP=1825;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant34-variant35-variant36-variant37-filterInvariant38-filterInvariant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,22:30:99:412,0,102:3,5,5,17
chr2	33701410	.	C	T	427.39	PASS	AC=2;AF=0.68;AN=2;DP=682;MQ=60;set=variant-variant2-variant4-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant21-variant25-variant26-variant27-variant28-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:634,66,0:0,0,14,8
chr2	33701632	.	C	T	701.22	PASS	AC=1;AF=0.5;AN=2;DP=427;MQ=60;set=variant-variant4-variant9-variant13-variant15-variant27-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,13:45:99:331,0,836:18,14,5,8
chr2	33701825	.	CGTGTGTGTGTGTGTGT	CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGCGTGTGTGTGTGTGTGTGTGT,CGTGT,CGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGT,CGTGCGTGTGTGTGTGTGTGTGTGTGT,CGTGCGTGTGTGTGTGTGTGTGT,CGTGTGT,CGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGTGTGTGT,CGTGTGTGTGTGTGTGTGTGTGTGT,C,CGTGTGTGTGTGT	52.73	PASS	AC=0,0,0,1,0,0,0,0,0,1,0,0,0,0;AF=0.043,0.261,0.087,0.043,0.043,0.13,0.043,0.087,0.022,0.043,0.043,0.022,0.022,0.022;AN=2;DP=150;FS=0;set=variant4-variant5-variant6-variant7-variant8-variant10-variant20-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/10:7:99:0,0,3,4
chr2	33736857	.	G	A	4239.47	PASS	AC=1;AF=0.943;AN=2;DP=10858;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:115,100:215:99:2436,0,2759:52,63,42,58
chr2	33744958	.	C	T	137.2	PASS	AC=1;AF=0.692;AN=2;DP=1445;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:345,0,361:10,5,9,8
chr2	33745208	.	T	C	903.59	PASS	AC=1;AF=0.639;AN=2;DP=2771;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,28:59:99:663,0,779:15,16,12,16
chr2	33745336	.	T	C	401.26	PASS	AC=1;AF=0.779;AN=2;DP=769;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:260,0,524:7,10,5,3
chr2	33745402	.	A	G	517.45	PASS	AC=1;AF=0.6;AN=2;DP=795;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:438,0,528:8,8,11,4
chr2	33764286	.	T	C	1101.21	PASS	AC=1;AF=0.613;AN=2;DP=2809;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,35:77:99:777,0,961:21,21,18,17
chr2	33787976	.	CCTAA	C	8913.87	PASS	AC=1;AF=0.955;AN=2;DP=7956;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:82,71:153:99:2726,0,3744:47,35,37,34
chr2	33788060	.	CTT	C	12404.8	PASS	AC=1;AF=0.779;AN=2;DP=10433;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,100:220:99:3613,0,4416:60,60,47,53
chr2	33788156	.	C	T	2939.85	PASS	AC=1;AF=0.523;AN=2;DP=4101;MQ=60;set=variant-variant4-variant7-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant23-variant25-variant27-variant28-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,71:162:99:1922,0,2644:34,57,25,46
chr2	33789068	.	C	G	506.61	PASS	AC=1;AF=0.591;AN=2;DP=1071;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant16-variant17-variant18-variant23-variant27-variant28-variant29-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:510,0,619:7,17,7,13
chr2	33789534	.	A	G,AAT	5663.48	PASS	AC=1,0;AF=0.55,0.075;AN=2;DP=3079;set=variant5-variant7-variant8-variant10-variant16-variant17-variant18-variant23-variant27-variant28-variant29-variant33-variant35-variant37-variant39-variant40-variant41-variant2-variant42-variant43	GT:DP:GQ:SB	0/1:143:99:36,39,37,31
chr2	33809294	.	A	G	7915.31	PASS	AC=1;AF=0.81;AN=2;DP=10215;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,105:228:99:2834,0,3366:55,68,42,63
chr2	33809471	.	C	G	7128.92	PASS	AC=1;AF=0.583;AN=2;DP=1485;FractionInformativeReads=1;MQ=60;set=variant18-variant23-variant27-variant28-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:118,105:223:99:2975,0,3383:68,50,56,49
chr2	33952022	.	C	A	72.28	PASS	AC=2;AF=0.8;AN=2;DP=560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:598,48,0:0,0,13,3
chr2	33952055	.	C	G	121.69	PASS	AC=1;AF=0.7;AN=2;DP=876;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:337,0,465:12,2,9,1
chr2	33952413	.	T	C	2220.97	PASS	AC=2;AF=0.779;AN=2;DP=9472;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,195:195:99:6081,582,0:0,0,102,93
chr2	33952456	.	C	G	5937.4	PASS	AC=2;AF=1;AN=2;DP=10894;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,227:227:99:7270,681,0:0,0,120,107
chr2	35696519	.	G	A	688.08	PASS	AC=1;AF=0.5;AN=2;DP=759;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant11-variant13-variant16-variant21-variant22-variant23-variant30-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:598,0,768:19,7,15,8
chr2	35696612	.	C	T	1645.5	PASS	AC=2;AF=1;AN=2;DP=3045;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1838,200,0:0,0,33,34
chr2	36583342	.	T	TGCG	374.06	PASS	AC=1;AF=0.545;AN=2;DP=206;MQ=60;set=variant4-variant11-variant16-variant19-variant25-variant29-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:509,0,273:5,2,8,5
chr2	36605304	.	G	A	1297.1	PASS	AC=2;AF=0.655;AN=2;DP=1817;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant21-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2131,198,0:0,0,38,28
chr2	36605585	.	A	G	3455.52	PASS	AC=2;AF=0.769;AN=2;DP=3660;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3128,281,0:0,0,59,35
chr2	36670011	.	T	C	250.65	PASS	AC=1;AF=0.643;AN=2;DP=233;MQ=60;set=variant-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant17-variant19-variant20-variant25-variant27-variant29-variant31-variant32-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:181,0,242:1,6,0,5
chr2	36704129	.	T	A	1323.1	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=6.386;FractionInformativeReads=1;MQ=60;MQRankSum=-0.687;QD=13.36;ReadPosRankSum=2.56;SOR=0.954;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,55:99:99:1351,0,1089:20,24,32,23
chr2	36739553	.	T	C	508.61	PASS	AC=2;AF=0.857;AN=2;DP=1684;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1208,102,0:0,0,10,24
chr2	36740643	.	C	G	580.65	PASS	AC=2;AF=0.586;AN=2;DP=1037;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant30-variant32-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1101,105,0:0,0,22,13
chr2	36756288	.	T	C	996.81	PASS	AC=2;AF=0.849;AN=2;DP=4035;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2652,269,0:0,0,46,44
chr2	36775315	.	C	G	449.09	PASS	AC=2;AF=0.763;AN=2;DP=1348;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:772,77,0:0,0,15,11
chr2	36775410	.	CTT	CT,CTTT,CTTTTT,CTTTT,C,CTTTTTT	230.62	PASS	AC=0,1,0,0,0,0;AF=0.227,0.182,0.015,0.091,0.03,0.015;AN=2;DP=2185;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant12-variant13-filterInvariant14-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant23-variant24-variant25-variant26-variant27-filterInvariant29-variant33-variant34-filterInvariant35-variant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/2:45:99:6,6,18,15
chr2	36776271	.	C	G	514.75	PASS	AC=2;AF=0.58;AN=2;DP=946;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant34-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:987,87,0:0,0,21,8
chr2	36777184	.	ATGTGTGTGTGTG	ATGTGTGTGTG,A,ATGTGTGTGTGTGTG	117.7	PASS	AC=0,1,0;AF=0.333,0.056,0.111;AN=2;DP=1138;set=variant-variant2-filterInvariant3-variant5-variant8-variant9-variant13-filterInvariant15-filterInvariant21-variant27-variant28-variant29-variant33-filterInvariant35-variant37-variant41-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:55:99:17,12,18,8
chr2	36777377	.	ATT	AT,A	2564.51	PASS	AC=1,0;AF=0.432,0.114;AN=2;DP=14734;set=Intersection	GT:DP:GQ:SB	0/1:243:99:63,51,60,69
chr2	36777825	.	G	A	685.95	PASS	AC=2;AF=0.591;AN=2;DP=1663;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:1981,203,0:0,0,38,30
chr2	36779144	.	T	G	738.03	PASS	AC=2;AF=0.615;AN=2;DP=1590;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant26-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2184,201,0:0,0,44,23
chr2	36779606	.	T	TTTAAA	1867.77	PASS	AC=2;AF=0.614;AN=2;DP=2049;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:3313,225,0:0,0,42,25
chr2	36779655	.	A	AACTT	2536.3	PASS	AC=2;AF=0.614;AN=2;DP=3852;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:6748,451,0:0,0,101,47
chr2	36781401	.	T	C	666.44	PASS	AC=2;AF=0.63;AN=2;DP=1428;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1698,162,0:0,0,27,27
chr2	36782656	.	G	A	623.9	PASS	AC=2;AF=0.636;AN=2;DP=1149;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1414,126,0:0,0,31,11
chr2	36783127	.	T	C	481.21	PASS	AC=2;AF=0.636;AN=2;DP=831;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1159,105,0:0,0,25,10
chr2	36783215	.	C	T	859.83	PASS	AC=2;AF=0.591;AN=2;DP=1628;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:1997,209,0:0,0,33,37
chr2	36805676	.	A	G	631.61	PASS	AC=2;AF=0.604;AN=2;DP=1882;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2558,251,0:0,0,50,34
chr2	36805852	.	A	G	1934.72	PASS	AC=1;AF=0.5;AN=2;DP=148;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.655;QD=13.07;ReadPosRankSum=0.396;SOR=0.732;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:63,85:148:99:1963,0,1615:31,32,41,44
chr2	36806021	.	G	A	792.73	PASS	AC=2;AF=0.604;AN=2;DP=1646;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,60:61:99:1896,141,0:1,0,19,41
chr2	36806051	.	A	G	382.76	PASS	AC=2;AF=0.604;AN=2;DP=1026;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1508,135,0:0,0,12,33
chr2	36808350	.	C	T	458.89	PASS	AC=2;AF=0.625;AN=2;DP=826;MQ=60;set=variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant33-variant34-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,32:33:80:1087,80,0:1,0,25,7
chr2	36808732	.	T	G	640.55	PASS	AC=2;AF=0.769;AN=2;DP=2598;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2296,230,0:0,0,35,42
chr2	36810473	.	G	T	2005.94	PASS	AC=1;AF=0.571;AN=2;DP=2841;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant33-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,56:132:99:1263,0,1771:38,38,28,28
chr2	36810586	.	T	C	569.69	PASS	AC=2;AF=0.625;AN=2;DP=1412;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant33-variant34-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1924,171,0:0,0,15,42
chr2	36824956	.	G	GC	148.48	PASS	AC=2;AF=1;AN=2;DP=1019;FS=0;MQ=60;MQRankSum=1.22;ReadPosRankSum=1.605;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:719,60,0:0,0,10,10
chr2	36825137	.	G	A	185.41	PASS	AC=2;AF=0.803;AN=2;DP=1007;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:575,60,0:0,0,7,13
chr2	36825170	.	T	C	246.54	PASS	AC=2;AF=0.88;AN=2;DP=382;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant16-variant18-variant19-variant22-variant23-variant24-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:237,24,0:0,0,4,4
chr2	36825330	.	C	CG,CGGCCCAGCCCG	645.07	PASS	AC=2,0;AF=0.92,0.068;AN=2;DP=935;MQRankSum=0.693;ReadPosRankSum=-0.945;set=Intersection	GT:DP:GQ:SB	1/1:8:24:0,0,3,5
chr2	36923898	.	G	T	1969.37	PASS	AC=2;AF=0.989;AN=2;DP=2257;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2220,177,0:0,0,43,15
chr2	36923900	.	G	T	323.01	PASS	AC=1;AF=0.5;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant33-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:675,0,927:25,9,21,7
chr2	36924177	.	C	T	1058.62	PASS	AC=2;AF=0.989;AN=2;DP=1053;FS=0;MQ=60;MQRankSum=-1.01;ReadPosRankSum=-0.818;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1397,108,0:0,0,6,30
chr2	36943338	.	C	G	508.65	PASS	AC=2;AF=0.989;AN=2;DP=1260;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.692;ReadPosRankSum=0.361;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1149,96,0:0,0,24,8
chr2	36943419	.	T	C	2814.43	PASS	AC=2;AF=0.989;AN=2;DP=4098;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2505,237,0:0,0,45,34
chr2	36986549	.	A	G	5079.56	PASS	AC=2;AF=1;AN=2;DP=7320;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5304,518,0:0,0,79,94
chr2	36994439	.	A	C	337.45	PASS	AC=1;AF=0.648;AN=2;DP=542;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant19-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:479,0,378:4,10,4,12
chr2	37000881	.	T	A	250.98	PASS	AC=1;AF=0.643;AN=2;DP=66;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant23-variant27-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:92:92,0,266:7,2,3,1
chr2	37001570	.	C	T	1738.09	PASS	AC=2;AF=0.977;AN=2;DP=1685;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1262,120,0:0,0,12,28
chr2	37010737	.	G	A	775.98	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.565;FractionInformativeReads=1;MQ=60;MQRankSum=0.119;QD=18.93;ReadPosRankSum=0.887;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:804,0,458:4,13,4,20
chr2	37032873	.	G	A	779.86	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=7.597;FractionInformativeReads=1;MQ=60;MQRankSum=1.992;QD=13;ReadPosRankSum=-0.977;SOR=0.197;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,34:60:99:808,0,707:6,20,14,20
chr2	37072266	.	C	G	8607.69	PASS	AC=2;AF=0.919;AN=2;DP=11870;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,278:278:99:8901,833,0:0,0,145,133
chr2	37073028	.	ACACACACACACACACACACACGCATGCATG	A	126.25	PASS	AC=2;AF=0.65;AN=2;DP=115;set=variant2-variant19-variant22-variant23-variant24-variant26-variant32-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:181,12,0:0,0,1,3
chr2	37073172	.	AT	ATT,A	230.62	PASS	AC=2,0;AF=0.91,0.013;AN=2;DP=520;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:7:21:0,0,5,2
chr2	37073809	.	T	C	12371.9	PASS	AC=2;AF=0.989;AN=2;DP=17416;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,358:358:99:10577,1073,0:0,0,182,176
chr2	37074951	.	G	A	12707.1	PASS	AC=2;AF=0.919;AN=2;DP=18839;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,398:398:99:12154,1193,0:0,0,153,245
chr2	37075013	.	T	A	3026.06	PASS	AC=2;AF=0.654;AN=2;DP=5569;set=variant-variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant22-variant24-variant26-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:6504,588,0:0,0,57,139
chr2	37075397	.	T	G	6727.2	PASS	AC=2;AF=0.919;AN=2;DP=7614;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,171:171:99:5639,513,0:0,0,108,63
chr2	37076498	.	A	C	463.57	PASS	AC=1;AF=0.5;AN=2;DP=404;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant11-variant13-variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,34:72:99:936,0,1037:26,12,24,10
chr2	37076594	.	T	C	1291.04	PASS	AC=1;AF=0.5;AN=2;DP=1180;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant13-variant17-variant24-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,61:139:99:1468,0,1740:39,39,32,29
chr2	37077015	.	C	A	193.47	PASS	AC=2;AF=1;AN=2;DP=541;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:276,24,0:0,0,2,6
chr2	37078095	.	A	ATT,AT	252.89	PASS	AC=2,0;AF=0.378,0.451;AN=2;DP=590;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:9:27:0,0,8,1
chr2	37094945	.	A	G	1880.62	PASS	AC=2;AF=0.966;AN=2;DP=2637;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1569,159,0:0,0,30,23
chr2	37095139	.	G	C	105.42	PASS	AC=2;AF=0.685;AN=2;DP=375;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant30-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:464,36,0:0,0,1,11
chr2	37096970	.	C	T	328.4	PASS	AC=2;AF=0.939;AN=2;DP=322;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:300,21,0:0,0,0,7
chr2	37152499	.	T	C	126.95	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.198;QD=18.14;ReadPosRankSum=0.198;SOR=1.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:66:155,0,66:1,1,1,4
chr2	37208490	.	A	G	2563.72	PASS	AC=1;AF=0.5;AN=2;DP=225;FS=5.503;FractionInformativeReads=1;MQ=60;MQRankSum=-0.9;QD=11.39;ReadPosRankSum=-0.852;SOR=0.588;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:127,98:225:99:2592,0,3278:71,56,47,51
chr2	37230728	.	T	C	755.76	PASS	AC=1;AF=0.5;AN=2;DP=635;MQ=60;set=variant2-variant4-variant6-variant11-variant13-variant17-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:597,0,774:18,14,14,13
chr2	37234480	.	CTTTT	CTTTTTTT,CT,CTTTTT,C,CTT,CTTTTTT	69.23	PASS	AC=0,0,0,1,0,0;AF=0.083,0.083,0.083,0.167,0.125,0.042;AN=2;DP=257;set=variant-variant2-variant7-variant9-variant11-variant13-variant15-variant19-filterInvariant29-variant36-variant37-variant41	GT:DP:GQ:SB	0/4:4:17:0,1,0,3
chr2	37234519	.	T	C	71.25	PASS	AC=1;AF=0.857;AN=2;DP=120;FS=0;set=variant3-variant4-variant5-variant9-variant10-variant11-variant13-variant17-variant19-variant20-variant23-variant24-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:78:78,0,78:1,1,0,2
chr2	37241050	.	G	A	737.67	PASS	AC=1;AF=0.5;AN=2;DP=1205;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant11-variant12-variant13-variant15-variant17-variant32-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,40:77:99:912,0,875:17,20,17,23
chr2	37248015	.	T	C	190.45	PASS	AC=2;AF=0.536;AN=2;DP=282;MQ=60;set=variant2-variant3-variant4-variant6-variant9-variant11-variant12-variant13-variant15-variant17-variant32-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:827,72,0:0,0,7,17
chr2	37255015	.	G	A	121.07	PASS	AC=2;AF=0.706;AN=2;DP=738;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:83:897,83,0:0,0,20,8
chr2	37255806	.	C	T	291.4	PASS	AC=1;AF=0.5;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant11-variant13-variant17-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:388,0,349:9,0,10,2
chr2	37276993	.	TAAA	TAA,TAAAA,TAAAAA,T,TA	56.7	PASS	AC=0,0,0,0,1;AF=0.367,0.033,0.067,0.033,0.067;AN=2;DP=370;set=filterInvariant-variant5-variant8-variant9-variant12-variant13-variant15-variant17-variant21-filterInvariant23-filterInvariant28-variant30-filterInvariant32-variant41-filterInvariant44	GT:DP:GQ:SB	0/5:15:99:4,6,1,4
chr2	37287683	.	T	A	677.39	PASS	AC=1;AF=0.5;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant15-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:702,0,579:15,9,18,12
chr2	37299145	.	G	A	559.62	PASS	AC=1;AF=0.583;AN=2;DP=889;FractionInformativeReads=1;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant21-variant24-variant25-variant27-variant29-variant30-variant31-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,21:37:99:744,0,412:13,3,19,2
chr2	37302556	.	GA	G	910.68	PASS	AC=2;AF=0.989;AN=2;DP=1688;MQ=60;MQRankSum=0.161;ReadPosRankSum=-0.023;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1111,111,0:0,0,31,6
chr2	37306172	.	C	A	666.17	PASS	AC=1;AF=0.5;AN=2;DP=241;FractionInformativeReads=1;MQ=60;set=variant10-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,25:55:99:643,0,724:15,15,13,12
chr2	37306343	.	G	A	1638.48	PASS	AC=2;AF=0.989;AN=2;DP=2258;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1647,165,0:0,0,25,30
chr2	37311339	.	T	C	319.98	PASS	AC=1;AF=0.5;AN=2;DP=149;MQ=60;set=variant10-variant12-variant15-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:99:163,0,556:13,3,5,1
chr2	37311415	.	G	C	1100.75	PASS	AC=1;AF=0.5;AN=2;DP=391;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant15-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,30:62:99:783,0,836:18,14,21,9
chr2	37311493	.	C	G	1979.88	PASS	AC=1;AF=0.5;AN=2;DP=545;MQ=60;set=variant10-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,59:108:99:1569,0,1285:26,23,39,20
chr2	37317869	.	C	T	1573.73	PASS	AC=2;AF=0.989;AN=2;DP=2152;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1887,183,0:0,0,27,34
chr2	37318006	.	C	T	103.94	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.378;QD=8.66;ReadPosRankSum=-1.718;SOR=0.269;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:132,0,169:1,5,2,4
chr2	37318041	.	A	G	151.77	PASS	AC=1;AF=0.811;AN=2;DP=213;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:27:204,0,27:0,1,0,5
chr2	37324096	.	T	TC	6232.56	PASS	AC=2;AF=0.966;AN=2;DP=9025;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,180:180:99:5870,544,0:0,0,109,71
chr2	37325495	.	GTA	G	471.24	PASS	AC=1;AF=0.68;AN=2;DP=335;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant16-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:101,0,242:4,2,3,0
chr2	37325512	.	T	G	1357.29	PASS	AC=1;AF=0.7;AN=2;DP=771;set=variant-variant4-variant6-variant8-variant9-variant10-variant13-variant16-variant17-variant21-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:264,0,421:7,5,9,2
chr2	37325514	.	G	T	112.46	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=2.52;FractionInformativeReads=0.8;MQ=60;MQRankSum=-0.698;QD=4.5;ReadPosRankSum=2.269;SOR=0.156;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:141,0,657:12,3,3,2
chr2	37325516	.	G	T	68.65	PASS	AC=1;AF=0.5;AN=2;DP=60;MQ=60;set=variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,5:21:99:138,0,689:13,3,3,2
chr2	37325518	.	G	T	109.19	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=2.611;FractionInformativeReads=0.815;MQ=60;MQRankSum=-1.254;QD=4.04;ReadPosRankSum=2.429;SOR=0.119;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,5:22:99:137,0,689:14,3,3,2
chr2	37325780	.	A	G	1567.42	PASS	AC=1;AF=0.66;AN=2;DP=1513;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant14-variant16-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,30:48:99:865,0,572:5,13,11,19
chr2	37327244	.	A	G	1334.04	PASS	AC=2;AF=0.817;AN=2;DP=2557;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1948,179,0:0,0,42,18
chr2	37327684	.	A	C	12726.2	PASS	AC=2;AF=0.821;AN=2;DP=15464;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,342:342:99:10710,1025,0:0,0,141,201
chr2	37327806	.	C	T	5766.65	PASS	AC=1;AF=0.625;AN=2;DP=3718;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant14-variant16-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,79:145:99:2270,0,1774:28,38,26,53
chr2	37328362	.	G	T	11472.9	PASS	AC=2;AF=0.989;AN=2;DP=12368;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,273:274:99:8855,810,0:1,0,154,119
chr2	37329534	.	A	C	11878.6	PASS	AC=2;AF=0.966;AN=2;DP=16627;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,337:337:99:10187,1008,0:0,0,163,174
chr2	37331841	.	CT	C	329.91	PASS	AC=1;AF=0.5;AN=2;DP=12128;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant13-filterInvariant14-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant22-filterInvariant24-filterInvariant26-filterInvariant28-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:239,52:291:99:396,0,5336:124,115,26,26
chr2	37332444	.	G	A	710.21	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.428;QD=19.73;ReadPosRankSum=-0.856;SOR=0.487;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,23:36:99:738,0,414:2,11,5,18
chr2	37333711	.	CT	CTT,C	427.69	PASS	AC=1,0;AF=0.293,0.207;AN=2;DP=11656;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant12-filterInvariant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-variant21-filterInvariant22-variant24-variant25-filterInvariant26-filterInvariant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant35-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:181:99:59,80,15,27
chr2	37334185	.	T	TA,TAA	163.12	PASS	AC=2,0;AF=0.881,0.012;AN=2;DP=355;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:5:18:0,0,3,2
chr2	37336403	.	G	C	575.52	PASS	AC=1;AF=0.5;AN=2;DP=169;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:440,0,621:9,14,5,10
chr2	37342456	.	T	C	247.45	PASS	AC=2;AF=0.977;AN=2;DP=1411;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:783,72,0:0,0,16,8
chr2	37362474	.	A	G	130.7	PASS	AC=1;AF=0.5;AN=2;DP=47;FractionInformativeReads=1;MQ=60;set=variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:151,0,199:5,1,4,1
chr2	37362555	.	T	G	266.23	PASS	AC=1;AF=0.5;AN=2;DP=181;FractionInformativeReads=1;MQ=60;set=variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:645,0,720:17,11,18,7
chr2	37365798	.	A	G	614.42	PASS	AC=1;AF=0.5;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant9-variant15-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:352,0,454:7,11,2,10
chr2	37373982	.	A	AT	5011.96	PASS	AC=2;AF=0.977;AN=2;DP=4178;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:3559,271,0:0,0,51,37
chr2	37375932	.	G	A	2723.23	PASS	AC=2;AF=0.641;AN=2;DP=2508;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1730,173,0:0,0,35,23
chr2	37376291	.	G	A	3613.16	PASS	AC=1;AF=0.591;AN=2;DP=4476;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,82:159:99:1991,0,1738:41,36,41,41
chr2	37384053	.	GCGCCGCCGCCGC	GCGCCGCCGCCGCCGC,G,GCGC	1215.73	PASS	AC=0,0,1;AF=0.222,0.056,0.278;AN=2;DP=561;set=variant12-variant14-variant15-variant22-variant24-variant27-variant29-variant30-variant41	GT:DP:GQ:SB	0/3:55:99:18,19,7,11
chr2	37384108	.	G	A	983.46	PASS	AC=1;AF=0.5;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,33:78:99:788,0,1197:21,24,17,16
chr2	37384213	.	C	A	600.32	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=6.598;FractionInformativeReads=1;MQ=60;MQRankSum=-0.455;QD=9.24;ReadPosRankSum=-0.772;SOR=0.642;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:629,0,873:14,22,16,13
chr2	37384240	.	C	G	590.94	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=7.971;FractionInformativeReads=1;MQ=60;MQRankSum=-0.626;QD=11.36;ReadPosRankSum=0.921;SOR=0.337;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:619,0,760:9,20,12,11
chr2	37384283	.	A	G	681.13	PASS	AC=2;AF=0.641;AN=2;DP=1102;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1118,99,0:0,0,9,24
chr2	37402270	.	C	G	1453.69	PASS	AC=1;AF=0.621;AN=2;DP=1277;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,25:40:99:677,0,385:10,5,16,9
chr2	37402373	.	A	G	1744.72	PASS	AC=1;AF=0.621;AN=2;DP=1815;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,36:68:99:824,0,739:16,16,17,19
chr2	37410537	.	C	T	2329.48	PASS	AC=2;AF=0.706;AN=2;DP=1843;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1776,165,0:0,0,37,18
chr2	37414431	.	A	C	2316.12	PASS	AC=1;AF=0.617;AN=2;DP=2010;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:622,0,576:14,8,16,9
chr2	37415496	.	G	C	1457.72	PASS	AC=2;AF=0.81;AN=2;DP=1575;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2078,189,0:0,0,44,19
chr2	37423678	.	A	G	1831.18	PASS	AC=1;AF=0.5;AN=2;DP=493;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,83:153:99:2164,0,1463:35,35,40,43
chr2	37425629	.	A	G	292.45	PASS	AC=1;AF=0.609;AN=2;DP=818;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:454,0,250:7,6,10,8
chr2	37428041	.	G	A	188.84	PASS	AC=1;AF=0.5;AN=2;DP=62;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:358,0,251:6,3,7,7
chr2	37428743	.	C	T	3911.16	PASS	AC=2;AF=0.786;AN=2;DP=4678;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2829,282,0:0,0,54,40
chr2	37429851	.	C	T	383.53	PASS	AC=1;AF=0.5;AN=2;DP=44;FractionInformativeReads=1;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,6:26:99:107,0,564:14,6,4,2
chr2	37431640	.	TG	T	592.73	PASS	AC=1;AF=0.606;AN=2;DP=583;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:292,0,689:7,3,7,1
chr2	37431646	.	C	G	638.22	PASS	AC=1;AF=0.606;AN=2;DP=640;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:289,0,728:9,5,6,1
chr2	37438993	.	G	A	1694.48	PASS	AC=1;AF=0.621;AN=2;DP=1501;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,31:50:99:877,0,509:12,7,20,11
chr2	37456032	.	C	T	4529.06	PASS	AC=2;AF=0.955;AN=2;DP=4956;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3492,344,0:0,0,72,43
chr2	37458711	.	G	A	1803.5	PASS	AC=1;AF=0.617;AN=2;DP=4641;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:68,97:165:99:2356,0,1683:34,34,51,46
chr2	37458898	.	G	A	402.08	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,41:64:99:1107,0,552:7,16,13,28
chr2	37463384	.	T	C	404.82	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:177,0,357:1,9,0,5
chr2	37475976	.	G	C	907.08	PASS	AC=1;AF=0.694;AN=2;DP=768;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,16:34:99:592,0,520:14,4,14,2
chr2	37476057	.	C	CA	2089.39	PASS	AC=1;AF=0.689;AN=2;DP=2817;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1020,0,1195:30,24,32,15
chr2	37477794	.	C	A	5605.71	PASS	AC=2;AF=0.78;AN=2;DP=6379;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3398,347,0:0,0,64,52
chr2	37478477	.	A	G	4888.44	PASS	AC=1;AF=0.5;AN=2;DP=3161;MQ=60;set=variant3-variant13-variant18-variant24-variant30-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:137,156:293:99:3823,0,3748:80,57,90,66
chr2	37479023	.	GA	GAA,G	1085.6	PASS	AC=1,0;AF=0.455,0.045;AN=2;DP=1032;MQ=60;set=variant3-variant13-variant18-variant24-filterInvariant27-variant30-variant36-variant37-variant39-variant41-variant42	GT:DP:GQ:SB	0/1:95:99:23,31,20,21
chr2	37479756	.	C	T	7229.12	PASS	AC=1;AF=0.6;AN=2;DP=6037;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:97,76:173:99:1856,0,2662:51,46,36,40
chr2	37479862	.	C	T	7830.01	PASS	AC=2;AF=0.78;AN=2;DP=9145;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,188:188:99:5238,562,0:0,0,79,109
chr2	37479959	.	A	C	2175.84	PASS	AC=2;AF=0.78;AN=2;DP=2148;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2177,171,0:0,0,12,45
chr2	37479965	.	A	AAAAC	847.51	PASS	AC=1;AF=0.5;AN=2;DP=323;MQ=60;set=variant13-variant18-variant24-variant30-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:562,0,739:5,15,3,14
chr2	37479988	.	A	ATT	121.19	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=0.529;MQ=60;MQRankSum=0;QD=7.13;ReadPosRankSum=0;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:158,0,117:2,3,1,3
chr2	37480249	.	A	G	12743.7	PASS	AC=1;AF=0.583;AN=2;DP=8582;MQ=60;set=variant-variant5-variant6-variant8-variant10-variant12-variant14-variant15-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:180,177:357:99:4407,0,4665:79,101,81,96
chr2	37480319	.	A	AT	2702.79	PASS	AC=1;AF=0.5;AN=2;DP=1611;MQ=60;set=variant13-variant18-variant24-variant30-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:107,110:217:99:3267,0,3159:45,62,43,67
chr2	37486774	.	A	G	677.5	PASS	AC=1;AF=0.5;AN=2;DP=356;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,56:108:99:1239,0,1192:24,28,24,32
chr2	37502951	.	G	T	449.2	PASS	AC=1;AF=0.5;AN=2;DP=146;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:661,0,899:22,15,18,13
chr2	37505105	.	T	G	2850.37	PASS	AC=1;AF=0.5;AN=2;DP=2186;MQ=60;set=variant3-variant13-variant15-variant18-variant24-variant30-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:97,89:186:99:2091,0,2388:37,60,36,53
chr2	37516481	.	T	C	861.04	PASS	AC=1;AF=0.5;AN=2;DP=733;MQ=60;set=variant3-variant13-variant15-variant18-variant24-variant30-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:688,0,795:19,12,18,8
chr2	37518045	.	G	C	4231.07	PASS	AC=1;AF=0.6;AN=2;DP=4397;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:85,62:147:99:1558,0,2002:45,40,35,27
chr2	37543371	.	A	G	3048.99	PASS	AC=1;AF=0.609;AN=2;DP=1371;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant11-variant12-variant13-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,34:62:99:1044,0,719:20,8,27,7
chr2	37545203	.	T	G	370.77	PASS	AC=1;AF=0.589;AN=2;DP=326;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:141,0,234:1,5,0,4
chr2	37571752	.	G	A	2637.77	PASS	AC=2;AF=1;AN=2;DP=4691;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3308,302,0:0,0,62,39
chr2	37579937	.	C	T	956.19	PASS	AC=1;AF=0.5;AN=2;DP=567;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant15-variant18-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:636,0,903:21,15,16,12
chr2	37579992	.	A	G	1088.89	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=1.796;FractionInformativeReads=1;MQ=60;MQRankSum=-0.181;QD=13.28;ReadPosRankSum=-1.313;SOR=0.51;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,42:82:99:1117,0,1086:24,16,23,19
chr2	37586680	.	C	T	304.52	PASS	AC=1;AF=0.5;AN=2;DP=176;FractionInformativeReads=1;MQ=60;set=variant13-variant18-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,31:52:99:1238,0,1330:16,5,21,10
chr2	37586681	.	A	G	738.87	PASS	AC=1;AF=0.64;AN=2;DP=865;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant10-variant13-variant15-variant16-variant18-variant20-variant21-variant24-variant26-variant27-variant29-variant30-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,31:52:99:1238,0,1330:16,5,21,10
chr2	37595696	.	A	C	4563.79	PASS	AC=2;AF=0.636;AN=2;DP=2895;MQ=60;set=variant3-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant18-variant22-variant24-variant25-variant26-variant29-variant30-variant32-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3518,321,0:0,0,52,55
chr2	37599680	.	G	A	2056.27	PASS	AC=1;AF=0.5;AN=2;DP=616;FractionInformativeReads=1;MQ=60;set=variant24-variant30-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,57:102:99:1617,0,1741:27,18,26,31
chr2	37599688	.	A	G	2404.4	PASS	AC=1;AF=0.571;AN=2;DP=1103;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant18-variant26-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,44:106:99:1251,0,2389:30,32,26,18
chr2	37599988	.	G	T	3961.25	PASS	AC=1;AF=0.571;AN=2;DP=1744;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant18-variant26-variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:102,135:237:99:3836,0,2680:62,40,80,55
chr2	37600292	.	C	A	11926.6	PASS	AC=2;AF=0.955;AN=2;DP=17208;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,356:356:99:10615,1069,0:0,0,175,181
chr2	37600427	.	A	G	1719.03	PASS	AC=1;AF=0.55;AN=2;DP=1082;MQ=60;set=variant3-variant7-variant13-variant15-variant18-variant26-variant32-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,46:91:99:1361,0,1381:9,36,9,37
chr2	37870731	.	G	C	1666.49	PASS	AC=1;AF=0.5;AN=2;DP=586;MQ=60;set=variant3-variant20-variant24-variant32-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,44:91:99:1285,0,1443:29,18,25,19
chr2	37871766	.	TAA	TA,T	823.93	PASS	AC=1,0;AF=0.5,0.023;AN=2;DP=8893;set=Intersection	GT:DP:GQ:SB	0/1:151:99:55,35,35,26
chr2	37898910	.	A	G	472.98	PASS	AC=1;AF=0.5;AN=2;DP=558;MQ=60;set=variant-variant3-variant9-variant14-variant15-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:319,0,198:3,5,6,7
chr2	37898959	.	C	T	328.6	PASS	AC=1;AF=0.525;AN=2;DP=564;MQ=60;set=variant-variant3-variant9-variant14-variant15-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,19:30:99:765,0,405:6,5,10,9
chr2	37898963	.	CG	CAG,CGGG,C	682.73	PASS	AC=2,0,0;AF=0.864,0.068,0.011;AN=2;DP=1169;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:31:86:0,0,17,14
chr2	37898964	.	G	GC	316.56	PASS	AC=1;AF=0.525;AN=2;DP=583;MQ=60;set=variant-variant3-variant9-variant14-variant15-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant32-variant34-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:759,0,454:7,6,10,9
chr2	37898965	.	G	GGGT	263.23	PASS	AC=1;AF=0.737;AN=2;DP=1015;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:444,0,783:10,10,7,5
chr2	37899310	.	A	G	357.16	PASS	AC=1;AF=0.718;AN=2;DP=2641;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,28:66:99:669,0,868:16,22,10,18
chr2	37899418	.	A	G	377.44	PASS	AC=2;AF=0.939;AN=2;DP=537;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:421,42,0:0,0,5,9
chr2	38152509	.	G	C	1411.82	PASS	AC=2;AF=0.614;AN=2;DP=2668;MQ=60;set=variant2-variant3-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3021,306,0:0,0,60,42
chr2	38156024	.	T	C	4356.39	PASS	AC=1;AF=0.5;AN=2;DP=392;FS=0.763;FractionInformativeReads=1;MQ=60;MQRankSum=2.042;QD=11.11;ReadPosRankSum=-2.117;SOR=0.749;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:202,190:392:99:4385,0,5203:91,111,83,107
chr2	38156133	.	G	A	3561.5	PASS	AC=2;AF=0.966;AN=2;DP=4410;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3800,294,0:0,0,10,88
chr2	38177525	.	A	C	1655.5	PASS	AC=1;AF=0.65;AN=2;DP=1204;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,17:46:99:391,0,883:22,7,10,7
chr2	38178406	.	A	G	2336.49	PASS	AC=1;AF=0.633;AN=2;DP=2130;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,32:66:99:877,0,814:22,12,19,13
chr2	38179134	.	G	A	3462.36	PASS	AC=2;AF=1;AN=2;DP=5065;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3741,368,0:0,0,62,61
chr2	38179773	.	A	G	10535.6	PASS	AC=2;AF=0.884;AN=2;DP=13513;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,301:301:99:9412,901,0:0,0,143,158
chr2	38180069	.	G	C	1219.77	PASS	AC=2;AF=0.893;AN=2;DP=1609;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1079,93,0:0,0,17,14
chr2	38180088	.	G	A	1287.68	PASS	AC=2;AF=0.784;AN=2;DP=1577;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1593,111,0:0,0,19,16
chr2	38180091	.	A	G	1093.82	PASS	AC=2;AF=0.579;AN=2;DP=796;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant25-variant29-variant31-variant32-variant33-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1593,111,0:0,0,18,18
chr2	38208233	.	T	C	1017.38	PASS	AC=2;AF=0.655;AN=2;DP=718;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:979,75,0:0,0,21,4
chr2	38208606	.	A	T	387.56	PASS	AC=2;AF=0.583;AN=2;DP=288;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant15-variant16-variant18-variant19-variant25-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:668,57,0:0,0,5,14
chr2	38218470	.	TA	T	786.58	PASS	AC=2;AF=0.556;AN=2;DP=290;MQ=60;set=variant3-variant13-variant15-variant29-variant31-variant33-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1067,84,0:0,0,10,18
chr2	38244826	.	A	G	4474.84	PASS	AC=2;AF=0.556;AN=2;DP=2780;FractionInformativeReads=1;set=variant3-variant13-variant15-variant29-variant31-variant33-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,276:276:99:7843,826,0:0,0,129,147
chr2	38295994	.	G	A	7151.11	PASS	AC=2;AF=0.625;AN=2;DP=2151;MQ=60;set=variant3-variant31-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,453:453:99:13609,1356,0:0,0,225,228
chr2	38296890	.	T	C	11715.8	PASS	AC=2;AF=0.694;AN=2;DP=10235;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,259:260:99:8246,767,0:0,1,130,129
chr2	38297170	.	C	A	14299.9	PASS	AC=2;AF=0.829;AN=2;DP=16794;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,378:378:99:11843,1131,0:0,0,190,188
chr2	38297515	.	G	T	8591.83	PASS	AC=2;AF=0.805;AN=2;DP=9037;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,225:226:99:7449,631,0:0,1,112,113
chr2	38298150	.	A	G	3178.86	PASS	AC=2;AF=0.708;AN=2;DP=4408;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2944,279,0:0,0,49,44
chr2	38298203	.	C	G	3331.67	PASS	AC=2;AF=0.708;AN=2;DP=4601;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3370,330,0:0,0,53,57
chr2	38302177	.	C	A	7427.91	PASS	AC=2;AF=0.571;AN=2;DP=5173;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant15-variant17-variant18-variant19-variant21-variant22-variant28-variant29-variant30-variant31-variant33-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,239:240:99:7222,707,0:1,0,111,128
chr2	38302390	.	G	C	3563.94	PASS	AC=2;AF=0.568;AN=2;DP=2629;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant28-variant29-variant31-variant33-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4439,413,0:0,0,74,64
chr2	38302544	.	G	A	2986.01	PASS	AC=2;AF=0.571;AN=2;DP=2620;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant28-variant29-variant31-variant33-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,108:109:99:3548,287,0:1,0,46,62
chr2	38302794	.	C	T	292.51	PASS	AC=2;AF=0.575;AN=2;DP=327;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant15-variant17-variant18-variant21-variant22-variant23-variant28-variant29-variant31-variant33-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:519,42,0:0,0,10,4
chr2	38303017	.	A	AG	3660.55	PASS	AC=2;AF=1;AN=2;DP=5130;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:4288,346,0:0,0,65,50
chr2	38522144	.	CG	CGG,C	392.79	PASS	AC=1,0;AF=0.35,0.15;AN=2;DP=609;MQ=60;set=variant3-filterInvariant13-filterInvariant15-variant18-variant20-filterInvariant23-variant31-filterInvariant36-variant41-variant44	GT:DP:GQ:SB	0/1:43:99:11,0,32,0
chr2	38604219	.	G	C	399.2	PASS	AC=2;AF=0.583;AN=2;DP=149;FractionInformativeReads=1;MQ=60;set=variant3-variant20-variant31-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1023,78,0:0,0,22,4
chr2	38709568	.	A	G	1086.61	PASS	AC=2;AF=0.55;AN=2;DP=896;FractionInformativeReads=1;set=variant3-variant9-variant10-variant13-variant15-variant20-variant23-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2952,270,0:0,0,54,36
chr2	38789185	.	T	A	1569.34	PASS	AC=1;AF=0.5;AN=2;DP=567;MQ=60;set=variant3-variant8-variant18-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,44:116:99:1163,0,1792:43,29,31,13
chr2	38956947	.	A	G	2846.29	PASS	AC=2;AF=0.676;AN=2;DP=3690;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3068,287,0:0,0,35,61
chr2	38957055	.	T	C	799.48	PASS	AC=2;AF=0.989;AN=2;DP=1231;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:976,87,0:0,0,9,20
chr2	38960927	.	G	A	2316.02	PASS	AC=2;AF=0.689;AN=2;DP=3069;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1578,162,0:0,0,26,28
chr2	38961832	.	G	GA	1340.67	PASS	AC=1;AF=0.5;AN=2;DP=5797;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,67:88:99:1074,0,227:12,9,31,36
chr2	38971040	.	GT	GTT,G,GTTT	3166.29	PASS	AC=2,0,0;AF=0.5,0.026,0.092;AN=2;DP=6713;set=variant-filterInvariant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:167:99:6,10,74,77
chr2	38971641	.	T	TCA	12414.1	PASS	AC=2;AF=0.966;AN=2;DP=11250;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:8805,599,0:0,0,96,100
chr2	38975332	.	GT	G,GTT	104.5	DRAGENHardINDEL	AC=1,0;AF=0.375,0.125;AN=2;DP=285;MQ=60;set=FilteredInAll	GT:DP:GQ:SB	0/1:58:99:17,30,4,7
chr2	38977371	.	C	T	2270.14	PASS	AC=2;AF=0.738;AN=2;DP=2787;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1685,155,0:0,0,15,37
chr2	38977402	.	T	C	1697.06	PASS	AC=2;AF=0.738;AN=2;DP=1748;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1327,111,0:0,0,6,31
chr2	38978764	.	T	C	1525.77	PASS	AC=2;AF=0.738;AN=2;DP=3111;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2526,222,0:0,0,25,49
chr2	39005205	.	T	C	251.35	PASS	AC=2;AF=0.764;AN=2;DP=430;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:243,27,0:0,0,5,4
chr2	39006603	.	T	G	2484.13	PASS	AC=2;AF=1;AN=2;DP=4274;FS=0;MQ=60;MQRankSum=1.225;ReadPosRankSum=-1.479;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:1950,203,0:0,0,37,31
chr2	39025043	.	GA	GAA,G	414.04	PASS	AC=2,0;AF=0.511,0.375;AN=2;DP=1472;set=Intersection	GT:DP:GQ:SB	1/1:31:13:1,2,15,13
chr2	39025555	.	G	A	5013.23	PASS	AC=2;AF=0.73;AN=2;DP=5710;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:4962,476,0:0,0,70,89
chr2	39025632	.	A	G	3103.78	PASS	AC=2;AF=0.73;AN=2;DP=2900;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3116,284,0:0,0,30,65
chr2	39030074	.	C	T	2429.7	PASS	AC=2;AF=0.703;AN=2;DP=3393;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:2994,299,0:0,0,45,55
chr2	39042639	.	G	A	3100.03	PASS	AC=2;AF=0.989;AN=2;DP=3042;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1812,170,0:0,0,38,19
chr2	39045885	.	C	T	604.21	PASS	AC=2;AF=0.73;AN=2;DP=985;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:580,57,0:0,0,12,7
chr2	39050019	.	G	T	808.14	PASS	AC=2;AF=1;AN=2;DP=1238;FS=0;MQ=60;MQRankSum=-0.657;ReadPosRankSum=0.06;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1145,93,0:0,0,23,8
chr2	39050061	.	AT	A	1186.56	PASS	AC=2;AF=1;AN=2;DP=2137;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1452,126,0:0,0,29,13
chr2	39050141	.	A	C	2000.21	PASS	AC=2;AF=0.724;AN=2;DP=3875;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2540,229,0:0,0,43,33
chr2	39065729	.	C	A	687.33	PASS	AC=2;AF=0.73;AN=2;DP=684;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:68:712,68,0:0,0,17,6
chr2	39075356	.	A	C	436.33	PASS	AC=2;AF=0.73;AN=2;DP=509;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:179,18,0:0,0,4,2
chr2	39082344	.	T	C	5773.31	PASS	AC=2;AF=0.724;AN=2;DP=7520;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,184:184:99:5586,552,0:0,0,84,100
chr2	39090696	.	T	C	2367.78	PASS	AC=2;AF=1;AN=2;DP=2549;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1809,162,0:0,0,16,38
chr2	39103032	.	G	GC	3970.16	PASS	AC=2;AF=1;AN=2;DP=5474;FS=0;MQ=60;MQRankSum=-1.051;ReadPosRankSum=0.015;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:5187,439,0:0,0,66,80
chr2	39109935	.	A	AT,ATT	329.64	PASS	AC=1,0;AF=0.45,0.113;AN=2;DP=1839;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:23:99:0,11,0,12
chr2	39117117	.	G	A	3636.86	PASS	AC=2;AF=0.714;AN=2;DP=4716;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3995,395,0:0,0,64,68
chr2	39122899	.	T	TG	655.18	PASS	AC=1;AF=0.5;AN=2;DP=162;MQ=60;set=variant7-variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:506,0,432:14,8,18,7
chr2	39122900	.	T	G	1325.83	PASS	AC=1;AF=0.966;AN=2;DP=2580;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:367,0,581:19,8,13,7
chr2	39122941	.	A	C	2139.37	PASS	AC=2;AF=0.768;AN=2;DP=3069;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2172,224,0:0,0,40,35
chr2	39184964	.	A	G	160.85	PASS	AC=2;AF=0.662;AN=2;DP=622;MQ=60;set=variant-variant3-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:572,48,0:0,0,12,4
chr2	39185048	.	C	T	1060.48	PASS	AC=2;AF=0.909;AN=2;DP=2824;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1733,167,0:0,0,37,19
chr2	39187190	.	T	C	2228.45	PASS	AC=2;AF=0.92;AN=2;DP=6366;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4608,416,0:0,0,73,66
chr2	39187519	.	A	G	170.08	PASS	AC=2;AF=0.92;AN=2;DP=2012;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1231,114,0:0,0,14,24
chr2	39187628	.	A	G	258.69	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.106;QD=12.32;ReadPosRankSum=-2.289;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:287,0,306:7,4,7,3
chr2	39198966	.	A	G	844.31	PASS	AC=2;AF=0.92;AN=2;DP=1812;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1266,126,0:0,0,27,15
chr2	39208512	.	A	AG	1611.4	PASS	AC=2;AF=0.92;AN=2;DP=4126;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3404,291,0:0,0,61,35
chr2	39209047	.	A	G	1350.68	PASS	AC=2;AF=0.909;AN=2;DP=4021;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,88:89:99:2911,231,0:1,0,34,54
chr2	39209426	.	A	G	1797.55	PASS	AC=2;AF=0.909;AN=2;DP=6236;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3944,354,0:0,0,51,67
chr2	39210398	.	A	T	7839.98	PASS	AC=2;AF=0.92;AN=2;DP=22235;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,477:477:99:15287,1428,0:0,0,218,259
chr2	39210719	.	T	TTA	608.05	PASS	AC=2;AF=0.909;AN=2;DP=1334;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:51:749,51,0:0,0,7,9
chr2	39211121	.	T	C	3654.87	PASS	AC=2;AF=0.909;AN=2;DP=12672;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,234:234:99:7473,700,0:0,0,123,111
chr2	39211358	.	TA	T	4859.46	PASS	AC=2;AF=0.92;AN=2;DP=12246;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,232:232:99:8256,698,0:0,0,117,115
chr2	39212565	.	T	TTG	1839.79	PASS	AC=2;AF=0.909;AN=2;DP=5479;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:4442,304,0:0,0,55,45
chr2	39212637	.	T	C	1511.29	PASS	AC=2;AF=0.731;AN=2;DP=5341;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3401,329,0:0,0,54,56
chr2	39214821	.	A	C	154.46	PASS	AC=2;AF=0.929;AN=2;DP=454;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:414,33,0:0,0,3,8
chr2	39224351	.	G	T	482.27	PASS	AC=2;AF=0.92;AN=2;DP=1124;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1058,90,0:0,0,23,7
chr2	39224615	.	G	GT	466.71	PASS	AC=2;AF=0.92;AN=2;DP=1679;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:698,69,0:0,0,8,15
chr2	39233500	.	G	A	128.41	PASS	AC=2;AF=0.93;AN=2;DP=823;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:401,33,0:0,0,9,2
chr2	39251375	.	T	TCAC	346.36	PASS	AC=2;AF=0.932;AN=2;DP=714;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:765,51,0:0,0,5,12
chr2	39262068	.	C	T	545.31	PASS	AC=2;AF=0.92;AN=2;DP=1866;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1319,120,0:0,0,13,27
chr2	39281730	.	G	C	152.82	PASS	AC=2;AF=0.909;AN=2;DP=506;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:652,48,0:0,0,15,1
chr2	39402978	.	A	AG	7469.99	PASS	AC=2;AF=0.92;AN=2;DP=15860;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,352:352:99:13995,1057,0:0,0,195,157
chr2	39406572	.	C	A	444.25	PASS	AC=2;AF=0.898;AN=2;DP=1086;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:960,90,0:0,0,9,21
chr2	39440727	.	G	C	304.5	PASS	AC=2;AF=0.89;AN=2;DP=1377;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1313,126,0:0,0,16,26
chr2	39452861	.	C	T	1326.16	PASS	AC=2;AF=0.895;AN=2;DP=2503;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1761,173,0:0,0,33,25
chr2	39517558	.	C	T	322.99	PASS	AC=2;AF=1;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;QD=23.97;SOR=3.056;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:351,27,0:0,0,1,8
chr2	39526842	.	A	C	1148.2	PASS	AC=2;AF=1;AN=2;DP=1964;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1295,114,0:0,0,26,12
chr2	39944055	.	G	A	32.47	PASS	AC=2;AF=0.683;AN=2;DP=379;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:336,24,0:0,0,8,0
chr2	39963667	.	A	G	1184.81	PASS	AC=2;AF=0.686;AN=2;DP=3906;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3225,309,0:0,0,44,59
chr2	39982898	.	G	GAGTAT	124.57	PASS	AC=1;AF=0.708;AN=2;DP=172;MQ=60;set=variant2-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant21-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,382:5,1,3,0
chr2	39993167	.	T	C	1261.98	PASS	AC=1;AF=0.661;AN=2;DP=3263;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,39:88:99:835,0,1243:24,25,22,17
chr2	39995885	.	C	T	280.43	PASS	AC=2;AF=0.688;AN=2;DP=1216;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1401,120,0:0,0,15,25
chr2	39995908	.	A	G	99.12	PASS	AC=2;AF=0.69;AN=2;DP=856;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1175,84,0:0,0,8,20
chr2	40006430	.	A	C	539.13	PASS	AC=1;AF=0.679;AN=2;DP=1016;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:486,0,701:3,12,4,9
chr2	40006442	.	C	T	472.49	PASS	AC=1;AF=0.679;AN=2;DP=767;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:378,0,603:3,10,4,5
chr2	40339478	.	GCC	GC,G	4722.76	PASS	AC=1,1;AF=0.682,0.307;AN=2;DP=9869;MQ=60;set=Intersection	GT:DP:GQ:SB	2/1:178:99:8,1,75,94
chr2	40339798	.	CA	C,CAAA,CAAAA,CAA	1312.99	PASS	AC=0,1,0,0;AF=0.129,0.419,0.016,0.065;AN=2;DP=5271;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:145:99:43,37,35,30
chr2	40339986	.	T	C	4023.85	PASS	AC=1;AF=0.629;AN=2;DP=10127;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:150,156:306:99:3973,0,3606:78,72,71,85
chr2	40340671	.	CA	C	3301.37	PASS	AC=1;AF=0.648;AN=2;DP=3941;MQ=60;set=variant-variant2-variant5-variant7-variant10-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,54:120:99:1662,0,2100:28,38,26,28
chr2	40341388	.	T	C	1944.47	PASS	AC=1;AF=0.536;AN=2;DP=1696;MQ=60;set=variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,64:108:99:1785,0,1246:13,31,25,39
chr2	40341605	.	G	A	499.16	PASS	AC=1;AF=0.563;AN=2;DP=954;MQ=60;set=variant2-variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:849,0,710:15,13,14,17
chr2	40341660	.	C	T	461.77	PASS	AC=1;AF=0.648;AN=2;DP=1743;MQ=60;set=variant-variant2-variant5-variant7-variant10-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:854,0,843:17,11,16,15
chr2	40341847	.	C	T	1743.09	PASS	AC=1;AF=0.536;AN=2;DP=1994;MQ=60;set=variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:68,76:144:99:1831,0,1666:34,34,38,38
chr2	40366301	.	G	A	136.46	PASS	AC=1;AF=0.638;AN=2;DP=633;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:96:311,0,96:3,1,8,0
chr2	40392313	.	G	C	844.77	PASS	AC=2;AF=0.966;AN=2;DP=1123;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1090,87,0:0,0,5,24
chr2	40402275	.	G	A	513.67	PASS	AC=1;AF=0.842;AN=2;DP=786;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:456,0,415:8,6,8,8
chr2	40402646	.	A	ATG,ATGTG	49.45	PASS	AC=1,0;AF=0.742,0.015;AN=2;DP=518;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:17:99:0,6,3,8
chr2	40403104	.	A	G	2498.41	PASS	AC=2;AF=0.893;AN=2;DP=3443;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1907,180,0:0,0,37,23
chr2	40403177	.	G	A	834.07	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=2.1;FractionInformativeReads=1;MQ=60;MQRankSum=1.814;QD=13.03;ReadPosRankSum=0.578;SOR=0.526;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,31:64:99:862,0,796:14,19,16,15
chr2	40404839	.	C	T	691.11	PASS	AC=2;AF=0.786;AN=2;DP=2651;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1607,138,0:0,0,34,12
chr2	40564500	.	G	A	565.07	PASS	AC=2;AF=0.571;AN=2;DP=420;FractionInformativeReads=1;MQ=60;set=variant-variant32-variant33-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1530,147,0:0,0,28,21
chr2	40564557	.	G	C	563.67	PASS	AC=2;AF=0.571;AN=2;DP=456;FractionInformativeReads=1;MQ=60;set=variant-variant32-variant33-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1686,154,0:0,0,28,24
chr2	40655563	.	CCACACACACACACACA	CCACACACACACA,CCACACACACACACA,CCACACA,CCACACACACA,C,CCACACACACACACACACA	1935.28	PASS	AC=1,0,1,0,0,0;AF=0.58,0.159,0.136,0.057,0.011,0.011;AN=2;DP=2244;set=Intersection	GT:DP:GQ:SB	3/1:56:99:0,0,42,14
chr2	42164215	.	A	C	1531.98	PASS	AC=1;AF=0.697;AN=2;DP=1702;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:632,0,723:15,15,14,10
chr2	42164975	.	AC	A	567.24	PASS	AC=1;AF=0.531;AN=2;DP=802;MQ=60;set=variant5-variant6-variant7-variant13-variant14-variant15-variant22-variant24-variant25-variant27-variant31-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:535,0,530:7,10,8,9
chr2	42165462	.	A	G	344.71	PASS	AC=1;AF=0.545;AN=2;DP=771;MQ=60;set=variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:494,0,287:8,4,9,9
chr2	42165754	.	C	T	2176.48	PASS	AC=1;AF=0.568;AN=2;DP=3566;MQ=60;set=variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,66:149:99:1658,0,1956:42,41,36,30
chr2	42165838	.	C	T	1507.69	PASS	AC=1;AF=0.5;AN=2;DP=138;FS=2.173;FractionInformativeReads=1;MQ=60;MQRankSum=-0.976;QD=10.93;ReadPosRankSum=-1.428;SOR=0.924;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:74,64:138:99:1536,0,1794:34,40,26,38
chr2	42165961	.	T	A	367.6	PASS	AC=1;AF=0.568;AN=2;DP=534;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:416,0,363:2,9,1,12
chr2	42275726	.	C	G	1436.21	PASS	AC=1;AF=0.579;AN=2;DP=1955;set=variant-variant2-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant18-variant23-variant29-variant31-variant34-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,42:77:99:1128,0,954:26,9,29,13
chr2	42275819	.	T	C	3820.51	PASS	AC=1;AF=0.593;AN=2;DP=7772;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant23-variant26-variant28-variant29-variant31-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:97,116:213:99:2828,0,2201:55,42,68,48
chr2	42284884	.	T	C	1258.2	PASS	AC=1;AF=0.5;AN=2;DP=642;MQ=60;set=variant7-variant12-variant18-variant19-variant26-variant28-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,39:72:99:1110,0,854:15,18,18,21
chr2	42285306	.	A	G	915.01	PASS	AC=1;AF=0.596;AN=2;DP=1733;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant18-variant19-variant23-variant26-variant28-variant29-variant31-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,46:74:99:1121,0,685:12,16,21,25
chr2	42396722	.	A	G	6018.09	PASS	AC=1;AF=0.718;AN=2;DP=8759;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,106:209:99:2631,0,2564:58,45,56,50
chr2	42490538	.	CTTTTTTT	CTTT,CTTTTT,CTTTTTT,C,CT,CTTTT,CTT	201.05	PASS	AC=0,0,0,0,0,1,0;AF=0.2,0.167,0.067,0.067,0.033,0.1,0.033;AN=2;DP=154;FS=0;set=variant-variant4-variant7-variant8-variant9-variant12-variant17-variant20-variant21-variant22-variant31-variant32-variant34-variant38-variant41	GT:DP:GQ:SB	0/6:4:37:0,2,0,2
chr2	42491951	.	C	T	1861.75	PASS	AC=1;AF=0.6;AN=2;DP=530;FractionInformativeReads=1;MQ=60;set=variant-variant13-variant20-variant21-variant22-variant23-variant30-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,29:72:99:636,0,1166:29,14,17,12
chr2	42492238	.	C	CT	150.54	PASS	AC=1;AF=0.5;AN=2;DP=334;MQ=60;set=variant4-variant6-variant7-variant10-variant11-variant12-variant15-variant29-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,14:19:84:336,0,84:0,5,1,13
chr2	42510018	.	A	G	3356.25	PASS	AC=2;AF=1;AN=2;DP=4934;FS=0;MQ=60;MQRankSum=-0.835;ReadPosRankSum=0.402;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2678,266,0:0,0,47,42
chr2	42511903	.	A	G	1093.43	PASS	AC=1;AF=0.593;AN=2;DP=3645;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,58:127:99:1487,0,1686:26,43,18,40
chr2	42513582	.	C	T	496.86	PASS	AC=1;AF=0.5;AN=2;DP=388;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant12-variant15-variant29-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:580,0,728:3,19,4,16
chr2	42515388	.	A	G	2318.96	PASS	AC=2;AF=0.943;AN=2;DP=3397;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2272,213,0:0,0,44,27
chr2	42515437	.	A	G	752.81	PASS	AC=1;AF=0.593;AN=2;DP=2428;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,36:91:99:782,0,1364:30,25,18,18
chr2	42552408	.	A	G	912.28	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=3.214;FractionInformativeReads=1;MQ=60;MQRankSum=0.577;QD=11.85;ReadPosRankSum=-2.108;SOR=0.365;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,36:77:99:941,0,1170:13,28,15,21
chr2	42557759	.	CT	C	1331.12	PASS	AC=1;AF=0.5;AN=2;DP=18486;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:235,106:341:99:1278,0,4239:106,129,52,54
chr2	42559256	.	A	C	1006.88	PASS	AC=1;AF=0.533;AN=2;DP=1180;MQ=60;set=variant9-variant11-variant16-variant17-variant18-variant21-variant27-variant28-variant33-variant34-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,40:63:99:1309,0,779:6,17,12,28
chr2	42560975	.	A	G	823.52	PASS	AC=1;AF=0.718;AN=2;DP=2208;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:740,0,897:18,14,16,12
chr2	42577170	.	A	G	2647.7	PASS	AC=1;AF=0.716;AN=2;DP=8262;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:106,85:191:99:2188,0,2738:47,59,40,45
chr2	42577220	.	A	G,AGG	7813.44	PASS	AC=0,1;AF=0.024,0.571;AN=2;DP=3816;MQ=60;set=variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant41-variant43	GT:DP:GQ:SB	0/2:179:99:47,57,30,45
chr2	42577803	.	T	TAAATACACAC	5411.3	PASS	AC=1;AF=0.716;AN=2;DP=8841;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:108,107:215:99:4301,0,12393:58,50,57,50
chr2	42578149	.	A	G	403.28	PASS	AC=1;AF=0.641;AN=2;DP=1303;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:499,0,698:6,17,7,11
chr2	42588195	.	T	C	596.1	PASS	AC=1;AF=0.593;AN=2;DP=2433;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,52:92:99:1235,0,932:24,16,30,22
chr2	42588856	.	T	A	1877.34	PASS	AC=1;AF=0.542;AN=2;DP=1327;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant15-variant16-variant24-variant29-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,68:122:99:1716,0,2059:29,25,32,36
chr2	42588866	.	T	C	1327.93	PASS	AC=1;AF=0.5;AN=2;DP=120;FS=3.342;FractionInformativeReads=1;MQ=60;MQRankSum=0.024;QD=11.07;ReadPosRankSum=1.627;SOR=0.575;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,54:120:99:1356,0,2534:29,37,28,26
chr2	42669620	.	T	C	3846.8	PASS	AC=1;AF=0.607;AN=2;DP=10383;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:185,205:390:99:5256,0,4640:111,74,123,82
chr2	42670398	.	A	T	5607.57	PASS	AC=1;AF=0.58;AN=2;DP=10807;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant15-variant16-variant19-variant23-variant24-variant26-variant29-variant31-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:166,180:346:99:4735,0,4181:86,80,93,87
chr2	42719847	.	T	TG	5343.58	PASS	AC=2;AF=1;AN=2;DP=6655;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:6273,421,0:0,0,86,52
chr2	42719860	.	G	GC	6182.35	PASS	AC=2;AF=1;AN=2;DP=7844;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,158:158:99:6911,475,0:0,0,99,59
chr2	42721773	.	T	C	1328.48	PASS	AC=2;AF=0.77;AN=2;DP=4658;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,123:123:99:3663,368,0:0,0,76,47
chr2	42722048	.	A	G	433.64	PASS	AC=2;AF=0.77;AN=2;DP=2115;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2166,210,0:0,0,32,38
chr2	42722369	.	T	C	189.54	PASS	AC=1;AF=0.533;AN=2;DP=344;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant19-variant22-variant26-variant29-variant31-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:286,0,393:8,10,7,6
chr2	42722410	.	T	A	101.97	PASS	AC=2;AF=0.77;AN=2;DP=607;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:655,66,0:0,0,8,14
chr2	42795716	.	A	C	231.01	PASS	AC=2;AF=0.988;AN=2;DP=455;FS=0;MQ=60;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:531,36,0:0,0,9,3
chr2	42795719	.	A	C	276.01	PASS	AC=2;AF=0.988;AN=2;DP=491;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:39:556,39,0:0,0,9,3
chr2	42795727	.	T	C	278.33	PASS	AC=2;AF=1;AN=2;DP=562;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:51:695,51,0:0,0,11,5
chr2	42795954	.	T	C	2610.68	PASS	AC=2;AF=1;AN=2;DP=5724;FS=0;MQRankSum=0.144;ReadPosRankSum=0.808;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:2843,307,0:0,0,50,53
chr2	42836516	.	A	G	841.27	PASS	AC=2;AF=0.816;AN=2;DP=867;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:1003,72,0:0,0,22,2
chr2	42922888	.	AT	A	449.39	PASS	AC=1;AF=0.63;AN=2;DP=1303;MQ=60;set=variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant27-variant29-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:197,0,433:11,9,7,4
chr2	42925079	.	TTTC	T	325.67	PASS	AC=1;AF=0.583;AN=2;DP=130;MQ=60;set=variant2-variant6-variant14-variant26-variant29-variant31-variant34-variant35-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:105,0,285:0,7,1,2
chr2	42931217	.	A	C	236.14	PASS	AC=2;AF=0.771;AN=2;DP=653;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:47:579,47,0:0,0,13,3
chr2	42935961	.	C	T	527.89	PASS	AC=2;AF=0.743;AN=2;DP=2556;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1644,165,0:0,0,34,21
chr2	42935979	.	C	T	617.89	PASS	AC=2;AF=0.743;AN=2;DP=2839;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1654,182,0:0,0,36,25
chr2	42936419	.	G	GA	2088.9	PASS	AC=2;AF=0.757;AN=2;DP=7767;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:4,168:172:99:4651,414,0:3,1,80,88
chr2	42936547	.	A	C	3820.91	PASS	AC=2;AF=0.757;AN=2;DP=7688;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:6211,561,0:0,0,97,90
chr2	42981990	.	C	T	1595.19	PASS	AC=1;AF=0.652;AN=2;DP=2877;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,58:94:99:1549,0,876:21,15,28,30
chr2	42983004	.	T	C	1769.49	PASS	AC=1;AF=0.652;AN=2;DP=3048;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,51:94:99:1420,0,1205:18,25,21,30
chr2	42989744	.	G	C	1240.22	PASS	AC=1;AF=0.652;AN=2;DP=3198;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,47:116:99:1042,0,1770:37,32,28,19
chr2	42989994	.	G	T	1381.82	PASS	AC=1;AF=0.577;AN=2;DP=1911;MQ=60;set=variant2-variant13-variant14-variant19-variant23-variant30-variant31-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,61:133:99:1747,0,1994:45,27,37,24
chr2	42990010	.	C	A	1601.53	PASS	AC=1;AF=0.577;AN=2;DP=2285;MQ=60;set=variant2-variant13-variant14-variant19-variant23-variant30-variant31-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,75:168:99:1893,0,2488:58,35,50,25
chr2	42990101	.	G	C	4600.08	PASS	AC=1;AF=0.577;AN=2;DP=4495;MQ=60;set=variant2-variant13-variant14-variant19-variant23-variant30-variant31-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,162:352:99:3675,0,4663:99,91,83,79
chr2	42990336	.	T	G	1418.96	PASS	AC=1;AF=0.652;AN=2;DP=4554;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,69:156:99:1950,0,2411:48,39,34,35
chr2	42990522	.	C	T	1990.22	PASS	AC=1;AF=0.577;AN=2;DP=3277;MQ=60;set=variant2-variant13-variant14-variant19-variant23-variant30-variant31-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,135:269:99:3153,0,3364:61,73,63,72
chr2	42991468	.	G	C	175.24	PASS	AC=1;AF=0.577;AN=2;DP=383;FractionInformativeReads=1;MQ=60;set=variant2-variant13-variant14-variant19-variant23-variant30-variant31-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:500,0,567:3,14,4,13
chr2	42994853	.	G	C	461.89	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=3.704;FractionInformativeReads=1;MQ=60;MQRankSum=-0.919;QD=7.11;ReadPosRankSum=0.624;SOR=0.825;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,21:65:99:490,0,1253:25,19,9,12
chr2	42996709	.	ATGTGTGTGTGTG	A,ATG,ATGTG,ATGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTGTGTG,ATGTGTG,ATGTGTGTGTGTGTGTG	392.62	PASS	AC=1,1,0,0,0,0,0;AF=0.244,0.195,0.293,0.037,0.012,0.012,0.024;AN=2;DP=1120;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/2:30:99:0,0,22,8
chr2	42996759	.	AAGAG	A	481.76	PASS	AC=2;AF=0.789;AN=2;DP=1681;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:2034,139,0:0,0,27,19
chr2	42996819	.	G	A	518.09	PASS	AC=1;AF=0.563;AN=2;DP=1231;MQ=60;set=variant-variant4-variant6-variant7-variant10-variant11-variant12-variant19-variant21-variant29-variant35-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,41:78:99:1096,0,1038:18,19,21,20
chr2	42997614	.	G	A	828.48	PASS	AC=2;AF=0.638;AN=2;DP=2727;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2377,251,0:0,0,53,31
chr2	43011169	.	G	T	329.82	PASS	AC=2;AF=0.729;AN=2;DP=1324;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1654,165,0:0,0,18,38
chr2	43015612	.	G	T	921.96	PASS	AC=2;AF=0.817;AN=2;DP=2653;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1822,172,0:0,0,38,20
chr2	43015704	.	T	A	1641.94	PASS	AC=1;AF=0.528;AN=2;DP=2353;MQ=60;set=variant2-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant28-variant30-variant31-variant33-variant34-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,58:128:99:1228,0,1595:34,36,28,30
chr2	43015719	.	T	C	2030.08	PASS	AC=2;AF=0.817;AN=2;DP=5771;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,131:131:99:3717,392,0:0,0,62,69
chr2	43015757	.	G	A	2165.81	PASS	AC=2;AF=0.817;AN=2;DP=5058;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3510,364,0:0,0,52,70
chr2	43015902	.	G	A	322.92	PASS	AC=2;AF=0.817;AN=2;DP=751;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:440,39,0:0,0,3,10
chr2	43019347	.	G	C	928.19	PASS	AC=2;AF=0.817;AN=2;DP=970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:757,66,0:0,0,16,6
chr2	43019364	.	G	C	1230.02	PASS	AC=2;AF=0.817;AN=2;DP=1274;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:884,78,0:0,0,19,7
chr2	43019730	.	A	G	3543.61	PASS	AC=2;AF=0.81;AN=2;DP=4965;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3050,280,0:0,0,34,60
chr2	43451130	.	GT	G,GTTT	393.63	PASS	AC=1,0;AF=0.489,0.011;AN=2;DP=5708;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-variant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:120:99:35,52,18,15
chr2	43625078	.	T	C	512.17	PASS	AC=2;AF=0.64;AN=2;DP=735;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant13-variant14-variant15-variant19-variant21-variant22-variant23-variant25-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:1097,98,0:0,0,24,9
chr2	43625184	.	T	A	1160.22	PASS	AC=2;AF=0.609;AN=2;DP=1867;MQ=60;set=variant-variant2-variant8-variant10-variant11-variant13-variant14-variant15-variant21-variant22-variant23-variant25-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2517,240,0:0,0,41,39
chr2	43657510	.	T	A	137.68	PASS	AC=2;AF=0.64;AN=2;DP=418;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant13-variant14-variant15-variant19-variant21-variant22-variant23-variant25-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:814,60,0:0,0,1,19
chr2	43732958	.	C	T	106.61	PASS	AC=2;AF=0.591;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant11-variant14-variant15-variant21-variant22-variant23-variant25-variant28-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:578,42,0:0,0,1,13
chr2	43791363	.	C	T	2349.19	PASS	AC=2;AF=0.721;AN=2;DP=5523;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,190:190:99:6303,570,0:0,0,65,125
chr2	43792570	.	CA	C,CAA	366.94	PASS	AC=1,0;AF=0.422,0.078;AN=2;DP=1288;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-filterInvariant11-filterInvariant13-variant14-variant16-variant19-variant22-variant23-filterInvariant25-variant26-variant27-variant28-variant29-variant31-variant32-filterInvariant34-filterInvariant35-variant36-variant37-variant39-variant40-variant41-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:33:99:17,3,10,3
chr2	43799070	.	C	T	148.53	PASS	AC=2;AF=0.917;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,0,3
chr2	43802261	.	C	A	235.31	PASS	AC=2;AF=1;AN=2;DP=318;FS=0;MQ=60;MQRankSum=0.731;ReadPosRankSum=0.731;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:660,45,0:0,0,0,15
chr2	43820156	.	TA	T	875.87	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=3.363;FractionInformativeReads=0.956;MQ=60;MQRankSum=-0.164;QD=12.88;ReadPosRankSum=-1.954;SOR=0.389;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,30:65:99:913,0,1111:13,22,14,16
chr2	43820201	.	T	C	636.09	PASS	AC=2;AF=0.595;AN=2;DP=672;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant9-variant11-variant13-variant15-variant21-variant25-variant28-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1451,138,0:0,0,15,31
chr2	43864526	.	A	G	1061.41	PASS	AC=2;AF=0.757;AN=2;DP=2413;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1919,186,0:0,0,34,28
chr2	43864555	.	T	C	706.65	PASS	AC=2;AF=0.757;AN=2;DP=2002;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1652,173,0:0,0,29,29
chr2	43871983	.	T	C	1573.86	PASS	AC=2;AF=0.757;AN=2;DP=2139;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1386,137,0:0,0,19,27
chr2	43872032	.	A	G	180.02	PASS	AC=2;AF=0.583;AN=2;DP=582;MQ=60;set=variant-variant2-variant4-variant13-variant15-variant17-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:879,78,0:0,0,9,17
chr2	43902511	.	G	C	2120.68	PASS	AC=2;AF=0.78;AN=2;DP=2308;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1601,158,0:0,0,35,18
chr2	43903066	.	A	G	3874.81	PASS	AC=2;AF=0.78;AN=2;DP=4997;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3643,318,0:0,0,51,55
chr2	43903354	.	T	C	5603.01	PASS	AC=2;AF=0.768;AN=2;DP=6587;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,171:171:99:5194,512,0:0,0,92,79
chr2	43903483	.	T	C	2633.33	PASS	AC=2;AF=0.78;AN=2;DP=3620;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2610,216,0:0,0,18,54
chr2	43905898	.	G	GAGGTGGAGGTGC	235.58	PASS	AC=2;AF=0.606;AN=2;DP=597;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:57:782,57,0:0,0,6,12
chr2	43921489	.	A	T	488.03	PASS	AC=2;AF=0.662;AN=2;DP=939;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1126,102,0:0,0,24,10
chr2	43924417	.	C	T	1072.79	PASS	AC=1;AF=0.5;AN=2;DP=106;FS=1.562;FractionInformativeReads=1;MQ=60;MQRankSum=-1.457;QD=10.12;ReadPosRankSum=-2.047;SOR=0.883;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,49:106:99:1101,0,1350:27,30,21,28
chr2	43926943	.	T	A	1424.45	PASS	AC=2;AF=0.662;AN=2;DP=4440;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:4054,362,0:0,0,59,62
chr2	43931055	.	CTTTTTTTTT	CTTT,CTT,CT,CTTTT,C,CTTTTT,CTTTTTTT,CTTTTTT	122.74	PASS	AC=1,0,0,0,0,0,0,0;AF=0.13,0.174,0.065,0.087,0.022,0.022,0.043,0.022;AN=2;DP=390;set=variant-variant2-variant4-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant26-variant27-variant31-variant32-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:25:89:4,2,13,6
chr2	43931176	.	T	C	1474.32	PASS	AC=2;AF=0.662;AN=2;DP=3392;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:3011,288,0:0,0,43,53
chr2	43931321	.	G	A	533.84	PASS	AC=2;AF=0.662;AN=2;DP=1157;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1109,99,0:0,0,10,23
chr2	43947944	.	A	G	458.56	PASS	AC=1;AF=0.54;AN=2;DP=508;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant21-variant24-variant25-variant26-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:477,0,299:1,9,2,12
chr2	43953664	.	A	G	572.26	PASS	AC=1;AF=0.645;AN=2;DP=1044;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,17:30:99:513,0,350:2,11,4,13
chr2	43965700	.	G	GT	138.73	PASS	AC=1;AF=0.5;AN=2;DP=109;MQ=60;set=variant-variant9-variant24-variant25-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:158,0,143:1,6,1,6
chr2	43968167	.	G	A	1250.84	PASS	AC=1;AF=0.5;AN=2;DP=1175;MQ=60;set=variant-variant9-variant24-variant25-variant29-variant33-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:67,69:136:99:1648,0,1571:33,34,33,36
chr2	43968331	.	G	A	262.34	PASS	AC=1;AF=0.5;AN=2;DP=178;MQ=60;set=variant-variant9-variant24-variant25-variant29-variant33-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:330,0,328:0,10,0,9
chr2	43971292	.	C	T	269.4	PASS	AC=1;AF=0.5;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant24-variant25-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:215,0,350:0,9,2,5
chr2	43985940	.	C	A	68.89	PASS	AC=1;AF=0.55;AN=2;DP=316;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant13-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:331,0,373:10,1,9,2
chr2	43991310	.	C	T	86.93	PASS	AC=1;AF=0.556;AN=2;DP=170;MQ=60;set=variant-variant4-variant6-variant11-variant13-variant14-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:159,0,111:3,0,4,0
chr2	43991357	.	A	C	686.62	PASS	AC=2;AF=0.791;AN=2;DP=1259;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:837,78,0:0,0,18,8
chr2	43993448	.	G	C	1117.25	PASS	AC=1;AF=0.568;AN=2;DP=1390;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant13-variant14-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,20:61:99:474,0,1128:22,19,10,10
chr2	43994697	.	T	A	1008.69	PASS	AC=1;AF=0.568;AN=2;DP=1960;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant13-variant14-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,41:101:99:1098,0,1664:21,39,12,29
chr2	44004010	.	T	C	1723.04	PASS	AC=1;AF=0.558;AN=2;DP=3030;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant13-variant14-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,57:118:99:1305,0,1505:27,34,27,30
chr2	44010620	.	G	A	1196.05	PASS	AC=1;AF=0.58;AN=2;DP=2119;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant13-variant14-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,39:86:99:927,0,1058:24,23,25,14
chr2	44021826	.	T	A	4049.6	PASS	AC=1;AF=0.58;AN=2;DP=7467;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant13-variant14-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:185,153:338:99:3886,0,4643:101,84,85,68
chr2	44022419	.	C	T	202.42	PASS	AC=1;AF=0.542;AN=2;DP=111;FS=0;FractionInformativeReads=1;set=variant-variant9-variant17-variant24-variant25-variant29-variant33-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:66:66,0,237:0,6,0,2
chr2	44028013	.	A	T	976.77	PASS	AC=1;AF=0.542;AN=2;DP=1584;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant13-variant14-variant17-variant20-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,39:60:99:896,0,537:11,10,20,19
chr2	44032084	.	G	C	296.99	PASS	AC=1;AF=0.536;AN=2;DP=468;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant17-variant22-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:473,0,709:13,11,14,3
chr2	44032189	.	C	G	736.82	PASS	AC=1;AF=0.536;AN=2;DP=1058;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant17-variant22-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,39:82:99:961,0,1001:22,21,20,19
chr2	44036689	.	A	G	181.96	PASS	AC=2;AF=0.6;AN=2;DP=209;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant17-variant22-variant23-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:622,42,0:0,0,14,0
chr2	44036800	.	A	G	1118.75	PASS	AC=2;AF=0.6;AN=2;DP=1279;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant17-variant22-variant23-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2706,290,0:0,0,51,46
chr2	44036922	.	T	C	2683.24	PASS	AC=2;AF=0.6;AN=2;DP=2024;MQ=60;set=variant-variant9-variant17-variant22-variant23-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4565,417,0:0,0,79,60
chr2	44039633	.	G	A	322.58	PASS	AC=1;AF=0.536;AN=2;DP=318;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant17-variant22-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:494,0,354:8,4,13,6
chr2	44039839	.	C	T	1093.28	PASS	AC=1;AF=0.536;AN=2;DP=1165;MQ=60;set=variant-variant9-variant17-variant22-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,30:71:99:806,0,1147:20,21,15,15
chr2	44039875	.	A	C	1529.38	PASS	AC=1;AF=0.58;AN=2;DP=2765;MQ=60;set=variant-variant4-variant6-variant9-variant11-variant13-variant14-variant17-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,43:91:99:1212,0,1305:25,23,21,22
chr2	44040401	.	G	C	945.58	PASS	AC=1;AF=0.536;AN=2;DP=1183;MQ=60;set=variant-variant9-variant17-variant22-variant24-variant25-variant27-variant29-variant33-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,15:70:99:334,0,1621:22,33,5,10
chr2	44049872	.	C	T	1094.34	PASS	AC=1;AF=0.5;AN=2;DP=494;FractionInformativeReads=1;MQ=60;set=variant3-variant16-variant28-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:782,0,977:22,19,21,16
chr2	44055446	.	G	A	174.84	PASS	AC=1;AF=0.574;AN=2;DP=545;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant16-variant19-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:76:76,0,197:2,4,2,3
chr2	44055527	.	T	C	45.63	PASS	AC=1;AF=0.661;AN=2;DP=262;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant34-variant35-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:75:79,0,75:2,0,2,1
chr2	44079004	.	T	C	239.53	PASS	AC=1;AF=0.676;AN=2;DP=2189;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,36:66:99:1018,0,934:6,24,11,25
chr2	44079606	.	G	A	946.89	PASS	AC=1;AF=0.571;AN=2;DP=677;MQ=60;set=variant10-variant11-variant14-variant16-variant25-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,42:95:99:1004,0,1507:33,20,22,20
chr2	44079671	.	C	T	1164.66	PASS	AC=1;AF=0.571;AN=2;DP=878;MQ=60;set=variant10-variant11-variant14-variant16-variant25-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,58:127:99:1402,0,1713:35,34,33,25
chr2	44080242	.	A	G	166.6	PASS	AC=1;AF=0.583;AN=2;DP=81;MQ=60;set=variant11-variant14-variant16-variant25-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:184,0,259:2,7,1,5
chr2	44080310	.	C	T	37.74	PASS	AC=1;AF=0.6;AN=2;DP=46;FractionInformativeReads=1;MQ=60;set=variant11-variant16-variant25-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:60:60,0,120:1,3,2,1
chr2	44080324	.	A	G	114.75	PASS	AC=1;AF=0.563;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant6-variant16-variant22-variant25-variant29-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,123:1,3,1,1
chr2	44080339	.	T	A	129.4	PASS	AC=1;AF=0.625;AN=2;DP=30;FS=0;FractionInformativeReads=1;MQ=60;set=variant16-variant25-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:62:62,0,119:1,3,1,1
chr2	44099057	.	A	G	408.32	PASS	AC=1;AF=0.571;AN=2;DP=185;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant14-variant16-variant25-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:466,0,449:12,1,12,3
chr2	44099433	.	C	A	2557.26	PASS	AC=1;AF=0.538;AN=2;DP=2847;MQ=60;set=variant3-variant5-variant10-variant15-variant16-variant22-variant28-variant31-variant33-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,107:198:99:2811,0,2397:30,61,35,72
chr2	44099582	.	G	A	447.39	PASS	AC=1;AF=0.538;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant10-variant15-variant16-variant22-variant28-variant31-variant33-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:249,0,362:2,10,0,7
chr2	44100849	.	T	C	1135.51	PASS	AC=1;AF=0.545;AN=2;DP=1104;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant14-variant16-variant22-variant25-variant27-variant31-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,52:91:99:1326,0,1001:23,16,26,26
chr2	44100871	.	G	A	1157.93	PASS	AC=1;AF=0.556;AN=2;DP=916;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant14-variant16-variant25-variant27-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,49:89:99:1327,0,967:24,16,24,25
chr2	44101214	.	CA	C	1285.91	PASS	AC=2;AF=0.895;AN=2;DP=1589;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1320,99,0:0,0,6,27
chr2	44101229	.	A	G	497.14	PASS	AC=1;AF=0.571;AN=2;DP=184;MQ=60;set=variant3-variant5-variant15-variant22-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:511,0,373:1,10,2,13
chr2	44101394	.	A	G	163.44	PASS	AC=2;AF=0.838;AN=2;DP=297;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:251,18,0:0,0,6,0
chr2	44101538	.	C	T	904.47	PASS	AC=1;AF=0.771;AN=2;DP=2520;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,53:91:99:1318,0,856:23,15,31,22
chr2	44101649	.	G	GC,GCCC,GCC	1292.76	PASS	AC=0,1,0;AF=0.476,0.226,0.119;AN=2;DP=2017;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:64:99:12,19,10,23
chr2	44101711	.	T	C	157.44	PASS	AC=1;AF=0.545;AN=2;DP=419;MQ=60;set=variant2-variant4-variant5-variant9-variant10-variant11-variant14-variant16-variant18-variant21-variant25-variant26-variant28-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:193,0,435:2,11,1,5
chr2	44102197	.	T	C	609.94	PASS	AC=1;AF=0.5;AN=2;DP=445;MQ=60;set=variant-variant21-variant25-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,27:68:99:738,0,1063:25,16,21,6
chr2	44102491	.	C	T	864.12	PASS	AC=1;AF=0.556;AN=2;DP=733;MQ=60;set=variant4-variant12-variant13-variant15-variant16-variant19-variant20-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,34:73:99:994,0,1132:14,25,8,26
chr2	44104925	.	T	C	7565.61	PASS	AC=2;AF=0.826;AN=2;DP=10669;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,224:224:99:6727,670,0:0,0,101,123
chr2	44115183	.	T	A	132.16	PASS	AC=1;AF=0.542;AN=2;DP=492;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant10-variant17-variant21-variant25-variant32-variant33-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:358,0,607:9,12,8,5
chr2	44116836	.	C	T	1801.87	PASS	AC=1;AF=0.683;AN=2;DP=3123;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,54:102:99:1250,0,1012:24,24,30,24
chr2	44117435	.	C	A	4358.95	PASS	AC=1;AF=0.5;AN=2;DP=392;FS=3.223;FractionInformativeReads=1;MQ=60;MQRankSum=1.728;QD=11.12;ReadPosRankSum=-1.886;SOR=0.86;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:209,183:392:99:4387,0,4878:96,113,77,106
chr2	44117563	.	A	C	1130.82	PASS	AC=1;AF=0.545;AN=2;DP=548;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant10-variant21-variant25-variant32-variant33-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,24:43:99:824,0,650:0,19,2,22
chr2	44121928	.	T	C	201.22	PASS	AC=1;AF=0.563;AN=2;DP=56;FS=0;FractionInformativeReads=1;MQ=60;set=variant17-variant21-variant25-variant32-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:28:166,0,28:0,1,1,4
chr2	44123758	.	G	A	974.72	PASS	AC=1;AF=0.542;AN=2;DP=924;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant10-variant17-variant21-variant25-variant32-variant33-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,50:84:99:1308,0,798:21,13,31,19
chr2	44126747	.	G	A	887.48	PASS	AC=1;AF=0.5;AN=2;DP=164;FractionInformativeReads=1;MQ=60;set=variant16-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:430,0,835:10,21,9,13
chr2	44139474	.	A	G	161.44	PASS	AC=1;AF=0.545;AN=2;DP=132;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant10-variant17-variant21-variant25-variant32-variant33-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:22:241,0,22:1,1,6,1
chr2	44152058	.	A	G	676.99	PASS	AC=1;AF=0.545;AN=2;DP=685;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant10-variant21-variant25-variant32-variant33-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:727,0,971:22,14,18,10
chr2	44152180	.	G	A	2885.92	PASS	AC=1;AF=0.717;AN=2;DP=3055;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,34:92:99:808,0,1534:30,28,14,20
chr2	44152995	.	C	G	1909.5	PASS	AC=1;AF=0.545;AN=2;DP=1466;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant10-variant21-variant25-variant32-variant33-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,63:127:99:1560,0,1446:32,32,28,35
chr2	44161854	.	GA	GAA,G	556	PASS	AC=0,1;AF=0.563,0.031;AN=2;DP=810;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant18-variant22-variant23-variant26-variant27-variant31-variant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:44:99:16,8,13,7
chr2	44175011	.	A	T	309.7	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.112;QD=7.2;ReadPosRankSum=-0.236;SOR=0.724;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,17:43:99:338,0,562:11,15,7,10
chr2	44187652	.	A	G	1203.6	PASS	AC=1;AF=0.545;AN=2;DP=1223;MQ=60;set=variant-variant5-variant10-variant21-variant25-variant32-variant33-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,71:108:99:1590,0,842:23,14,37,34
chr2	44187829	.	A	C	432.64	PASS	AC=2;AF=0.807;AN=2;DP=2201;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1268,120,0:0,0,12,28
chr2	44204017	.	C	G	211.45	PASS	AC=1;AF=0.545;AN=2;DP=146;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant10-variant21-variant25-variant32-variant33-variant34-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:211,0,306:7,4,6,1
chr2	44209477	.	C	T	818.13	PASS	AC=2;AF=0.807;AN=2;DP=2931;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2021,201,0:0,0,35,32
chr2	44222881	.	C	A	215.22	PASS	AC=1;AF=0.556;AN=2;DP=131;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant21-variant25-variant32-variant33-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:128,0,269:6,2,4,2
chr2	44396235	.	T	G	3526.53	PASS	AC=1;AF=0.864;AN=2;DP=4903;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:66,61:127:99:1519,0,1654:27,39,29,32
chr2	44396279	.	C	CCGGAGGCGG	3952.54	PASS	AC=1;AF=0.864;AN=2;DP=4352;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:44,43:87:99:1700,0,2210:22,22,19,24
chr2	44460270	.	G	A	1662.6	PASS	AC=1;AF=0.531;AN=2;DP=1643;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant9-variant10-variant11-variant17-variant20-variant23-variant24-variant33-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,60:115:99:1699,0,1427:19,36,22,38
chr2	44461672	.	G	A	54.06	PASS	AC=1;AF=0.571;AN=2;DP=73;set=variant2-variant10-variant11-variant13-variant24-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:141,0,214:4,1,4,2
chr2	44471313	.	GA	G	47.35	PASS	AC=1;AF=0.8;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant10-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:86:86,0,111:3,2,2,2
chr2	44471326	.	CAT	C	76.65	PASS	AC=1;AF=0.792;AN=2;DP=70;FS=0;MQ=60;set=variant2-variant6-variant9-variant10-variant20-variant23-variant24-variant33-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:192,0,190:4,2,4,2
chr2	44471409	.	T	G	538.19	PASS	AC=1;AF=0.533;AN=2;DP=501;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant9-variant10-variant11-variant20-variant23-variant24-variant33-variant34-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:572,0,321:7,5,13,7
chr2	44502788	.	A	C	4137.5	PASS	AC=1;AF=0.821;AN=2;DP=8919;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:130,118:248:99:2779,0,2987:64,66,63,55
chr2	44508095	.	T	C	927.67	PASS	AC=1;AF=0.5;AN=2;DP=200;MQ=60;set=variant23-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,12:48:99:274,0,1106:12,24,3,9
chr2	44541857	.	C	G	433.22	PASS	AC=1;AF=0.583;AN=2;DP=316;MQ=60;set=variant6-variant9-variant10-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:717,0,609:10,11,11,14
chr2	44542061	.	ATT	ATTT,ATTTT,AT,A	107.94	PASS	AC=0,0,0,1;AF=0.348,0.13,0.022,0.022;AN=2;DP=993;set=variant-filterInvariant2-variant3-variant4-variant7-variant8-filterInvariant11-variant13-filterInvariant19-filterInvariant20-variant22-filterInvariant26-variant27-variant30-variant31-variant35-variant36-filterInvariant37-variant38-variant39-filterInvariant40-filterInvariant41-variant42	GT:DP:GQ:SB	0/4:11:86:3,4,0,4
chr2	44548282	.	T	C	514.42	PASS	AC=1;AF=0.818;AN=2;DP=1510;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:490,0,398:6,9,7,11
chr2	44569474	.	G	A	94.47	PASS	AC=1;AF=0.774;AN=2;DP=842;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:198,0,441:11,2,6,0
chr2	44571109	.	G	A	359.73	PASS	AC=1;AF=0.6;AN=2;DP=105;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant10-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:306,0,341:0,9,0,8
chr2	44571849	.	G	A	213.17	PASS	AC=1;AF=0.583;AN=2;DP=65;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant10-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:222,0,135:0,4,1,6
chr2	44573624	.	G	A	257.58	PASS	AC=1;AF=0.774;AN=2;DP=778;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:467,0,288:3,7,3,12
chr2	44573658	.	T	C	121.67	PASS	AC=1;AF=0.803;AN=2;DP=341;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:272,0,182:1,4,2,7
chr2	44573671	.	G	T	115.73	PASS	AC=1;AF=0.838;AN=2;DP=240;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:240,0,143:1,3,0,6
chr2	44586621	.	T	C	132.11	PASS	AC=1;AF=0.583;AN=2;DP=69;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant10-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:227,0,181:5,0,6,1
chr2	44617324	.	T	A	662.58	PASS	AC=1;AF=0.813;AN=2;DP=2204;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,25:44:99:612,0,486:13,6,16,9
chr2	44622226	.	G	C	252.08	PASS	AC=1;AF=0.583;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant10-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:198,0,108:1,3,2,5
chr2	44858687	.	T	C	650.99	PASS	AC=1;AF=0.764;AN=2;DP=1665;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,19:52:99:443,0,800:21,12,13,6
chr2	44942384	.	C	G	385.11	PASS	AC=1;AF=0.684;AN=2;DP=1742;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:527,0,586:14,11,14,8
chr2	44999603	.	AT	A,ATT	1014.3	PASS	AC=1,0;AF=0.489,0.011;AN=2;DP=14333;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:254:99:101,101,25,27
chr2	45170153	.	G	A	517.33	PASS	AC=1;AF=0.571;AN=2;DP=1111;MQ=60;set=variant-variant3-variant6-variant8-variant11-variant13-variant14-variant15-variant17-variant18-variant22-variant23-variant25-variant26-variant27-variant32-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,27:55:99:651,0,768:9,19,8,19
chr2	45171842	.	A	G	5168.89	PASS	AC=1;AF=0.953;AN=2;DP=10168;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,96:213:99:2291,0,2812:64,53,53,43
chr2	45172258	.	C	T	757.45	PASS	AC=1;AF=0.5;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant8-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:451,0,420:8,10,7,10
chr2	45172449	.	TAAAAA	TAA,T,TAAAA,TAAA,TA	165.18	PASS	AC=0,0,1,1,0;AF=0.3,0.12,0.08,0.08,0.1;AN=2;DP=268;set=variant-variant2-variant6-variant8-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant38-variant41-variant43	GT:DP:GQ:SB	4/3:10:99:0,0,9,1
chr2	45172501	.	G	A	663.16	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=0;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:691,0,1063:28,2,20,2
chr2	45173082	.	G	C	319.78	PASS	AC=1;AF=0.6;AN=2;DP=167;FractionInformativeReads=1;MQ=60;set=variant8-variant33-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,24:37:99:673,0,426:3,10,7,17
chr2	45232686	.	A	C	427.01	PASS	AC=2;AF=0.852;AN=2;DP=1324;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:956,96,0:0,0,14,18
chr2	45640374	.	C	A	628.5	PASS	AC=1;AF=0.5;AN=2;DP=411;MQ=60;set=variant2-variant7-variant17-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,38:82:99:882,0,1133:19,25,17,21
chr2	45645512	.	C	T	1184.94	PASS	AC=1;AF=0.5;AN=2;DP=729;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant17-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,61:121:99:1534,0,1487:29,31,34,27
chr2	45647043	.	C	G	1242	PASS	AC=1;AF=0.667;AN=2;DP=2659;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,38:85:99:1000,0,1219:16,31,13,25
chr2	45773816	.	C	G	273.32	PASS	AC=2;AF=0.712;AN=2;DP=1207;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1276,108,0:0,0,26,10
chr2	45774050	.	G	A	355.32	PASS	AC=1;AF=0.694;AN=2;DP=1687;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,20:49:99:486,0,869:10,19,6,14
chr2	45774548	.	A	C	2346.2	PASS	AC=2;AF=0.857;AN=2;DP=2823;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2104,213,0:0,0,39,32
chr2	45780962	.	C	G	320.4	PASS	AC=2;AF=0.727;AN=2;DP=1662;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1541,161,0:0,0,23,31
chr2	45790000	.	A	C	328.28	PASS	AC=1;AF=0.5;AN=2;DP=93;FractionInformativeReads=1;MQ=60;set=variant17-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:452,0,369:3,10,5,11
chr2	45801621	.	C	G	703.41	PASS	AC=1;AF=0.5;AN=2;DP=184;FractionInformativeReads=1;MQ=60;set=variant11-variant17-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:599,0,391:10,2,16,1
chr2	45808963	.	CTT	C	1507.07	PASS	AC=1;AF=0.5;AN=2;DP=148;FS=0;MQ=60;set=variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,44:75:99:1744,0,1155:14,17,19,25
chr2	45809059	.	GTC	G	409.24	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=0;MQ=60;set=variant17-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:691,0,566:5,10,7,11
chr2	45826526	.	CT	C	3234.74	PASS	AC=1;AF=0.778;AN=2;DP=3078;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:1193,0,1234:23,14,20,15
chr2	45879610	.	A	G	441.08	PASS	AC=2;AF=0.864;AN=2;DP=742;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:660,45,0:0,0,3,12
chr2	46203796	.	G	C,A	2418.97	PASS	AC=0,1;AF=0.449,0.256;AN=2;DP=2485;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:66:99:7,22,12,25
chr2	46205925	.	A	G	108.52	PASS	AC=1;AF=0.619;AN=2;DP=232;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant11-variant12-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant30-variant32-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:67:67,0,205:5,1,1,2
chr2	46207567	.	C	T	1887.98	PASS	AC=1;AF=0.542;AN=2;DP=1588;MQ=60;set=variant3-variant18-variant19-variant22-variant25-variant26-variant30-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,74:136:99:1760,0,1553:30,32,31,43
chr2	46227925	.	C	G	186.11	PASS	AC=1;AF=0.563;AN=2;DP=111;FractionInformativeReads=1;MQ=60;set=variant3-variant18-variant19-variant25-variant26-variant30-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:57:329,0,57:2,2,8,2
chr2	46232042	.	A	C	193.52	PASS	AC=1;AF=0.8;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:68:199,0,68:1,2,1,5
chr2	46234568	.	A	G	1065.32	PASS	AC=1;AF=0.6;AN=2;DP=2413;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant11-variant12-variant15-variant16-variant19-variant26-variant27-variant32-variant33-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,58:118:99:1307,0,1454:36,24,31,27
chr2	46237446	.	C	A	634.59	PASS	AC=1;AF=0.575;AN=2;DP=1445;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant10-variant13-variant14-variant15-variant17-variant21-variant22-variant24-variant28-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,36:79:99:849,0,927:24,19,23,13
chr2	46238244	.	A	G	1757.73	PASS	AC=2;AF=0.93;AN=2;DP=1271;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1170,87,0:0,0,1,28
chr2	46378419	.	TACACACAC	TACACACACAC,TACACAC,TACAC,TAC,TACACACACACAC,TACACACACACACAC,T,TACACACACACACACAC	491.57	PASS	AC=1,0,0,1,0,0,0,0;AF=0.288,0.063,0.2,0.088,0.05,0.038,0.075,0.013;AN=2;DP=1964;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/1:25:99:0,1,5,19
chr2	46583235	.	C	A	123.2	PASS	AC=1;AF=0.703;AN=2;DP=331;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:189,0,196:4,3,5,0
chr2	46584059	.	T	G	272.24	PASS	AC=1;AF=0.5;AN=2;DP=187;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant14-variant15-variant24-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:627,0,298:1,9,3,16
chr2	46602678	.	C	A	202.45	PASS	AC=1;AF=0.696;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant9-variant11-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:164,0,367:9,2,5,0
chr2	46602722	.	T	C	410.25	PASS	AC=1;AF=0.672;AN=2;DP=696;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,9:27:99:258,0,481:12,6,7,2
chr2	46603671	.	C	G	2475.81	PASS	AC=1;AF=0.667;AN=2;DP=3936;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,62:142:99:1384,0,2043:43,37,32,30
chr2	46605659	.	A	G	798.43	PASS	AC=1;AF=0.75;AN=2;DP=516;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:268,0,278:8,0,6,2
chr2	46605954	.	G	C	2044.17	PASS	AC=1;AF=0.682;AN=2;DP=2517;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,37:76:99:972,0,1031:12,27,10,27
chr2	46608542	.	C	G	199.22	PASS	AC=1;AF=0.71;AN=2;DP=630;MQ=60;set=variant-variant2-variant4-variant5-variant9-variant10-variant11-variant13-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:258,0,323:8,3,5,2
chr2	46612326	.	GTT	G,GT	10765.4	PASS	AC=1,1;AF=0.683,0.134;AN=2;DP=16130;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:336:99:18,1,156,161
chr2	46612641	.	A	C	750.39	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=4.821;FractionInformativeReads=1;MQ=60;MQRankSum=0.128;QD=18.76;ReadPosRankSum=0.468;SOR=0.243;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,26:40:99:779,0,428:4,10,12,14
chr2	46707808	.	C	CAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGGG	1967.42	PASS	AC=1;AF=0.719;AN=2;DP=8832;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,54:116:99:2857,0,9117:30,32,24,30
chr2	46708129	.	C	G	93.22	PASS	AC=1;AF=0.717;AN=2;DP=690;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:382,0,361:4,10,3,10
chr2	46738846	.	T	C	1422.34	PASS	AC=1;AF=0.707;AN=2;DP=1178;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:527,0,500:13,3,15,3
chr2	46738891	.	A	G	2209.77	PASS	AC=1;AF=0.707;AN=2;DP=2434;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,29:67:99:882,0,976:25,13,23,6
chr2	46739157	.	A	G	7485.27	PASS	AC=1;AF=0.707;AN=2;DP=6380;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,94:213:99:2042,0,3053:63,56,46,48
chr2	46746256	.	G	A	700.03	PASS	AC=1;AF=0.685;AN=2;DP=1010;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant31-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:360,0,664:10,14,7,10
chr2	46746675	.	G	A	8008.89	PASS	AC=1;AF=0.685;AN=2;DP=4335;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant31-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,76:153:99:2951,0,4576:47,30,47,29
chr2	46746682	.	A	G	8460.03	PASS	AC=1;AF=0.93;AN=2;DP=7418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,76:162:99:2891,0,4731:53,33,46,30
chr2	46746963	.	A	G	8509.41	PASS	AC=1;AF=0.679;AN=2;DP=6755;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant31-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,120:238:99:3257,0,3193:38,80,44,76
chr2	46763898	.	T	C	61.77	PASS	AC=2;AF=0.769;AN=2;DP=87;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant11-variant12-variant16-variant20-variant23-variant24-variant27-variant29-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:378,36,0:0,0,5,7
chr2	46768543	.	A	C	722.33	PASS	AC=2;AF=0.893;AN=2;DP=2312;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2072,212,0:0,0,36,35
chr2	46769334	.	ATTT	ATTTTT,AT,ATT,A,ATTTT,ATTTTTT	145.78	PASS	AC=1,0,0,0,0,0;AF=0.173,0.077,0.385,0.019,0.019,0.019;AN=2;DP=386;set=variant8-variant9-variant11-variant13-variant14-filterInvariant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:14:80:3,1,7,3
chr2	46771134	.	G	C	1177.9	PASS	AC=2;AF=0.857;AN=2;DP=1735;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,46:47:95:1621,95,0:0,1,8,38
chr2	46799852	.	G	T	634.44	PASS	AC=2;AF=0.66;AN=2;DP=1062;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant24-variant27-variant28-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1233,117,0:0,0,26,13
chr2	46818992	.	C	T	836.68	PASS	AC=1;AF=0.639;AN=2;DP=1080;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant8-variant9-variant11-variant12-variant16-variant20-variant24-variant27-variant28-variant33-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:516,0,458:9,9,10,10
chr2	46819815	.	A	G	900.88	PASS	AC=2;AF=0.611;AN=2;DP=1745;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant20-variant24-variant27-variant28-variant30-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:1875,192,0:0,0,28,36
chr2	46839477	.	T	C	477.06	PASS	AC=2;AF=0.656;AN=2;DP=377;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant8-variant9-variant12-variant16-variant20-variant24-variant27-variant28-variant33-variant34-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:474,48,0:0,0,10,6
chr2	46840680	.	T	A	102.84	PASS	AC=2;AF=0.7;AN=2;DP=76;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant8-variant16-variant20-variant24-variant33-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:238,27,0:0,0,6,3
chr2	46841861	.	G	T	175.61	PASS	AC=2;AF=0.7;AN=2;DP=135;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant8-variant16-variant20-variant24-variant27-variant28-variant30-variant33-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:316,24,0:0,0,7,1
chr2	46842410	.	A	G	400.47	PASS	AC=2;AF=0.615;AN=2;DP=892;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant20-variant24-variant27-variant28-variant30-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1122,102,0:0,0,10,24
chr2	46844082	.	A	AG	896.71	PASS	AC=2;AF=1;AN=2;DP=1698;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1771,132,0:0,0,31,13
chr2	46844219	.	C	CG	2799.65	PASS	AC=2;AF=1;AN=2;DP=3988;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2976,243,0:0,0,41,39
chr2	46845849	.	A	G	463.91	PASS	AC=2;AF=0.632;AN=2;DP=779;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant8-variant9-variant12-variant16-variant20-variant24-variant27-variant28-variant30-variant33-variant34-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1537,135,0:0,0,22,23
chr2	46852033	.	A	G	6943.94	PASS	AC=2;AF=0.635;AN=2;DP=11222;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant20-variant24-variant27-variant28-variant30-variant33-variant34-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,409:409:99:13181,1225,0:0,0,203,206
chr2	46852120	.	CT	C,CTT	2003.78	PASS	AC=1,0;AF=0.477,0.023;AN=2;DP=15054;set=Intersection	GT:DP:GQ:SB	0/1:269:99:63,87,51,68
chr2	46852210	.	GTT	GT,G	539.83	PASS	AC=1,0;AF=0.456,0.044;AN=2;DP=4717;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant12-variant13-filterInvariant15-filterInvariant16-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:80:99:8,29,7,36
chr2	46926064	.	C	G	287.2	PASS	AC=1;AF=0.662;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:98:98,0,528:12,3,5,2
chr2	46926719	.	G	C	94.75	PASS	AC=1;AF=0.632;AN=2;DP=377;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:128,0,191:2,5,1,4
chr2	46986089	.	A	T	1523.2	PASS	AC=1;AF=0.5;AN=2;DP=132;FS=4.195;FractionInformativeReads=0.992;MQ=59.98;MQRankSum=-1.061;QD=11.54;ReadPosRankSum=-1.706;SOR=0.418;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,65:131:99:1551,0,1838:40,26,34,31
chr2	46986416	.	A	G	3598.55	PASS	AC=1;AF=0.568;AN=2;DP=3000;set=variant-variant2-variant4-variant5-variant7-variant8-variant12-variant16-variant18-variant20-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,60:137:99:1497,0,1804:43,34,34,26
chr2	46987300	.	T	G	493.51	PASS	AC=1;AF=0.613;AN=2;DP=531;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:288,0,441:2,10,2,8
chr2	46987935	.	T	G	11097.7	PASS	AC=1;AF=0.567;AN=2;DP=9572;set=variant-variant2-variant4-variant5-variant7-variant8-variant10-variant12-variant15-variant16-variant17-variant18-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,135:287:99:3288,0,3572:82,70,79,56
chr2	46989869	.	T	G	18025.2	PASS	AC=1;AF=0.568;AN=2;DP=11201;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant12-variant16-variant18-variant20-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:285,236:521:99:5857,0,7172:154,131,130,106
chr2	47044277	.	C	T	724.79	PASS	AC=1;AF=0.571;AN=2;DP=710;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:262,0,593:13,5,7,4
chr2	47045267	.	G	A	1257.66	PASS	AC=1;AF=0.671;AN=2;DP=1490;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,13:48:99:286,0,1016:23,12,9,4
chr2	47045309	.	C	T	3112.23	PASS	AC=1;AF=0.571;AN=2;DP=2118;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,34:84:99:1197,0,2357:29,21,22,12
chr2	47045321	.	A	G	3363.85	PASS	AC=1;AF=0.55;AN=2;DP=1755;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant12-variant16-variant18-variant24-variant25-variant26-variant29-variant31-variant33-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,40:92:99:1411,0,2410:28,24,27,13
chr2	47049409	.	C	T	2447.94	PASS	AC=1;AF=0.597;AN=2;DP=3020;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,44:101:99:1102,0,1573:21,36,18,26
chr2	47049453	.	A	G	2094.06	PASS	AC=1;AF=0.692;AN=2;DP=3088;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,41:88:99:1074,0,1261:16,31,22,19
chr2	47132834	.	TAAA	TAA,TAAAA,TAAAAA,TAAAAAA,T	390.36	PASS	AC=1,0,0,0,0;AF=0.19,0.119,0.131,0.119,0.036;AN=2;DP=4679;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:97:99:27,26,26,18
chr2	47133055	.	T	C	3275.17	PASS	AC=1;AF=0.588;AN=2;DP=4344;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant9-variant13-variant15-variant18-variant20-variant23-variant25-variant30-variant32-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:124,139:263:99:3629,0,3043:56,68,68,71
chr2	47139568	.	G	C	901.34	PASS	AC=1;AF=0.7;AN=2;DP=94;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant23-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,17:24:99:484,0,198:6,1,10,7
chr2	47142950	.	GCCCCCCCCC	GCCCC,G,GCCCCCC,GCCCCC,GCCCCCCC,GCCCCCCCC	171.55	PASS	AC=0,2,0,0,0,0;AF=0.117,0.433,0.083,0.1,0.05,0.017;AN=2;DP=1130;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant40-variant41-variant43	GT:DP:GQ:SB	2/2:30:39:0,1,16,13
chr2	47143230	.	G	T	990.64	PASS	AC=1;AF=0.591;AN=2;DP=989;MQ=60;set=variant2-variant3-variant7-variant8-variant15-variant18-variant20-variant23-variant30-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,49:88:99:1199,0,1033:19,20,26,23
chr2	47177787	.	G	T	773.91	PASS	AC=1;AF=0.577;AN=2;DP=646;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant7-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant25-variant26-variant27-variant28-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:278,0,356:1,10,1,8
chr2	47183650	.	T	C	43.48	PASS	AC=2;AF=0.838;AN=2;DP=382;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:357,33,0:0,0,8,3
chr2	47185438	.	G	A	1238.86	PASS	AC=1;AF=0.553;AN=2;DP=1936;MQ=60;set=variant4-variant6-variant10-variant12-variant13-variant14-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant30-variant34-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,38:85:99:1042,0,1236:33,14,30,8
chr2	47201797	.	A	T	599.09	PASS	AC=2;AF=0.821;AN=2;DP=2472;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1427,165,0:0,0,30,25
chr2	47201991	.	CT	C	717.83	PASS	AC=1;AF=0.62;AN=2;DP=397;MQ=60;set=variant3-variant4-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant35-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:89:210,0,89:2,1,0,6
chr2	47220285	.	T	G	127.41	PASS	AC=1;AF=0.625;AN=2;DP=195;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant8-variant11-variant14-variant15-variant17-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:31:157,0,31:1,0,4,0
chr2	47220448	.	C	CT	1074.68	PASS	AC=1;AF=0.605;AN=2;DP=1606;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:1148,0,1278:27,14,24,13
chr2	47220622	.	G	A	1363.32	PASS	AC=1;AF=0.605;AN=2;DP=2587;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,70:130:99:1768,0,1541:26,34,34,36
chr2	47221693	.	A	G	429.54	PASS	AC=1;AF=0.605;AN=2;DP=1451;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant15-variant17-variant18-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,42:79:99:1045,0,977:15,22,14,28
chr2	47222001	.	T	C	51.2	PASS	AC=2;AF=0.625;AN=2;DP=187;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant8-variant11-variant15-variant17-variant18-variant23-variant25-variant26-variant29-variant31-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,2,2
chr2	47250819	.	A	G	1179.29	PASS	AC=1;AF=0.7;AN=2;DP=826;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant16-variant19-variant21-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:459,0,737:5,17,4,13
chr2	47251555	.	G	T	1206.91	PASS	AC=2;AF=0.545;AN=2;DP=1837;MQ=60;set=variant-variant6-variant7-variant11-variant16-variant21-variant29-variant31-variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5002,482,0:0,0,79,82
chr2	47251634	.	T	C	1454.14	PASS	AC=2;AF=0.632;AN=2;DP=3488;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant21-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3181,311,0:0,0,40,64
chr2	47273732	.	G	A	237.08	PASS	AC=1;AF=0.528;AN=2;DP=259;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant8-variant10-variant15-variant17-variant23-variant26-variant28-variant29-variant33-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:188,0,180:1,5,2,5
chr2	47277207	.	C	A	1502.72	PASS	AC=1;AF=0.625;AN=2;DP=4672;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,46:113:99:1709,0,3451:33,34,20,26
chr2	47277208	.	A	G	1502.72	PASS	AC=1;AF=0.625;AN=2;DP=4625;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,45:112:99:1709,0,3451:33,34,20,25
chr2	47301386	.	A	G	2741.19	PASS	AC=2;AF=1;AN=2;DP=3959;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2272,221,0:0,0,34,40
chr2	47301624	.	T	TTGGGGCCTC	2690.3	PASS	AC=2;AF=0.838;AN=2;DP=2490;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2867,195,0:0,0,32,27
chr2	47301744	.	T	C	2659.31	PASS	AC=2;AF=0.833;AN=2;DP=3928;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2722,264,0:0,0,49,39
chr2	47302095	.	T	C	3824.36	PASS	AC=2;AF=0.805;AN=2;DP=4704;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:3061,291,0:0,0,50,47
chr2	47302829	.	C	G	3237.32	PASS	AC=2;AF=0.841;AN=2;DP=3429;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1982,180,0:0,0,31,29
chr2	47314052	.	T	C	1321.99	PASS	AC=2;AF=0.93;AN=2;DP=1384;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1355,132,0:0,0,29,15
chr2	47348347	.	C	T	3276.35	PASS	AC=2;AF=0.826;AN=2;DP=5659;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3235,332,0:0,0,51,60
chr2	47357458	.	A	G	1952.46	PASS	AC=2;AF=0.849;AN=2;DP=3566;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2201,216,0:0,0,25,47
chr2	47357564	.	A	T	297.18	PASS	AC=2;AF=0.779;AN=2;DP=393;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:353,24,0:0,0,0,8
chr2	47380203	.	T	C	1472.2	PASS	AC=2;AF=0.802;AN=2;DP=1897;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1844,183,0:0,0,26,35
chr2	47382214	.	C	G	2567.71	PASS	AC=2;AF=0.989;AN=2;DP=3435;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2439,209,0:0,0,46,24
chr2	47382606	.	T	A	499.66	PASS	AC=2;AF=0.738;AN=2;DP=984;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:583,48,0:0,0,3,13
chr2	47387989	.	CAAAAAAA	CAA,CAAAA,CAAA,C,CAAAAA,CA	102.27	PASS	AC=0,0,1,0,0,0;AF=0.239,0.065,0.304,0.065,0.022,0.022;AN=2;DP=329;set=variant-variant3-variant5-variant7-variant9-variant10-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant31-variant32-variant33-variant36-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/3:4:8:1,0,2,1
chr2	47390026	.	C	T	193.54	PASS	AC=2;AF=0.78;AN=2;DP=152;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant10-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:238,24,0:0,0,3,5
chr2	47399415	.	G	A	585.46	PASS	AC=1;AF=0.545;AN=2;DP=457;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant12-variant15-variant22-variant26-variant28-variant30-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:668,0,880:22,8,18,6
chr2	47612224	.	C	T	376.47	PASS	AC=1;AF=0.614;AN=2;DP=935;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant17-variant26-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,25:49:99:624,0,569:15,9,14,11
chr2	47641559	.	TAAAAAA	TAAA,TAAAAA,T,TAAAA,TA,TAA	280.44	PASS	AC=1,0,0,0,0,0;AF=0.155,0.052,0.034,0.19,0.086,0.138;AN=2;DP=1123;set=variant-variant2-variant3-variant7-variant8-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:17:99:1,6,4,6
chr2	47672569	.	G	A	770.47	PASS	AC=2;AF=0.757;AN=2;DP=596;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:837,60,0:0,0,20,0
chr2	47702451	.	GT	G,GTTT,GTT	60.69	PASS	AC=1,0,0;AF=0.3,0.05,0.15;AN=2;DP=643;set=filterInvariant-variant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant7-variant9-filterInvariant16-variant17-filterInvariant21-variant26-filterInvariant27-variant28-variant32-variant33-filterInvariant38-variant40-variant41-variant42-filterInvariant43	GT:DP:GQ:SB	0/1:12:47:0,5,1,6
chr2	47703379	.	C	T	585.83	PASS	AC=2;AF=0.989;AN=2;DP=511;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.37;ReadPosRankSum=-1.664;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:315,24,0:0,0,8,0
chr2	47709807	.	T	A	31.98	PASS	AC=1;AF=0.5;AN=2;DP=58;MQ=60;set=variant7-variant16-variant22-variant23-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:46:75,0,46:2,0,4,0
chr2	47739551	.	A	G	1176.22	PASS	AC=1;AF=0.7;AN=2;DP=3212;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,64:118:99:1658,0,1285:26,28,28,36
chr2	47740198	.	G	T	132.55	PASS	AC=1;AF=0.694;AN=2;DP=1027;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:529,0,588:12,10,8,13
chr2	47748292	.	A	G	6293.49	PASS	AC=1;AF=0.717;AN=2;DP=5041;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:85,78:163:99:2096,0,2126:41,44,42,36
chr2	47798037	.	A	G	656.51	PASS	AC=2;AF=0.658;AN=2;DP=2085;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1619,168,0:0,0,23,33
chr2	48010558	.	C	A	2898.27	PASS	AC=2;AF=0.55;AN=2;DP=1411;MQ=60;set=variant3-variant7-variant25-variant26-variant27-variant33-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3791,359,0:0,0,40,81
chr2	48010654	.	C	G	1029.19	PASS	AC=2;AF=0.545;AN=2;DP=560;MQ=60;set=variant3-variant7-variant18-variant25-variant26-variant27-variant33-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1381,125,0:0,0,15,27
chr2	48016314	.	T	C	394.37	PASS	AC=2;AF=0.63;AN=2;DP=601;set=variant3-variant6-variant7-variant9-variant12-variant15-variant19-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:624,54,0:0,0,14,4
chr2	48016353	.	G	A	480.22	PASS	AC=2;AF=0.55;AN=2;DP=418;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant25-variant26-variant27-variant33-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1198,111,0:0,0,25,12
chr2	48018081	.	A	G	2070.65	PASS	AC=2;AF=0.55;AN=2;DP=1256;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant25-variant26-variant27-variant33-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,118:119:99:3748,311,0:0,1,64,54
chr2	48018314	.	T	A	518.92	PASS	AC=2;AF=0.636;AN=2;DP=559;set=variant3-variant6-variant7-variant9-variant12-variant15-variant19-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:612,48,0:0,0,2,14
chr2	48022900	.	A	G	34.46	PASS	AC=2;AF=0.821;AN=2;DP=368;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:358,27,0:0,0,8,1
chr2	48023115	.	T	C	1257.01	PASS	AC=2;AF=0.595;AN=2;DP=1142;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant12-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant35-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1457,129,0:0,0,20,23
chr2	48030458	.	G	C	497.3	PASS	AC=2;AF=0.774;AN=2;DP=1660;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2021,173,0:0,0,45,13
chr2	48030838	.	A	T	1459.99	PASS	AC=2;AF=0.54;AN=2;DP=2127;MQ=60;set=variant3-variant5-variant7-variant8-variant13-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:2977,284,0:0,0,35,60
chr2	48032740	.	AT	ATT,A	773.8	PASS	AC=1,0;AF=0.472,0.028;AN=2;DP=1073;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant11-variant14-variant15-variant18-variant21-variant22-variant24-variant27-variant28-variant32-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:49:99:16,11,13,9
chr2	48032874	.	ACTAT	A	1073.15	PASS	AC=2;AF=0.738;AN=2;DP=2321;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:2034,139,0:0,0,18,28
chr2	48032937	.	T	C	410.43	PASS	AC=2;AF=0.762;AN=2;DP=908;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:630,54,0:0,0,4,14
chr2	48033551	.	C	G	1714.99	PASS	AC=2;AF=0.774;AN=2;DP=5220;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3491,326,0:0,0,49,60
chr2	48033890	.	CTTT	CTT,CTTCTTTT,CT,C	367.34	PASS	AC=1,0,0,0;AF=0.446,0.014,0.095,0.027;AN=2;DP=1624;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant19-filterInvariant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:15:96:4,3,5,3
chr2	48034806	.	TA	T	778.96	PASS	AC=2;AF=0.726;AN=2;DP=3626;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:1977,214,0:0,0,25,46
chr2	48040564	.	ATTTTT	ATTTTTTTTTTTTTT,ATTTTTTTTTTTTTTTTTTTTT,ATTTTTTTTTTT,ATTTTTTTTTT,ATTTTTTTTT,ATTT,A,ATTTTTTTTTTTTTTT,ATTTTTTTTTTTTTTTT,ATTTTTTTTTTTTT,ATTTTTTT,ATTTTTTTTTTTT	34.52	PASS	AC=0,0,0,0,0,0,0,0,0,2,0,0;AF=0.067,0.033,0.033,0.067,0.167,0.033,0.033,0.067,0.033,0.1,0.067,0.033;AN=2;DP=238;FS=0;set=variant2-variant7-variant9-variant15-variant16-variant17-variant21-variant23-filterInvariant24-variant27-variant28-variant29-variant36-variant38-variant41	GT:DP:GQ:SB	10/10:3:7:0,0,0,3
chr2	48040904	.	G	GA	1724.48	PASS	AC=2;AF=0.966;AN=2;DP=3270;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2538,246,0:0,0,45,35
chr2	48066232	.	CT	C	35.43	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=0;MQ=60;set=variant3-variant26-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:51:193,0,51:0,3,2,6
chr2	48555621	.	C	T	163.62	PASS	AC=1;AF=0.605;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant12-variant18-variant19-variant20-variant23-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:396,0,217:6,3,8,6
chr2	48586409	.	ATTTAGTT	A	199.36	PASS	AC=1;AF=0.542;AN=2;DP=171;MQ=60;set=variant8-variant12-variant18-variant20-variant23-variant29-variant31-variant32-variant34-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:112,0,319:2,3,0,3
chr2	48602252	.	C	T	2193.99	PASS	AC=1;AF=0.604;AN=2;DP=3477;MQ=60;set=variant7-variant8-variant9-variant12-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,82:144:99:2350,0,1597:26,36,34,48
chr2	48603483	.	A	C	2652.52	PASS	AC=1;AF=0.611;AN=2;DP=6652;MQ=60;set=variant6-variant7-variant8-variant9-variant12-variant13-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,118:236:99:2868,0,3032:49,69,53,65
chr2	48604978	.	C	T	6089.18	PASS	AC=1;AF=0.6;AN=2;DP=10494;MQ=60;set=variant7-variant8-variant9-variant12-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:217,195:412:99:5232,0,5724:90,127,79,116
chr2	48667951	.	CGCG	C,CGCGGCG,CGCGGCGGCG	49.18	PASS	AC=0,1,0;AF=0.313,0.125,0.104;AN=2;DP=1618;MQ=60;set=filterInvariant3-variant7-variant8-filterInvariant9-variant10-variant12-variant14-filterInvariant15-filterInvariant16-variant18-variant19-variant22-variant23-variant24-filterInvariant26-filterInvariant28-variant30-variant31-filterInvariant32-variant37-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:34:99:13,6,12,3
chr2	48668290	.	C	T	876.01	PASS	AC=1;AF=0.5;AN=2;DP=418;MQ=60;set=variant10-variant14-variant18-variant24-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:1147,0,966:4,26,5,30
chr2	48681997	.	G	C	377.93	PASS	AC=1;AF=0.5;AN=2;DP=124;FractionInformativeReads=1;MQ=60;set=variant10-variant14-variant18-variant24-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:331,0,470:3,11,3,9
chr2	48688258	.	AT	A,ATT	133.84	PASS	AC=1,0;AF=0.455,0.045;AN=2;DP=1532;MQ=60;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant11-filterInvariant12-variant13-filterInvariant15-filterInvariant16-filterInvariant22-filterInvariant25-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant39-variant40-filterInvariant41-variant43	GT:DP:GQ:SB	0/1:58:99:23,24,6,5
chr2	48713729	.	T	C	302.09	PASS	AC=1;AF=0.563;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant12-variant17-variant20-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:336,0,476:12,4,9,4
chr2	48722755	.	T	C	474.9	PASS	AC=1;AF=0.622;AN=2;DP=946;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:356,0,314:9,3,7,4
chr2	48725610	.	C	T	428.25	PASS	AC=1;AF=0.647;AN=2;DP=1174;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,20:35:99:595,0,409:10,5,15,5
chr2	48732670	.	C	T	977.18	PASS	AC=1;AF=0.55;AN=2;DP=1144;MQ=60;set=variant8-variant12-variant17-variant20-variant23-variant30-variant32-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,67:146:99:1606,0,2053:50,29,39,28
chr2	48734576	.	G	A	3573.46	PASS	AC=2;AF=1;AN=2;DP=5858;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3460,337,0:0,0,41,72
chr2	48738687	.	G	C	987.81	PASS	AC=1;AF=0.821;AN=2;DP=1103;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:323,0,255:4,7,4,8
chr2	48742355	.	TTCTC	TTCTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTCTC,TTCTCTCTCTCTC,TTCTCTCTCTCTCTCTCTC,TTC,T,TTCTCTCTC,TTCTCTCTCTCTCTCTC	303.54	PASS	AC=0,0,0,0,2,0,0,0,0;AF=0.05,0.263,0.038,0.275,0.138,0.138,0.013,0.013,0.038;AN=2;DP=801;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	5/5:6:16:0,0,2,4
chr2	48756682	.	C	G	130.47	PASS	AC=1;AF=0.559;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant12-variant13-variant17-variant20-variant23-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:262,0,246:6,7,5,7
chr2	48757823	.	T	C	401.52	PASS	AC=1;AF=0.553;AN=2;DP=730;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant12-variant13-variant17-variant20-variant23-variant25-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,23:60:99:557,0,968:20,17,13,10
chr2	48807593	.	GT	G	69.95	PASS	AC=1;AF=0.635;AN=2;DP=434;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant11-variant12-variant16-variant19-variant20-variant21-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:229,0,200:8,1,9,1
chr2	48807796	.	A	C	2439.65	PASS	AC=1;AF=0.621;AN=2;DP=5865;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant9-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant21-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,110:212:99:2565,0,2275:54,48,51,59
chr2	48807976	.	T	C	2625.24	PASS	AC=1;AF=0.613;AN=2;DP=4951;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant21-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,56:129:99:1306,0,1927:40,33,28,28
chr2	48808152	.	G	C	2115.77	PASS	AC=2;AF=0.629;AN=2;DP=5804;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5773,557,0:0,0,92,94
chr2	48808594	.	C	T	3029.91	PASS	AC=1;AF=0.689;AN=2;DP=6069;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,94:196:99:2198,0,2642:44,58,44,50
chr2	48808882	.	T	A	1216.77	PASS	AC=1;AF=0.621;AN=2;DP=2058;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant9-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant21-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,38:85:99:1096,0,1228:22,25,17,21
chr2	48808898	.	C	T	1161.64	PASS	AC=1;AF=0.621;AN=2;DP=1907;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant9-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant21-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,36:84:99:1041,0,1333:23,25,14,22
chr2	48809593	.	G	T	1297.05	PASS	AC=1;AF=0.679;AN=2;DP=4238;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,45:111:99:1174,0,1751:34,32,24,21
chr2	48809756	.	T	C	908.43	PASS	AC=2;AF=0.645;AN=2;DP=2405;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2605,243,0:0,0,32,49
chr2	48809873	.	T	C	388.27	PASS	AC=1;AF=0.621;AN=2;DP=832;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant9-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant21-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,19:28:99:572,0,240:2,7,5,14
chr2	48819197	.	A	G	1444.97	PASS	AC=1;AF=0.583;AN=2;DP=892;MQ=60;set=variant3-variant4-variant8-variant9-variant11-variant12-variant13-variant16-variant19-variant20-variant21-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:533,0,458:5,11,4,14
chr2	48822381	.	G	A	3083.26	PASS	AC=1;AF=0.7;AN=2;DP=3236;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,32:72:99:814,0,952:23,17,18,14
chr2	48822540	.	T	C	4208.97	PASS	AC=1;AF=0.538;AN=2;DP=2735;MQ=60;set=variant3-variant4-variant9-variant12-variant13-variant20-variant23-variant29-variant30-variant33-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,115:192:99:2939,0,1743:43,34,62,53
chr2	48823626	.	G	T	862.94	PASS	AC=1;AF=0.5;AN=2;DP=176;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,47:84:99:1491,0,1015:17,20,18,29
chr2	48824918	.	G	A	489.39	PASS	AC=1;AF=0.5;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,39:88:99:970,0,1346:17,32,16,23
chr2	48825109	.	A	G	625.46	PASS	AC=1;AF=0.542;AN=2;DP=571;MQ=60;set=variant3-variant4-variant9-variant12-variant20-variant23-variant29-variant30-variant33-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:706,0,656:12,11,17,8
chr2	48825650	.	C	G	2039.25	PASS	AC=1;AF=0.708;AN=2;DP=1776;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,19:35:99:634,0,551:1,15,2,17
chr2	48844968	.	C	G	4131.71	PASS	AC=2;AF=0.798;AN=2;DP=6225;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3828,373,0:0,0,67,58
chr2	48845119	.	C	T	834.39	PASS	AC=1;AF=0.5;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,37:110:99:710,0,2040:29,44,16,21
chr2	48848515	.	G	C	222.67	PASS	AC=1;AF=0.536;AN=2;DP=197;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant9-variant12-variant20-variant23-variant29-variant30-variant33-variant34-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:234,0,271:0,7,2,6
chr2	48898798	.	T	A	5296.32	PASS	AC=2;AF=0.966;AN=2;DP=6359;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,145:145:99:4256,433,0:0,0,66,79
chr2	48906625	.	T	C	6068.09	PASS	AC=2;AF=0.966;AN=2;DP=7615;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:4841,497,0:0,0,79,87
chr2	48915871	.	A	G	4141.44	PASS	AC=2;AF=0.789;AN=2;DP=4793;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,103:104:99:2959,301,0:1,0,47,56
chr2	48921375	.	T	C	2119.41	PASS	AC=2;AF=0.789;AN=2;DP=2980;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2136,210,0:0,0,41,29
chr2	48925746	.	C	T	1328.99	PASS	AC=1;AF=0.857;AN=2;DP=2311;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:637,0,680:13,14,14,8
chr2	48925986	.	ATT	AT,A	102.15	PASS	AC=2,0;AF=0.963,0.024;AN=2;DP=614;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:11:33:0,0,3,8
chr2	48941072	.	CA	C	922.03	PASS	AC=1;AF=0.5;AN=2;DP=303;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant9-variant10-variant26-variant30-variant33-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:365,0,485:11,3,10,1
chr2	48947580	.	G	A	2605.72	PASS	AC=1;AF=0.5;AN=2;DP=2028;MQ=60;set=variant-variant6-variant9-variant10-variant26-variant30-variant33-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:100,78:178:99:1833,0,2470:50,50,39,39
chr2	48952701	.	C	G	452.97	PASS	AC=2;AF=1;AN=2;DP=423;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:420,39,0:0,0,9,4
chr2	48956431	.	T	A	811.46	PASS	AC=1;AF=0.567;AN=2;DP=1713;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:410,0,549:5,15,9,8
chr2	48956475	.	C	T	559.66	PASS	AC=1;AF=0.529;AN=2;DP=606;MQ=60;set=variant4-variant5-variant7-variant8-variant10-variant13-variant14-variant18-variant20-variant31-variant34-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:267,0,264:2,7,5,6
chr2	48956512	.	A	G	475.24	PASS	AC=2;AF=0.559;AN=2;DP=358;MQ=60;set=variant4-variant5-variant7-variant8-variant10-variant13-variant14-variant18-variant20-variant31-variant34-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:604,54,0:0,0,6,12
chr2	48960317	.	A	G	306.82	PASS	AC=2;AF=0.55;AN=2;DP=798;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant27-variant28-variant32-variant34-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1399,134,0:0,0,14,31
chr2	48982755	.	G	GGCTGCA	1975.13	PASS	AC=1;AF=0.528;AN=2;DP=1717;MQ=60;set=variant2-variant8-variant12-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant32-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1814,0,2681:20,19,24,22
chr2	48982868	.	C	A	914.82	PASS	AC=1;AF=0.5;AN=2;DP=480;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,57:80:99:1494,0,586:5,18,26,31
chr2	49003623	.	T	G	797.52	PASS	AC=2;AF=0.553;AN=2;DP=1011;MQ=60;set=variant4-variant5-variant7-variant8-variant10-variant13-variant18-variant20-variant25-variant30-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1412,138,0:0,0,17,29
chr2	49189921	.	C	T	2176.63	PASS	AC=2;AF=0.629;AN=2;DP=5266;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,124:126:99:4048,328,0:1,1,52,72
chr2	49191041	.	C	T	901.78	PASS	AC=2;AF=0.632;AN=2;DP=2200;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1552,144,0:0,0,16,32
chr2	49210445	.	C	G	919.89	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=4.184;FractionInformativeReads=1;MQ=60;MQRankSum=0.179;QD=17.69;ReadPosRankSum=0.987;SOR=1.395;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,32:52:99:948,0,389:9,11,10,22
chr2	49215977	.	G	A	533.84	PASS	AC=2;AF=0.774;AN=2;DP=1256;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:783,66,0:0,0,17,5
chr2	49216284	.	C	T	230.15	PASS	AC=2;AF=0.762;AN=2;DP=787;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:542,42,0:0,0,2,12
chr2	49217916	.	T	G	198.42	PASS	AC=2;AF=0.638;AN=2;DP=442;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant22-variant25-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:251,21,0:0,0,1,6
chr2	49244559	.	A	G	2571.16	PASS	AC=2;AF=0.569;AN=2;DP=2122;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1962,185,0:0,0,40,22
chr2	49286879	.	C	A	1072.29	PASS	AC=2;AF=0.537;AN=2;DP=2551;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2607,261,0:0,0,35,52
chr2	49381585	.	C	T	151.64	PASS	AC=1;AF=0.5;AN=2;DP=518;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant11-variant15-variant18-variant20-variant23-variant29-variant33-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:358,0,396:7,9,6,8
chr2	49381696	.	CTTTT	CT,CTTT,CTT,CTTTTT,C	152.26	PASS	AC=0,0,0,0,1;AF=0.278,0.222,0.019,0.019,0.019;AN=2;DP=548;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-filterInvariant27-variant28-variant29-variant32-variant33-variant36-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/5:15:90:0,4,4,7
chr2	49509859	.	C	CT	153.76	PASS	AC=1;AF=0.56;AN=2;DP=657;MQ=60;set=variant-variant2-variant5-variant8-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:26,15:41:99:353,0,704:18,8,10,5
chr2	49510173	.	A	C	1368.24	PASS	AC=1;AF=0.58;AN=2;DP=2273;MQ=60;set=variant-variant2-variant5-variant8-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant23-variant27-variant29-variant30-variant31-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,47:88:99:1240,0,1084:22,19,27,20
chr2	50147835	.	CGTGTGTGTGTGTGTGTGT	CGTGTGTGT,CGTGTGTGTGTGT,CGTGTGTGTGTGTGTGT,CGTGTGTGTGT,CGTGTGTGTGTGTGT,C,CGTGTGT,CGTGTGTGTGTGTGTGTGTGTGT,CGT	2706.54	PASS	AC=1,0,1,0,0,0,0,0,0;AF=0.205,0.159,0.114,0.159,0.057,0.125,0.08,0.011,0.011;AN=2;DP=6065;set=Intersection	GT:DP:GQ:SB	1/3:86:99:0,1,34,51
chr2	50148111	.	A	AAAGT	2571.18	PASS	AC=1;AF=0.633;AN=2;DP=4237;MQ=60;set=variant-variant2-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,62:123:99:2535,0,3376:34,27,33,29
chr2	50201110	.	A	G	865.02	PASS	AC=2;AF=0.864;AN=2;DP=4277;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2349,216,0:0,0,46,26
chr2	50201383	.	G	A	278.1	PASS	AC=1;AF=0.6;AN=2;DP=798;MQ=60;set=variant-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant28-variant29-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:369,0,511:3,13,1,9
chr2	50246224	.	C	G	378.67	PASS	AC=1;AF=0.5;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant27-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:538,0,445:13,4,15,7
chr2	50246232	.	TCCAAAACATTA	T	708.3	PASS	AC=1;AF=0.5;AN=2;DP=334;MQ=60;set=variant10-variant11-variant27-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,23:43:99:925,0,1305:15,5,16,7
chr2	50246249	.	T	G	790.71	PASS	AC=1;AF=0.5;AN=2;DP=398;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant27-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,25:48:99:953,0,1374:17,6,17,8
chr2	50280283	.	T	C	500.47	PASS	AC=2;AF=0.808;AN=2;DP=543;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:584,45,0:0,0,13,2
chr2	50280338	.	G	A	1185.33	PASS	AC=2;AF=0.784;AN=2;DP=1441;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:963,90,0:0,0,21,9
chr2	50434741	.	C	T	279.45	PASS	AC=1;AF=0.583;AN=2;DP=869;MQ=60;set=variant6-variant9-variant11-variant14-variant16-variant19-variant21-variant23-variant26-variant27-variant28-variant31-variant32-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:205,0,431:11,7,6,5
chr2	50434759	.	C	G	656.74	PASS	AC=2;AF=0.895;AN=2;DP=2454;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:89:812,89,0:0,0,17,13
chr2	50574485	.	A	G	2153.32	PASS	AC=1;AF=0.605;AN=2;DP=2426;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant9-variant12-variant17-variant19-variant20-variant21-variant23-variant27-variant28-variant30-variant31-variant35-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,56:118:99:1620,0,1754:30,32,27,29
chr2	50692459	.	T	A	484.96	PASS	AC=1;AF=0.697;AN=2;DP=1526;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:597,0,740:19,4,16,4
chr2	50692560	.	A	G	1617.3	PASS	AC=1;AF=0.595;AN=2;DP=3560;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant12-variant14-variant17-variant19-variant23-variant24-variant27-variant28-variant34-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,73:147:99:1715,0,1815:46,28,39,34
chr2	50692819	.	T	G	817.74	PASS	AC=2;AF=0.92;AN=2;DP=1480;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1071,84,0:0,0,4,24
chr2	50693363	.	A	T	466.32	PASS	AC=1;AF=0.563;AN=2;DP=166;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant8-variant11-variant17-variant19-variant23-variant24-variant25-variant27-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:133,0,153:4,1,4,1
chr2	50693504	.	AAC	A	785.21	PASS	AC=1;AF=0.705;AN=2;DP=2810;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,38:68:99:1505,0,1209:14,16,24,14
chr2	50699305	.	T	A	380.51	PASS	AC=1;AF=0.684;AN=2;DP=769;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:107,0,237:6,0,4,0
chr2	50733860	.	A	G	612.33	PASS	AC=2;AF=0.989;AN=2;DP=1766;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:857,78,0:0,0,12,14
chr2	50758657	.	T	C	390.13	PASS	AC=2;AF=0.837;AN=2;DP=1215;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1156,105,0:0,0,11,24
chr2	50848536	.	T	C	808.25	PASS	AC=1;AF=0.5;AN=2;DP=55;FS=6.021;FractionInformativeReads=1;MQ=60;MQRankSum=1.493;QD=14.7;ReadPosRankSum=3.182;SOR=0.231;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,32:55:99:836,0,641:5,18,12,20
chr2	50858107	.	T	A	1313.63	PASS	AC=2;AF=0.738;AN=2;DP=1764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1213,117,0:0,0,26,13
chr2	50966161	.	G	A	1448.7	PASS	AC=2;AF=0.909;AN=2;DP=1919;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1045,102,0:0,0,20,14
chr2	50966283	.	C	T	3906.35	PASS	AC=2;AF=0.849;AN=2;DP=4764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2863,278,0:0,0,57,36
chr2	51144368	.	T	G	1612.13	PASS	AC=1;AF=0.595;AN=2;DP=3157;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant9-variant11-variant14-variant18-variant21-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,46:117:99:1151,0,1763:31,40,23,23
chr2	51146150	.	A	AG	14735.5	PASS	AC=1;AF=0.7;AN=2;DP=17078;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:193,196:389:99:5743,0,5624:79,114,82,114
chr2	51148872	.	T	A	640.49	PASS	AC=1;AF=0.625;AN=2;DP=492;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant18-variant21-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:25:168,0,25:0,1,3,3
chr2	51206342	.	C	G	626.97	PASS	AC=1;AF=0.636;AN=2;DP=1417;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:807,0,788:21,8,21,10
chr2	51254478	.	G	A	191.94	PASS	AC=1;AF=0.615;AN=2;DP=921;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:407,0,506:11,11,11,8
chr2	51255692	.	A	G	287.5	PASS	AC=1;AF=0.62;AN=2;DP=1048;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:457,0,242:6,3,9,6
chr2	51255832	.	T	G	478.15	PASS	AC=1;AF=0.62;AN=2;DP=1068;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant26-variant27-variant30-variant32-variant33-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:524,0,434:7,8,11,10
chr2	51259644	.	AAGAAAGAGAGAGAGAGAGAGAGAGAGAG	AAGAGAGAGAGAG,AAGAGAGAGAGAGAG,A,AAGAGAGAGAGAGAGAG	241.12	PASS	AC=1,0,0,0;AF=0.389,0.222,0.028,0.028;AN=2;DP=302;set=variant-variant5-variant7-variant9-variant10-variant11-variant14-variant16-variant18-variant20-variant23-variant24-variant26-variant32-variant33-variant35-variant41-variant43	GT:DP:GQ:SB	0/1:8:56:0,2,4,2
chr2	53897525	.	C	G	3537.19	PASS	AC=2;AF=0.583;AN=2;DP=2606;set=variant-variant4-variant10-variant18-variant20-variant23-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,175:177:99:5537,478,0:1,1,86,89
chr2	53920931	.	G	A	399.59	PASS	AC=2;AF=0.571;AN=2;DP=337;MQ=60;set=variant-variant4-variant10-variant18-variant20-variant23-variant26-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1179,102,0:0,0,26,8
chr2	53921270	.	C	T	244.62	PASS	AC=2;AF=0.6;AN=2;DP=110;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant10-variant18-variant20-variant23-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:26:287,26,0:0,0,1,8
chr2	53955850	.	C	T	929.87	PASS	AC=2;AF=0.577;AN=2;DP=796;MQ=60;set=variant-variant7-variant10-variant12-variant18-variant20-variant23-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1825,173,0:0,0,39,19
chr2	53956883	.	T	G	541.92	PASS	AC=2;AF=0.567;AN=2;DP=648;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant18-variant20-variant23-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1571,150,0:0,0,17,33
chr2	53994820	.	C	T	405.28	PASS	AC=2;AF=0.563;AN=2;DP=191;MQ=60;set=variant4-variant10-variant12-variant18-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:708,77,0:0,0,16,10
chr2	53994929	.	G	A	1427.6	PASS	AC=2;AF=0.563;AN=2;DP=616;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant12-variant18-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2551,218,0:0,0,53,20
chr2	54002064	.	C	A	1175.44	PASS	AC=2;AF=0.571;AN=2;DP=1225;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant18-variant20-variant23-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2899,265,0:0,0,39,50
chr2	54013544	.	T	C	705.89	PASS	AC=2;AF=0.617;AN=2;DP=2540;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2804,260,0:0,0,37,50
chr2	54023247	.	GT	G	302.68	PASS	AC=2;AF=0.63;AN=2;DP=678;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:535,60,0:0,0,7,13
chr2	54024626	.	C	T	223.93	PASS	AC=2;AF=0.625;AN=2;DP=1146;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant31-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:662,69,0:0,0,13,10
chr2	54024957	.	C	G	263.08	PASS	AC=2;AF=0.571;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant12-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:615,60,0:0,0,8,12
chr2	54035374	.	A	G	527.02	PASS	AC=2;AF=0.563;AN=2;DP=555;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant25-variant27-variant31-variant32-variant34-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:989,78,0:0,0,21,5
chr2	54035447	.	A	G	1153.03	PASS	AC=2;AF=0.571;AN=2;DP=1059;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant18-variant20-variant23-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:1979,198,0:0,0,38,28
chr2	54041983	.	G	T	1182.9	PASS	AC=2;AF=0.621;AN=2;DP=2852;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2204,231,0:0,0,44,33
chr2	54042132	.	CTTTTTTTTTT	CTTTTTTTT,CTTTTTTTTT,C,CTTTTTTT	99.16	PASS	AC=0,0,0,1;AF=0.192,0.154,0.096,0.135;AN=2;DP=718;set=variant-filterInvariant3-variant6-variant7-variant9-variant10-filterInvariant11-variant12-filterInvariant14-filterInvariant15-variant18-variant19-variant20-variant24-variant25-variant27-filterInvariant29-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/4:16:30:1,3,0,12
chr2	54087274	.	C	CAGA	148.6	PASS	AC=2;AF=0.6;AN=2;DP=456;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant18-variant19-variant20-variant22-variant24-variant25-variant31-variant32-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:675,45,0:0,0,6,9
chr2	54091570	.	GA	G	2513.16	PASS	AC=2;AF=0.575;AN=2;DP=4984;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant18-variant19-variant20-variant22-variant24-variant25-variant31-variant32-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:7,191:198:99:5093,430,0:3,4,80,111
chr2	54091688	.	C	T	3400.57	PASS	AC=2;AF=0.575;AN=2;DP=5312;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant18-variant19-variant20-variant22-variant24-variant25-variant31-variant32-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,212:212:99:6482,634,0:0,0,99,113
chr2	54091885	.	T	A	1486.02	PASS	AC=2;AF=0.6;AN=2;DP=2693;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant18-variant19-variant20-variant22-variant24-variant25-variant31-variant32-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3490,326,0:0,0,61,48
chr2	54092485	.	CA	C	100.41	PASS	AC=2;AF=0.579;AN=2;DP=402;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant18-variant19-variant20-variant22-variant24-variant25-variant31-variant32-variant34-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,20:21:35:536,35,0:0,1,10,10
chr2	54114967	.	G	A	1216.3	PASS	AC=2;AF=0.575;AN=2;DP=1696;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant24-variant25-variant31-variant32-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:3050,276,0:0,0,65,27
chr2	54115830	.	A	G	970.62	PASS	AC=2;AF=0.75;AN=2;DP=151;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.401;ReadPosRankSum=-1.382;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2643,255,0:0,0,50,35
chr2	54115904	.	A	G	1391.16	PASS	AC=2;AF=0.571;AN=2;DP=2654;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant22-variant24-variant25-variant31-variant32-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,114:114:99:3322,341,0:0,0,53,61
chr2	54116003	.	C	T	522.92	PASS	AC=2;AF=0.575;AN=2;DP=1082;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant24-variant25-variant31-variant32-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1573,132,0:0,0,12,32
chr2	54120025	.	A	T	761.74	PASS	AC=2;AF=0.579;AN=2;DP=1445;FractionInformativeReads=1;set=variant-variant4-variant7-variant10-variant12-variant13-variant18-variant19-variant20-variant24-variant25-variant31-variant32-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2068,213,0:0,0,35,36
chr2	54120204	.	A	G	159.05	PASS	AC=2;AF=0.607;AN=2;DP=88;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant18-variant19-variant25-variant32-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:336,24,0:0,0,0,8
chr2	54120591	.	C	T	309.03	PASS	AC=2;AF=0.579;AN=2;DP=494;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant18-variant19-variant20-variant24-variant25-variant31-variant32-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:835,75,0:0,0,18,7
chr2	54120820	.	G	A	1496.13	PASS	AC=2;AF=0.62;AN=2;DP=2303;MQ=60;set=variant-variant4-variant6-variant7-variant10-variant12-variant13-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2605,257,0:0,0,34,52
chr2	54122956	.	A	G	419.99	PASS	AC=2;AF=0.711;AN=2;DP=1264;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1498,131,0:0,0,10,34
chr2	54122984	.	C	T	231.05	PASS	AC=2;AF=0.579;AN=2;DP=381;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant18-variant19-variant20-variant24-variant25-variant31-variant32-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1137,84,0:0,0,2,26
chr2	54125258	.	T	C	103.63	PASS	AC=2;AF=0.603;AN=2;DP=393;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant27-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:529,36,0:0,0,7,5
chr2	54125495	.	T	C	303.84	PASS	AC=2;AF=0.579;AN=2;DP=609;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant18-variant19-variant20-variant24-variant25-variant31-variant32-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1029,105,0:0,0,12,23
chr2	54127041	.	C	T	2250.34	PASS	AC=2;AF=0.6;AN=2;DP=3215;MQ=60;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2932,291,0:0,0,47,50
chr2	54133744	.	T	C	605.14	PASS	AC=2;AF=0.548;AN=2;DP=1108;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant24-variant25-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1614,150,0:0,0,31,19
chr2	54135429	.	G	C	437.36	PASS	AC=2;AF=0.571;AN=2;DP=1110;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant24-variant25-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1775,171,0:0,0,38,19
chr2	54144448	.	T	C	128.37	PASS	AC=2;AF=0.591;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant22-variant24-variant25-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:371,39,0:0,0,5,8
chr2	54146527	.	A	G	393.04	PASS	AC=2;AF=0.75;AN=2;DP=69;FractionInformativeReads=1;MQ=60;MQRankSum=-0.019;ReadPosRankSum=0.245;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1145,111,0:0,0,13,24
chr2	54148331	.	C	A	211.3	PASS	AC=2;AF=0.63;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant7-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:268,21,0:0,0,0,7
chr2	54152927	.	T	C	107.13	PASS	AC=2;AF=0.595;AN=2;DP=539;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant24-variant25-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:929,72,0:0,0,11,13
chr2	54155240	.	A	G	744.85	PASS	AC=2;AF=0.595;AN=2;DP=1581;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant24-variant25-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2423,231,0:0,0,51,26
chr2	54158957	.	C	T	532.41	PASS	AC=2;AF=0.595;AN=2;DP=926;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant24-variant25-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1784,144,0:0,0,37,11
chr2	54161885	.	G	T	408.65	PASS	AC=2;AF=0.595;AN=2;DP=888;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant10-variant12-variant13-variant14-variant18-variant19-variant20-variant24-variant25-variant31-variant32-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1281,123,0:0,0,14,27
chr2	54342607	.	T	G	869.57	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.493;QD=13.8;ReadPosRankSum=-0.172;SOR=0.648;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:898,0,836:15,18,14,16
chr2	54343012	.	C	A	351.52	PASS	AC=2;AF=0.621;AN=2;DP=1298;set=variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1257,111,0:0,0,9,28
chr2	54362437	.	T	C	280.34	PASS	AC=2;AF=0.63;AN=2;DP=480;MQ=60;set=variant6-variant7-variant10-variant12-variant14-variant18-variant19-variant20-variant22-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:639,48,0:0,0,14,2
chr2	54369120	.	TTGTG	TTGTGTG,TTGTGTGTGTGTG,T,TTG	139.61	PASS	AC=0,0,0,1;AF=0.25,0.188,0.125,0.063;AN=2;DP=66;FS=0;MQ=60;set=variant2-variant8-variant13-variant16-variant35-variant37-variant38-variant41	GT:DP:GQ:SB	0/4:7:77:1,2,2,2
chr2	54480245	.	G	A	183.95	PASS	AC=2;AF=0.583;AN=2;DP=93;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant16-variant23-variant29-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:432,33,0:0,0,9,2
chr2	54480336	.	A	T	1058.56	PASS	AC=2;AF=0.583;AN=2;DP=577;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant16-variant23-variant29-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2647,237,0:0,0,55,24
chr2	54480369	.	C	A	2099.61	PASS	AC=2;AF=0.643;AN=2;DP=3943;MQ=60;set=variant3-variant4-variant6-variant7-variant10-variant13-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4043,402,0:0,0,80,54
chr2	54481076	.	CTTT	C	2157.08	PASS	AC=2;AF=0.571;AN=2;DP=645;MQ=60;set=variant6-variant10-variant16-variant23-variant29-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:3112,214,0:0,0,37,34
chr2	54481592	.	C	G	808.66	PASS	AC=2;AF=0.638;AN=2;DP=1410;MQ=60;set=variant3-variant4-variant6-variant7-variant10-variant13-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1331,129,0:0,0,19,24
chr2	54481636	.	T	C	876.06	PASS	AC=2;AF=0.571;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant16-variant23-variant29-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1434,135,0:0,0,22,23
chr2	54482703	.	GGGGCCC	G	3578.05	PASS	AC=2;AF=0.556;AN=2;DP=1949;MQ=60;set=variant6-variant10-variant16-variant22-variant23-variant29-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,206:208:99:8928,506,0:1,1,80,126
chr2	54483443	.	T	C	720.17	PASS	AC=2;AF=0.617;AN=2;DP=1448;MQ=60;set=variant3-variant4-variant6-variant7-variant10-variant13-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1847,156,0:0,0,16,36
chr2	54494370	.	A	G	727.63	PASS	AC=2;AF=0.989;AN=2;DP=1318;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.506;ReadPosRankSum=-0.811;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:855,72,0:0,0,19,5
chr2	54494448	.	G	A	679.12	PASS	AC=2;AF=0.556;AN=2;DP=764;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant16-variant22-variant23-variant29-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2216,216,0:0,0,43,29
chr2	54608883	.	C	A	608.74	PASS	AC=2;AF=0.625;AN=2;DP=1400;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant13-variant17-variant18-variant20-variant22-variant24-variant26-variant27-variant28-variant32-variant33-variant34-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1943,183,0:0,0,35,26
chr2	54683711	.	T	C	81.17	PASS	AC=1;AF=0.818;AN=2;DP=389;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:111,0,115:3,3,3,2
chr2	54756625	.	G	C	804.9	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=3.377;FractionInformativeReads=1;MQ=60;MQRankSum=0.27;QD=12.2;ReadPosRankSum=2.261;SOR=0.883;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,35:66:99:833,0,899:14,17,20,15
chr2	54756740	.	C	T	1932.23	PASS	AC=2;AF=0.782;AN=2;DP=4919;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3379,332,0:0,0,56,55
chr2	54785705	.	T	C	1800.83	PASS	AC=1;AF=0.6;AN=2;DP=1099;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant13-variant14-variant23-variant28-variant29-variant31-variant33-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,28:46:99:757,0,442:11,7,15,13
chr2	54839240	.	G	A	3417.36	PASS	AC=1;AF=0.5;AN=2;DP=586;FractionInformativeReads=1;MQ=60;set=variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:145,149:294:99:3586,0,3595:73,72,79,70
chr2	54839276	.	A	G	7478.51	PASS	AC=2;AF=0.8;AN=2;DP=11711;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,291:291:99:9028,873,0:0,0,136,155
chr2	54843559	.	C	T	619.3	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.31;QD=19.98;ReadPosRankSum=0.599;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,20:31:99:648,0,355:2,9,5,15
chr2	54844926	.	T	G	768.96	PASS	AC=1;AF=0.563;AN=2;DP=392;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant13-variant14-variant18-variant23-variant29-variant31-variant33-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:256,0,388:2,10,1,7
chr2	54845490	.	C	A	298.11	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;set=variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:236,0,319:1,9,1,7
chr2	54848728	.	A	G	1039.51	PASS	AC=2;AF=0.611;AN=2;DP=496;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant13-variant14-variant18-variant19-variant23-variant28-variant29-variant31-variant33-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:983,75,0:0,0,5,20
chr2	54850743	.	A	G	2144.05	PASS	AC=1;AF=0.5;AN=2;DP=328;FractionInformativeReads=1;MQ=60;set=variant19-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,89:161:99:2201,0,1607:37,35,44,45
chr2	54850991	.	G	A	470.91	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=1.434;FractionInformativeReads=1;MQ=60;MQRankSum=0.35;QD=14.27;ReadPosRankSum=0.424;SOR=0.42;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,20:33:99:499,0,348:4,9,8,12
chr2	54851075	.	A	T	213.17	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.597;QD=19.38;ReadPosRankSum=1.246;SOR=1.402;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:241,0,106:1,3,1,6
chr2	54855137	.	T	C	3845.99	PASS	AC=2;AF=0.8;AN=2;DP=3998;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3805,330,0:0,0,73,37
chr2	54855454	.	G	A	869.86	PASS	AC=1;AF=0.571;AN=2;DP=402;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant13-variant14-variant23-variant29-variant31-variant33-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:569,0,635:1,17,2,15
chr2	54858664	.	C	T	2193.06	PASS	AC=1;AF=0.6;AN=2;DP=1845;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant13-variant14-variant23-variant28-variant29-variant31-variant33-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,62:140:99:1570,0,2041:34,44,30,32
chr2	54864836	.	T	C	577.56	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.354;QD=16.99;ReadPosRankSum=-1.985;SOR=0.723;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,21:34:99:606,0,400:10,3,16,5
chr2	54872789	.	A	G	191.91	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=6.368;FractionInformativeReads=1;MQ=60;MQRankSum=0.761;QD=14.76;ReadPosRankSum=-1.606;SOR=0.061;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:85:220,0,85:0,3,5,5
chr2	54877146	.	A	G	817.78	PASS	AC=1;AF=0.607;AN=2;DP=399;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant13-variant23-variant28-variant29-variant31-variant33-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,11:39:99:287,0,770:8,20,2,9
chr2	54882381	.	G	A	4093.1	PASS	AC=1;AF=0.607;AN=2;DP=1632;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant13-variant23-variant28-variant29-variant31-variant33-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,45:102:99:1072,0,1343:23,34,19,26
chr2	54884870	.	C	T	697.76	PASS	AC=2;AF=0.65;AN=2;DP=660;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:631,48,0:0,0,13,3
chr2	54887287	.	C	T	2807.93	PASS	AC=1;AF=0.5;AN=2;DP=235;FS=2.239;FractionInformativeReads=1;MQ=60;MQRankSum=0.393;QD=11.95;ReadPosRankSum=0.984;SOR=0.542;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:122,113:235:99:2836,0,3018:73,49,63,50
chr2	54888075	.	G	A	1586.33	PASS	AC=1;AF=0.6;AN=2;DP=689;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant13-variant19-variant23-variant28-variant29-variant31-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,12:37:99:291,0,734:13,12,5,7
chr2	54888497	.	C	T	14921.9	PASS	AC=2;AF=0.808;AN=2;DP=15082;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,342:342:99:11020,1023,0:0,0,187,155
chr2	54888533	.	T	C	14918	PASS	AC=2;AF=0.808;AN=2;DP=14836;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,345:345:99:11157,1033,0:0,0,182,163
chr2	54889136	.	G	A	9250.81	PASS	AC=2;AF=0.808;AN=2;DP=9262;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,246:246:99:7914,737,0:0,0,127,119
chr2	54889390	.	C	T	1465.05	PASS	AC=2;AF=0.808;AN=2;DP=1771;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1599,141,0:0,0,13,34
chr2	54889430	.	C	T	276.29	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.814;QD=10.23;ReadPosRankSum=-0.222;SOR=0.972;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:305,0,470:4,12,2,9
chr2	54895851	.	G	T	334.09	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=0;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,32:50:99:773,0,413:10,8,18,14
chr2	54895925	.	AT	A	1079.15	PASS	AC=1;AF=0.6;AN=2;DP=830;MQ=60;set=variant-variant2-variant6-variant8-variant10-variant13-variant23-variant28-variant29-variant31-variant33-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,21:62:99:415,0,979:21,20,10,11
chr2	54896377	.	A	AT,ATTTT,ATT,ATTT,ATTTTT	3316.09	PASS	AC=2,0,0,0,0;AF=0.364,0.205,0.125,0.284,0.011;AN=2;DP=6478;set=Intersection	GT:DP:GQ:SB	1/1:146:40:7,8,82,49
chr2	55040426	.	A	G	6406.02	PASS	AC=2;AF=0.884;AN=2;DP=8202;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:5508,572,0:0,0,90,101
chr2	55040589	.	A	G	376.43	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=6.69;FractionInformativeReads=1;MQ=60;MQRankSum=-1.707;QD=17.11;ReadPosRankSum=0.722;SOR=3.383;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:405,0,289:3,8,0,11
chr2	55047659	.	A	G	1180.62	PASS	AC=2;AF=1;AN=2;DP=37;FS=0;FractionInformativeReads=1;MQ=60;QD=31.91;SOR=2.012;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1209,111,0:0,0,10,27
chr2	55056761	.	T	C	705.47	PASS	AC=2;AF=1;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;QD=28.02;SOR=3.611;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:734,57,0:0,0,2,17
chr2	55071094	.	T	G	542.38	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=0;FractionInformativeReads=1;MQ=59.85;MQRankSum=0.684;QD=14.66;ReadPosRankSum=1.535;SOR=0.752;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:571,0,585:16,2,17,2
chr2	55071101	.	TTGTG	TTGTGTGTGTGTGTG,TTGTGTGTGTGTG,TTG,TTGTGTGTGTGTGTGTGTG,T,TTGTGTGTGTG,TTGTGTGTGTGTGTGTG,TTGTGTGTGTGTGTGTGTGTG,TTGTGTG,TTGTGTGTG	1208.79	PASS	AC=1,0,0,0,0,0,0,0,0,1;AF=0.114,0.239,0.25,0.023,0.023,0.114,0.045,0.023,0.034,0.045;AN=2;DP=2158;set=Intersection	GT:DP:GQ:SB	10/1:30:99:0,0,23,7
chr2	55074429	.	C	A	43.71	PASS	AC=1;AF=0.648;AN=2;DP=332;MQ=60;set=variant2-variant5-variant6-variant8-variant10-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:383,0,225:6,2,10,1
chr2	55074875	.	A	AGG	477.36	PASS	AC=1;AF=0.563;AN=2;DP=253;set=variant6-variant17-variant23-variant24-variant28-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:459,0,3801:5,12,1,12
chr2	55074878	.	A	ATCGTAG	477.36	PASS	AC=1;AF=0.563;AN=2;DP=216;FractionInformativeReads=1;set=variant6-variant17-variant23-variant24-variant28-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:459,0,3801:5,12,0,11
chr2	55074880	.	TA	T	385.49	PASS	AC=1;AF=0.563;AN=2;DP=191;FractionInformativeReads=1;set=variant6-variant17-variant23-variant24-variant28-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:411,0,3806:5,12,0,9
chr2	55074887	.	G	GT	304.52	PASS	AC=1;AF=0.563;AN=2;DP=171;FractionInformativeReads=1;set=variant6-variant17-variant23-variant24-variant28-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:339,0,3519:4,9,0,9
chr2	55074889	.	TC	T	262.53	PASS	AC=1;AF=0.563;AN=2;DP=165;FractionInformativeReads=1;set=variant6-variant17-variant23-variant24-variant28-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:339,0,3519:4,9,0,8
chr2	55074891	.	TACGATCC	T	223.55	PASS	AC=1;AF=0.563;AN=2;DP=158;FractionInformativeReads=1;set=variant6-variant17-variant23-variant24-variant28-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:297,0,3522:3,9,0,8
chr2	55077136	.	G	C	1160.44	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0.979;FractionInformativeReads=1;MQ=60;MQRankSum=0.956;QD=15.07;ReadPosRankSum=-3.085;SOR=0.542;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,45:77:99:1189,0,923:24,8,32,13
chr2	55093842	.	G	A	837.36	PASS	AC=2;AF=0.667;AN=2;DP=1152;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant9-variant11-variant13-variant15-variant17-variant19-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1608,165,0:0,0,35,20
chr2	55093859	.	C	G	688.26	PASS	AC=1;AF=0.643;AN=2;DP=397;MQ=60;set=variant6-variant17-variant23-variant24-variant28-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:777,0,652:18,9,19,13
chr2	55121930	.	C	G	570.94	PASS	AC=2;AF=0.667;AN=2;DP=1674;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1514,128,0:0,0,36,7
chr2	55122589	.	A	G	903.68	PASS	AC=1;AF=0.633;AN=2;DP=2546;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant20-variant23-variant26-variant27-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,30:86:99:716,0,1450:26,30,9,21
chr2	55126991	.	G	A	839.13	PASS	AC=1;AF=0.5;AN=2;DP=129;FractionInformativeReads=1;MQ=60;set=variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:867,0,1177:15,29,10,25
chr2	55138272	.	G	A	554.2	PASS	AC=2;AF=0.704;AN=2;DP=314;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant15-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:442,33,0:0,0,1,10
chr2	55155672	.	A	G	1373.83	PASS	AC=2;AF=0.654;AN=2;DP=4107;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant23-variant26-variant27-variant30-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,166:168:99:5200,454,0:1,1,90,76
chr2	55176112	.	C	T	1046.15	PASS	AC=1;AF=0.583;AN=2;DP=3030;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant20-variant21-variant22-variant23-variant27-variant30-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,43:106:99:1102,0,1652:37,26,25,18
chr2	55180965	.	G	A	88.71	PASS	AC=2;AF=0.943;AN=2;DP=692;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:661,48,0:0,0,14,2
chr2	55181022	.	TA	T,TAA	270.68	PASS	AC=1,0;AF=0.4,0.1;AN=2;DP=2044;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-filterInvariant25-variant27-variant28-variant29-variant30-variant32-filterInvariant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:46:99:13,4,23,6
chr2	55187295	.	G	A	752.35	PASS	AC=2;AF=0.625;AN=2;DP=1583;MQ=60;set=variant-variant6-variant10-variant11-variant13-variant14-variant17-variant23-variant24-variant26-variant28-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:4659,316,0:0,0,58,46
chr2	55187297	.	A	AG	2507.14	PASS	AC=2;AF=1;AN=2;DP=4606;FS=0;MQ=60;MQRankSum=-0.765;ReadPosRankSum=1.75;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:4659,316,0:0,0,59,46
chr2	55191897	.	G	T	805.9	PASS	AC=1;AF=0.5;AN=2;DP=221;FractionInformativeReads=1;MQ=60;set=variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,32:53:99:928,0,512:6,15,7,25
chr2	55197070	.	G	C	742.24	PASS	AC=1;AF=0.5;AN=2;DP=389;FractionInformativeReads=1;MQ=60;set=variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,51:89:99:1395,0,1077:29,9,34,17
chr2	55197882	.	A	T	1122.04	PASS	AC=2;AF=0.722;AN=2;DP=1966;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2497,207,0:0,0,26,43
chr2	55198935	.	A	G	1929.72	PASS	AC=1;AF=0.5;AN=2;DP=160;FS=1.958;FractionInformativeReads=1;MQ=60;MQRankSum=-0.116;QD=12.06;ReadPosRankSum=0.775;SOR=0.552;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:79,81:160:99:1958,0,1886:45,34,43,38
chr2	55199442	.	T	A	3856.95	PASS	AC=1;AF=0.5;AN=2;DP=957;FractionInformativeReads=1;MQ=60;set=variant10-variant14-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:97,112:209:99:3138,0,2409:53,44,59,53
chr2	55199931	.	CT	C,CTT	550.76	PASS	AC=0,1;AF=0.405,0.095;AN=2;DP=13121;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-filterInvariant8-variant9-variant10-variant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:212:99:63,76,34,39
chr2	55200038	.	CAGAT	C	4545.18	PASS	AC=1;AF=0.676;AN=2;DP=8237;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,116:206:99:4588,0,3429:39,51,58,58
chr2	55200122	.	C	A	4784.16	PASS	AC=1;AF=0.5;AN=2;DP=292;FS=1.405;FractionInformativeReads=1;MQ=60;MQRankSum=3.07;QD=16.38;ReadPosRankSum=-0.246;SOR=0.794;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:165,127:292:99:4812,0,6422:83,82,67,60
chr2	55200125	.	G	T	4731.07	PASS	AC=1;AF=0.5;AN=2;DP=292;FS=0.895;FractionInformativeReads=1;MQ=60;MQRankSum=1.281;QD=16.2;ReadPosRankSum=-0.043;SOR=0.761;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:165,127:292:99:4759,0,6452:83,82,66,61
chr2	55201038	.	C	T	787.03	PASS	AC=2;AF=0.895;AN=2;DP=2638;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1462,140,0:0,0,16,31
chr2	55214912	.	C	G	296.95	PASS	AC=2;AF=0.915;AN=2;DP=436;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:445,33,0:0,0,1,10
chr2	55252177	.	C	T	34.4	PASS	AC=1;AF=0.5;AN=2;DP=22;FractionInformativeReads=1;MQ=60;set=variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:63:63,0,159:5,0,2,1
chr2	55252214	.	T	G	158.56	PASS	AC=1;AF=0.5;AN=2;DP=167;FractionInformativeReads=1;MQ=60;set=variant22-variant25-variant29-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:241,0,243:7,1,7,1
chr2	55258704	.	C	G	1111.02	PASS	AC=1;AF=0.525;AN=2;DP=1645;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant16-variant20-variant23-variant27-variant30-variant32-variant33-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,31:77:99:791,0,1348:30,16,18,13
chr2	55258851	.	T	C	1493.5	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=1.573;FractionInformativeReads=1;MQ=60;MQRankSum=-0.536;QD=13.96;ReadPosRankSum=-0.868;SOR=0.934;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,59:107:99:1522,0,1114:23,25,25,34
chr2	55276222	.	C	A	2572.81	PASS	AC=1;AF=0.5;AN=2;DP=209;FS=1.712;FractionInformativeReads=1;MQ=60;MQRankSum=-2.027;QD=12.31;ReadPosRankSum=0.377;SOR=0.85;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:100,109:209:99:2601,0,2311:56,44,65,44
chr2	55277641	.	C	G	5117.59	PASS	AC=1;AF=0.63;AN=2;DP=2884;MQ=60;set=variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant18-variant20-variant21-variant23-variant27-variant30-variant32-variant33-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,63:133:99:1685,0,1725:32,38,30,33
chr2	55277858	.	G	A	1868.69	PASS	AC=1;AF=0.5;AN=2;DP=598;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:46,37:83:99:1046,0,1163:25,21,20,17
chr2	55277953	.	T	TG	1455.31	PASS	AC=2;AF=0.932;AN=2;DP=3377;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2858,193,0:0,0,27,36
chr2	55277956	.	C	G	1464.36	PASS	AC=2;AF=0.932;AN=2;DP=3337;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2858,193,0:0,0,27,37
chr2	55404794	.	G	A	861.83	PASS	AC=1;AF=0.683;AN=2;DP=1712;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,15:40:99:349,0,603:15,10,10,5
chr2	55404925	.	C	T	646.99	PASS	AC=1;AF=0.556;AN=2;DP=1108;MQ=60;set=variant3-variant4-variant7-variant9-variant11-variant12-variant14-variant18-variant20-variant23-variant26-variant27-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:521,0,616:11,15,6,14
chr2	55407754	.	C	T	4533.6	PASS	AC=2;AF=0.989;AN=2;DP=6639;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4006,384,0:0,0,61,67
chr2	55407935	.	G	A	638.95	PASS	AC=1;AF=0.977;AN=2;DP=1078;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:296,0,354:3,8,0,8
chr2	55436488	.	GA	G	273.38	PASS	AC=1;AF=0.694;AN=2;DP=195;MQ=60;set=variant4-variant7-variant9-variant12-variant14-variant18-variant20-variant23-variant24-variant26-variant27-variant28-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:176,0,175:6,1,6,1
chr2	55436934	.	G	A	1528.35	PASS	AC=1;AF=0.556;AN=2;DP=1650;MQ=60;set=variant3-variant4-variant7-variant9-variant11-variant12-variant14-variant18-variant20-variant23-variant26-variant27-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,36:85:99:852,0,1297:22,27,19,17
chr2	55439963	.	C	A	3038.73	PASS	AC=2;AF=0.989;AN=2;DP=2870;FS=0;MQ=60;MQRankSum=-1.55;ReadPosRankSum=0.941;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1395,135,0:0,0,15,30
chr2	55459094	.	C	G	464.47	PASS	AC=2;AF=0.989;AN=2;DP=1236;FS=0;MQ=60;MQRankSum=-0.373;ReadPosRankSum=1.002;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1181,108,0:0,0,25,11
chr2	55460087	.	A	G	781.14	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.45;QD=11.32;ReadPosRankSum=-1.318;SOR=0.629;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,37:69:99:809,0,763:15,17,18,19
chr2	55461823	.	T	A	1797.88	PASS	AC=1;AF=0.917;AN=2;DP=2277;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,28:49:99:770,0,544:13,8,19,9
chr2	55463576	.	A	C	1003.42	PASS	AC=1;AF=0.594;AN=2;DP=1107;MQ=60;set=variant-variant5-variant11-variant13-variant17-variant21-variant22-variant26-variant28-variant34-variant35-variant36-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,36:66:99:1083,0,866:22,8,28,8
chr2	55463995	.	TGATAA	T	435.3	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=9.342;FractionInformativeReads=0.944;MQ=60;MQRankSum=0.035;QD=12.09;ReadPosRankSum=0.319;SOR=2.566;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:473,0,1423:7,14,1,12
chr2	55466963	.	A	G	40.73	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.198;QD=5.82;ReadPosRankSum=0.198;SOR=1.802;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,157:3,2,2,0
chr2	55470115	.	C	T	590.27	PASS	AC=1;AF=0.829;AN=2;DP=1113;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,13:19:99:325,0,133:4,2,8,5
chr2	55471407	.	T	C	3334.01	PASS	AC=2;AF=0.989;AN=2;DP=3310;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1657,156,0:0,0,22,30
chr2	55473386	.	CAT	C	679.99	PASS	AC=1;AF=0.829;AN=2;DP=1305;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:441,0,958:19,2,9,3
chr2	55473681	.	A	C	689.76	PASS	AC=2;AF=0.989;AN=2;DP=522;MQ=60;MQRankSum=1.683;ReadPosRankSum=-0.248;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:355,27,0:0,0,1,8
chr2	55489629	.	T	C	145.21	PASS	AC=1;AF=0.838;AN=2;DP=516;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:225,0,270:0,7,2,5
chr2	55490745	.	CA	C,CAA	31.45	PASS	AC=0,1;AF=0.429,0.071;AN=2;DP=168;set=filterInvariant7-variant24-variant29-filterInvariant31-variant34-variant39-variant41	GT:DP:GQ:SB	0/2:13:99:5,2,4,2
chr2	55490819	.	G	T	782.41	PASS	AC=1;AF=0.829;AN=2;DP=3151;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,40:74:99:976,0,958:24,10,26,14
chr2	55494904	.	C	G	278.84	PASS	AC=1;AF=0.531;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant11-variant17-variant21-variant22-variant26-variant28-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:381,0,455:0,12,0,10
chr2	55496529	.	G	GTGGC	714.89	PASS	AC=1;AF=0.538;AN=2;DP=642;MQ=60;set=variant-variant5-variant11-variant17-variant21-variant22-variant26-variant28-variant34-variant35-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,18:49:99:662,0,1631:10,21,7,11
chr2	55516502	.	T	C	2852.97	PASS	AC=2;AF=0.667;AN=2;DP=842;MQ=60;set=variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,260:260:99:8097,778,0:0,0,147,113
chr2	55516588	.	G	C	15550.4	PASS	AC=2;AF=0.966;AN=2;DP=21528;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,366:366:99:16266,1110,0:0,0,187,179
chr2	55516596	.	G	A	4451.99	PASS	AC=2;AF=0.667;AN=2;DP=1200;MQ=60;set=variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,372:372:99:16475,1132,0:0,0,186,186
chr2	55516723	.	C	T	15674.1	PASS	AC=2;AF=0.966;AN=2;DP=18307;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,370:370:99:11684,1109,0:0,0,189,181
chr2	55516911	.	AAGAGAGAGAG	AAGAG,A,AAGAGAG,AAGAGAGAGAGAGAG,AAGAGAGAG	5542.8	PASS	AC=0,0,1,0,1;AF=0.886,0.034,0.034,0.011,0.011;AN=2;DP=7833;set=Intersection	GT:DP:GQ:SB	3/5:125:99:0,0,51,74
chr2	55517122	.	G	A	1302.81	PASS	AC=2;AF=0.667;AN=2;DP=293;FS=0;FractionInformativeReads=1;MQ=60;set=variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3035,269,0:0,0,43,47
chr2	55517219	.	T	C	805.57	PASS	AC=1;AF=0.5;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,46:92:99:1315,0,1197:25,21,24,22
chr2	55521312	.	A	G	758.44	PASS	AC=2;AF=0.667;AN=2;DP=183;FractionInformativeReads=1;MQ=60;set=variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2451,204,0:0,0,55,13
chr2	55521399	.	T	C	1911.04	PASS	AC=1;AF=0.5;AN=2;DP=175;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.22;QD=10.92;ReadPosRankSum=-2.949;SOR=0.73;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:91,84:175:99:1939,0,2158:49,42,46,38
chr2	55521816	.	T	C	3010.89	PASS	AC=2;AF=0.667;AN=2;DP=578;FractionInformativeReads=1;MQ=60;set=variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5236,481,0:0,0,79,82
chr2	55522422	.	A	G	2265.82	PASS	AC=2;AF=0.977;AN=2;DP=2719;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2324,198,0:0,0,30,36
chr2	55522964	.	T	C	1004.57	PASS	AC=1;AF=0.5;AN=2;DP=94;FS=0.781;FractionInformativeReads=1;MQ=60;MQRankSum=-1.837;QD=10.69;ReadPosRankSum=0.361;SOR=0.785;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,42:94:99:1033,0,1459:31,21,26,16
chr2	55523308	.	C	CAA,CA,CAAA	503.29	PASS	AC=0,2,0;AF=0.762,0.143,0.071;AN=2;DP=367;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:9:27:0,0,5,4
chr2	55523309	.	C	A	548.31	PASS	AC=2;AF=0.965;AN=2;DP=390;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:27:382,27,0:0,0,5,2
chr2	55528257	.	A	C	1902.99	PASS	AC=2;AF=0.966;AN=2;DP=2352;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:99:1292,99,0:0,0,21,11
chr2	55528259	.	G	A	559.66	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.89;QD=16.96;ReadPosRankSum=-0.954;SOR=0.558;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,21:33:99:588,0,271:8,4,13,8
chr2	55535828	.	T	G	148.49	PASS	AC=2;AF=0.563;AN=2;DP=79;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant29-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:209,15,0:0,0,4,1
chr2	55544622	.	T	C	126.18	PASS	AC=2;AF=0.667;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;set=variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:358,30,0:0,0,6,4
chr2	55555593	.	T	C	292.63	PASS	AC=2;AF=0.667;AN=2;DP=59;MQ=60;set=variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:630,54,0:0,0,4,14
chr2	55559651	.	CA	C	82.4	PASS	AC=1;AF=0.5;AN=2;DP=856;MQ=60;set=filterInvariant-filterInvariant2-filterInvariant3-variant6-variant7-variant10-variant12-variant15-variant21-variant22-variant24-variant26-variant27-variant29-variant32-variant35-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:282,0,365:14,6,14,3
chr2	55566508	.	C	G	201.85	PASS	AC=2;AF=0.667;AN=2;DP=32;FractionInformativeReads=1;MQ=60;set=variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:403,30,0:0,0,9,1
chr2	55566669	.	C	G	944.88	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0.868;FractionInformativeReads=1;MQ=60;MQRankSum=-0.887;QD=12.6;ReadPosRankSum=0.483;SOR=0.839;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,40:75:99:973,0,751:18,17,22,18
chr2	55573533	.	C	T	165.77	PASS	AC=1;AF=0.5;AN=2;DP=28;FractionInformativeReads=1;MQ=60;set=variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:72:72,0,160:1,4,2,2
chr2	55576585	.	A	C	502.91	PASS	AC=2;AF=0.667;AN=2;DP=177;FractionInformativeReads=1;MQ=60;set=variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1772,168,0:0,0,36,20
chr2	55576634	.	C	T	1014.92	PASS	AC=2;AF=0.618;AN=2;DP=3546;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2753,276,0:0,0,50,42
chr2	55582601	.	T	TTTGACACA	190.41	PASS	AC=2;AF=0.618;AN=2;DP=427;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:63:945,63,0:0,0,14,3
chr2	55582684	.	A	T	730.32	PASS	AC=1;AF=0.609;AN=2;DP=1816;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:703,0,735:17,14,18,9
chr2	55589434	.	T	A	494.67	PASS	AC=2;AF=0.621;AN=2;DP=1221;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1218,107,0:0,0,29,7
chr2	55646761	.	T	C	1455.28	PASS	AC=1;AF=0.884;AN=2;DP=3677;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,39:95:99:944,0,1367:28,28,20,19
chr2	55760844	.	A	T	54.92	PASS	AC=2;AF=1;AN=2;DP=3;FS=0;FractionInformativeReads=1;MQ=60;QD=18.31;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:83,9,0:0,0,2,1
chr2	55763076	.	C	T	604.58	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.707;QD=9.16;ReadPosRankSum=-1.018;SOR=0.598;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,28:66:99:633,0,1023:20,18,14,14
chr2	55771161	.	A	G	1772.9	PASS	AC=2;AF=0.932;AN=2;DP=3054;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2564,177,0:0,0,26,32
chr2	55771169	.	A	T	441.62	PASS	AC=2;AF=0.563;AN=2;DP=508;FractionInformativeReads=1;MQ=60;set=variant12-variant26-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2484,169,0:0,0,26,30
chr2	55805440	.	T	C	1093.85	PASS	AC=2;AF=0.977;AN=2;DP=1863;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1313,132,0:0,0,19,25
chr2	55808969	.	C	T	406.41	PASS	AC=2;AF=0.932;AN=2;DP=600;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:164,12,0:0,0,0,4
chr2	55812061	.	A	G	616.34	PASS	AC=2;AF=0.586;AN=2;DP=1183;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant8-variant11-variant12-variant13-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant29-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1589,132,0:0,0,34,10
chr2	55815892	.	C	T	97.58	PASS	AC=2;AF=0.563;AN=2;DP=233;FractionInformativeReads=1;MQ=60;set=variant12-variant26-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:65:769,65,0:0,0,19,3
chr2	55815997	.	T	C	1320.45	PASS	AC=2;AF=0.536;AN=2;DP=1485;MQ=60;set=variant4-variant12-variant15-variant19-variant23-variant24-variant26-variant29-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2169,222,0:0,0,42,32
chr2	55844616	.	A	AG	4697.75	PASS	AC=2;AF=1;AN=2;DP=7394;FS=0;MQRankSum=0.655;ReadPosRankSum=-1.861;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:6407,527,0:0,0,93,82
chr2	55862355	.	A	T	1314.61	PASS	AC=2;AF=0.563;AN=2;DP=1102;FractionInformativeReads=1;MQ=60;set=variant12-variant26-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,135:135:99:4093,405,0:0,0,70,65
chr2	55862440	.	T	C	3302.94	PASS	AC=2;AF=0.932;AN=2;DP=4452;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2528,240,0:0,0,33,47
chr2	55862450	.	ATT	AT,A	925.38	PASS	AC=2,0;AF=0.727,0.045;AN=2;DP=3779;set=Intersection	GT:DP:GQ:SB	1/1:45:63:2,2,13,28
chr2	55872538	.	T	C	614.4	PASS	AC=2;AF=0.563;AN=2;DP=585;MQ=60;set=variant12-variant26-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2035,204,0:0,0,36,32
chr2	55873385	.	C	G	780.92	PASS	AC=2;AF=0.538;AN=2;DP=645;MQ=60;set=variant11-variant12-variant22-variant26-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1365,135,0:0,0,29,16
chr2	55881954	.	TCCTGCCTTGGCCTCCCAAGGCTCATG	T	665.77	PASS	AC=2;AF=0.563;AN=2;DP=387;MQ=60;set=variant12-variant26-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2818,191,0:0,0,41,22
chr2	55889062	.	G	A	616.36	PASS	AC=2;AF=0.932;AN=2;DP=831;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:662,66,0:0,0,14,8
chr2	55898929	.	A	G	511.77	PASS	AC=2;AF=0.93;AN=2;DP=405;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:492,36,0:0,0,11,1
chr2	55899092	.	T	C	498.05	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=1.13;FractionInformativeReads=1;MQ=60;MQRankSum=-1.128;QD=11.32;ReadPosRankSum=-1.222;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,23:44:99:526,0,450:9,12,11,12
chr2	55899228	.	A	T	705.24	PASS	AC=2;AF=0.932;AN=2;DP=1026;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:655,63,0:0,0,9,12
chr2	55915155	.	T	A	196.77	PASS	AC=2;AF=0.932;AN=2;DP=359;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:229,18,0:0,0,1,5
chr2	56094578	.	CT	C,CTT	44.18	PASS	AC=0,1;AF=0.25,0.321;AN=2;DP=137;MQ=60;set=variant4-variant10-variant16-variant19-variant20-variant21-variant24-variant34-variant35-variant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:7:57:0,3,1,3
chr2	56145270	.	A	G	2065.79	PASS	AC=1;AF=0.5;AN=2;DP=870;MQ=60;set=variant9-variant10-variant15-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:100,72:172:99:1806,0,2492:46,54,30,42
chr2	56150402	.	A	G	646.85	PASS	AC=1;AF=0.521;AN=2;DP=747;MQ=60;set=variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant22-variant24-variant26-variant28-variant30-variant31-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:323,0,382:5,11,2,7
chr2	56216052	.	G	A	3452.84	PASS	AC=2;AF=0.869;AN=2;DP=4042;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:2861,296,0:0,0,57,42
chr2	56227807	.	A	G	1065.02	PASS	AC=1;AF=0.5;AN=2;DP=79;FS=0.862;FractionInformativeReads=1;MQ=60;MQRankSum=0.214;QD=13.48;ReadPosRankSum=-0.91;SOR=0.536;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,46:79:99:1093,0,809:15,18,23,23
chr2	56411363	.	G	A	5865.67	PASS	AC=1;AF=0.92;AN=2;DP=7659;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:90,73:163:99:1547,0,2379:52,38,41,32
chr2	56602843	.	A	G	381.25	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.034;QD=13.62;ReadPosRankSum=0.207;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:409,0,423:11,3,11,3
chr2	56611543	.	C	CAAG	1884.61	PASS	AC=1;AF=0.574;AN=2;DP=3114;set=variant-variant3-variant4-variant6-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant35-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,55:121:99:2076,0,2877:30,36,24,31
chr2	56611725	.	C	A	2220.82	PASS	AC=1;AF=0.577;AN=2;DP=4001;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant31-variant35-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,55:104:99:1405,0,1320:24,25,30,25
chr2	56612594	.	C	T	2272.57	PASS	AC=1;AF=0.577;AN=2;DP=6675;MQ=60;set=variant-variant3-variant4-variant6-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant29-variant31-variant35-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:135,80:215:99:1903,0,3965:64,71,38,42
chr2	56612727	.	AAGT	A	6718.63	PASS	AC=1;AF=0.5;AN=2;DP=360;FS=1.732;FractionInformativeReads=0.992;MQ=60;MQRankSum=2.542;QD=18.66;ReadPosRankSum=1.976;SOR=0.807;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:183,174:357:99:6756,0,8098:96,87,96,78
chr2	58135010	.	C	G	259.69	PASS	AC=1;AF=0.736;AN=2;DP=745;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:435,0,433:4,5,5,6
chr2	58135011	.	G	A	259.69	PASS	AC=1;AF=0.736;AN=2;DP=731;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:435,0,433:4,5,5,6
chr2	58135023	.	T	C	215.96	PASS	AC=1;AF=0.611;AN=2;DP=463;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:280,0,180:1,5,4,6
chr2	58275666	.	G	A	770.53	PASS	AC=2;AF=0.808;AN=2;DP=3637;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2525,252,0:0,0,42,42
chr2	58316814	.	A	G	1066.7	PASS	AC=1;AF=0.583;AN=2;DP=2533;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,44:72:99:1247,0,708:18,10,27,17
chr2	58362161	.	G	A	715.64	PASS	AC=1;AF=0.603;AN=2;DP=852;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:500,0,717:19,3,14,3
chr2	58381785	.	T	C	695.91	PASS	AC=1;AF=0.625;AN=2;DP=727;MQ=60;set=variant-variant5-variant6-variant7-variant13-variant16-variant17-variant19-variant20-variant23-variant26-variant28-variant30-variant31-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:549,0,371:10,4,11,7
chr2	58388696	.	A	G	1454.87	PASS	AC=1;AF=0.684;AN=2;DP=4057;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,51:102:99:1221,0,1325:28,23,26,25
chr2	58392789	.	T	C	470.04	PASS	AC=1;AF=0.625;AN=2;DP=703;MQ=60;set=variant-variant5-variant6-variant7-variant13-variant16-variant17-variant19-variant20-variant23-variant26-variant28-variant30-variant31-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:273,0,388:10,3,7,4
chr2	58392797	.	TTTA	T	634.46	PASS	AC=1;AF=0.6;AN=2;DP=798;MQ=60;set=variant-variant5-variant6-variant7-variant13-variant16-variant17-variant19-variant20-variant23-variant26-variant28-variant30-variant31-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:480,0,717:12,3,9,4
chr2	58453843	.	G	GA	318.04	PASS	AC=1;AF=0.575;AN=2;DP=936;MQ=60;set=variant-variant5-variant6-variant7-variant13-variant16-variant17-variant19-variant20-variant23-variant26-variant28-variant30-variant31-variant34-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:382,0,365:10,8,11,9
chr2	59230996	.	A	C	133.34	PASS	AC=1;AF=0.636;AN=2;DP=439;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant11-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:222,0,358:9,2,6,2
chr2	59241436	.	A	G	1512.3	PASS	AC=1;AF=0.671;AN=2;DP=4111;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,48:101:99:1397,0,1318:30,23,35,13
chr2	59241688	.	A	AGAT	421.29	PASS	AC=1;AF=0.676;AN=2;DP=692;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,14:19:99:573,0,211:1,4,2,12
chr2	60614572	.	G	A	2027.77	PASS	AC=1;AF=0.583;AN=2;DP=3809;MQ=60;set=variant2-variant4-variant5-variant11-variant12-variant13-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,89:149:99:2432,0,1469:30,30,49,40
chr2	60678501	.	G	A	2638.69	PASS	AC=1;AF=0.5;AN=2;DP=1214;MQ=60;set=variant16-variant27-variant29-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:85,76:161:99:1985,0,2342:59,26,51,25
chr2	60679003	.	CAGTT	C	5384.71	PASS	AC=1;AF=0.5;AN=2;DP=1666;MQ=60;set=variant16-variant27-variant29-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:140,85:225:99:3138,0,6907:62,78,34,51
chr2	60679197	.	ATGG	A	2383.18	PASS	AC=1;AF=0.5;AN=2;DP=806;MQ=60;set=variant16-variant27-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,62:134:99:2322,0,2728:39,33,35,27
chr2	60679226	.	G	A	1819.03	PASS	AC=2;AF=0.712;AN=2;DP=6093;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:4735,426,0:0,0,79,63
chr2	60679942	.	T	C	874.26	PASS	AC=1;AF=0.563;AN=2;DP=830;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant8-variant9-variant10-variant12-variant13-variant21-variant22-variant23-variant26-variant35-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:747,0,504:10,12,11,13
chr2	60685022	.	G	C	448.68	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=6.483;FractionInformativeReads=1;MQ=60;MQRankSum=0.325;QD=11.22;ReadPosRankSum=0.813;SOR=1.173;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:477,0,562:9,12,12,7
chr2	60687959	.	A	G	5902.68	PASS	AC=2;AF=0.73;AN=2;DP=7112;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,168:168:99:5750,504,0:0,0,70,98
chr2	60688968	.	A	G	227.62	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1393;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:90,46:136:99:300,0,1643:71,19,0,46
chr2	60689748	.	A	G	319.82	PASS	AC=2;AF=0.742;AN=2;DP=559;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:852,60,0:0,0,2,18
chr2	60768978	.	G	A	786.99	PASS	AC=1;AF=0.743;AN=2;DP=714;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:135,0,365:8,4,4,2
chr2	60997463	.	G	A	286.04	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=1.576;FractionInformativeReads=1;MQ=60;MQRankSum=0.366;QD=10.59;ReadPosRankSum=2.074;SOR=1.051;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:314,0,339:10,5,9,3
chr2	61008036	.	C	T	1344.98	PASS	AC=2;AF=1;AN=2;DP=1493;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1415,120,0:0,0,7,33
chr2	61118739	.	A	G	713.02	PASS	AC=1;AF=0.55;AN=2;DP=428;MQ=60;set=variant4-variant8-variant9-variant10-variant14-variant15-variant16-variant20-variant21-variant25-variant26-variant29-variant30-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:429,0,377:10,1,11,2
chr2	61121492	.	G	A	1102.98	PASS	AC=2;AF=0.966;AN=2;DP=1116;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1045,84,0:0,0,23,5
chr2	61128268	.	G	A	1465.75	PASS	AC=1;AF=0.55;AN=2;DP=519;MQ=60;set=variant4-variant8-variant9-variant10-variant14-variant15-variant16-variant20-variant21-variant25-variant26-variant29-variant30-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:309,0,218:2,4,0,8
chr2	61128284	.	T	C	647.28	PASS	AC=1;AF=0.742;AN=2;DP=483;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:159,0,128:1,2,0,4
chr2	61128285	.	CTTT	CT,CTTTT,C	1042.73	PASS	AC=0,0,1;AF=0.3,0.125,0.225;AN=2;DP=363;set=variant4-variant7-variant8-variant9-variant10-variant12-variant15-variant22-variant23-variant25-variant26-variant27-variant29-variant32-variant34-variant35-variant36-variant40-variant41-variant43	GT:DP:GQ:SB	0/3:7:99:1,2,0,4
chr2	61150551	.	C	T	2200.59	PASS	AC=1;AF=0.5;AN=2;DP=227;FS=1.044;FractionInformativeReads=1;MQ=60;MQRankSum=0.738;QD=9.69;ReadPosRankSum=0.995;SOR=0.779;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:129,98:227:99:2229,0,3138:54,75,39,59
chr2	61175312	.	T	C	2472.33	PASS	AC=1;AF=0.75;AN=2;DP=5057;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,54:113:99:1380,0,1495:28,31,31,23
chr2	61189740	.	T	A	85.41	PASS	AC=2;AF=0.607;AN=2;DP=149;FractionInformativeReads=1;set=variant2-variant3-variant6-variant13-variant16-variant21-variant25-variant26-variant27-variant32-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:354,33,0:0,0,8,3
chr2	61189929	.	C	T	364.56	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:716,0,785:16,13,15,12
chr2	61191995	.	G	C	88.71	PASS	AC=2;AF=0.65;AN=2;DP=138;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant11-variant13-variant14-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr2	61244663	.	A	C	879.21	PASS	AC=1;AF=0.536;AN=2;DP=1157;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant15-variant19-variant24-variant33-variant34-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,31:71:99:896,0,1110:22,18,14,17
chr2	61245198	.	A	G	598.44	PASS	AC=1;AF=0.5;AN=2;DP=144;FractionInformativeReads=1;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,24:48:99:708,0,764:11,13,8,16
chr2	61246145	.	G	A	2240.22	PASS	AC=2;AF=0.643;AN=2;DP=5085;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant29-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:5120,478,0:0,0,58,102
chr2	61276263	.	G	A	10489.4	PASS	AC=2;AF=1;AN=2;DP=14406;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,344:344:99:10732,1030,0:0,0,151,193
chr2	61293025	.	A	G	276.08	PASS	AC=1;AF=0.5;AN=2;DP=132;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,21:47:99:463,0,584:14,12,11,10
chr2	61293262	.	C	A	250.14	PASS	AC=1;AF=0.5;AN=2;DP=89;FractionInformativeReads=1;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:345,0,503:5,12,5,11
chr2	61293289	.	A	G	292.31	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:312,0,265:3,6,5,7
chr2	61296052	.	T	C	220.63	PASS	AC=1;AF=0.5;AN=2;DP=75;FractionInformativeReads=1;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:400,0,208:6,4,9,8
chr2	61304002	.	A	G	537.6	PASS	AC=2;AF=0.73;AN=2;DP=1148;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1111,102,0:0,0,24,10
chr2	61304377	.	A	T	357.98	PASS	AC=1;AF=0.559;AN=2;DP=315;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant10-variant14-variant15-variant19-variant20-variant21-variant23-variant25-variant26-variant29-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:323,0,227:0,6,1,9
chr2	61308517	.	A	G	271.56	PASS	AC=2;AF=0.73;AN=2;DP=825;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:571,54,0:0,0,12,6
chr2	61315565	.	T	C	429.62	PASS	AC=1;AF=0.5;AN=2;DP=129;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:408,0,712:11,16,10,10
chr2	61324784	.	A	G	291.01	PASS	AC=1;AF=0.571;AN=2;DP=112;FractionInformativeReads=1;MQ=60;set=variant13-variant15-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:144,0,232:6,2,4,0
chr2	61325091	.	C	T	79.45	PASS	AC=1;AF=0.5;AN=2;DP=33;FractionInformativeReads=1;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:221,0,145:1,4,3,6
chr2	61349446	.	G	A	2279.35	PASS	AC=2;AF=0.768;AN=2;DP=3403;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2935,255,0:0,0,43,42
chr2	61349515	.	C	G	2304.49	PASS	AC=1;AF=0.538;AN=2;DP=1809;FractionInformativeReads=1;set=variant9-variant10-variant11-variant16-variant17-variant18-variant22-variant34-variant35-variant36-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,84:151:99:2245,0,1659:39,28,53,31
chr2	61349744	.	G	A	3210.59	PASS	AC=1;AF=0.5;AN=2;DP=614;MQ=60;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:100,108:208:99:3155,0,2814:58,42,60,48
chr2	61350137	.	A	G	4623.85	PASS	AC=1;AF=0.548;AN=2;DP=8341;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:131,116:247:99:3103,0,3238:48,83,36,80
chr2	61351187	.	T	C	115.64	PASS	AC=2;AF=0.706;AN=2;DP=499;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:48:712,48,0:0,0,11,4
chr2	61351188	.	T	C	115.64	PASS	AC=2;AF=0.706;AN=2;DP=510;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:48:712,48,0:0,0,11,4
chr2	61351189	.	T	A	115.64	PASS	AC=2;AF=0.706;AN=2;DP=519;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:712,48,0:0,0,12,4
chr2	61384906	.	T	C	260.58	PASS	AC=1;AF=0.559;AN=2;DP=747;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:471,0,298:8,3,11,3
chr2	61385100	.	G	A	1337.41	PASS	AC=1;AF=0.565;AN=2;DP=2663;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,66:108:99:2562,0,2131:21,21,32,34
chr2	61385105	.	G	C	1286.26	PASS	AC=1;AF=0.565;AN=2;DP=2628;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,63:104:99:2584,0,2128:21,20,30,33
chr2	61385248	.	A	G	719.59	PASS	AC=1;AF=0.559;AN=2;DP=2415;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,26:67:99:694,0,993:19,22,10,16
chr2	61389737	.	T	G	707.84	PASS	AC=1;AF=0.559;AN=2;DP=1486;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,11:33:99:304,0,579:8,14,2,9
chr2	61389799	.	G	A	187.66	PASS	AC=1;AF=0.565;AN=2;DP=595;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:308,0,505:6,9,3,6
chr2	61404409	.	A	G	43.69	PASS	AC=1;AF=0.571;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant10-variant14-variant25-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:93:93,0,251:6,6,3,2
chr2	61404452	.	GCGCGTCCC	GCGCGTCCCCGCGTCCC,G	78.98	PASS	AC=1,1;AF=0.591,0.023;AN=2;DP=201;FS=0;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant19-variant22-variant23-variant25-variant27-variant28-variant32-variant36-variant39-variant41	GT:DP:GQ:SB	2/1:11:99:0,0,4,7
chr2	61404514	.	G	A	48.15	PASS	AC=1;AF=0.583;AN=2;DP=363;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:196,0,109:2,2,4,2
chr2	61404931	.	A	T	538.78	PASS	AC=1;AF=0.568;AN=2;DP=1404;MQ=60;set=variant2-variant4-variant9-variant10-variant14-variant16-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant29-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:884,0,728:19,11,22,13
chr2	61405723	.	G	A	927.6	PASS	AC=1;AF=0.536;AN=2;DP=860;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant9-variant11-variant16-variant17-variant18-variant20-variant21-variant22-variant35-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:440,0,598:12,12,8,9
chr2	61405795	.	G	T	1404.06	PASS	AC=2;AF=0.73;AN=2;DP=2865;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2389,237,0:0,0,45,34
chr2	61412045	.	G	A	508.85	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=3.01;FractionInformativeReads=1;MQ=60;MQRankSum=-0.605;QD=11.31;ReadPosRankSum=0.765;SOR=0.318;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:537,0,787:5,20,6,14
chr2	61412060	.	G	A	409.71	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=3.581;FractionInformativeReads=1;MQ=60;MQRankSum=1.567;QD=12.42;ReadPosRankSum=-1.063;SOR=0.25;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,16:33:99:438,0,526:3,14,5,11
chr2	61412559	.	C	T	428	PASS	AC=2;AF=0.766;AN=2;DP=340;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:29:310,29,0:0,0,6,4
chr2	61413723	.	A	G	3806.65	PASS	AC=2;AF=0.817;AN=2;DP=4981;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3233,306,0:0,0,43,59
chr2	61414639	.	GCAAT	G,GCAATCAAT	4038.64	PASS	AC=1,0;AF=0.805,0.012;AN=2;DP=3710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:96:99:27,28,19,22
chr2	61415492	.	A	G	783.78	PASS	AC=1;AF=0.583;AN=2;DP=2142;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,30:63:99:738,0,846:22,11,17,13
chr2	61417617	.	A	G	1504.48	PASS	AC=1;AF=0.722;AN=2;DP=3678;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,49:86:99:1195,0,993:19,18,25,24
chr2	61439206	.	C	T	855.17	PASS	AC=1;AF=0.719;AN=2;DP=531;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:234,0,199:0,6,0,6
chr2	61450454	.	A	G	478.29	PASS	AC=1;AF=0.625;AN=2;DP=1482;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:494,0,498:7,13,10,11
chr2	61456592	.	TAA	TA,T	31.19	PASS	AC=0,2;AF=0.25,0.375;AN=2;DP=29;MQ=60;set=variant15-variant25-variant27-variant41	GT:DP:GQ:SB	2/2:5:1:0,1,4,0
chr2	61483715	.	A	T	279.77	PASS	AC=1;AF=0.815;AN=2;DP=293;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:152,0,211:1,4,1,5
chr2	61483725	.	T	A	330.38	PASS	AC=1;AF=0.804;AN=2;DP=247;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:221,0,205:0,4,3,5
chr2	61484556	.	T	C	397.01	PASS	AC=1;AF=0.726;AN=2;DP=345;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:224,0,270:0,7,1,6
chr2	61492815	.	T	C	48	PASS	AC=1;AF=0.5;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.358;QD=9.6;ReadPosRankSum=0.358;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:34:76,0,34:1,1,1,2
chr2	61505230	.	T	C	683.41	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=1.192;FractionInformativeReads=1;MQ=60;MQRankSum=-1.951;QD=14.54;ReadPosRankSum=0.394;SOR=0.518;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:712,0,672:16,6,17,8
chr2	61522047	.	T	C	64.71	PASS	AC=1;AF=0.654;AN=2;DP=368;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant12-variant13-variant14-variant15-variant18-variant19-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:187,0,237:6,2,5,1
chr2	61522123	.	T	C	1096.3	PASS	AC=2;AF=0.989;AN=2;DP=2092;MQ=60;MQRankSum=0.3;ReadPosRankSum=1.004;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1430,155,0:0,0,30,22
chr2	61538602	.	G	GAAAAGAGAAAGAAAAAGAAAA,GAAAAGAGAAAGAAAAAGAAAAA	186.37	PASS	AC=2,0;AF=0.875,0.013;AN=2;DP=265;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:2:17:0,0,2,0
chr2	61552379	.	A	AT	128.6	PASS	AC=1;AF=0.786;AN=2;DP=64;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant13-variant19-variant24-variant25-variant28-variant31-variant34-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:57:132,0,57:2,0,3,1
chr2	61552484	.	T	A	572.13	PASS	AC=1;AF=0.744;AN=2;DP=1010;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:256,0,330:8,8,6,4
chr2	61575308	.	A	G	5083.97	PASS	AC=2;AF=0.977;AN=2;DP=6666;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,178:178:99:5779,534,0:0,0,93,85
chr2	61576517	.	G	A	2632.37	PASS	AC=2;AF=1;AN=2;DP=3511;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2357,222,0:0,0,29,45
chr2	61576530	.	C	A	789.79	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0.944;FractionInformativeReads=1;MQ=60;MQRankSum=-0.564;QD=11.61;ReadPosRankSum=-0.319;SOR=0.924;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:818,0,855:14,19,13,22
chr2	61622251	.	C	T	212.82	PASS	AC=1;AF=0.609;AN=2;DP=548;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant9-variant10-variant14-variant15-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:402,0,651:13,8,6,11
chr2	61644538	.	G	C	548.09	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=5.401;FractionInformativeReads=1;MQ=60;MQRankSum=-0.734;QD=8.43;ReadPosRankSum=1.735;SOR=1.428;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,23:65:99:576,0,1186:17,25,6,17
chr2	61648932	.	A	G,ACG,ACACG	533.78	PASS	AC=1,0,0;AF=0.345,0.241,0.069;AN=2;DP=471;set=variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:19:99:9,4,4,2
chr2	61713209	.	GGAAAATC	G	456.11	PASS	AC=1;AF=0.6;AN=2;DP=774;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:99:171,0,2030:2,11,0,5
chr2	61713218	.	T	A	467.75	PASS	AC=1;AF=0.6;AN=2;DP=693;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:174,0,2009:1,10,0,5
chr2	61713220	.	T	G	412.58	PASS	AC=1;AF=0.6;AN=2;DP=665;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:177,0,1918:1,10,0,5
chr2	61722519	.	G	GA	979.14	PASS	AC=1;AF=0.73;AN=2;DP=2002;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,10:46:99:179,0,985:19,17,6,4
chr2	61729258	.	A	G	1752.22	PASS	AC=1;AF=0.73;AN=2;DP=2833;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,22:66:99:791,0,2451:23,21,12,10
chr2	61729268	.	T	C	1681	PASS	AC=1;AF=0.73;AN=2;DP=2919;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,23:67:99:821,0,2526:23,21,13,10
chr2	61749690	.	C	T	673.31	PASS	AC=1;AF=0.73;AN=2;DP=1718;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:566,0,561:13,9,12,12
chr2	61749716	.	C	T	608.39	PASS	AC=1;AF=0.73;AN=2;DP=2087;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:589,0,594:13,12,12,14
chr2	61761169	.	G	A	2578.68	PASS	AC=2;AF=0.977;AN=2;DP=3132;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1825,141,0:0,0,32,15
chr2	61761390	.	G	C	2212.41	PASS	AC=1;AF=0.5;AN=2;DP=232;FS=3.758;FractionInformativeReads=1;MQ=60;MQRankSum=1.345;QD=9.54;ReadPosRankSum=0.342;SOR=0.489;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:130,102:232:99:2241,0,3392:50,80,45,57
chr2	61764140	.	C	T	392.69	PASS	AC=1;AF=0.743;AN=2;DP=2675;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,32:72:99:836,0,1140:17,23,14,18
chr2	61765074	.	G	A	820.59	PASS	AC=1;AF=0.667;AN=2;DP=1335;FractionInformativeReads=1;set=variant2-variant4-variant6-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant29-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,17:47:99:344,0,749:18,12,7,10
chr2	61765175	.	GGCC	GC,G	853.98	PASS	AC=1,0;AF=0.62,0.02;AN=2;DP=695;MQ=60;set=variant2-variant4-variant6-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant32-variant33-variant35-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:26:99:6,11,2,7
chr2	62052380	.	A	G	2629.88	PASS	AC=1;AF=0.593;AN=2;DP=3437;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant17-variant18-variant20-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,50:114:99:1323,0,1962:43,21,30,20
chr2	62053290	.	A	G	1702.71	PASS	AC=1;AF=0.593;AN=2;DP=2111;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant17-variant18-variant20-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,38:77:99:1119,0,1128:20,19,26,12
chr2	62063093	.	TA	T	721.45	PASS	AC=1;AF=0.614;AN=2;DP=2245;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,40:48:46:715,0,46:5,3,27,13
chr2	62066417	.	ATATAT	A	171.57	PASS	AC=1;AF=0.667;AN=2;DP=213;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant17-variant20-variant23-variant26-variant28-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:198,0,201:3,1,4,1
chr2	62066927	.	A	G	2581.82	PASS	AC=2;AF=0.955;AN=2;DP=3671;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2229,204,0:0,0,33,35
chr2	62069358	.	T	C	1262.67	PASS	AC=1;AF=0.5;AN=2;DP=1588;MQ=60;set=variant-variant10-variant12-variant14-variant15-variant19-variant21-variant22-variant25-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,58:121:99:1416,0,1454:34,29,30,28
chr2	62069528	.	C	T	820.61	PASS	AC=1;AF=0.5;AN=2;DP=1028;MQ=60;set=variant-variant4-variant5-variant9-variant10-variant12-variant14-variant15-variant17-variant19-variant21-variant22-variant25-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,37:66:99:931,0,770:13,16,16,21
chr2	62073918	.	C	T	804.29	PASS	AC=1;AF=0.667;AN=2;DP=3734;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,41:96:99:1070,0,1313:32,23,28,13
chr2	62074140	.	A	AAC	661.08	PASS	AC=2;AF=0.955;AN=2;DP=861;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:63:922,63,0:0,0,2,18
chr2	62081012	.	A	C	4205.8	PASS	AC=2;AF=0.955;AN=2;DP=9980;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,228:228:99:7046,683,0:0,0,125,103
chr2	62081217	.	A	G	3577.53	PASS	AC=2;AF=0.955;AN=2;DP=4510;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2362,201,0:0,0,22,45
chr2	62095994	.	A	G	599.79	PASS	AC=2;AF=0.955;AN=2;DP=1001;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:562,60,0:0,0,9,11
chr2	62098950	.	C	G	199.93	PASS	AC=1;AF=0.5;AN=2;DP=20;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:148,0,241:6,0,3,2
chr2	62098993	.	C	T	470.9	PASS	AC=1;AF=0.593;AN=2;DP=965;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant17-variant18-variant20-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,12:28:99:318,0,381:10,6,8,4
chr2	62099156	.	T	C	489.67	PASS	AC=1;AF=0.593;AN=2;DP=1176;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant17-variant18-variant20-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,14:32:99:369,0,420:8,10,6,8
chr2	62104343	.	C	T	82.7	PASS	AC=1;AF=0.676;AN=2;DP=373;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:147,0,258:0,8,2,4
chr2	62104660	.	TA	T,TAA	228.24	PASS	AC=1,0;AF=0.554,0.018;AN=2;DP=1100;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant17-variant18-variant20-filterInvariant21-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant40-variant41-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:21:99:3,8,4,6
chr2	62107376	.	T	TC	1468.54	PASS	AC=2;AF=0.955;AN=2;DP=1632;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1535,117,0:0,0,26,13
chr2	62107632	.	G	A	185.17	PASS	AC=1;AF=0.558;AN=2;DP=749;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:533,0,250:5,6,2,14
chr2	62110571	.	G	T	408.75	PASS	AC=1;AF=0.528;AN=2;DP=410;set=variant-variant4-variant5-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant21-variant22-variant25-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:164,0,473:13,5,6,2
chr2	62112221	.	G	GA	1070.81	PASS	AC=1;AF=0.654;AN=2;DP=2468;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:556,0,796:9,12,6,11
chr2	62112222	.	G	A	1079.86	PASS	AC=1;AF=0.667;AN=2;DP=2391;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,17:38:99:556,0,796:9,12,5,12
chr2	62112246	.	C	CT	357.68	PASS	AC=1;AF=0.654;AN=2;DP=1687;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:97:316,0,97:2,4,6,9
chr2	62116031	.	CTT	CT,C	55.86	PASS	AC=0,1;AF=0.417,0.139;AN=2;DP=286;MQ=60;set=variant-variant3-variant4-variant5-variant9-variant14-variant15-variant19-variant22-variant24-variant26-variant29-variant30-variant32-variant38-variant39-variant40-variant41	GT:DP:GQ:SB	0/2:9:74:0,4,0,5
chr2	62133115	.	C	T	118.61	PASS	AC=1;AF=0.5;AN=2;DP=83;FractionInformativeReads=1;MQ=60;set=variant11-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:325,0,304:2,8,1,9
chr2	62196048	.	G	A	152.45	PASS	AC=1;AF=0.75;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.72;ReadPosRankSum=1.38;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,123:3,1,2,0
chr2	62282491	.	G	A	747.8	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.542;QD=25.79;ReadPosRankSum=-0.825;SOR=0.896;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,20:29:99:776,0,400:5,4,12,8
chr2	62282494	.	A	T	747.8	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.522;QD=25.79;ReadPosRankSum=0.495;SOR=0.896;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,20:29:99:776,0,400:5,4,12,8
chr2	62363164	.	C	T	2228.51	PASS	AC=1;AF=0.5;AN=2;DP=444;FractionInformativeReads=1;MQ=60;set=variant11-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,55:98:99:1585,0,1115:16,27,23,32
chr2	62373915	.	T	C	863.73	PASS	AC=2;AF=0.63;AN=2;DP=2663;set=variant-variant3-variant4-filterInvariant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant24-variant25-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2240,180,0:0,0,29,31
chr2	62448855	.	G	A	59.18	PASS	AC=1;AF=0.5;AN=2;DP=137;FractionInformativeReads=1;MQ=60;set=variant7-variant8-variant11-variant15-variant34-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:235,0,312:8,0,7,2
chr2	62450743	.	T	C	4594.48	PASS	AC=1;AF=0.5;AN=2;DP=3428;MQ=60;set=variant7-variant8-variant11-variant15-variant25-variant34-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:143,156:299:99:4071,0,3918:89,54,79,77
chr2	62727445	.	G	A	1498.53	PASS	AC=1;AF=0.711;AN=2;DP=4227;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,55:132:99:1125,0,1813:40,37,29,26
chr2	62727902	.	C	T	1068.23	PASS	AC=1;AF=0.567;AN=2;DP=858;MQ=60;set=variant2-variant10-variant11-variant14-variant17-variant18-variant19-variant22-variant23-variant28-variant30-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:835,0,1206:29,10,23,4
chr2	62727986	.	C	A	2317.15	PASS	AC=1;AF=0.583;AN=2;DP=2100;MQ=60;set=variant2-variant10-variant11-variant14-variant17-variant18-variant19-variant23-variant28-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:95,88:183:99:2372,0,2527:60,35,54,34
chr2	62728046	.	G	A	3301.49	PASS	AC=1;AF=0.583;AN=2;DP=3413;MQ=60;set=variant2-variant10-variant11-variant14-variant17-variant18-variant19-variant23-variant28-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:160,140:300:99:3478,0,3983:92,68,81,59
chr2	62728105	.	A	G	4033.44	PASS	AC=1;AF=0.583;AN=2;DP=4599;MQ=60;set=variant2-variant10-variant11-variant14-variant17-variant18-variant19-variant23-variant28-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:191,174:365:99:6546,0,7496:108,83,94,80
chr2	62728112	.	CA	C	4016.25	PASS	AC=1;AF=0.583;AN=2;DP=4788;MQ=60;set=variant2-variant10-variant11-variant14-variant17-variant18-variant19-variant23-variant28-variant30-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:205,180:385:99:6654,0,7797:112,93,99,81
chr2	62729674	.	T	C	1975.41	PASS	AC=1;AF=0.881;AN=2;DP=2867;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,32:55:99:935,0,508:12,11,12,20
chr2	62729747	.	G	GA	2105.85	PASS	AC=1;AF=0.881;AN=2;DP=3045;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:736,0,676:12,15,13,16
chr2	62738883	.	C	T	562.37	PASS	AC=1;AF=0.756;AN=2;DP=2075;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,19:54:99:415,0,911:21,14,13,6
chr2	62738931	.	G	C	766.02	PASS	AC=1;AF=0.756;AN=2;DP=3080;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,25:77:99:575,0,1376:27,25,16,9
chr2	62739135	.	A	C	508.23	PASS	AC=1;AF=0.881;AN=2;DP=570;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:309,0,170:0,5,1,7
chr2	63170921	.	C	G	345.95	PASS	AC=1;AF=0.5;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant17-variant18-variant19-variant24-variant25-variant26-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:339,0,605:16,6,10,3
chr2	63215054	.	A	G	658.03	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=1.198;FractionInformativeReads=1;MQ=60;MQRankSum=-1.279;QD=14.96;ReadPosRankSum=1.351;SOR=0.922;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,25:44:99:686,0,428:12,7,17,8
chr2	63272724	.	T	C	5609.83	PASS	AC=1;AF=0.545;AN=2;DP=5288;MQ=60;set=variant9-variant11-variant17-variant18-variant19-variant24-variant25-variant26-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:223,223:446:99:5509,0,5642:125,98,115,108
chr2	63278594	.	G	A	254.02	PASS	AC=1;AF=0.5;AN=2;DP=128;FractionInformativeReads=1;MQ=60;set=variant9-variant18-variant26-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:211,0,288:6,7,1,7
chr2	63283178	.	C	G	3975.09	PASS	AC=1;AF=0.5;AN=2;DP=4238;MQ=60;set=variant9-variant11-variant17-variant18-variant19-variant23-variant24-variant25-variant26-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:158,145:303:99:3504,0,3969:80,78,72,73
chr2	63284022	.	G	A	781.37	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.501;QD=11.01;ReadPosRankSum=0.546;SOR=0.65;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,35:71:99:810,0,985:14,22,14,21
chr2	63284267	.	C	CAT	116.9	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=0;MQ=60;set=variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:283,0,456:7,7,5,5
chr2	63380809	.	G	A	61.77	PASS	AC=2;AF=0.914;AN=2;DP=96;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:80,6,0:0,0,0,2
chr2	63486429	.	C	T	793.21	PASS	AC=2;AF=0.629;AN=2;DP=2606;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2333,216,0:0,0,43,29
chr2	63540523	.	A	T	812.02	PASS	AC=2;AF=0.725;AN=2;DP=928;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1266,108,0:0,0,7,29
chr2	63605493	.	C	T	192.66	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.936;QD=13.76;ReadPosRankSum=1.027;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:221,0,223:6,1,6,1
chr2	63605772	.	A	G	528.08	PASS	AC=1;AF=0.718;AN=2;DP=889;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:340,0,338:2,8,5,8
chr2	63609017	.	A	T	1094.1	PASS	AC=1;AF=0.629;AN=2;DP=1156;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,15:35:99:419,0,596:13,7,12,3
chr2	63631889	.	A	C	1101.87	PASS	AC=1;AF=0.591;AN=2;DP=1030;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:363,0,464:3,12,2,10
chr2	63664829	.	A	G	233.51	PASS	AC=1;AF=0.579;AN=2;DP=249;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant9-variant11-variant17-variant18-variant19-variant22-variant24-variant26-variant28-variant29-variant33-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:226,0,142:3,1,5,2
chr2	63669625	.	T	C	6557.85	PASS	AC=1;AF=0.731;AN=2;DP=7041;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,94:190:99:2483,0,2603:43,53,48,46
chr2	63714670	.	T	C	602.73	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0.934;FractionInformativeReads=1;MQ=60;MQRankSum=-0.338;QD=8.61;ReadPosRankSum=-0.193;SOR=0.649;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,27:70:99:631,0,997:23,20,13,14
chr2	63720210	.	A	G	154.82	PASS	AC=1;AF=0.73;AN=2;DP=320;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:134,0,145:0,4,0,4
chr2	63798333	.	C	T	1982.59	PASS	AC=1;AF=0.718;AN=2;DP=2174;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,16:48:99:362,0,819:19,13,8,8
chr2	63816672	.	C	G	912.56	PASS	AC=1;AF=0.718;AN=2;DP=780;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,9:10:16:291,0,16:0,1,2,7
chr2	63820546	.	AT	A	74.57	PASS	AC=1;AF=0.579;AN=2;DP=380;MQ=60;set=variant-variant5-variant8-variant9-variant11-variant17-variant18-variant19-variant22-variant24-variant26-variant28-variant29-variant33-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:342,0,256:10,2,10,5
chr2	63822785	.	T	C	2099.61	PASS	AC=2;AF=0.744;AN=2;DP=3070;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2187,216,0:0,0,35,37
chr2	63826164	.	C	G	68.2	PASS	AC=1;AF=0.579;AN=2;DP=251;MQ=60;set=variant-variant5-variant8-variant9-variant11-variant17-variant18-variant19-variant22-variant24-variant26-variant28-variant29-variant33-variant35-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:190,0,248:7,0,5,1
chr2	63849394	.	G	A	653.73	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=1.028;FractionInformativeReads=1;MQ=60;MQRankSum=-0.872;QD=11.08;ReadPosRankSum=-0.826;SOR=0.523;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,29:59:99:682,0,778:20,10,18,11
chr2	63850098	.	G	C	548.53	PASS	AC=1;AF=0.563;AN=2;DP=997;FractionInformativeReads=1;set=variant3-variant6-variant7-variant10-variant12-variant13-variant14-variant21-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:486,0,370:3,10,3,12
chr2	64069732	.	G	A	906.41	PASS	AC=1;AF=0.793;AN=2;DP=2985;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,40:75:99:1182,0,950:12,23,12,28
chr2	64082654	.	GTTTTT	GTTT,GTTTTTTT,GTTTTTT,GTTTT,GT,GTTTTTTTT,GTT,G	74.11	PASS	AC=0,0,0,1,0,0,0,0;AF=0.111,0.093,0.093,0.056,0.111,0.019,0.093,0.019;AN=2;DP=660;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant32-variant33-variant37-variant41-filterInvariant42-filterInvariant43	GT:DP:GQ:SB	0/4:29:48:1,7,5,16
chr2	64085114	.	G	A	1328.43	PASS	AC=1;AF=0.78;AN=2;DP=4477;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,33:115:99:706,0,1910:42,40,19,14
chr2	64089748	.	C	A	450.24	PASS	AC=1;AF=0.78;AN=2;DP=974;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,18:27:99:638,0,263:7,2,16,2
chr2	64117178	.	T	TA	1017.96	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=0.97;FractionInformativeReads=1;MQ=60;MQRankSum=-0.335;QD=15.66;ReadPosRankSum=0.742;SOR=0.569;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:1055,0,1142:23,11,20,11
chr2	64117423	.	G	A	304.68	PASS	AC=1;AF=0.545;AN=2;DP=120;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant16-variant22-variant23-variant30-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:231,0,1509:1,6,0,6
chr2	64117425	.	G	T	304.68	PASS	AC=1;AF=0.545;AN=2;DP=117;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant16-variant22-variant23-variant30-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:231,0,1509:0,6,0,6
chr2	64117426	.	C	A	304.68	PASS	AC=1;AF=0.545;AN=2;DP=114;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant10-variant15-variant16-variant22-variant23-variant30-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:231,0,1509:0,6,0,6
chr2	64117428	.	AC	A	295.64	PASS	AC=1;AF=0.55;AN=2;DP=101;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant15-variant16-variant22-variant23-variant30-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:234,0,1488:0,6,0,6
chr2	64117431	.	T	TAG	253.65	PASS	AC=1;AF=0.55;AN=2;DP=96;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant15-variant16-variant22-variant23-variant30-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:234,0,1488:0,5,0,6
chr2	64124722	.	C	A	357.28	PASS	AC=1;AF=0.559;AN=2;DP=660;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant11-variant17-variant18-variant19-variant22-variant24-variant25-variant31-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,15:43:99:308,0,714:10,18,5,10
chr2	64139834	.	A	T	187.29	PASS	AC=1;AF=0.579;AN=2;DP=518;MQ=60;set=variant-filterInvariant2-variant5-variant6-variant8-variant9-variant11-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant31-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:214,0,274:4,6,2,6
chr2	64139901	.	A	T	377.99	PASS	AC=2;AF=0.857;AN=2;DP=369;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:226,18,0:0,0,1,5
chr2	64140301	.	A	T	2372.06	PASS	AC=2;AF=0.841;AN=2;DP=2328;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1419,131,0:0,0,26,18
chr2	64146946	.	A	C	134.9	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;set=variant26-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:203,0,271:7,3,6,3
chr2	64147834	.	G	A	94.73	PASS	AC=1;AF=0.611;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant9-variant11-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant31-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:72:113,0,72:0,2,0,3
chr2	64189566	.	A	G	1013.33	PASS	AC=1;AF=0.5;AN=2;DP=182;FractionInformativeReads=1;MQ=60;set=variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:746,0,567:6,14,10,17
chr2	64195997	.	CAA	CAAA,CA,C	410.82	PASS	AC=1,0,0;AF=0.406,0.078,0.016;AN=2;DP=1138;MQ=60;set=variant-filterInvariant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant26-variant29-variant30-variant31-variant32-filterInvariant34-variant36-variant37-variant38-filterInvariant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:49:99:6,5,25,13
chr2	64210979	.	CA	C	182.15	PASS	AC=1;AF=0.5;AN=2;DP=175;MQ=60;set=variant-variant13-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:61,11:72:94:94,0,1499:41,20,7,4
chr2	64321791	.	C	T	1073.66	PASS	AC=1;AF=0.5;AN=2;DP=106;FS=6.152;FractionInformativeReads=1;MQ=60;MQRankSum=-1.679;QD=10.13;ReadPosRankSum=-0.839;SOR=0.335;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,47:106:99:1102,0,1756:37,22,24,23
chr2	64331815	.	CTT	CT,CTTTT,C	209.92	PASS	AC=1,0,0;AF=0.464,0.012,0.024;AN=2;DP=1612;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:39:99:15,12,9,3
chr2	64371109	.	T	TG	149.72	PASS	AC=2;AF=1;AN=2;DP=568;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:737,60,0:0,0,16,4
chr2	64371569	.	A	G	935.43	PASS	AC=1;AF=0.63;AN=2;DP=1950;MQ=60;set=variant-variant2-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant31-variant32-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,31:81:99:723,0,1139:26,24,14,17
chr2	64371615	.	C	G	1790.87	PASS	AC=1;AF=0.805;AN=2;DP=2563;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,20:63:99:366,0,1081:18,25,10,10
chr2	64682364	.	A	C	829.52	PASS	AC=1;AF=0.676;AN=2;DP=783;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,7:25:99:198,0,615:15,3,6,1
chr2	64687777	.	G	T	2568.11	PASS	AC=1;AF=0.75;AN=2;DP=6500;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:118,71:189:99:1551,0,2906:55,63,33,38
chr2	64794945	.	G	A	165.1	PASS	AC=1;AF=0.635;AN=2;DP=253;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant27-variant28-variant32-variant33-variant34-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:193,0,192:2,4,2,4
chr2	64796479	.	C	T	324.79	PASS	AC=1;AF=0.588;AN=2;DP=663;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,16:25:99:557,0,327:0,9,2,14
chr2	64796847	.	A	G	1793.56	PASS	AC=1;AF=0.591;AN=2;DP=3686;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,54:110:99:1482,0,1610:23,33,17,37
chr2	64796932	.	G	A	456.78	PASS	AC=1;AF=0.591;AN=2;DP=854;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:237,0,555:2,15,0,8
chr2	64799937	.	TAA	T	84.03	PASS	AC=1;AF=0.603;AN=2;DP=394;set=variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:15:206,0,15:1,0,5,1
chr2	64800239	.	G	A	345.41	PASS	AC=1;AF=0.5;AN=2;DP=216;FractionInformativeReads=1;MQ=60;set=variant11-variant23-variant29-variant30-variant31-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:434,0,457:8,12,4,13
chr2	64819249	.	TA	T,TAAAA,TAAA,TAA	95.51	PASS	AC=0,0,1,0;AF=0.071,0.286,0.2,0.014;AN=2;DP=1938;set=filterInvariant2-variant3-filterInvariant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/3:23:99:9,4,5,5
chr2	64859377	.	CTTT	CT,CTT,C	2176.63	PASS	AC=1,1,0;AF=0.227,0.489,0.011;AN=2;DP=8271;set=Intersection	GT:DP:GQ:SB	1/2:155:99:2,2,63,88
chr2	64859440	.	T	C	1146.75	PASS	AC=1;AF=0.5;AN=2;DP=175;MQ=60;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,53:102:99:1639,0,1443:12,37,15,38
chr2	64859679	.	T	C	2968.94	PASS	AC=2;AF=0.833;AN=2;DP=4231;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3245,343,0:0,0,62,53
chr2	64860029	.	CTTCAAA	C	6081	PASS	AC=1;AF=0.794;AN=2;DP=3751;set=variant2-variant3-variant8-variant10-variant14-variant19-variant20-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:125,98:223:99:3719,0,7454:63,62,50,48
chr2	64861511	.	TG	T	711.46	PASS	AC=2;AF=0.85;AN=2;DP=696;MQ=60;set=variant2-variant3-variant8-variant10-variant13-variant14-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant34-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:68:666,68,0:0,0,23,0
chr2	64862100	.	A	G	705.19	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.135;QD=16.4;ReadPosRankSum=-2.36;SOR=0.716;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,24:43:99:733,0,501:11,8,14,10
chr2	64881017	.	C	G	1186.77	PASS	AC=2;AF=1;AN=2;DP=1199;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1194,81,0:0,0,11,16
chr2	64881018	.	G	C	1186.77	PASS	AC=2;AF=1;AN=2;DP=1179;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:81:1194,81,0:0,0,11,15
chr2	65159329	.	T	C	310.41	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:335,0,431:10,3,9,2
chr2	65159596	.	G	A	436.39	PASS	AC=2;AF=0.556;AN=2;DP=1188;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant21-variant22-variant24-variant27-variant34-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1798,179,0:0,0,21,39
chr2	65200618	.	C	A	641.82	PASS	AC=2;AF=0.645;AN=2;DP=1829;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant30-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1620,165,0:0,0,32,23
chr2	65249702	.	T	TGGAGAAAGGACTG	874.12	PASS	AC=1;AF=0.565;AN=2;DP=966;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant11-variant13-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant34-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:861,0,4696:10,11,9,12
chr2	65249705	.	C	CTGTG	790.18	PASS	AC=1;AF=0.565;AN=2;DP=966;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant11-variant13-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant34-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:861,0,4696:10,11,9,12
chr2	65249706	.	C	G	799.22	PASS	AC=1;AF=0.565;AN=2;DP=966;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant11-variant13-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant34-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:825,0,4696:10,10,9,12
chr2	65249707	.	A	AG	789.95	PASS	AC=1;AF=0.565;AN=2;DP=964;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant11-variant13-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant34-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:825,0,4696:10,10,8,12
chr2	65250405	.	C	CAT	2665.29	PASS	AC=1;AF=0.5;AN=2;DP=344;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:77,84:161:99:2703,0,2468:33,44,32,52
chr2	65250472	.	A	ATG	893.71	PASS	AC=1;AF=0.5;AN=2;DP=800;MQ=60;set=variant6-variant11-variant17-variant21-variant25-variant28-variant30-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:980,0,896:4,24,5,25
chr2	65283702	.	G	GC	778.93	PASS	AC=2;AF=1;AN=2;DP=1532;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1282,108,0:0,0,9,27
chr2	65283745	.	C	CG	261.39	PASS	AC=2;AF=1;AN=2;DP=791;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:746,60,0:0,0,4,16
chr2	65301418	.	A	G	1402.21	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=0.647;FractionInformativeReads=1;MQ=60;MQRankSum=-0.822;QD=10.39;ReadPosRankSum=0.706;SOR=0.584;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:78,57:135:99:1430,0,1886:42,36,29,28
chr2	65309988	.	T	C	32.42	PASS	AC=2;AF=0.782;AN=2;DP=474;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:451,39,0:0,0,3,10
chr2	65310831	.	A	T	491.56	PASS	AC=2;AF=0.768;AN=2;DP=1488;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1679,138,0:0,0,37,9
chr2	65311555	.	C	T	2002.72	PASS	AC=2;AF=0.78;AN=2;DP=4633;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3415,308,0:0,0,53,50
chr2	65311656	.	TA	TAA,TAAA,T	1713.95	PASS	AC=1,1,0;AF=0.511,0.216,0.011;AN=2;DP=8450;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	1/2:146:91:5,5,79,57
chr2	65311891	.	A	G	2887.07	PASS	AC=1;AF=0.5;AN=2;DP=220;FS=1.038;FractionInformativeReads=1;MQ=60;MQRankSum=-1.616;QD=13.12;ReadPosRankSum=2.759;SOR=0.731;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:106,114:220:99:2915,0,2899:52,54,59,55
chr2	65312217	.	C	T	4777.8	PASS	AC=2;AF=0.81;AN=2;DP=14498;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,330:331:99:9958,980,0:0,1,162,168
chr2	65313215	.	C	CAG	664.41	PASS	AC=2;AF=0.81;AN=2;DP=2261;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2325,156,0:0,0,26,25
chr2	65315880	.	G	C	434.73	PASS	AC=2;AF=0.768;AN=2;DP=1237;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1225,99,0:0,0,8,25
chr2	65315903	.	G	A	355.62	PASS	AC=2;AF=0.763;AN=2;DP=782;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:726,60,0:0,0,4,16
chr2	65469810	.	T	TC	1609.63	PASS	AC=1;AF=0.5;AN=2;DP=159;FS=1.272;FractionInformativeReads=0.95;MQ=60;MQRankSum=1.976;QD=10.12;ReadPosRankSum=-0.2;SOR=0.586;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:81,70:151:99:1647,0,1999:44,37,36,34
chr2	65473930	.	AAAATTTTC	A	1249.53	PASS	AC=1;AF=0.75;AN=2;DP=2152;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:1168,0,3008:11,20,11,20
chr2	65478371	.	T	A	103.61	PASS	AC=2;AF=0.765;AN=2;DP=532;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:550,48,0:0,0,3,13
chr2	65480917	.	A	G	856.77	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=1.008;FractionInformativeReads=1;MQ=60;MQRankSum=2.439;QD=14.05;ReadPosRankSum=0.224;SOR=0.984;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:885,0,713:16,12,21,12
chr2	65481008	.	A	C	2703.76	PASS	AC=2;AF=0.864;AN=2;DP=4043;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2563,260,0:0,0,38,49
chr2	65488538	.	G	A	3694.14	PASS	AC=2;AF=0.864;AN=2;DP=3835;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2410,231,0:0,0,27,50
chr2	65495570	.	A	C	2671.74	PASS	AC=2;AF=0.864;AN=2;DP=2012;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1710,114,0:0,0,30,7
chr2	65495571	.	T	C	2709.15	PASS	AC=2;AF=0.864;AN=2;DP=2039;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1710,114,0:0,0,31,7
chr2	65495573	.	A	AC	2700.03	PASS	AC=2;AF=0.864;AN=2;DP=2086;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1710,114,0:0,0,31,7
chr2	65495887	.	G	A	5184.3	PASS	AC=2;AF=0.898;AN=2;DP=8146;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:5034,480,0:0,0,75,85
chr2	65496018	.	C	G	1049.1	PASS	AC=1;AF=0.545;AN=2;DP=1654;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant18-variant26-variant27-variant33-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,36:63:99:1079,0,909:8,19,16,20
chr2	65496144	.	A	G	8818.26	PASS	AC=2;AF=0.864;AN=2;DP=10210;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:4957,486,0:0,0,90,72
chr2	65496187	.	G	A	2870.33	PASS	AC=1;AF=0.545;AN=2;DP=5283;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant18-variant26-variant27-variant33-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,95:185:99:2470,0,1959:44,46,49,46
chr2	65496251	.	G	T	1912.08	PASS	AC=1;AF=0.545;AN=2;DP=3191;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant18-variant26-variant27-variant33-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,73:124:99:1700,0,1766:23,28,33,40
chr2	65496259	.	A	C	848.51	PASS	AC=1;AF=0.5;AN=2;DP=111;FS=1.58;FractionInformativeReads=1;MQ=59.97;MQRankSum=-0.217;QD=7.64;ReadPosRankSum=1.708;SOR=0.546;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,41:111:99:877,0,2742:28,42,18,23
chr2	65496834	.	T	C	248.22	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.666;QD=27.58;ReadPosRankSum=0.067;SOR=2.093;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:54:276,0,54:2,0,7,0
chr2	65497173	.	A	C	290.92	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.898;QD=29.09;ReadPosRankSum=0;SOR=0.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,8:10:57:319,0,57:0,2,2,6
chr2	65497333	.	CTT	C	848.31	PASS	AC=1;AF=0.545;AN=2;DP=1224;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant18-variant26-variant27-variant33-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,6:25:99:172,0,701:13,6,2,4
chr2	65497352	.	A	G	1190.71	PASS	AC=2;AF=1;AN=2;DP=2417;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:828,81,0:0,0,16,11
chr2	65498340	.	A	G	562.62	PASS	AC=1;AF=0.545;AN=2;DP=1252;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant18-variant26-variant27-variant33-variant34-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,13:39:99:332,0,675:15,11,6,7
chr2	65539641	.	C	T	2207.77	PASS	AC=1;AF=0.62;AN=2;DP=3366;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant19-variant20-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,60:108:99:1411,0,1264:22,26,28,32
chr2	65540905	.	C	G	3396.1	PASS	AC=1;AF=0.618;AN=2;DP=5136;MQ=60;set=variant2-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant26-variant27-variant34-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:139,155:294:99:3703,0,3385:64,75,75,80
chr2	65559027	.	A	G	3115.51	PASS	AC=2;AF=0.662;AN=2;DP=4490;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3291,327,0:0,0,60,49
chr2	65561392	.	C	T	1567.01	PASS	AC=1;AF=0.524;AN=2;DP=2481;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant21-variant23-variant25-variant26-variant29-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,64:113:99:1525,0,1048:27,22,37,27
chr2	65571277	.	A	AC	582.45	PASS	AC=1;AF=0.524;AN=2;DP=687;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant21-variant23-variant25-variant26-variant29-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,17:33:99:708,0,627:13,3,16,1
chr2	65571280	.	A	AC	663.42	PASS	AC=1;AF=0.524;AN=2;DP=783;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant21-variant23-variant25-variant26-variant29-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:696,0,785:16,3,17,1
chr2	65571284	.	A	C	715.3	PASS	AC=1;AF=0.524;AN=2;DP=886;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant18-variant21-variant23-variant25-variant26-variant29-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:690,0,839:19,3,17,1
chr2	65593439	.	A	AAAC,AAACAACAACAAC,AAACAACAAC	257.51	PASS	AC=0,2,0;AF=0.155,0.397,0.086;AN=2;DP=346;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant28-variant29-variant31-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	2/2:9:36:0,0,9,0
chr2	65604388	.	G	T	40.7	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.198;QD=5.81;ReadPosRankSum=-0.922;SOR=2.2;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,204:5,0,0,2
chr2	65604519	.	G	C	848.28	PASS	AC=1;AF=0.5;AN=2;DP=65;FS=3.504;FractionInformativeReads=1;MQ=60;MQRankSum=0.138;QD=13.05;ReadPosRankSum=1.175;SOR=1.158;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,34:65:99:877,0,785:19,12,24,10
chr2	65604914	.	A	G	993.11	PASS	AC=2;AF=0.762;AN=2;DP=2017;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1588,135,0:0,0,13,32
chr2	65659278	.	A	G	667.27	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=1.172;FractionInformativeReads=0.977;MQ=60;MQRankSum=0.025;QD=15.52;ReadPosRankSum=1.592;SOR=0.507;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:696,0,532:8,11,11,12
chr2	66585540	.	A	G	161.9	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.378;QD=13.49;ReadPosRankSum=0.869;SOR=0.169;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:190,0,221:0,6,1,5
chr2	66662875	.	CTTTTT	CTT,CT,CTTT,C,CTTTT	277.19	PASS	AC=0,0,1,0,0;AF=0.162,0.059,0.294,0.029,0.059;AN=2;DP=1061;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant16-variant17-filterInvariant18-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/3:9:65:1,3,3,2
chr2	66664751	.	C	T	449.36	PASS	AC=1;AF=0.5;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant6-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,30:62:99:896,0,829:22,10,19,11
chr2	66665146	.	T	C	1315.03	PASS	AC=1;AF=0.695;AN=2;DP=5530;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,84:145:99:1998,0,1450:29,32,33,51
chr2	66667186	.	C	T	191.7	PASS	AC=1;AF=0.713;AN=2;DP=805;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:125,0,349:3,8,3,4
chr2	66794834	.	G	A	1022.92	PASS	AC=2;AF=0.625;AN=2;DP=3203;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant17-variant19-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3520,324,0:0,0,64,44
chr2	66794923	.	A	AT	3959.97	PASS	AC=2;AF=0.977;AN=2;DP=7234;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,151:151:99:4327,452,0:0,0,91,60
chr2	66798282	.	G	T	512.37	PASS	AC=2;AF=0.977;AN=2;DP=901;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:799,72,0:0,0,19,5
chr2	66800974	.	C	A	2035.19	PASS	AC=2;AF=0.977;AN=2;DP=2318;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1573,156,0:0,0,18,34
chr2	67630980	.	G	A	3779.42	PASS	AC=2;AF=0.825;AN=2;DP=5077;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3727,347,0:0,0,50,66
chr2	67631831	.	G	A	1559.38	PASS	AC=1;AF=0.667;AN=2;DP=3052;FractionInformativeReads=1;set=variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,43:86:99:1260,0,1186:23,20,24,19
chr2	67632125	.	C	T	3945.89	PASS	AC=2;AF=0.825;AN=2;DP=4353;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2523,242,0:0,0,46,35
chr2	67637196	.	G	A	4944.27	PASS	AC=2;AF=0.977;AN=2;DP=8169;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,182:182:99:5616,545,0:0,0,91,91
chr2	68268706	.	A	C	3306.21	PASS	AC=1;AF=0.529;AN=2;DP=4190;MQ=60;set=variant-variant5-variant7-variant8-variant10-variant14-variant18-variant19-variant22-variant25-variant26-variant27-variant33-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:113,116:229:99:2857,0,2769:63,50,64,52
chr2	68270068	.	A	G	160.65	PASS	AC=1;AF=0.538;AN=2;DP=161;FractionInformativeReads=1;set=variant-variant5-variant7-variant8-variant10-variant14-variant22-variant26-variant27-variant33-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,2:9:60:60,0,251:6,1,2,0
chr2	68274080	.	CT	C	84.86	PASS	AC=1;AF=0.545;AN=2;DP=86;MQ=60;set=variant-variant8-variant19-variant22-variant25-variant26-variant33-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:17:78,0,17:1,0,3,0
chr2	68274609	.	A	T	272.64	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.705;QD=17.04;ReadPosRankSum=-1.573;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:301,0,175:1,5,2,8
chr2	68352515	.	A	C	2559.46	PASS	AC=2;AF=0.647;AN=2;DP=8090;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,225:225:99:7295,672,0:0,0,95,130
chr2	68357239	.	G	GATAT,GATATAT	573.31	PASS	AC=0,1;AF=0.286,0.5;AN=2;DP=184;set=variant8-variant12-variant16-variant35-variant40-variant41-variant42	GT:DP:GQ:SB	0/2:25:99:3,15,1,6
chr2	68357241	.	G	T	583.21	PASS	AC=1;AF=0.8;AN=2;DP=188;set=variant8-variant12-variant13-variant16-variant25-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,4:22:99:221,0,736:3,15,1,3
chr2	68357243	.	G	T	331.77	PASS	AC=1;AF=0.75;AN=2;DP=155;FractionInformativeReads=1;set=variant8-variant12-variant13-variant16-variant25-variant35-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,3:21:99:110,0,778:3,15,1,2
chr2	68357245	.	G	T	286.77	PASS	AC=1;AF=0.833;AN=2;DP=185;FractionInformativeReads=1;set=variant8-variant12-variant13-variant16-variant22-variant25-variant33-variant35-variant40-filterInvariant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,2:21:69:69,0,781:4,15,0,2
chr2	68357247	.	G	T	241.77	PASS	AC=2;AF=0.857;AN=2;DP=201;FS=0;set=variant8-variant12-variant13-variant15-variant16-variant22-variant25-variant33-variant35-variant37-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:44:465,44,0:0,0,2,13
chr2	68358341	.	T	C	787.66	PASS	AC=1;AF=0.661;AN=2;DP=2297;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,38:71:99:986,0,727:20,13,24,14
chr2	68358653	.	T	C	211.57	PASS	AC=1;AF=0.661;AN=2;DP=961;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:428,0,349:2,9,4,11
chr2	68361464	.	G	A	1376.81	PASS	AC=1;AF=0.5;AN=2;DP=528;MQ=60;set=variant3-variant11-variant18-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,38:87:99:1167,0,1393:23,26,15,23
chr2	68384656	.	T	A	2667.28	PASS	AC=1;AF=0.5;AN=2;DP=207;FS=1.07;FractionInformativeReads=1;MQ=60;MQRankSum=-2.031;QD=12.89;ReadPosRankSum=0.949;SOR=0.783;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,108:207:99:2696,0,2491:51,48,58,50
chr2	68384941	.	T	C	4082.94	PASS	AC=1;AF=0.5;AN=2;DP=369;FS=3.97;FractionInformativeReads=0.997;MQ=60;MQRankSum=0.532;QD=11.06;ReadPosRankSum=-1.051;SOR=0.522;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:197,171:368:99:4111,0,5026:84,113,81,90
chr2	68385097	.	A	G	1729.64	PASS	AC=2;AF=0.769;AN=2;DP=7780;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5333,506,0:0,0,89,80
chr2	68388823	.	A	G	1604.94	PASS	AC=1;AF=0.607;AN=2;DP=3932;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant33-variant35-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,65:132:99:1534,0,1577:34,33,31,34
chr2	68389276	.	G	GA	282.62	PASS	AC=2;AF=0.718;AN=2;DP=1790;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,50:51:99:1370,142,0:1,0,33,17
chr2	68402012	.	G	T	920.58	PASS	AC=2;AF=0.789;AN=2;DP=879;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:796,63,0:0,0,12,9
chr2	68402153	.	TA	T	3242.12	PASS	AC=2;AF=0.782;AN=2;DP=3327;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2095,169,0:0,0,26,30
chr2	68402786	.	TTTGCAGTTTC	T	8212.68	PASS	AC=2;AF=0.782;AN=2;DP=6708;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:6531,441,0:0,0,89,57
chr2	68402830	.	G	C	11419.3	PASS	AC=2;AF=0.782;AN=2;DP=8503;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,211:211:99:9579,653,0:0,0,122,89
chr2	68402835	.	A	G	11597.5	PASS	AC=2;AF=0.782;AN=2;DP=8833;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,220:220:99:9788,671,0:0,0,128,92
chr2	68406141	.	A	AAAAAG,AAAAAAG,AAAAG,AAAG,AAAAAAAG	1622.28	PASS	AC=1,0,1,0,0;AF=0.347,0.181,0.083,0.014,0.014;AN=2;DP=3494;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	3/1:61:99:6,1,22,32
chr2	68406487	.	CAA	C	2871.06	PASS	AC=1;AF=0.5;AN=2;DP=185;FS=4.322;FractionInformativeReads=1;MQ=60;MQRankSum=0.441;QD=15.52;ReadPosRankSum=0.664;SOR=1.032;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:108,77:185:99:2908,0,4692:55,53,45,32
chr2	68407926	.	A	G	7655.39	PASS	AC=1;AF=0.607;AN=2;DP=7956;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant33-variant35-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:148,127:275:99:2900,0,3339:74,74,66,61
chr2	68415563	.	CT	C	58.98	PASS	AC=1;AF=0.536;AN=2;DP=156;MQ=60;set=variant7-variant10-variant16-variant21-variant24-variant28-variant30-variant32-variant33-variant34-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:85:168,0,85:3,2,8,0
chr2	68415602	.	T	C	633.6	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=11.954;FractionInformativeReads=1;MQ=60;MQRankSum=-1.082;QD=22.63;ReadPosRankSum=0.148;SOR=3.258;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,19:28:99:662,0,197:5,4,17,2
chr2	68415767	.	G	A	3767.93	PASS	AC=1;AF=0.661;AN=2;DP=3992;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,62:140:99:1348,0,1900:30,48,33,29
chr2	68444143	.	TAC	T	1399.39	PASS	AC=1;AF=0.556;AN=2;DP=910;set=variant7-variant8-variant11-variant14-variant15-variant16-variant21-variant28-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:428,0,764:11,9,9,5
chr2	68444168	.	A	G	1409.44	PASS	AC=1;AF=0.559;AN=2;DP=1122;set=variant7-variant8-variant11-variant14-variant16-variant21-variant28-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,14:35:99:497,0,791:12,9,9,5
chr2	68444171	.	C	G,CGCAG,CACGCAG,CACACGCAG	3275.22	PASS	AC=1,0,1,0;AF=0.317,0.083,0.317,0.017;AN=2;DP=1969;set=variant7-variant8-variant11-variant14-variant15-variant3-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant34-variant6-variant37-variant38-variant39-variant40-variant12-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:35:99:0,0,21,14
chr2	68479212	.	G	A	2531.22	PASS	AC=1;AF=0.5;AN=2;DP=420;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,91:172:99:1947,0,1861:45,36,47,44
chr2	68479357	.	C	T	785.69	PASS	AC=1;AF=0.5;AN=2;DP=114;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,14:43:99:311,0,958:7,22,5,9
chr2	68479576	.	G	A	1375.2	PASS	AC=1;AF=0.661;AN=2;DP=2055;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,31:51:99:797,0,522:12,8,18,13
chr2	68479671	.	A	G	924.42	PASS	AC=2;AF=0.782;AN=2;DP=2285;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1662,153,0:0,0,25,26
chr2	68479717	.	G	GGGCGGAGGCGGGGGCGCGCGCGGGCCGGC	567.21	PASS	AC=2;AF=0.789;AN=2;DP=1444;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1607,112,0:0,0,15,22
chr2	68480157	.	C	T	938.09	PASS	AC=1;AF=0.5;AN=2;DP=183;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,40:92:99:907,0,1405:25,27,21,19
chr2	68483396	.	A	T	834.7	PASS	AC=1;AF=0.661;AN=2;DP=598;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant32-variant33-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:185,0,186:1,5,1,4
chr2	68511506	.	GA	G,GAA	1874.76	PASS	AC=1,1;AF=0.634,0.159;AN=2;DP=2431;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:70:99:1,0,34,35
chr2	68511584	.	A	G	1003.44	PASS	AC=1;AF=0.606;AN=2;DP=1899;MQ=60;set=variant-variant2-variant4-variant6-variant9-variant11-variant12-variant13-filterInvariant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:686,0,894:17,20,13,17
chr2	68543109	.	T	C	2604.11	PASS	AC=1;AF=0.5;AN=2;DP=221;FS=2.308;FractionInformativeReads=1;MQ=60;MQRankSum=-1.598;QD=11.78;ReadPosRankSum=0.803;SOR=0.861;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:109,112:221:99:2632,0,2642:61,48,67,45
chr2	68546304	.	T	C	283.38	PASS	AC=1;AF=0.667;AN=2;DP=407;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:198,0,110:2,2,3,2
chr2	68546588	.	C	A	171.49	PASS	AC=1;AF=0.5;AN=2;DP=68;FractionInformativeReads=1;MQ=60;set=variant14-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,15:43:99:325,0,849:17,11,10,5
chr2	68547214	.	G	A	300.2	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.761;QD=23.09;ReadPosRankSum=-0.423;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:98:328,0,98:0,3,1,9
chr2	68592315	.	A	C	2163.06	PASS	AC=1;AF=0.672;AN=2;DP=2360;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant9-variant10-variant11-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,43:97:99:1111,0,1231:27,27,25,18
chr2	68592584	.	T	C	1364	PASS	AC=2;AF=0.838;AN=2;DP=3247;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2260,213,0:0,0,28,43
chr2	68592724	.	C	T	219.04	PASS	AC=1;AF=0.5;AN=2;DP=112;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant14-variant22-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,3:14:93:93,0,314:4,7,0,3
chr2	68607727	.	C	A	99.04	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant14-variant22-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:99:233,0,585:9,6,6,1
chr2	68613710	.	G	A	5390.74	PASS	AC=1;AF=0.58;AN=2;DP=3369;MQ=60;set=variant3-variant4-variant7-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,66:132:99:1682,0,1822:38,28,35,31
chr2	68615395	.	C	T	1120.77	PASS	AC=1;AF=0.58;AN=2;DP=532;MQ=60;set=variant3-variant4-variant7-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:288,0,567:13,4,8,2
chr2	68615654	.	T	C	4257.05	PASS	AC=1;AF=0.58;AN=2;DP=2706;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,48:97:99:1136,0,1151:19,30,20,28
chr2	68620410	.	T	A	2751.47	PASS	AC=1;AF=0.58;AN=2;DP=1932;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,56:90:99:1340,0,922:13,21,24,32
chr2	68621338	.	G	T	2382.57	PASS	AC=2;AF=0.621;AN=2;DP=1843;MQ=60;set=variant3-variant4-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2097,210,0:0,0,30,40
chr2	68621427	.	G	A	1475.99	PASS	AC=1;AF=0.58;AN=2;DP=740;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:311,0,220:1,6,2,8
chr2	68621472	.	G	A	158.13	PASS	AC=1;AF=0.5;AN=2;DP=124;MQ=60;set=variant9-variant11-variant14-variant19-variant22-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:147,0,192:0,5,1,5
chr2	68622658	.	C	T	736.22	PASS	AC=2;AF=0.672;AN=2;DP=634;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:745,57,0:0,0,17,2
chr2	68622914	.	G	A	4800.14	PASS	AC=2;AF=0.838;AN=2;DP=7006;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:5154,479,0:0,0,70,90
chr2	68622952	.	G	C	4877.95	PASS	AC=2;AF=0.667;AN=2;DP=4553;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3948,372,0:0,0,54,70
chr2	68622990	.	T	C	2639.15	PASS	AC=1;AF=0.538;AN=2;DP=1390;MQ=60;set=variant9-variant11-variant12-variant14-variant16-variant18-variant19-variant22-variant24-variant32-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,67:102:99:1736,0,852:14,21,26,41
chr2	68623147	.	C	T	1606.34	PASS	AC=1;AF=0.538;AN=2;DP=594;MQ=60;set=variant9-variant11-variant12-variant14-variant16-variant18-variant19-variant22-variant24-variant32-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:420,0,672:6,15,8,10
chr2	68623270	.	C	T	1951.85	PASS	AC=1;AF=0.577;AN=2;DP=706;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant10-variant11-variant13-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,6:20:99:100,0,349:7,7,3,3
chr2	68623274	.	T	C	1951.77	PASS	AC=2;AF=0.667;AN=2;DP=910;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:799,54,0:0,0,10,8
chr2	68623279	.	TAA	TA,T	429.45	PASS	AC=0,2;AF=0.275,0.55;AN=2;DP=1189;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:17:57:0,0,10,7
chr2	68623302	.	A	G	1801.28	PASS	AC=2;AF=0.667;AN=2;DP=1003;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:63:876,63,0:0,0,12,8
chr2	68623652	.	T	C	978.6	PASS	AC=2;AF=0.838;AN=2;DP=1279;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:975,90,0:0,0,13,17
chr2	68623843	.	GA	G	799.17	PASS	AC=2;AF=0.667;AN=2;DP=928;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:773,81,0:0,0,18,9
chr2	68623915	.	T	C	1865.69	PASS	AC=2;AF=0.667;AN=2;DP=2062;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1656,156,0:0,0,33,19
chr2	68624260	.	G	A	8649.25	PASS	AC=2;AF=0.667;AN=2;DP=7555;MQ=60;set=variant3-variant4-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,194:195:99:5743,571,0:0,1,92,102
chr2	68753240	.	T	A	597.16	PASS	AC=1;AF=0.607;AN=2;DP=704;MQ=60;set=variant-variant6-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant32-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,36:63:99:942,0,566:14,13,23,13
chr2	68756151	.	A	G	2635.87	PASS	AC=1;AF=0.5;AN=2;DP=1492;set=variant9-variant13-variant14-variant15-variant16-variant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:67,89:156:99:2081,0,1536:35,32,49,40
chr2	68762501	.	G	A	1210.08	PASS	AC=1;AF=0.5;AN=2;DP=1150;MQ=60;set=variant9-variant13-variant14-variant15-variant16-variant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,40:94:99:770,0,1378:24,30,19,21
chr2	68765205	.	C	T	1487.2	PASS	AC=1;AF=0.5;AN=2;DP=786;MQ=60;set=variant9-variant13-variant14-variant15-variant16-variant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,30:68:99:731,0,1031:18,20,17,13
chr2	68794528	.	G	T	647.13	PASS	AC=1;AF=0.607;AN=2;DP=865;MQ=60;set=variant-variant6-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant32-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,33:70:99:812,0,926:14,23,12,21
chr2	68805917	.	C	T	3533.59	PASS	AC=1;AF=0.5;AN=2;DP=2491;MQ=60;set=variant9-variant13-variant14-variant15-variant16-variant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:159,124:283:99:3242,0,4420:84,75,68,56
chr2	68806585	.	G	A	11871.7	PASS	AC=1;AF=0.556;AN=2;DP=3636;MQ=60;set=variant9-variant13-variant14-variant15-variant16-variant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:211,184:395:99:4382,0,5316:96,115,91,93
chr2	68806672	.	A	AT	5157.25	PASS	AC=1;AF=0.607;AN=2;DP=3463;MQ=60;set=variant-variant6-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant32-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:141,110:251:99:3651,0,4914:54,87,36,74
chr2	68806690	.	TG	T	3348.58	PASS	AC=1;AF=0.607;AN=2;DP=2896;MQ=60;set=variant-variant6-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant32-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:123,84:207:99:2376,0,3753:44,79,26,58
chr2	68807224	.	C	T	627.07	PASS	AC=1;AF=0.5;AN=2;DP=639;FractionInformativeReads=1;MQ=60;set=variant9-variant13-variant14-variant15-variant16-variant19-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,40:77:99:978,0,1171:11,26,16,24
chr2	68881938	.	CAA	CAAA,C,CA,CAAAA	146.83	PASS	AC=1,0,0,0;AF=0.088,0.025,0.375,0.075;AN=2;DP=1760;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant30-filterInvariant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:41:99:18,10,9,4
chr2	68882468	.	T	C	7388.2	PASS	AC=1;AF=0.542;AN=2;DP=7247;MQ=60;set=variant2-variant3-variant5-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant30-variant31-variant32-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:154,127:281:99:3330,0,4042:65,89,62,65
chr2	68962137	.	G	A	161.9	PASS	AC=1;AF=0.556;AN=2;DP=364;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant13-variant17-variant20-variant21-variant26-variant32-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,241:5,1,3,1
chr2	69002281	.	C	G	1903.49	PASS	AC=1;AF=0.548;AN=2;DP=4180;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant24-variant26-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:116,106:222:99:2566,0,2900:67,49,59,47
chr2	69002760	.	C	T	1545.29	PASS	AC=1;AF=0.538;AN=2;DP=2552;MQ=60;set=variant3-variant5-variant7-variant9-variant10-variant12-variant15-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,52:110:99:1414,0,1626:32,26,35,17
chr2	69009304	.	C	T	286.64	PASS	AC=1;AF=0.581;AN=2;DP=605;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,14:22:99:384,0,151:4,4,10,4
chr2	69014850	.	T	C	587.54	PASS	AC=1;AF=0.5;AN=2;DP=87;FractionInformativeReads=1;MQ=60;set=variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,33:46:99:911,0,411:11,2,22,11
chr2	69043539	.	G	C	566.89	PASS	AC=1;AF=0.797;AN=2;DP=813;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:420,0,247:3,7,4,10
chr2	69053115	.	G	T	1487.12	PASS	AC=1;AF=0.5;AN=2;DP=699;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant11-variant14-variant23-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,56:101:99:1529,0,1241:28,17,36,20
chr2	69053497	.	G	A	461.66	PASS	AC=1;AF=0.5;AN=2;DP=203;FractionInformativeReads=1;MQ=60;set=variant24-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,27:60:99:713,0,965:17,16,15,12
chr2	69053557	.	T	C	679.13	PASS	AC=2;AF=0.719;AN=2;DP=1725;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2095,192,0:0,0,37,27
chr2	69053754	.	C	T	1754.84	PASS	AC=1;AF=0.5;AN=2;DP=320;FractionInformativeReads=1;MQ=60;set=variant24-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,38:74:99:1057,0,969:18,18,21,17
chr2	69093312	.	A	G	2140.22	PASS	AC=1;AF=0.5;AN=2;DP=1050;MQ=60;set=variant15-variant24-variant34-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,76:177:99:1984,0,2801:54,47,39,37
chr2	69172923	.	T	C	387.69	PASS	AC=1;AF=0.5;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant13-variant16-variant22-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,28:43:99:964,0,509:13,2,19,9
chr2	69180161	.	T	A	1054	PASS	AC=1;AF=0.821;AN=2;DP=1270;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:418,0,544:3,13,3,11
chr2	69201501	.	G	A	332.98	PASS	AC=2;AF=0.744;AN=2;DP=1199;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1647,123,0:0,0,36,5
chr2	69201857	.	T	C	1213.78	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=1.983;FractionInformativeReads=0.988;MQ=60;MQRankSum=-0.207;QD=14.11;ReadPosRankSum=2.553;SOR=0.43;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1242,0,1131:10,29,15,31
chr2	69201894	.	C	T	833.8	PASS	AC=2;AF=0.691;AN=2;DP=1926;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2096,180,0:0,0,15,45
chr2	69204578	.	G	A	138.87	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.551;QD=9.26;ReadPosRankSum=-1.531;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:167,0,325:9,1,5,0
chr2	69207732	.	A	G	570.24	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=3.899;FractionInformativeReads=0.975;MQ=60;MQRankSum=1.11;QD=14.26;ReadPosRankSum=-0.885;SOR=0.18;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:598,0,674:17,2,15,5
chr2	69267134	.	G	A	647.52	PASS	AC=1;AF=0.6;AN=2;DP=291;MQ=60;set=variant10-variant29-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,18:52:99:413,0,859:17,17,12,6
chr2	69272106	.	G	A	884.04	PASS	AC=1;AF=0.6;AN=2;DP=238;MQ=60;set=variant10-variant29-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:666,0,957:7,10,6,13
chr2	69272116	.	C	T	412.5	PASS	AC=1;AF=0.571;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant13-variant29-variant31-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:543,0,907:6,9,3,10
chr2	69297622	.	C	T	1848.69	PASS	AC=2;AF=0.886;AN=2;DP=2765;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2063,189,0:0,0,38,25
chr2	69298817	.	T	C	1158.56	PASS	AC=1;AF=0.638;AN=2;DP=2369;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant24-variant25-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,38:86:99:831,0,1096:25,23,20,18
chr2	69300274	.	C	T	747.67	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0.926;FractionInformativeReads=1;MQ=60;MQRankSum=-0.777;QD=10.68;ReadPosRankSum=0.424;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,33:70:99:776,0,944:14,23,14,19
chr2	69317925	.	G	A	6041.88	PASS	AC=2;AF=0.864;AN=2;DP=7209;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:4515,437,0:0,0,64,82
chr2	69318129	.	T	G	1002.88	PASS	AC=2;AF=0.909;AN=2;DP=905;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:546,48,0:0,0,4,12
chr2	69330118	.	A	G	1358.34	PASS	AC=2;AF=0.533;AN=2;DP=1392;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant10-variant12-variant13-variant14-variant16-variant25-variant29-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,71:72:99:2231,179,0:1,0,32,39
chr2	69330906	.	G	C	612.9	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.682;QD=13.32;ReadPosRankSum=0.825;SOR=0.588;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:641,0,763:6,18,6,16
chr2	69398263	.	G	A	959.91	PASS	AC=1;AF=0.677;AN=2;DP=1745;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:663,0,983:23,13,19,7
chr2	69398531	.	C	T	766.35	PASS	AC=1;AF=0.5;AN=2;DP=187;MQ=60;set=variant6-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,21:57:99:494,0,984:14,22,8,13
chr2	69409029	.	C	A	3545.06	PASS	AC=1;AF=0.7;AN=2;DP=4146;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,43:113:99:920,0,1741:29,41,19,24
chr2	69420574	.	GTC	G,GTCTC	38.96	PASS	AC=1,0;AF=0.25,0.25;AN=2;DP=268;MQ=60;set=filterInvariant10-variant11-variant38-variant41	GT:DP:GQ:SB	0/1:52:99:13,27,4,8
chr2	69420596	.	T	TAC,C	1263.27	PASS	AC=1,0;AF=0.2,0.5;AN=2;DP=198;set=variant38-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:37:99:2,18,7,10
chr2	69474859	.	A	G	3083.03	PASS	AC=2;AF=1;AN=2;DP=100;FS=0;FractionInformativeReads=1;MQ=60;QD=30.83;SOR=0.863;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3111,300,0:0,0,54,46
chr2	69475343	.	GT	G,GTT	15569	PASS	AC=1,0;AF=0.5,0.091;AN=2;DP=6837;MQ=60;set=variant3-variant4-variant10-variant21-variant24-variant26-variant30-variant31-variant33-variant38-variant41	GT:DP:GQ:SB	0/1:523:99:112,143,121,147
chr2	69476026	.	CCTTTT	C	5970.85	PASS	AC=1;AF=0.5;AN=2;DP=352;FS=2.303;FractionInformativeReads=0.983;MQ=60;MQRankSum=0.477;QD=16.96;ReadPosRankSum=2.102;SOR=0.566;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:186,160:346:99:6008,0,12341:82,104,76,84
chr2	69476275	.	T	A	1810.1	PASS	AC=1;AF=0.5;AN=2;DP=124;FS=4.347;FractionInformativeReads=1;MQ=58.63;MQRankSum=-2.016;QD=14.6;ReadPosRankSum=0.03;SOR=0.404;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,67:124:99:1838,0,1436:34,23,34,33
chr2	69552521	.	C	A	9954.42	PASS	AC=2;AF=0.696;AN=2;DP=9246;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant16-variant19-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,310:310:99:9475,928,0:0,0,184,126
chr2	69553375	.	GA	G	996.2	PASS	AC=2;AF=0.672;AN=2;DP=1567;set=variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant13-variant16-variant19-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,43:44:99:1089,105,0:0,1,20,23
chr2	69556415	.	C	T	784.14	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=4.594;FractionInformativeReads=1;MQ=60;MQRankSum=-1.85;QD=10.74;ReadPosRankSum=-1.618;SOR=0.337;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,35:73:99:812,0,1081:25,13,19,16
chr2	69556691	.	C	T	182.54	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.122;QD=10.74;ReadPosRankSum=-0.146;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:211,0,334:7,3,5,2
chr2	69565842	.	TA	T	305.67	PASS	AC=2;AF=0.761;AN=2;DP=188;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant11-variant16-variant19-variant21-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:148,18,0:0,0,0,6
chr2	69573029	.	T	C	2047.23	PASS	AC=2;AF=0.696;AN=2;DP=1896;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant16-variant19-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1524,141,0:0,0,28,19
chr2	69583873	.	AT	A	277.84	PASS	AC=2;AF=0.725;AN=2;DP=241;set=variant2-variant3-variant7-variant8-variant10-variant12-variant16-variant19-variant21-variant24-variant27-variant29-variant31-variant32-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:30:403,30,0:0,0,1,8
chr2	69586293	.	A	C	1418.34	PASS	AC=2;AF=0.696;AN=2;DP=1213;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant16-variant19-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1397,138,0:0,0,27,19
chr2	69614161	.	A	G	2851.93	PASS	AC=2;AF=0.696;AN=2;DP=3188;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant16-variant19-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3279,322,0:0,0,65,43
chr2	69622837	.	C	T	624.39	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=1.007;FractionInformativeReads=1;MQ=60;MQRankSum=-0.707;QD=9.46;ReadPosRankSum=-2.277;SOR=0.551;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,28:66:99:653,0,1062:27,11,19,9
chr2	69623136	.	A	G	6459.13	PASS	AC=2;AF=0.696;AN=2;DP=6739;MQ=60;set=variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant16-variant19-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,215:215:99:6117,641,0:0,0,107,108
chr2	69626342	.	CA	C	64.08	PASS	AC=1;AF=0.5;AN=2;DP=1146;set=filterInvariant-variant2-variant3-variant4-variant6-variant7-filterInvariant8-filterInvariant9-variant11-filterInvariant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-filterInvariant30-variant31-variant34-variant36-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:121,0,230:11,4,8,0
chr2	69633382	.	A	T	170.22	PASS	AC=2;AF=0.717;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant11-variant12-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:267,18,0:0,0,0,6
chr2	69642513	.	C	CT,CTT	235.99	PASS	AC=0,1;AF=0.5,0.05;AN=2;DP=361;set=variant3-variant4-variant10-variant29-variant30-variant31-variant33-variant38-variant41-variant42	GT:DP:GQ:SB	0/2:23:99:2,13,3,5
chr2	69642572	.	T	C	337.45	PASS	AC=2;AF=0.704;AN=2;DP=302;set=variant2-variant3-variant4-variant7-variant10-variant11-variant12-variant16-variant19-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:395,27,0:0,0,0,9
chr2	69646504	.	G	A	137.93	PASS	AC=1;AF=0.55;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant10-variant29-variant30-variant31-variant33-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:73:73,0,118:3,1,2,1
chr2	69646541	.	G	A	168.17	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.387;QD=15.29;ReadPosRankSum=-0.143;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:196,0,145:4,1,5,1
chr2	69657349	.	CTT	CT,C	281.15	PASS	AC=2,0;AF=0.655,0.017;AN=2;DP=425;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant16-variant19-variant21-variant23-variant24-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:8:24:0,0,1,7
chr2	69688631	.	CA	CAA,C	1682.52	PASS	AC=1,0;AF=0.128,0.372;AN=2;DP=15010;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant39-filterInvariant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:264:99:67,62,76,59
chr2	69688649	.	T	C	4709.18	PASS	AC=1;AF=0.55;AN=2;DP=3535;set=variant3-variant4-variant10-variant29-variant30-variant31-variant33-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:176,126:302:99:2459,0,3891:94,82,64,62
chr2	69688727	.	AT	A,ATT	630.49	PASS	AC=1,0;AF=0.489,0.011;AN=2;DP=11383;set=variant-variant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:199:99:56,93,19,31
chr2	69693747	.	T	C	293.71	PASS	AC=1;AF=0.542;AN=2;DP=230;MQ=60;set=variant3-variant4-variant10-variant18-variant29-variant30-variant31-variant33-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:537,0,312:1,10,1,14
chr2	69708367	.	T	C	264.87	PASS	AC=2;AF=0.583;AN=2;DP=289;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant10-variant18-variant29-variant30-variant31-variant33-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:723,60,0:0,0,10,10
chr2	69709079	.	A	T	532.46	PASS	AC=2;AF=0.583;AN=2;DP=416;MQ=60;set=variant3-variant4-variant10-variant18-variant29-variant30-variant31-variant33-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1244,108,0:0,0,13,23
chr2	69709919	.	A	G	902.35	PASS	AC=2;AF=0.583;AN=2;DP=767;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant10-variant18-variant29-variant30-variant31-variant33-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1245,120,0:0,0,14,26
chr2	69734839	.	ATT	AT,A,ATTT	84.23	PASS	AC=0,1,0;AF=0.333,0.333,0.083;AN=2;DP=43;FS=0;MQ=60;set=variant-variant19-variant30-variant38-variant40-variant41	GT:DP:GQ:SB	0/2:4:21:0,1,0,3
chr2	69741801	.	C	T	2121.21	PASS	AC=2;AF=0.542;AN=2;DP=1132;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant10-variant18-variant29-variant30-variant31-variant33-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3200,303,0:0,0,46,55
chr2	69741854	.	T	G	2356.42	PASS	AC=2;AF=1;AN=2;DP=4093;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.643;ReadPosRankSum=0.711;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3137,297,0:0,0,48,51
chr2	69746296	.	C	T	1121.22	PASS	AC=2;AF=0.55;AN=2;DP=783;MQ=60;set=variant3-variant4-variant18-variant21-variant29-variant30-variant31-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2546,243,0:0,0,39,42
chr2	69747490	.	C	CT	43.38	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;set=variant4-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:3:74,0,3:0,1,0,5
chr2	69747817	.	G	C	1028.19	PASS	AC=2;AF=0.618;AN=2;DP=1800;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1178,114,0:0,0,24,14
chr2	69758989	.	C	T	310.38	PASS	AC=2;AF=0.563;AN=2;DP=148;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant10-variant18-variant30-variant31-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:531,42,0:0,0,10,4
chr2	69759415	.	G	A	394.46	PASS	AC=2;AF=0.618;AN=2;DP=1070;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1464,123,0:0,0,8,33
chr2	69771484	.	C	T	1956.43	PASS	AC=1;AF=0.625;AN=2;DP=3896;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,58:142:99:1515,0,2397:60,24,41,17
chr2	69784278	.	T	C	425.29	PASS	AC=1;AF=0.632;AN=2;DP=535;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:561,0,552:0,15,0,15
chr2	69870217	.	ATTTT	ATTT,ATTTTT,A,ATT,AT,ATTTTTTT	37.44	PASS	AC=0,0,0,0,0,1;AF=0.192,0.077,0.038,0.115,0.038,0.038;AN=2;DP=295;set=filterInvariant11-variant12-variant14-variant17-filterInvariant20-variant26-filterInvariant29-variant31-filterInvariant33-variant39-variant40-filterInvariant41-filterInvariant44	GT:DP:GQ:SB	0/6:7:73:3,1,0,3
chr2	69870301	.	C	A	228.88	PASS	AC=1;AF=0.5;AN=2;DP=29;FractionInformativeReads=1;MQ=60;SOR=1.329;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:183,0,150:2,2,2,4
chr2	70046255	.	G	C	907.29	PASS	AC=1;AF=0.632;AN=2;DP=439;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant10-variant12-variant14-variant18-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:558,0,636:9,1,9,5
chr2	70046262	.	G	A	1028.26	PASS	AC=1;AF=0.639;AN=2;DP=453;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant12-variant14-variant18-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:591,0,694:10,2,10,5
chr2	70053619	.	A	T	237.46	PASS	AC=1;AF=0.647;AN=2;DP=297;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant12-variant14-variant18-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:250,0,222:2,6,1,6
chr2	70053668	.	A	G	46.72	PASS	AC=2;AF=0.696;AN=2;DP=141;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant10-variant13-variant14-variant15-variant16-variant22-variant24-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:94,9,0:0,0,1,2
chr2	70056866	.	A	G	1857.56	PASS	AC=1;AF=0.632;AN=2;DP=2758;MQ=60;set=variant3-variant6-variant8-variant10-variant12-variant14-variant18-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,69:131:99:1679,0,1420:36,26,39,30
chr2	70057448	.	T	G	742.65	PASS	AC=1;AF=0.629;AN=2;DP=1697;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,37:60:99:843,0,517:7,16,16,21
chr2	70068258	.	CT	C	426.7	PASS	AC=1;AF=0.633;AN=2;DP=824;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,16:22:99:444,0,124:1,5,7,9
chr2	70076954	.	A	T	506.19	PASS	AC=2;AF=0.645;AN=2;DP=808;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:775,78,0:0,0,9,17
chr2	70098808	.	A	G	889.52	PASS	AC=1;AF=0.633;AN=2;DP=1175;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:395,0,506:11,10,7,8
chr2	70106832	.	T	C	2256.79	PASS	AC=1;AF=0.629;AN=2;DP=4928;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,74:146:99:1745,0,1706:31,41,34,40
chr2	70107979	.	CAAA	CA,CAA,C,CAAAA	439.63	PASS	AC=0,0,1,0;AF=0.274,0.145,0.081,0.048;AN=2;DP=1210;set=variant-variant2-variant4-variant6-variant7-variant8-filterInvariant9-variant11-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant44	GT:DP:GQ:SB	0/3:28:99:9,4,14,1
chr2	70108256	.	T	A	888.56	PASS	AC=1;AF=0.629;AN=2;DP=1889;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,34:57:99:1037,0,554:14,9,17,17
chr2	70120608	.	A	G	169.68	PASS	AC=1;AF=0.618;AN=2;DP=152;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant10-variant14-variant18-variant22-variant24-variant25-variant27-variant28-variant31-variant32-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:99:235,0,145:2,0,4,2
chr2	70120632	.	G	A	208.66	PASS	AC=1;AF=0.632;AN=2;DP=217;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant10-variant12-variant14-variant18-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:362,0,210:4,0,8,2
chr2	70120909	.	GA	G	6463.23	PASS	AC=1;AF=0.605;AN=2;DP=6777;MQ=60;set=variant3-variant6-variant8-variant10-variant12-variant14-variant18-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,142:300:99:4118,0,4679:72,86,60,82
chr2	70121197	.	T	C	883.67	PASS	AC=1;AF=0.605;AN=2;DP=1130;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant8-variant10-variant12-variant14-variant18-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:839,0,1039:14,25,9,23
chr2	70123808	.	G	GT	150.66	PASS	AC=1;AF=0.643;AN=2;DP=250;set=variant3-variant6-variant8-variant10-variant12-variant18-variant22-variant24-variant25-filterInvariant31-variant32-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:80:80,0,81:0,4,0,4
chr2	70124269	.	G	GT	599.23	PASS	AC=1;AF=0.613;AN=2;DP=1463;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:423,0,473:14,7,14,6
chr2	70124316	.	T	A	1316.12	PASS	AC=1;AF=0.597;AN=2;DP=2698;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant22-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,34:73:99:853,0,951:21,18,20,14
chr2	70167279	.	AT	A	893.23	PASS	AC=1;AF=0.5;AN=2;DP=4870;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,32:73:99:429,0,637:24,17,21,11
chr2	70189331	.	GACACACACACACAC	GACACACACAC,GACACACACACAC,GACACAC,GACACACAC,G	299.81	PASS	AC=1,1,0,0,0;AF=0.593,0.267,0.035,0.058,0.012;AN=2;DP=726;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:17:99:0,0,6,11
chr2	70376967	.	TC	T,TCC	31.8	PASS	AC=1,0;AF=0.25,0.375;AN=2;DP=69;MQ=60;set=variant10-variant12-variant16-variant22-variant25-variant26-variant35-variant41	GT:DP:GQ:SB	0/1:12:84:4,4,3,1
chr2	70392379	.	G	A	430.09	PASS	AC=1;AF=0.5;AN=2;DP=161;FractionInformativeReads=1;MQ=60;set=variant22-variant25-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:371,0,299:3,8,2,10
chr2	70392820	.	G	C	206.54	PASS	AC=1;AF=0.5;AN=2;DP=112;FractionInformativeReads=1;MQ=60;set=variant22-variant25-variant27-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,10:27:99:253,0,435:6,11,2,8
chr2	70410097	.	G	A	54.21	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;QD=13.55;ReadPosRankSum=0.727;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:82,0,34:0,1,1,2
chr2	70418039	.	T	G	371.05	PASS	AC=1;AF=0.556;AN=2;DP=242;MQ=60;set=variant8-variant11-variant19-variant21-variant28-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:99:179,0,346:10,6,6,0
chr2	70418260	.	A	G	403.2	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.076;QD=11.52;ReadPosRankSum=0.48;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:431,0,608:6,13,5,11
chr2	70418339	.	T	C	78.48	PASS	AC=1;AF=0.621;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:92:92,0,224:1,6,0,4
chr2	70451527	.	T	A	2020.71	PASS	AC=1;AF=0.5;AN=2;DP=193;FS=5.093;FractionInformativeReads=1;MQ=60;MQRankSum=-0.565;QD=10.47;ReadPosRankSum=-1.136;SOR=1.035;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:108,85:193:99:2049,0,2732:58,50,52,33
chr2	70451604	.	GA	G	2398.02	PASS	AC=1;AF=0.5;AN=2;DP=236;FS=0;FractionInformativeReads=0.936;MQ=60;MQRankSum=2.349;QD=10.16;ReadPosRankSum=-0.21;SOR=0.684;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:121,100:221:99:2435,0,3068:59,62,49,51
chr2	70455907	.	A	G	153.72	PASS	AC=1;AF=0.64;AN=2;DP=280;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:95:246,0,95:3,0,5,3
chr2	70456338	.	C	T	1191.85	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.092;QD=14.02;ReadPosRankSum=-1.572;SOR=0.611;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,45:85:99:1220,0,919:16,24,19,26
chr2	70475933	.	T	G	305.87	PASS	AC=2;AF=0.782;AN=2;DP=599;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:575,42,0:0,0,2,12
chr2	70503954	.	G	T	813.63	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=0.926;FractionInformativeReads=0.986;MQ=60;MQRankSum=-1.347;QD=11.3;ReadPosRankSum=-1.394;SOR=0.529;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,28:71:99:842,0,1139:25,18,15,13
chr2	70504926	.	A	G	543.45	PASS	AC=1;AF=0.716;AN=2;DP=1109;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:239,0,394:7,8,6,3
chr2	70504972	.	G	C	622.14	PASS	AC=2;AF=0.786;AN=2;DP=1568;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1043,93,0:0,0,23,8
chr2	70506331	.	ACTT	A	5798.08	PASS	AC=1;AF=0.716;AN=2;DP=10810;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,132:290:99:5068,0,7420:88,70,72,60
chr2	70507497	.	C	CT	1037.56	PASS	AC=1;AF=0.5;AN=2;DP=132;FS=1.572;FractionInformativeReads=0.818;MQ=60;MQRankSum=-0.847;QD=7.86;ReadPosRankSum=-1.063;SOR=0.548;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,50:108:99:1075,0,1314:21,37,20,30
chr2	70508379	.	G	A	1142.04	PASS	AC=2;AF=0.786;AN=2;DP=2233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2192,156,0:0,0,2,50
chr2	70520982	.	C	A	713.93	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=5.973;FractionInformativeReads=1;MQ=60;MQRankSum=0.895;QD=12.75;ReadPosRankSum=3.048;SOR=1.651;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:742,0,766:12,18,6,20
chr2	70524427	.	T	C	148.32	PASS	AC=1;AF=0.5;AN=2;DP=1380;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant29-filterInvariant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,18:61:99:668,0,1748:28,15,12,6
chr2	70524433	.	T	G	181.26	PASS	AC=1;AF=0.5;AN=2;DP=1437;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant33-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,20:65:99:737,0,1952:29,16,13,7
chr2	70524437	.	A	G	184.27	PASS	AC=1;AF=0.5;AN=2;DP=1525;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant33-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,21:69:99:818,0,1988:33,15,14,7
chr2	70524444	.	C	G	178.25	PASS	AC=1;AF=0.5;AN=2;DP=1671;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-filterInvariant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant33-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,23:75:99:848,0,2153:35,17,15,8
chr2	70524451	.	C	T	154.21	PASS	AC=1;AF=0.5;AN=2;DP=1911;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant29-variant31-variant33-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:53,24:77:99:875,0,2311:37,16,15,9
chr2	70524452	.	A	G	115.23	PASS	AC=1;AF=0.5;AN=2;DP=1935;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-filterInvariant29-variant31-variant33-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:56,24:80:99:881,0,2227:39,17,15,9
chr2	70524477	.	G	C	370	PASS	AC=1;AF=0.5;AN=2;DP=1657;set=variant2-filterInvariant3-variant9-variant14-variant15-variant18-variant19-variant20-variant22-filterInvariant23-variant25-variant31-variant33-variant34-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:97,26:123:99:434,0,3833:60,37,17,9
chr2	70524478	.	G	A	370	PASS	AC=1;AF=0.5;AN=2;DP=2695;set=variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-variant16-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant25-variant26-filterInvariant29-variant31-variant33-variant34-variant35-variant38-variant39-filterInvariant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:80,42:122:99:1345,0,2277:49,31,27,15
chr2	70524508	.	A	ACAGC	405.64	PASS	AC=1;AF=0.5;AN=2;DP=3622;set=variant2-variant3-variant5-variant8-variant9-variant11-variant14-variant15-filterInvariant16-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant25-variant26-variant29-filterInvariant31-variant33-variant34-variant35-variant38-filterInvariant39-filterInvariant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:95,54:149:99:2067,0,3797:52,43,31,23
chr2	70524511	.	ACTGT	A	384.57	PASS	AC=1;AF=0.5;AN=2;DP=3857;FractionInformativeReads=1;set=variant2-variant3-variant5-variant8-filterInvariant9-variant11-variant14-variant15-variant16-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant25-variant26-filterInvariant29-filterInvariant31-variant33-variant34-variant35-variant38-filterInvariant39-filterInvariant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:103,54:157:99:1999,0,4119:57,46,30,24
chr2	70524576	.	C	G	561.01	PASS	AC=1;AF=0.5;AN=2;DP=1778;set=variant3-variant5-variant14-filterInvariant15-filterInvariant20-filterInvariant23-filterInvariant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:135,68:203:99:1262,0,3418:70,65,28,40
chr2	70524606	.	G	A	1061.92	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=443;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:134,61:195:99:1894,0,5354:58,76,24,37
chr2	70524612	.	G	GGAACTCACTGGTGACCAAAGCCTGGGATTAAGCCAGAGGAACATGGCAGAGTTTGACACACTGGTGCACCTGCTGCATGGAAGCCTGCC,GGAACTCACTGGTGACCAAAGCCTGGGATTAAGCCAGAGGAACATGGCAGAGTTTGACACACTGGTGCACCTGCTGCATGGAAGCCTGCCTGTCCTCACGACAGC	931.96	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=417;FractionInformativeReads=1;set=variant14-variant41	GT:DP:GQ:SB	0/2:184:99:56,76,17,35
chr2	70528092	.	G	A	1622.35	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=2.456;FractionInformativeReads=1;MQ=60;MQRankSum=-0.179;QD=14.88;ReadPosRankSum=1.685;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,58:109:99:1651,0,1313:24,27,24,34
chr2	70528601	.	T	C	1661.24	PASS	AC=1;AF=0.55;AN=2;DP=1466;MQ=60;set=variant8-variant11-variant15-variant19-variant26-variant28-variant31-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,50:116:99:1336,0,1675:34,32,27,23
chr2	70529037	.	T	G	773.75	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.967;QD=17.19;ReadPosRankSum=-1.558;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:802,0,652:7,14,7,17
chr2	70529242	.	T	C	350.88	PASS	AC=1;AF=0.611;AN=2;DP=980;MQ=60;set=variant-variant3-variant8-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,24:45:99:619,0,468:11,10,11,13
chr2	70529277	.	G	A	543.04	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=0.978;MQ=60;MQRankSum=-1.45;QD=12.07;ReadPosRankSum=2.675;SOR=0.801;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,24:44:99:571,0,416:8,12,9,15
chr2	70674749	.	G	C	2105.81	PASS	AC=2;AF=0.694;AN=2;DP=4370;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,126:127:99:3964,335,0:1,0,82,44
chr2	70675581	.	C	G	109.9	PASS	AC=2;AF=0.7;AN=2;DP=702;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:501,45,0:0,0,10,5
chr2	70676639	.	A	G	922.11	PASS	AC=2;AF=0.7;AN=2;DP=2341;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3008,282,0:0,0,55,39
chr2	70678173	.	C	A	1801.13	PASS	AC=2;AF=0.583;AN=2;DP=668;MQ=60;set=variant3-variant5-variant6-variant7-variant13-variant15-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1350,111,0:0,0,7,30
chr2	70678258	.	G	C	179.62	PASS	AC=2;AF=1;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;QD=29.94;SOR=2.303;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:208,18,0:0,0,1,5
chr2	70683307	.	C	T	462.99	PASS	AC=2;AF=1;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;QD=30.18;SOR=2.67;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:491,36,0:0,0,10,2
chr2	70683350	.	A	G	1028	PASS	AC=2;AF=1;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;QD=33.25;SOR=2.546;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1056,87,0:0,0,23,6
chr2	70683753	.	T	C	682.07	PASS	AC=2;AF=0.579;AN=2;DP=358;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant13-variant15-variant16-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant35-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:694,63,0:0,0,6,15
chr2	70742173	.	T	G	907.63	PASS	AC=1;AF=0.5;AN=2;DP=181;FractionInformativeReads=1;MQ=60;set=variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,41:89:99:920,0,1137:21,27,17,24
chr2	70888203	.	C	A	426	PASS	AC=1;AF=0.533;AN=2;DP=658;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant22-variant23-variant26-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:490,0,241:4,6,5,9
chr2	70900403	.	G	A	1793.18	PASS	AC=1;AF=0.536;AN=2;DP=1654;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1293,0,1485:22,33,17,32
chr2	70901785	.	A	G	1374.87	PASS	AC=1;AF=0.536;AN=2;DP=919;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,29:60:99:1166,0,1339:21,10,23,6
chr2	70901788	.	GGT	G	1393.61	PASS	AC=1;AF=0.536;AN=2;DP=972;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,30:65:99:1154,0,1447:24,11,24,6
chr2	70902120	.	T	A	247.44	PASS	AC=1;AF=0.536;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant9-variant10-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:261,0,219:2,5,4,3
chr2	70902502	.	C	T	818.08	PASS	AC=1;AF=0.5;AN=2;DP=670;MQ=60;set=variant3-variant5-variant9-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,33:57:99:882,0,655:13,11,15,18
chr2	70902672	.	C	A	1342.82	PASS	AC=1;AF=0.5;AN=2;DP=671;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:474,0,616:9,15,8,13
chr2	70902823	.	C	T	566.58	PASS	AC=1;AF=0.5;AN=2;DP=415;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant9-variant11-variant14-variant15-variant22-variant23-variant26-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:350,0,329:8,4,9,5
chr2	70903664	.	G	A	1679.54	PASS	AC=1;AF=0.5;AN=2;DP=1049;MQ=60;set=variant3-variant5-variant9-variant11-variant15-variant22-variant23-variant26-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,45:86:99:1055,0,1138:16,25,23,22
chr2	70905099	.	T	G	404.57	PASS	AC=2;AF=0.817;AN=2;DP=1569;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:968,78,0:0,0,4,22
chr2	70906115	.	C	A	1711.56	PASS	AC=1;AF=0.54;AN=2;DP=3380;MQ=60;set=variant2-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant17-variant19-variant21-variant22-variant25-variant27-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,90:159:99:2307,0,1588:33,36,43,47
chr2	70910991	.	C	CA	786.33	PASS	AC=1;AF=0.5;AN=2;DP=399;MQ=60;set=variant-variant10-variant16-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,44:79:99:1561,0,1161:17,18,17,27
chr2	70917711	.	C	A	367.27	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.655;QD=13.6;ReadPosRankSum=-1.189;SOR=0.616;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:396,0,458:12,2,11,2
chr2	70917812	.	C	T	2476.49	PASS	AC=2;AF=0.854;AN=2;DP=4391;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,117:118:99:2983,323,0:1,0,70,47
chr2	70933636	.	T	C	1535.46	PASS	AC=1;AF=0.568;AN=2;DP=2186;MQ=60;set=variant-variant2-variant8-variant9-variant10-variant12-variant13-variant16-variant17-variant19-variant21-variant22-variant26-variant27-variant30-variant32-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,77:134:99:1919,0,1285:18,39,28,49
chr2	70995129	.	G	A	1051.17	PASS	AC=2;AF=0.645;AN=2;DP=5451;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4781,460,0:0,0,70,84
chr2	70995217	.	A	T	636.71	PASS	AC=2;AF=0.645;AN=2;DP=4006;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2730,270,0:0,0,41,50
chr2	71004368	.	A	G	228.53	PASS	AC=2;AF=0.733;AN=2;DP=193;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:420,30,0:0,0,10,0
chr2	71004413	.	C	CA,CAA	140.23	PASS	AC=1,0;AF=0.5,0.04;AN=2;DP=394;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-filterInvariant21-variant23-variant24-variant25-variant26-variant27-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant41-variant43	GT:DP:GQ:SB	0/1:21:75:11,3,4,3
chr2	71004910	.	C	A	1036.9	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=1.866;FractionInformativeReads=1;MQ=60;MQRankSum=-0.116;QD=12.34;ReadPosRankSum=-1.065;SOR=0.948;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,41:84:99:1065,0,1134:16,27,13,28
chr2	71012604	.	G	A	869.59	PASS	AC=2;AF=0.695;AN=2;DP=3743;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2359,222,0:0,0,40,34
chr2	71012734	.	C	G	714.46	PASS	AC=2;AF=0.684;AN=2;DP=2673;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1862,168,0:0,0,19,37
chr2	71017469	.	G	A	878.99	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=1.086;FractionInformativeReads=0.983;MQ=60;MQRankSum=-1.255;QD=14.65;ReadPosRankSum=-0.129;SOR=0.954;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:907,0,763:18,9,23,9
chr2	71017516	.	A	G	985.3	PASS	AC=1;AF=0.556;AN=2;DP=1969;MQ=60;set=variant-variant8-variant10-variant16-variant17-variant18-variant19-variant20-variant23-variant26-variant27-variant29-variant33-variant34-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,64:125:99:1628,0,1348:37,24,39,25
chr2	71036189	.	CA	C	2181.24	PASS	AC=1;AF=0.521;AN=2;DP=3382;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant19-variant21-variant22-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,67:143:99:2280,0,2633:41,35,38,29
chr2	71043461	.	C	T	1330.89	PASS	AC=1;AF=0.56;AN=2;DP=2590;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant20-variant23-variant25-variant29-variant30-variant31-variant32-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1273,0,1663:23,32,23,26
chr2	71057892	.	A	G	1367.84	PASS	AC=2;AF=0.989;AN=2;DP=2317;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2135,198,0:0,0,38,28
chr2	71058184	.	C	T	867.39	PASS	AC=2;AF=0.595;AN=2;DP=1425;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant14-variant15-variant21-variant22-variant27-variant28-variant29-variant30-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1990,186,0:0,0,32,30
chr2	71060936	.	G	C	2810.22	PASS	AC=1;AF=0.591;AN=2;DP=4398;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant14-variant15-variant17-variant21-variant22-variant27-variant28-variant29-variant30-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:105,91:196:99:2231,0,2692:48,57,46,45
chr2	71062648	.	G	A	1192.05	PASS	AC=1;AF=0.558;AN=2;DP=2381;MQ=60;set=variant2-variant3-variant5-variant7-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant30-variant32-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,45:89:99:1259,0,1298:30,14,33,12
chr2	71062833	.	G	GC	4573.48	PASS	AC=2;AF=1;AN=2;DP=6997;FS=0;MQ=60;MQRankSum=1.234;ReadPosRankSum=0.693;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:5717,463,0:0,0,73,79
chr2	71127607	.	G	A	137.44	PASS	AC=1;AF=0.525;AN=2;DP=470;MQ=60;set=variant-variant4-variant6-variant8-variant10-variant17-variant23-variant24-variant25-variant26-variant28-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,9:25:99:179,0,412:10,6,6,3
chr2	71148045	.	C	T	782.27	PASS	AC=2;AF=0.803;AN=2;DP=936;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:904,69,0:0,0,20,3
chr2	71160421	.	G	C	885.97	PASS	AC=1;AF=0.55;AN=2;DP=1644;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant10-variant11-variant12-variant15-variant19-variant21-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,29:68:99:733,0,1056:16,23,11,18
chr2	71160510	.	C	T	543.04	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=2.909;FractionInformativeReads=1;MQ=60;MQRankSum=0.488;QD=14.29;ReadPosRankSum=-0.754;SOR=0.956;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:571,0,353:9,7,9,13
chr2	71162773	.	C	T	66.22	PASS	AC=1;AF=0.673;AN=2;DP=440;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant24-variant25-variant26-variant28-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:111,0,148:3,3,3,2
chr2	71162996	.	A	G	1623.48	PASS	AC=2;AF=0.743;AN=2;DP=1994;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1220,123,0:0,0,23,18
chr2	71163086	.	T	C	3781.72	PASS	AC=1;AF=0.667;AN=2;DP=3866;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant24-variant25-variant26-variant28-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,53:111:99:1185,0,1419:31,27,29,24
chr2	71163173	.	C	T	1426.32	PASS	AC=1;AF=0.536;AN=2;DP=2082;MQ=60;set=variant8-variant9-variant10-variant12-variant15-variant19-variant21-variant24-variant25-variant27-variant31-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:65,74:139:99:1737,0,1441:29,36,38,36
chr2	71163225	.	C	T	1532.18	PASS	AC=1;AF=0.667;AN=2;DP=1997;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant24-variant25-variant26-variant28-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,31:74:99:727,0,1080:19,24,15,16
chr2	71170698	.	GGA	G	3754.76	PASS	AC=1;AF=0.5;AN=2;DP=241;FS=0.481;FractionInformativeReads=0.959;MQ=60;MQRankSum=1.719;QD=15.58;ReadPosRankSum=0.001;SOR=0.75;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:124,107:231:99:3792,0,4538:62,62,52,55
chr2	71170892	.	G	A	672.39	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=3.57;FractionInformativeReads=1;MQ=60;MQRankSum=-0.493;QD=18.17;ReadPosRankSum=1.352;SOR=0.201;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,24:37:99:701,0,415:2,11,8,16
chr2	71175645	.	G	A	787.35	PASS	AC=1;AF=0.595;AN=2;DP=1843;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant21-variant24-variant27-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,35:78:99:778,0,1072:16,27,11,24
chr2	71185391	.	A	C	5086.3	PASS	AC=2;AF=0.707;AN=2;DP=4808;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,171:171:99:5290,511,0:0,0,86,85
chr2	71186382	.	G	A	2558.15	PASS	AC=2;AF=0.7;AN=2;DP=2986;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant31-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2988,278,0:0,0,33,60
chr2	71190384	.	C	T	7185.51	PASS	AC=2;AF=0.707;AN=2;DP=7285;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,222:222:99:6835,664,0:0,0,100,122
chr2	71190545	.	G	A	1376.75	PASS	AC=2;AF=0.707;AN=2;DP=1292;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1550,117,0:0,0,9,30
chr2	71191777	.	C	T	395.6	PASS	AC=2;AF=0.712;AN=2;DP=824;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant11-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant29-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:913,72,0:0,0,11,13
chr2	71205976	.	A	G	201.94	PASS	AC=2;AF=0.633;AN=2;DP=1349;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1182,117,0:0,0,15,24
chr2	71206058	.	A	C	439.59	PASS	AC=2;AF=0.677;AN=2;DP=610;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:530,45,0:0,0,5,10
chr2	71206267	.	G	A	887.22	PASS	AC=1;AF=0.5;AN=2;DP=384;FractionInformativeReads=1;MQ=60;set=variant13-variant29-variant33-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:741,0,748:18,10,20,11
chr2	71208844	.	A	G	867.81	PASS	AC=2;AF=0.688;AN=2;DP=1122;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1161,107,0:0,0,25,11
chr2	71211989	.	A	G	6303.65	PASS	AC=1;AF=0.69;AN=2;DP=7524;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:119,122:241:99:3292,0,3069:60,59,59,63
chr2	71212621	.	A	AC	116.47	PASS	AC=1;AF=0.559;AN=2;DP=352;MQ=60;set=variant-variant3-variant8-variant11-variant12-variant14-variant16-variant19-variant20-variant26-variant29-variant33-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,10:24:99:232,0,356:6,8,4,6
chr2	71214173	.	G	C	922.41	PASS	AC=1;AF=0.69;AN=2;DP=1498;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:768,0,817:15,16,13,18
chr2	71295644	.	T	C	1235.25	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.808;QD=12.48;ReadPosRankSum=-0.612;SOR=0.651;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,50:99:99:1263,0,1340:22,27,23,27
chr2	71297057	.	C	T	1576.3	PASS	AC=1;AF=0.5;AN=2;DP=1418;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant12-variant14-variant16-variant23-variant26-variant27-variant33-variant35-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,47:96:99:1108,0,1201:20,29,17,30
chr2	71305359	.	G	A	582.99	PASS	AC=1;AF=0.5;AN=2;DP=2267;MQ=60;set=variant-variant3-variant4-variant8-variant11-variant12-variant14-variant16-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant29-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,65:108:99:1631,0,991:24,19,37,28
chr2	71305456	.	C	T	2898.53	PASS	AC=2;AF=0.826;AN=2;DP=6168;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:4173,398,0:0,0,59,74
chr2	71305660	.	C	T	480.5	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=11.537;FractionInformativeReads=1;MQ=56.9;MQRankSum=-4.152;QD=8.9;ReadPosRankSum=1.951;SOR=1.852;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,15:54:99:509,0,2229:17,22,11,4
chr2	71305661	.	C	A	480.5	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=11.537;FractionInformativeReads=1;MQ=56.9;MQRankSum=-4.461;QD=8.9;ReadPosRankSum=0.869;SOR=1.852;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,15:54:99:509,0,2229:17,22,11,4
chr2	71351487	.	G	A	877.93	PASS	AC=1;AF=0.571;AN=2;DP=1980;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant16-variant19-variant21-variant23-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,43:67:99:1119,0,655:9,15,21,22
chr2	71357417	.	C	A	1651.76	PASS	AC=1;AF=0.769;AN=2;DP=7812;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,124:197:99:2888,0,1741:33,40,53,71
chr2	71357634	.	C	T	2291.78	PASS	AC=1;AF=0.769;AN=2;DP=6485;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,66:151:99:1775,0,2324:46,39,36,30
chr2	71360723	.	A	G	805.17	PASS	AC=1;AF=0.875;AN=2;DP=1592;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,27:44:99:980,0,1045:7,10,12,15
chr2	71360735	.	T	TTCC	778.96	PASS	AC=1;AF=0.875;AN=2;DP=1471;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,27:42:99:1026,0,987:6,9,11,16
chr2	71405776	.	C	T	405.21	PASS	AC=1;AF=0.594;AN=2;DP=802;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant7-variant9-variant18-variant20-variant22-variant24-variant28-variant29-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,26:55:99:699,0,774:19,10,14,12
chr2	71410890	.	C	T	2186.13	PASS	AC=1;AF=0.611;AN=2;DP=3547;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant18-variant20-variant22-variant24-variant27-variant28-variant29-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:87,103:190:99:2926,0,2320:59,28,69,34
chr2	71411329	.	C	G	1726.42	PASS	AC=1;AF=0.588;AN=2;DP=2584;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant18-variant20-variant22-variant24-variant28-variant29-variant34-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:91,66:157:99:1756,0,2541:42,49,28,38
chr2	71412951	.	G	GT	1356.33	PASS	AC=1;AF=0.605;AN=2;DP=2339;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant18-variant20-variant22-variant24-variant27-variant28-variant29-variant34-variant35-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:51,48:99:99:1180,0,1218:28,23,27,21
chr2	71413984	.	A	G	2643.39	PASS	AC=1;AF=0.611;AN=2;DP=2255;MQ=60;set=variant2-variant4-variant6-variant22-variant28-variant34-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:138,109:247:99:2657,0,3343:61,77,48,61
chr2	71414007	.	A	G	2345.04	PASS	AC=1;AF=0.611;AN=2;DP=1928;MQ=60;set=variant2-variant4-variant6-variant22-variant28-variant34-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:111,95:206:99:2489,0,2912:42,69,36,59
chr2	71414645	.	A	G	1723.44	PASS	AC=1;AF=0.625;AN=2;DP=1431;MQ=60;set=variant2-variant4-variant6-variant22-variant28-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,88:168:99:2347,0,1909:39,41,40,48
chr2	71415479	.	T	C	1921.46	PASS	AC=2;AF=0.898;AN=2;DP=3260;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2107,198,0:0,0,37,29
chr2	71417065	.	G	T	3060.16	PASS	AC=2;AF=0.898;AN=2;DP=4086;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2624,267,0:0,0,38,51
chr2	71417134	.	C	T	308.69	PASS	AC=1;AF=0.594;AN=2;DP=680;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant18-variant20-variant22-variant24-variant28-variant29-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,19:36:99:600,0,475:6,11,3,16
chr2	71503978	.	T	C	1219.84	PASS	AC=1;AF=0.583;AN=2;DP=994;MQ=60;set=variant2-variant4-variant6-variant11-variant12-variant20-variant22-variant28-variant34-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:691,0,971:16,23,9,18
chr2	71558782	.	G	GC	382.22	PASS	AC=2;AF=1;AN=2;DP=993;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:72:778,72,0:0,0,20,3
chr2	71558924	.	G	T	4055.11	PASS	AC=2;AF=0.92;AN=2;DP=8117;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,185:186:99:5391,544,0:0,1,102,83
chr2	71559107	.	T	G	924.56	PASS	AC=1;AF=0.71;AN=2;DP=1173;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant14-variant16-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,20:52:99:600,0,939:6,26,2,18
chr2	71607539	.	G	A	509.49	PASS	AC=1;AF=0.717;AN=2;DP=398;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant14-variant16-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:191,0,360:3,6,4,3
chr2	71615571	.	C	T	706.36	PASS	AC=2;AF=0.898;AN=2;DP=1366;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:83:1021,83,0:0,0,23,5
chr2	71620818	.	C	T	2340.56	PASS	AC=2;AF=0.898;AN=2;DP=4238;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:2987,306,0:0,0,46,56
chr2	71627539	.	C	T	1744.56	PASS	AC=1;AF=0.717;AN=2;DP=1334;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant14-variant16-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:480,0,603:15,10,13,10
chr2	71633275	.	T	C	4431.48	PASS	AC=2;AF=0.726;AN=2;DP=4043;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant14-variant16-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3682,362,0:0,0,71,50
chr2	71633389	.	C	T	2840.28	PASS	AC=2;AF=0.742;AN=2;DP=2472;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant14-variant16-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2734,263,0:0,0,34,54
chr2	71634588	.	G	A	5199.39	PASS	AC=2;AF=0.898;AN=2;DP=6338;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:4327,372,0:0,0,47,77
chr2	71635931	.	G	T	2041.91	PASS	AC=2;AF=0.898;AN=2;DP=3164;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2339,213,0:0,0,21,50
chr2	71636036	.	A	G	149.59	PASS	AC=2;AF=0.742;AN=2;DP=377;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant14-variant16-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:563,42,0:0,0,1,13
chr2	71645828	.	G	A	1883.94	PASS	AC=2;AF=0.726;AN=2;DP=1831;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant14-variant16-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1903,180,0:0,0,21,39
chr2	71645890	.	G	C	675.3	PASS	AC=2;AF=0.795;AN=2;DP=743;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:737,63,0:0,0,5,16
chr2	71645946	.	G	A	323.54	PASS	AC=2;AF=0.769;AN=2;DP=179;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant12-variant16-variant21-variant22-variant23-variant26-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:180,12,0:0,0,0,4
chr2	71708825	.	T	TATCCATCC,TATCC,TATCCATCCATCC,TATCCATCCATCCATCC,TCC	160.48	PASS	AC=0,1,1,0,0;AF=0.038,0.564,0.064,0.013,0.013;AN=2;DP=663;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/3:14:99:0,0,11,3
chr2	71744258	.	T	C	672.73	PASS	AC=1;AF=0.5;AN=2;DP=386;FractionInformativeReads=1;MQ=60;set=variant12-variant18-variant22-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,41:82:99:1218,0,1038:15,26,15,26
chr2	71747235	.	A	G	1168.21	PASS	AC=2;AF=0.92;AN=2;DP=4365;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2766,263,0:0,0,56,32
chr2	71747432	.	G	T	1152.6	PASS	AC=2;AF=0.854;AN=2;DP=2682;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,68:69:99:1962,195,0:1,0,25,43
chr2	71747851	.	T	C	62.03	PASS	AC=2;AF=0.92;AN=2;DP=1421;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1105,102,0:0,0,25,9
chr2	71747899	.	G	A	123.21	PASS	AC=1;AF=0.689;AN=2;DP=2255;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,38:67:99:1050,0,1084:21,8,24,14
chr2	71747923	.	C	T	835.88	PASS	AC=1;AF=0.5;AN=2;DP=515;FractionInformativeReads=1;MQ=60;set=variant10-variant12-variant18-variant22-variant28-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,41:90:99:1077,0,1730:29,20,25,16
chr2	71753211	.	G	A	575.89	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=1.26;FractionInformativeReads=1;MQ=60;MQRankSum=0.05;QD=11.75;ReadPosRankSum=0.431;SOR=0.957;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,23:49:99:604,0,740:19,7,18,5
chr2	71755380	.	A	G	2858.37	PASS	AC=2;AF=0.955;AN=2;DP=4289;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3016,297,0:0,0,60,39
chr2	71762232	.	C	T	881.19	PASS	AC=2;AF=0.779;AN=2;DP=4261;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2697,264,0:0,0,38,51
chr2	71762310	.	A	G	1502.96	PASS	AC=2;AF=0.826;AN=2;DP=2964;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1829,147,0:0,0,24,25
chr2	71766487	.	G	A	2930.21	PASS	AC=2;AF=0.793;AN=2;DP=4170;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3335,308,0:0,0,35,68
chr2	71776345	.	C	T	953.03	PASS	AC=1;AF=0.768;AN=2;DP=1720;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:921,0,745:9,6,11,12
chr2	71776346	.	A	G	953.03	PASS	AC=1;AF=0.943;AN=2;DP=1924;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:921,0,745:9,6,11,12
chr2	71780215	.	T	C	1265.23	PASS	AC=2;AF=0.802;AN=2;DP=6190;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4572,467,0:0,0,77,79
chr2	71780821	.	T	C	49.87	PASS	AC=2;AF=0.886;AN=2;DP=189;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:248,27,0:0,0,5,4
chr2	71795152	.	A	T	566.22	PASS	AC=1;AF=0.75;AN=2;DP=5941;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,83:176:99:1978,0,2423:48,45,46,37
chr2	71796865	.	C	G	152.99	PASS	AC=1;AF=0.756;AN=2;DP=712;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:266,0,278:6,1,7,0
chr2	71797176	.	A	C	859.23	PASS	AC=1;AF=0.629;AN=2;DP=1927;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant16-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:691,0,700:14,17,11,14
chr2	71817003	.	A	G	241.46	PASS	AC=2;AF=0.789;AN=2;DP=794;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:919,66,0:0,0,5,17
chr2	71817571	.	A	T	701.66	PASS	AC=1;AF=0.571;AN=2;DP=967;MQ=60;set=variant6-variant7-variant9-variant11-variant14-variant15-variant18-variant20-variant21-variant26-variant27-variant29-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,33:52:99:948,0,486:5,14,7,26
chr2	71828423	.	A	T	952.2	PASS	AC=2;AF=0.977;AN=2;DP=1125;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:1172,95,0:0,0,25,7
chr2	71829821	.	G	T	3490.52	PASS	AC=2;AF=0.977;AN=2;DP=5773;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:4005,372,0:0,0,75,49
chr2	71847943	.	C	A	1206.75	PASS	AC=1;AF=0.802;AN=2;DP=1508;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:271,0,357:3,7,0,8
chr2	71871039	.	A	G	2265.88	PASS	AC=2;AF=0.895;AN=2;DP=3009;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1587,153,0:0,0,33,18
chr2	71871236	.	A	G	842.3	PASS	AC=2;AF=0.895;AN=2;DP=1372;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:981,96,0:0,0,11,21
chr2	71891361	.	C	T	2311.26	PASS	AC=2;AF=0.895;AN=2;DP=3742;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2521,246,0:0,0,53,29
chr2	71901286	.	C	T	755.18	PASS	AC=2;AF=0.86;AN=2;DP=1137;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:684,60,0:0,0,14,6
chr2	71906171	.	T	C	1906.82	PASS	AC=2;AF=0.919;AN=2;DP=3405;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2103,171,0:0,0,44,13
chr2	71906278	.	A	C	1755.85	PASS	AC=1;AF=0.615;AN=2;DP=2320;MQ=60;set=variant5-variant8-variant12-variant17-variant23-variant24-variant25-variant28-variant30-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:85,78:163:99:1847,0,2007:45,40,42,36
chr2	71907930	.	G	T	812.75	PASS	AC=1;AF=0.881;AN=2;DP=746;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:268,0,209:6,1,8,4
chr2	71909822	.	C	T	854.38	PASS	AC=1;AF=0.571;AN=2;DP=1095;MQ=60;set=variant4-variant5-variant8-variant11-variant23-variant24-variant25-variant27-variant28-variant30-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,40:86:99:1122,0,1331:11,35,10,30
chr2	72356303	.	A	G	166.73	PASS	AC=1;AF=0.5;AN=2;DP=110;MQ=60;set=variant5-variant12-variant21-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:405,0,294:7,4,10,4
chr2	72356449	.	G	T	1983.7	PASS	AC=1;AF=0.607;AN=2;DP=1990;MQ=60;set=variant-variant5-variant9-variant10-variant13-variant14-variant16-variant18-variant20-variant23-variant27-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,70:146:99:1652,0,1821:44,32,39,31
chr2	72356627	.	T	G	922.81	PASS	AC=1;AF=0.591;AN=2;DP=1055;set=variant-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant16-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:600,0,680:7,17,6,17
chr2	72356965	.	A	ACACACG	805.93	PASS	AC=1;AF=0.575;AN=2;DP=1426;set=variant4-variant5-variant6-variant10-variant12-variant13-variant16-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,28:67:99:1049,0,2763:25,14,17,11
chr2	72403387	.	CA	CAA,C	138.75	PASS	AC=1,0;AF=0.425,0.075;AN=2;DP=717;set=variant3-variant4-variant7-filterInvariant10-variant11-variant12-variant13-variant14-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant32-variant34-variant36-variant38-variant41	GT:DP:GQ:SB	0/1:34:99:10,12,5,7
chr2	72403408	.	GGAA	G	641.05	PASS	AC=1;AF=0.536;AN=2;DP=520;set=variant3-variant7-variant11-variant19-variant20-variant21-variant23-variant24-variant27-variant32-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:663,0,668:7,10,7,10
chr2	72403848	.	T	C	506.12	PASS	AC=1;AF=0.536;AN=2;DP=754;MQ=60;set=variant3-variant7-variant11-variant19-variant20-variant21-variant23-variant24-variant27-variant32-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:456,0,617:14,11,6,13
chr2	72405008	.	C	G	826.75	PASS	AC=1;AF=0.536;AN=2;DP=855;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant11-variant19-variant20-variant21-variant23-variant24-variant27-variant32-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,30:68:99:717,0,946:22,16,13,17
chr2	72405098	.	C	A	870.23	PASS	AC=1;AF=0.536;AN=2;DP=714;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant11-variant19-variant20-variant21-variant23-variant24-variant27-variant32-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,18:51:99:557,0,834:17,16,7,11
chr2	72405641	.	G	GTA	1653.62	PASS	AC=2;AF=0.58;AN=2;DP=1436;MQ=60;set=variant3-variant6-variant7-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:2024,135,0:0,0,22,23
chr2	72405665	.	A	G	340.6	PASS	AC=1;AF=0.538;AN=2;DP=688;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant10-variant13-variant14-variant16-variant17-variant18-variant22-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:479,0,491:12,11,8,12
chr2	72405827	.	A	T	1372.44	PASS	AC=2;AF=0.58;AN=2;DP=976;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:3073,208,0:0,0,44,25
chr2	72405833	.	A	G	1443.66	PASS	AC=2;AF=0.597;AN=2;DP=1272;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:3114,211,0:0,0,45,25
chr2	72690622	.	A	G	889.06	PASS	AC=2;AF=0.55;AN=2;DP=750;MQ=60;set=variant3-variant11-variant18-variant21-variant24-variant28-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2310,213,0:0,0,44,27
chr2	72690662	.	C	CT	1665.97	PASS	AC=2;AF=0.55;AN=2;DP=1028;MQ=60;set=variant3-variant11-variant18-variant21-variant24-variant28-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:3279,265,0:0,0,55,32
chr2	72691859	.	A	G	533.62	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=6.852;FractionInformativeReads=1;MQ=60;MQRankSum=1.354;QD=19.76;ReadPosRankSum=1.832;SOR=1.492;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,19:27:99:562,0,193:5,3,6,13
chr2	72692272	.	A	AAG	5283.99	PASS	AC=2;AF=0.989;AN=2;DP=5701;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,116:117:99:5201,342,0:1,0,69,47
chr2	72707874	.	A	G	701.76	PASS	AC=2;AF=0.591;AN=2;DP=877;MQ=60;set=variant-variant3-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant18-variant21-variant22-variant24-variant28-variant31-variant34-variant35-variant36-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:942,78,0:0,0,6,20
chr2	72742077	.	C	T	561.14	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=5.089;FractionInformativeReads=0.979;MQ=60;MQRankSum=-1.108;QD=11.69;ReadPosRankSum=0.204;SOR=1.629;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,20:47:99:589,0,771:19,8,17,3
chr2	72742083	.	GACAC	GAC,G,GACACAC,GACACACAC	1455.95	PASS	AC=0,0,0,1;AF=0.693,0.17,0.011,0.011;AN=2;DP=2385;set=Intersection	GT:DP:GQ:SB	0/4:45:99:18,7,16,4
chr2	73114555	.	C	G	778.75	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0.928;FractionInformativeReads=1;MQ=60;MQRankSum=-0.862;QD=11.45;ReadPosRankSum=-1.268;SOR=0.515;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:807,0,909:21,16,16,15
chr2	73151153	.	T	TG	1574.87	PASS	AC=1;AF=0.545;AN=2;DP=1306;MQ=60;set=variant-variant5-variant9-variant20-variant22-variant28-variant31-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:63,57:120:99:1749,0,1952:37,26,36,21
chr2	73151231	.	C	T	7557.27	PASS	AC=2;AF=0.955;AN=2;DP=9336;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,199:199:99:5785,588,0:0,0,114,85
chr2	73161551	.	A	G	592.95	PASS	AC=1;AF=0.593;AN=2;DP=928;MQ=60;set=variant-variant2-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant30-variant32-variant33-variant34-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,24:39:99:782,0,357:7,8,8,16
chr2	73169500	.	G	A	641.09	PASS	AC=1;AF=0.536;AN=2;DP=1060;MQ=60;set=variant-variant5-variant9-variant11-variant18-variant19-variant20-variant22-variant28-variant31-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:43,41:84:99:1055,0,1088:24,19,18,23
chr2	73169609	.	C	G	1255.14	PASS	AC=1;AF=0.5;AN=2;DP=409;MQ=60;set=variant18-variant19-variant28-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,31:72:99:855,0,1148:20,21,18,13
chr2	73170060	.	G	A	529.55	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=0;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:919,0,975:20,17,17,13
chr2	73170763	.	G	C	1067.77	PASS	AC=1;AF=0.5;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,18:68:99:431,0,1362:26,24,7,11
chr2	73188273	.	G	A	837.77	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=0.789;FractionInformativeReads=1;MQ=60;MQRankSum=-0.909;QD=8.55;ReadPosRankSum=-1.29;SOR=0.843;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,37:98:99:866,0,1549:27,34,15,22
chr2	73195837	.	TTTCC	T	286.85	PASS	AC=2;AF=0.647;AN=2;DP=968;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:94:1329,94,0:0,0,11,20
chr2	73215512	.	A	G	734.29	PASS	AC=2;AF=0.625;AN=2;DP=652;MQ=60;set=variant-variant2-variant3-variant6-variant11-variant24-variant27-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:1882,194,0:0,0,30,35
chr2	73215562	.	T	C	652.74	PASS	AC=2;AF=0.587;AN=2;DP=1181;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant13-variant22-variant23-variant24-variant26-variant27-variant30-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1465,131,0:0,0,14,30
chr2	73215647	.	C	T	159.14	PASS	AC=2;AF=0.625;AN=2;DP=124;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant11-variant24-variant27-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:385,30,0:0,0,2,8
chr2	73226090	.	G	A	854.07	PASS	AC=2;AF=0.6;AN=2;DP=1577;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant22-variant23-variant24-variant26-variant27-variant33-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2609,252,0:0,0,46,38
chr2	73226259	.	A	G	196.29	PASS	AC=2;AF=0.591;AN=2;DP=725;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant13-variant22-variant23-variant24-variant26-variant27-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1255,102,0:0,0,5,29
chr2	73226282	.	T	C	188.87	PASS	AC=2;AF=0.591;AN=2;DP=453;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant13-variant22-variant23-variant24-variant26-variant27-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:883,63,0:0,0,1,20
chr2	73227743	.	C	T	459.34	PASS	AC=2;AF=0.625;AN=2;DP=251;MQ=60;set=variant-variant2-variant3-variant6-variant11-variant24-variant27-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1184,93,0:0,0,3,28
chr2	73285752	.	T	A	1397.21	PASS	AC=1;AF=0.55;AN=2;DP=2881;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant22-variant23-variant24-variant26-variant27-variant33-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,63:118:99:1700,0,1262:27,28,21,42
chr2	73300459	.	A	G	52.74	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant18-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:56:75,0,56:2,0,2,0
chr2	73301318	.	G	A	623.01	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.099;QD=12.98;ReadPosRankSum=-0.644;SOR=0.711;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:651,0,789:13,14,10,11
chr2	73301618	.	T	C	567.93	PASS	AC=1;AF=0.571;AN=2;DP=1256;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant22-variant23-variant24-variant26-variant27-variant31-variant33-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,21:52:99:498,0,834:19,12,10,11
chr2	73301687	.	G	A	669.94	PASS	AC=1;AF=0.571;AN=2;DP=1241;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant22-variant23-variant24-variant26-variant27-variant31-variant33-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,25:62:99:508,0,995:15,22,13,12
chr2	73302891	.	G	GGCCT	425.39	PASS	AC=1;AF=0.571;AN=2;DP=1300;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant22-variant23-variant24-variant26-variant27-variant31-variant33-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:708,0,1242:9,15,7,11
chr2	73315170	.	C	T	587.53	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=3.035;FractionInformativeReads=1;MQ=60;MQRankSum=1.254;QD=15.06;ReadPosRankSum=1.113;SOR=0.33;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:616,0,506:14,4,14,7
chr2	73316540	.	A	T	1441.95	PASS	AC=1;AF=0.571;AN=2;DP=3671;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant22-variant23-variant24-variant26-variant27-variant31-variant33-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,69:145:99:1806,0,1887:34,42,35,34
chr2	73339430	.	T	G	1975.91	PASS	AC=1;AF=0.849;AN=2;DP=6444;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,58:154:99:1237,0,2254:53,43,33,25
chr2	73339708	.	G	A	2255.88	PASS	AC=1;AF=0.724;AN=2;DP=10900;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:138,131:269:99:3180,0,3452:73,65,67,64
chr2	73430234	.	T	C	1149.12	PASS	AC=1;AF=0.742;AN=2;DP=1325;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:424,0,316:4,9,5,10
chr2	73435601	.	T	C	827.16	PASS	AC=1;AF=0.75;AN=2;DP=406;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant17-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,48:88:99:1163,0,917:24,16,29,19
chr2	73438442	.	GA	GAA,G	243.52	PASS	AC=1,0;AF=0.71,0.048;AN=2;DP=684;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant33-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:25:99:8,5,7,5
chr2	73438888	.	C	T	112.69	PASS	AC=1;AF=0.75;AN=2;DP=76;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant17-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:99:128,0,412:8,7,4,3
chr2	73447775	.	A	G	1415.21	PASS	AC=1;AF=0.679;AN=2;DP=3523;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,48:111:99:1219,0,1568:30,33,26,22
chr2	73448174	.	C	T	817.14	PASS	AC=1;AF=0.75;AN=2;DP=301;MQ=60;set=variant5-variant17-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,43:88:99:1030,0,1350:32,13,28,15
chr2	73460293	.	AGGGCC	A	1751.3	PASS	AC=1;AF=0.726;AN=2;DP=1391;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,32:50:99:1229,0,897:5,13,14,18
chr2	73467676	.	GAA	G	1240.01	PASS	AC=1;AF=0.667;AN=2;DP=2743;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,62:125:99:2414,0,2427:26,37,24,38
chr2	73471193	.	GT	G,GTT	130.77	PASS	AC=1,0;AF=0.457,0.043;AN=2;DP=2427;set=filterInvariant-filterInvariant2-variant3-filterInvariant5-variant6-variant7-variant8-filterInvariant9-filterInvariant10-filterInvariant11-variant13-variant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-variant20-variant21-filterInvariant23-filterInvariant24-variant25-variant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant31-filterInvariant32-variant33-variant34-variant36-variant39-variant40-filterInvariant41-filterInvariant42-variant44	GT:DP:GQ:SB	0/1:49:99:12,26,3,8
chr2	73472012	.	G	A	1618.86	PASS	AC=1;AF=0.742;AN=2;DP=1460;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:438,0,530:4,14,5,10
chr2	73477317	.	CCT	C	802.19	PASS	AC=1;AF=0.75;AN=2;DP=303;MQ=60;set=variant5-variant17-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,37:93:99:1385,0,2484:34,22,28,9
chr2	73480269	.	A	C	379.37	PASS	AC=1;AF=0.75;AN=2;DP=141;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant17-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:554,0,500:3,13,3,15
chr2	73483057	.	T	C	1224.76	PASS	AC=1;AF=0.742;AN=2;DP=1533;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,24:46:99:627,0,612:12,10,13,11
chr2	73483753	.	C	T	974.79	PASS	AC=1;AF=0.75;AN=2;DP=484;FractionInformativeReads=1;MQ=60;set=variant5-variant17-variant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,60:119:99:1650,0,1481:26,33,23,37
chr2	73484428	.	A	G	651.35	PASS	AC=1;AF=0.7;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant5-variant17-variant21-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:527,0,861:20,11,14,8
chr2	73490412	.	A	G	847.65	PASS	AC=1;AF=0.719;AN=2;DP=1760;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,30:59:99:748,0,760:13,16,16,14
chr2	73491683	.	G	A	1214.74	PASS	AC=1;AF=0.568;AN=2;DP=914;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant11-variant14-variant15-variant19-variant22-variant23-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,25:41:99:796,0,359:8,8,5,20
chr2	73493487	.	G	A	288.06	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:256,0,455:10,9,6,6
chr2	73511421	.	C	T	162.87	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.057;QD=4.94;ReadPosRankSum=0.842;SOR=0.616;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,10:33:99:191,0,580:12,11,5,5
chr2	73613031	.	TGGAGGAGGA	TGGA,TGGAGGAGGAGGA,TGGAGGA,TGGAGGAGGAGGAGGA,T	601.68	PASS	AC=1,0,0,1,0;AF=0.318,0.42,0.045,0.034,0.011;AN=2;DP=2483;set=Intersection	GT:DP:GQ:SB	1/4:41:99:3,0,29,9
chr2	73650122	.	T	A	811.79	PASS	AC=2;AF=0.716;AN=2;DP=2295;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2079,180,0:0,0,16,44
chr2	73651967	.	C	T	1053.98	PASS	AC=1;AF=0.563;AN=2;DP=2388;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,51:90:99:1297,0,949:17,22,22,29
chr2	73675019	.	CT	C	150.8	PASS	AC=2;AF=0.783;AN=2;DP=258;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant20-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:125,12,0:0,0,3,1
chr2	73675227	.	T	TCTC	2725.07	PASS	AC=2;AF=0.737;AN=2;DP=5569;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:6288,424,0:0,0,82,59
chr2	73675525	.	A	G	2579.16	PASS	AC=1;AF=0.5;AN=2;DP=380;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:114,72:186:99:1865,0,3082:47,67,27,45
chr2	73675669	.	T	G	1353.97	PASS	AC=2;AF=0.919;AN=2;DP=5417;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:4205,380,0:0,0,72,55
chr2	73675844	.	C	T	1611.65	PASS	AC=2;AF=0.716;AN=2;DP=7457;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,199:199:99:6351,596,0:0,0,107,92
chr2	73675973	.	G	A	3005.53	PASS	AC=1;AF=0.5;AN=2;DP=277;FS=2.028;FractionInformativeReads=0.996;MQ=60;MQRankSum=1.787;QD=10.85;ReadPosRankSum=-3.929;SOR=0.56;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:155,121:276:99:3034,0,4096:85,70,62,59
chr2	73677833	.	A	G	3888.18	PASS	AC=1;AF=0.565;AN=2;DP=7753;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:164,126:290:99:3239,0,4120:78,86,70,56
chr2	73677898	.	G	C	3933.08	PASS	AC=1;AF=0.563;AN=2;DP=8111;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:170,122:292:99:3290,0,4648:88,82,64,58
chr2	73679280	.	A	G	1640.65	PASS	AC=1;AF=0.563;AN=2;DP=3771;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,76:151:99:2338,0,1981:35,40,34,42
chr2	73679990	.	T	A	1063.82	PASS	AC=1;AF=0.563;AN=2;DP=2586;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,55:106:99:1327,0,1300:23,28,26,29
chr2	73680508	.	G	C	1400.65	PASS	AC=1;AF=0.563;AN=2;DP=2219;FractionInformativeReads=1;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,51:80:99:1213,0,904:13,16,21,30
chr2	73717567	.	G	T	1104.89	PASS	AC=1;AF=0.563;AN=2;DP=2034;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,43:95:99:1014,0,1437:28,24,22,21
chr2	73717656	.	A	G	1131.43	PASS	AC=1;AF=0.563;AN=2;DP=2410;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,42:98:99:1001,0,1530:30,26,25,17
chr2	73761881	.	G	A	308.02	PASS	AC=1;AF=0.563;AN=2;DP=738;MQ=60;set=variant2-variant6-variant7-variant10-variant13-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:702,0,328:10,2,18,1
chr2	73762096	.	C	T	1337.15	PASS	AC=1;AF=0.5;AN=2;DP=117;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.256;QD=11.43;ReadPosRankSum=-0.97;SOR=0.68;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,51:117:99:1365,0,1633:27,39,21,30
chr2	73800270	.	G	A	1717.32	PASS	AC=1;AF=0.5;AN=2;DP=129;FS=1.395;FractionInformativeReads=1;MQ=60;MQRankSum=-0.837;QD=13.31;ReadPosRankSum=-3.54;SOR=0.571;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,72:129:99:1746,0,1333:32,25,38,34
chr2	73800527	.	G	A	1715.38	PASS	AC=1;AF=0.5;AN=2;DP=171;FS=1.916;FractionInformativeReads=1;MQ=60;MQRankSum=-1.209;QD=10.03;ReadPosRankSum=0.117;SOR=0.863;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:99,72:171:99:1744,0,2538:51,48,40,32
chr2	73828310	.	T	C	1387.08	PASS	AC=2;AF=0.724;AN=2;DP=5499;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:5383,462,0:0,0,118,36
chr2	73828538	.	G	A	2577.55	PASS	AC=2;AF=0.737;AN=2;DP=8418;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,222:222:99:7338,664,0:0,0,75,147
chr2	73829372	.	C	T	1433.23	PASS	AC=1;AF=0.543;AN=2;DP=3463;set=variant2-variant6-variant7-variant10-variant14-variant15-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,71:174:99:1521,0,2628:59,44,38,33
chr2	73830454	.	A	T	2323.84	PASS	AC=1;AF=0.5;AN=2;DP=320;FractionInformativeReads=1;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,54:101:99:2112,0,4178:25,22,32,22
chr2	73830455	.	C	T	2320.84	PASS	AC=1;AF=0.5;AN=2;DP=321;FractionInformativeReads=1;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,53:100:99:2112,0,4178:25,22,31,22
chr2	73830458	.	A	G	2320.84	PASS	AC=1;AF=0.5;AN=2;DP=319;FractionInformativeReads=1;set=variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,53:100:99:2084,0,4181:25,22,31,22
chr2	73867897	.	A	G	270.12	PASS	AC=2;AF=0.919;AN=2;DP=1099;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:650,60,0:0,0,14,6
chr2	73898118	.	C	T	396.83	PASS	AC=2;AF=0.73;AN=2;DP=1149;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:753,57,0:0,0,17,2
chr2	73898359	.	G	A	686.91	PASS	AC=2;AF=0.73;AN=2;DP=2040;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1480,138,0:0,0,14,32
chr2	73898420	.	A	G	323.76	PASS	AC=2;AF=0.73;AN=2;DP=694;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:486,36,0:0,0,1,11
chr2	73899955	.	G	T	3007.29	PASS	AC=2;AF=0.93;AN=2;DP=13210;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,289:290:99:8805,856,0:1,0,184,105
chr2	73900210	.	A	G	938.26	PASS	AC=2;AF=0.919;AN=2;DP=3273;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2935,217,0:0,0,9,63
chr2	73900918	.	CTT	CT,C	42.93	PASS	AC=1,0;AF=0.523,0.151;AN=2;DP=1727;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:43:31:4,4,25,10
chr2	73927931	.	A	G	1248.66	PASS	AC=2;AF=0.789;AN=2;DP=4756;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,139:141:99:4724,372,0:1,1,72,67
chr2	73928098	.	C	G	1476.79	PASS	AC=2;AF=0.716;AN=2;DP=11028;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,335:335:99:10067,1004,0:0,0,173,162
chr2	73928366	.	G	C	2446.4	PASS	AC=2;AF=0.708;AN=2;DP=9527;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,241:241:99:7405,721,0:0,0,111,130
chr2	73956940	.	CTT	CT,C	247.98	PASS	AC=2,0;AF=0.588,0.013;AN=2;DP=1286;set=variant-variant2-variant3-variant4-variant5-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:40:20:3,1,24,12
chr2	73957124	.	A	G	1396.92	PASS	AC=2;AF=0.716;AN=2;DP=4382;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3348,334,0:0,0,48,64
chr2	73957227	.	T	A	460.72	PASS	AC=2;AF=0.716;AN=2;DP=1241;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:994,78,0:0,0,5,21
chr2	73959935	.	T	A	504.77	PASS	AC=2;AF=0.743;AN=2;DP=561;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:768,57,0:0,0,8,11
chr2	73959960	.	G	T	471.79	PASS	AC=2;AF=0.743;AN=2;DP=439;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:734,51,0:0,0,6,11
chr2	73964631	.	C	T	46.15	PASS	AC=2;AF=0.689;AN=2;DP=537;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:547,45,0:0,0,4,11
chr2	73993436	.	CAA	CA,C	119.83	PASS	AC=2,0;AF=0.786,0.024;AN=2;DP=144;set=variant3-variant4-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant18-variant22-variant24-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant41	GT:DP:GQ:SB	1/1:4:12:0,0,4,0
chr2	73994074	.	G	A	2540.04	PASS	AC=2;AF=0.943;AN=2;DP=2506;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2630,243,0:0,0,27,54
chr2	74000701	.	C	T	113.67	PASS	AC=2;AF=0.773;AN=2;DP=286;FS=0;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:585,39,0:0,0,4,9
chr2	74007136	.	T	C	492.02	PASS	AC=2;AF=0.73;AN=2;DP=3198;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2605,237,0:0,0,39,40
chr2	74007345	.	A	G	591.17	PASS	AC=2;AF=0.724;AN=2;DP=1867;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2057,174,0:0,0,24,34
chr2	74035880	.	A	G	218.73	PASS	AC=2;AF=0.989;AN=2;DP=461;FS=0;MQRankSum=-1.221;ReadPosRankSum=-0.322;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:198,24,0:0,0,4,4
chr2	74072466	.	A	G	31.69	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.198;QD=4.53;ReadPosRankSum=-1.495;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:60:60,0,162:1,4,0,2
chr2	74087290	.	T	C	1005.22	PASS	AC=1;AF=0.588;AN=2;DP=1437;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant7-variant12-variant13-variant16-variant19-variant21-variant24-variant25-variant27-variant30-variant31-variant32-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,45:86:99:1199,0,1106:16,25,14,31
chr2	74090063	.	TA	T	3444.3	PASS	AC=1;AF=0.587;AN=2;DP=5607;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:115,114:229:99:2733,0,2815:67,48,60,54
chr2	74091327	.	T	C	808.6	PASS	AC=1;AF=0.648;AN=2;DP=1557;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,24:63:99:636,0,1074:19,20,11,13
chr2	74091805	.	C	T	682.57	PASS	AC=1;AF=0.587;AN=2;DP=1608;MQ=60;set=variant-variant2-variant6-variant7-variant10-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant27-variant30-variant31-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:38,39:77:99:867,0,930:21,17,19,20
chr2	74093652	.	T	C	1180.11	PASS	AC=1;AF=0.58;AN=2;DP=2833;MQ=60;set=variant-variant2-variant6-variant7-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,64:119:99:1481,0,1498:24,31,31,33
chr2	74093682	.	T	A	1210.94	PASS	AC=1;AF=0.58;AN=2;DP=2445;MQ=60;set=variant-variant2-variant6-variant7-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,51:98:99:1272,0,1297:18,29,20,31
chr2	74119927	.	G	T	136.15	PASS	AC=1;AF=0.75;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;set=variant15-variant22-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:76:76,0,77:2,1,1,2
chr2	74120181	.	A	G	976.83	PASS	AC=1;AF=0.62;AN=2;DP=1403;MQ=60;set=variant3-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,17:48:99:337,0,850:12,19,9,8
chr2	74123827	.	C	T	131.98	PASS	AC=1;AF=0.798;AN=2;DP=717;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:274,0,272:7,2,8,1
chr2	74124142	.	C	T	649.63	PASS	AC=1;AF=0.791;AN=2;DP=3040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,36:63:99:922,0,731:9,18,13,23
chr2	74124342	.	A	G	311.36	PASS	AC=1;AF=0.791;AN=2;DP=1644;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,20:37:99:497,0,519:9,8,11,9
chr2	74124528	.	T	C	93.19	PASS	AC=1;AF=0.868;AN=2;DP=354;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:70:163,0,70:0,2,1,4
chr2	74128391	.	G	C	1069.2	PASS	AC=1;AF=0.814;AN=2;DP=5720;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,64:123:99:1689,0,1647:36,23,45,19
chr2	74128433	.	C	T	1772.68	PASS	AC=1;AF=0.814;AN=2;DP=8509;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,99:189:99:2368,0,2284:50,40,62,37
chr2	74128660	.	TG	T	187.59	PASS	AC=1;AF=0.5;AN=2;DP=606;set=variant-variant4-filterInvariant5-variant6-variant7-variant8-variant11-variant12-variant13-variant19-variant20-variant27-variant29-variant30-variant31-variant34-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,8:44:99:151,0,1576:7,29,2,6
chr2	74129664	.	A	G	4704.79	PASS	AC=1;AF=0.662;AN=2;DP=7374;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,64:171:99:1673,0,2965:57,50,40,24
chr2	74129712	.	C	G	5052.08	PASS	AC=1;AF=0.662;AN=2;DP=7689;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,86:199:99:2188,0,2942:62,51,49,37
chr2	74129895	.	G	A	4704.72	PASS	AC=1;AF=0.662;AN=2;DP=5758;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,72:165:99:1710,0,2429:41,52,31,41
chr2	74135355	.	A	G	869.14	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=1.882;FractionInformativeReads=0.988;MQ=60;MQRankSum=-0.613;QD=10.35;ReadPosRankSum=-3.795;SOR=1.025;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,35:83:99:897,0,1192:28,20,23,12
chr2	74136357	.	A	C	609.48	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.3;QD=14.87;ReadPosRankSum=1.082;SOR=0.859;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:638,0,594:6,15,5,15
chr2	74140581	.	A	T	1163.01	PASS	AC=1;AF=0.692;AN=2;DP=1986;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,18:46:99:508,0,855:21,7,15,3
chr2	74140616	.	C	T	962.64	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=3.544;FractionInformativeReads=1;MQ=60;MQRankSum=-0.116;QD=13.19;ReadPosRankSum=-0.79;SOR=1.177;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,35:73:99:991,0,1022:26,12,27,8
chr2	74140789	.	T	C	3409.53	PASS	AC=1;AF=0.692;AN=2;DP=5725;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,78:165:99:1923,0,2275:39,48,32,46
chr2	74142164	.	GA	G	242.62	PASS	AC=1;AF=0.662;AN=2;DP=674;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:182,0,216:1,7,1,6
chr2	74142248	.	G	C	42.23	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.956;QD=5.28;ReadPosRankSum=0.322;SOR=1.034;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:70:70,0,117:3,2,1,2
chr2	74146869	.	G	A	305.44	PASS	AC=1;AF=0.744;AN=2;DP=1431;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:380,0,543:8,13,7,9
chr2	74153905	.	C	T	3881.89	PASS	AC=2;AF=1;AN=2;DP=8005;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,213:213:99:6720,636,0:0,0,134,79
chr2	74159530	.	C	T	189.15	PASS	AC=1;AF=0.5;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,16:25:99:480,0,234:6,3,11,5
chr2	74159734	.	T	C	1293.91	PASS	AC=1;AF=0.5;AN=2;DP=530;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:57,80:137:99:2020,0,1256:32,25,42,38
chr2	74159925	.	G	A	112.63	PASS	AC=1;AF=0.5;AN=2;DP=102;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,17:25:99:511,0,230:1,7,4,13
chr2	74174145	.	A	G	43.74	PASS	AC=1;AF=0.763;AN=2;DP=437;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:73:162,0,73:0,2,1,3
chr2	74185876	.	A	T	1410.22	PASS	AC=1;AF=0.708;AN=2;DP=5241;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,72:135:99:1894,0,1464:35,28,42,30
chr2	74229975	.	G	T	2360.22	PASS	AC=1;AF=0.563;AN=2;DP=2392;MQ=60;set=variant4-variant8-variant12-variant16-variant17-variant22-variant24-variant25-variant26-variant28-variant34-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:59,60:119:99:1358,0,1463:37,22,34,26
chr2	74230310	.	CGTGCGTGTGT	C	1722.22	PASS	AC=1;AF=0.563;AN=2;DP=1274;MQ=60;set=variant4-variant8-variant12-variant16-variant17-variant22-variant24-variant25-variant26-variant28-variant34-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,36:77:99:1329,0,4072:21,20,21,15
chr2	74273383	.	T	TC	1149.23	PASS	AC=2;AF=0.586;AN=2;DP=2733;MQ=60;set=variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2886,277,0:0,0,58,30
chr2	74300717	.	T	C	1210.73	PASS	AC=2;AF=0.583;AN=2;DP=2958;MQ=60;set=variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2145,218,0:0,0,37,36
chr2	74320262	.	C	G	217.59	PASS	AC=2;AF=0.583;AN=2;DP=1015;MQ=60;set=variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1166,99,0:0,0,11,22
chr2	74320832	.	A	G	683.7	PASS	AC=1;AF=0.5;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:672,0,635:10,16,7,17
chr2	74326902	.	C	T	77.95	PASS	AC=2;AF=0.677;AN=2;DP=522;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant29-variant31-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:65:591,65,0:0,0,10,12
chr2	74329087	.	G	A	3223.51	PASS	AC=1;AF=0.5;AN=2;DP=545;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:138,119:257:99:2762,0,3585:69,69,55,64
chr2	74329575	.	TC	T	443.28	PASS	AC=1;AF=0.528;AN=2;DP=700;MQ=60;set=variant-variant3-variant4-variant8-variant11-variant12-variant16-variant22-variant24-variant25-variant28-variant29-variant33-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,6:20:99:120,0,326:6,8,1,5
chr2	74332825	.	AAAGC	A	1312.85	PASS	AC=2;AF=0.977;AN=2;DP=2182;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2230,154,0:0,0,28,23
chr2	74333220	.	C	CT	6402.99	PASS	AC=2;AF=0.977;AN=2;DP=12538;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:6,220:226:99:5851,507,0:4,2,86,134
chr2	74334790	.	A	G	5709.82	PASS	AC=1;AF=0.548;AN=2;DP=8597;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant12-variant13-variant16-variant22-variant24-variant25-variant28-variant29-variant33-variant34-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:200,182:382:99:4912,0,5337:118,82,114,68
chr2	74361828	.	C	T	1241.72	PASS	AC=1;AF=0.5;AN=2;DP=206;FS=0;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,65:101:99:1749,0,927:21,15,37,28
chr2	74362063	.	G	T	398.37	PASS	AC=1;AF=0.5;AN=2;DP=56;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:450,0,338:4,9,3,12
chr2	74362090	.	A	G	623.04	PASS	AC=2;AF=0.955;AN=2;DP=943;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:668,48,0:0,0,1,15
chr2	74383630	.	G	A	3017.79	PASS	AC=1;AF=0.536;AN=2;DP=2777;MQ=60;set=variant-variant6-variant8-variant12-variant17-variant18-variant22-variant24-variant25-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:77,77:154:99:1959,0,2046:33,44,30,47
chr2	74383911	.	G	A	103.6	PASS	AC=2;AF=0.69;AN=2;DP=309;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant6-variant8-variant10-variant11-variant12-variant13-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:401,33,0:0,0,5,6
chr2	74383912	.	T	C	103.6	PASS	AC=1;AF=0.571;AN=2;DP=146;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant12-variant17-variant18-variant22-variant24-variant25-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:98:115,0,98:2,3,3,3
chr2	74394034	.	G	C	399.57	PASS	AC=1;AF=0.533;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant8-variant12-variant17-variant18-variant22-variant24-variant25-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:175,0,422:11,1,5,1
chr2	74400503	.	GTTTT	GTTTTT,GTTT,GTT,GTTTTTTT,GTTTTTT,G,GT	121.96	PASS	AC=0,0,0,0,0,1,0;AF=0.167,0.095,0.024,0.024,0.095,0.095,0.024;AN=2;DP=571;set=variant2-variant3-filterInvariant7-variant9-variant13-variant16-variant17-variant18-variant19-filterInvariant21-filterInvariant22-filterInvariant23-variant25-variant26-filterInvariant31-variant35-variant37-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/6:10:99:0,4,0,6
chr2	74405867	.	T	G	2093.89	PASS	AC=1;AF=0.536;AN=2;DP=1964;MQ=60;set=variant-variant6-variant8-variant12-variant17-variant18-variant22-variant24-variant25-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,65:119:99:1619,0,1151:27,27,32,33
chr2	74405952	.	T	C	1167.6	PASS	AC=1;AF=0.536;AN=2;DP=973;MQ=60;set=variant-variant6-variant8-variant12-variant17-variant18-variant22-variant24-variant25-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:38,50:88:99:1183,0,851:18,20,21,29
chr2	74406055	.	G	T	198.29	PASS	AC=1;AF=0.543;AN=2;DP=678;MQ=60;set=variant2-variant3-variant4-variant6-variant10-variant11-variant12-variant13-variant17-variant20-variant21-variant23-variant25-variant26-variant29-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:314,0,503:6,11,6,8
chr2	74425932	.	G	A	1778.74	PASS	AC=1;AF=0.538;AN=2;DP=1741;MQ=60;set=variant6-variant8-variant12-variant17-variant18-variant22-variant24-variant25-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:81,69:150:99:1662,0,2091:33,48,31,38
chr2	74448672	.	C	A	934.44	PASS	AC=1;AF=0.536;AN=2;DP=947;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant12-variant17-variant18-variant22-variant24-variant25-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,21:52:99:518,0,863:10,21,6,15
chr2	74450125	.	T	C	1675.15	PASS	AC=1;AF=0.556;AN=2;DP=1229;set=variant6-variant8-variant12-variant13-variant17-variant18-variant22-variant24-variant25-variant26-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,29:62:99:841,0,895:8,25,6,23
chr2	74450134	.	CT	C,CTT,CTTT	35.91	PASS	AC=1,0,0;AF=0.375,0.083,0.042;AN=2;DP=689;MQ=60;set=filterInvariant5-variant9-filterInvariant11-filterInvariant19-variant20-variant24-filterInvariant27-filterInvariant28-filterInvariant35-variant39-filterInvariant41-filterInvariant42	GT:DP:GQ:SB	0/1:33:84:5,19,1,8
chr2	74452327	.	G	A	51.21	PASS	AC=1;AF=0.545;AN=2;DP=111;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant17-variant22-variant24-variant25-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:66:160,0,66:2,0,1,4
chr2	74482892	.	T	C	727.61	PASS	AC=2;AF=0.543;AN=2;DP=1549;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2368,219,0:0,0,49,24
chr2	74489490	.	CTTT	CTT,CT,CTTTTT,C	168.93	PASS	AC=1,0,0,0;AF=0.426,0.074,0.037,0.019;AN=2;DP=854;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant13-filterInvariant15-variant16-filterInvariant19-variant22-variant23-variant24-variant25-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:20:16:0,4,4,12
chr2	74512808	.	G	A	388.08	PASS	AC=2;AF=0.588;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant13-variant17-variant18-variant20-variant21-variant22-variant32-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:590,48,0:0,0,13,3
chr2	74555415	.	C	A	52.18	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.922;QD=6.52;ReadPosRankSum=-0.421;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:80:80,0,89:1,3,2,2
chr2	74566185	.	C	A	108.12	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=0;FractionInformativeReads=1;MQ=60;set=variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:270,0,229:1,7,2,7
chr2	74570654	.	A	G	33.95	PASS	AC=1;AF=0.528;AN=2;DP=189;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:205,0,210:2,6,3,4
chr2	74589019	.	A	G	500.96	PASS	AC=1;AF=0.528;AN=2;DP=642;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:352,0,637:6,15,6,7
chr2	74589330	.	C	A	2069.12	PASS	AC=1;AF=0.5;AN=2;DP=121;FS=3.326;FractionInformativeReads=0.992;MQ=60;MQRankSum=-1.739;QD=17.1;ReadPosRankSum=-0.218;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,56:120:99:2097,0,3213:31,33,23,33
chr2	74589333	.	C	T	2047.56	PASS	AC=1;AF=0.5;AN=2;DP=120;FS=3.378;FractionInformativeReads=1;MQ=60;MQRankSum=0.024;QD=17.06;ReadPosRankSum=1.089;SOR=1.06;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,54:120:99:2076,0,3228:31,35,21,33
chr2	74589360	.	G	A	1573.5	PASS	AC=1;AF=0.5;AN=2;DP=227;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,47:105:99:1204,0,1489:24,34,17,30
chr2	74589984	.	A	G	1091.56	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=6.589;FractionInformativeReads=1;MQ=60;MQRankSum=-1.348;QD=11.14;ReadPosRankSum=-1.276;SOR=0.681;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,40:98:99:1120,0,1819:34,24,18,22
chr2	74592937	.	T	C	1510.22	PASS	AC=1;AF=0.5;AN=2;DP=92;FS=0.797;FractionInformativeReads=1;MQ=60;MQRankSum=-1.096;QD=16.42;ReadPosRankSum=-0.182;SOR=0.608;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,58:92:99:1538,0,771:19,15,31,27
chr2	74595014	.	G	A	2919.98	PASS	AC=1;AF=0.528;AN=2;DP=3596;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:88,97:185:99:2390,0,2091:46,42,48,49
chr2	74596168	.	G	GA	532.43	PASS	AC=2;AF=0.579;AN=2;DP=383;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:54:657,54,0:0,0,11,5
chr2	74596321	.	T	C	1144.14	PASS	AC=1;AF=0.5;AN=2;DP=137;FS=4.169;FractionInformativeReads=1;MQ=60;MQRankSum=-0.957;QD=8.35;ReadPosRankSum=-2.256;SOR=0.498;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:84,53:137:99:1172,0,2116:48,36,26,27
chr2	74596640	.	T	G	1751.82	PASS	AC=1;AF=0.5;AN=2;DP=150;FS=4.999;FractionInformativeReads=1;MQ=60;MQRankSum=1.354;QD=11.68;ReadPosRankSum=-0.338;SOR=0.401;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,77:150:99:1780,0,1671:25,48,33,44
chr2	74596653	.	G	A	1441.14	PASS	AC=1;AF=0.5;AN=2;DP=123;FS=2.436;FractionInformativeReads=1;MQ=60;MQRankSum=-1.515;QD=11.72;ReadPosRankSum=-0.605;SOR=0.458;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,63:123:99:1469,0,1563:19,41,24,39
chr2	74597527	.	G	A	2006.4	PASS	AC=1;AF=0.528;AN=2;DP=3402;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,88:157:99:2359,0,1795:34,35,43,45
chr2	74597937	.	G	T	1671.12	PASS	AC=1;AF=0.5;AN=2;DP=123;FS=3.326;FractionInformativeReads=1;MQ=60;MQRankSum=-0.619;QD=13.59;ReadPosRankSum=-1.521;SOR=0.442;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,69:123:99:1699,0,1461:21,33,32,37
chr2	74597984	.	C	A	815.95	PASS	AC=1;AF=0.5;AN=2;DP=264;FractionInformativeReads=1;MQ=60;set=variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,44:85:99:1171,0,1152:15,26,15,29
chr2	74598999	.	AAAG	A	816.2	PASS	AC=1;AF=0.571;AN=2;DP=635;MQ=60;set=variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant26-variant28-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,15:24:99:588,0,399:4,5,7,8
chr2	74601383	.	A	C	233.47	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3101;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:54,26:80:99:334,0,760:13,41,25,1
chr2	74601606	.	CAGG	C	1488.96	PASS	AC=1;AF=0.5;AN=2;DP=111;FS=0.741;FractionInformativeReads=0.955;MQ=60;MQRankSum=-2.452;QD=13.41;ReadPosRankSum=-1.628;SOR=0.595;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,41:106:99:1526,0,3285:30,35,20,21
chr2	74604456	.	A	C	1386.4	PASS	AC=1;AF=0.5;AN=2;DP=96;FS=2.705;FractionInformativeReads=1;MQ=60;MQRankSum=-1.637;QD=14.44;ReadPosRankSum=1.763;SOR=0.442;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,55:96:99:1415,0,1073:24,17,28,27
chr2	74604673	.	C	T	575.41	PASS	AC=2;AF=0.588;AN=2;DP=829;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2047,180,0:0,0,31,29
chr2	74604887	.	T	A	1018.28	PASS	AC=1;AF=0.5;AN=2;DP=82;FS=5.799;FractionInformativeReads=1;MQ=60;MQRankSum=0.539;QD=12.42;ReadPosRankSum=-1.281;SOR=0.289;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,39:82:99:1047,0,1678:15,28,19,20
chr2	74604895	.	T	C	657.84	PASS	AC=1;AF=0.531;AN=2;DP=1255;FractionInformativeReads=1;MQ=60;set=variant7-variant9-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant28-variant32-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,43:84:99:1158,0,1514:19,22,15,28
chr2	74607517	.	A	G	1509.62	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=1.578;FractionInformativeReads=1;MQ=60;MQRankSum=-0.352;QD=14.11;ReadPosRankSum=-3.234;SOR=0.502;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,56:107:99:1538,0,1323:31,20,31,25
chr2	74641353	.	A	G	1522.73	PASS	AC=1;AF=0.5;AN=2;DP=258;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,54:118:99:1381,0,1595:39,25,31,23
chr2	74641624	.	G	C	3135.96	PASS	AC=1;AF=0.575;AN=2;DP=4399;MQ=60;set=variant3-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:109,123:232:99:3163,0,2808:55,54,63,60
chr2	74645676	.	G	C	1984.88	PASS	AC=1;AF=0.5;AN=2;DP=477;MQ=60;set=variant22-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,89:160:99:2156,0,1620:28,43,37,52
chr2	74648589	.	C	T	2845.61	PASS	AC=1;AF=0.5;AN=2;DP=211;FS=1.078;FractionInformativeReads=1;MQ=60;MQRankSum=-0.647;QD=13.49;ReadPosRankSum=3.636;SOR=0.789;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:87,124:211:99:2874,0,1999:42,45,57,67
chr2	74649916	.	TC	T	98.53	PASS	AC=1;AF=0.5;AN=2;DP=1590;set=filterInvariant-filterInvariant2-filterInvariant5-variant6-filterInvariant7-variant8-variant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant16-variant20-variant22-filterInvariant23-variant24-variant25-variant27-variant29-variant30-variant31-variant33-filterInvariant35-filterInvariant36-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,10:43:91:91,0,664:20,13,7,3
chr2	74649921	.	C	A	773.95	PASS	AC=1;AF=0.5;AN=2;DP=2512;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,34:51:99:599,0,229:10,7,22,12
chr2	74653043	.	G	A	664.81	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=3.249;QD=10.9;ReadPosRankSum=-2.627;SOR=0.772;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:693,0,910:16,17,13,15
chr2	74682512	.	C	T	2123.93	PASS	AC=1;AF=0.575;AN=2;DP=2133;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,61:118:99:1601,0,1482:27,30,26,35
chr2	74687258	.	A	ACACATTT	8084.6	PASS	AC=1;AF=0.553;AN=2;DP=7200;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:155,162:317:99:6343,0,9564:65,90,63,99
chr2	74687550	.	T	C	1909.38	PASS	AC=1;AF=0.553;AN=2;DP=2962;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,77:144:99:2009,0,1732:44,23,48,29
chr2	74689078	.	C	T	1870.59	PASS	AC=1;AF=0.5;AN=2;DP=525;MQ=60;set=variant22-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,72:165:99:1850,0,2633:56,37,43,29
chr2	74690039	.	G	A	1847.92	PASS	AC=1;AF=0.575;AN=2;DP=2843;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,69:133:99:1929,0,1638:30,34,25,44
chr2	74690378	.	C	T	1780.45	PASS	AC=1;AF=0.553;AN=2;DP=2200;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,62:132:99:1575,0,1967:42,28,39,23
chr2	74692647	.	T	C	601.64	PASS	AC=1;AF=0.575;AN=2;DP=912;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:535,0,645:6,18,8,15
chr2	74699778	.	C	A	1552.43	PASS	AC=1;AF=0.553;AN=2;DP=2118;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,54:113:99:1415,0,1722:17,42,23,31
chr2	74710491	.	C	T	2236.63	PASS	AC=1;AF=0.575;AN=2;DP=2612;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,59:111:99:1488,0,1380:28,24,33,26
chr2	74718586	.	T	C	113	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=154;FS=150.253;FractionInformativeReads=0.955;MQ=60;MQRankSum=-1.77;QD=0.73;ReadPosRankSum=-5.015;SOR=5.992;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:128,19:147:99:141,0,4219:13,115,19,0
chr2	74720002	.	C	G	1754.44	PASS	AC=2;AF=0.977;AN=2;DP=3163;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2110,191,0:0,0,38,26
chr2	74721055	.	A	G	526.51	PASS	AC=1;AF=0.575;AN=2;DP=924;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,18:53:99:518,0,940:17,18,5,13
chr2	74725144	.	T	C	7133.06	PASS	AC=2;AF=0.907;AN=2;DP=9194;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,173:173:99:5635,518,0:0,0,100,73
chr2	74730864	.	G	C	1277.09	PASS	AC=1;AF=0.5;AN=2;DP=116;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.509;QD=11.01;ReadPosRankSum=-0.299;SOR=0.699;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,55:116:99:1305,0,1637:31,30,27,28
chr2	74732415	.	T	G	1120.68	PASS	AC=1;AF=0.553;AN=2;DP=1191;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:929,0,1022:19,21,17,18
chr2	74735614	.	T	C	944.28	PASS	AC=1;AF=0.571;AN=2;DP=859;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant27-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:514,0,528:9,11,8,10
chr2	74746322	.	A	T	1805.69	PASS	AC=1;AF=0.575;AN=2;DP=2385;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,56:111:99:1394,0,1347:24,31,23,33
chr2	74755778	.	A	C	861.08	PASS	AC=1;AF=0.548;AN=2;DP=888;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant27-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:612,0,648:13,15,12,11
chr2	74756111	.	G	GA	1320.83	PASS	AC=1;AF=0.548;AN=2;DP=1841;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant27-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,42:88:99:885,0,1034:35,11,26,16
chr2	74756176	.	G	C	2946.62	PASS	AC=1;AF=0.548;AN=2;DP=3829;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant27-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,88:190:99:2254,0,2481:57,45,56,32
chr2	74759723	.	T	C	2131.92	PASS	AC=1;AF=0.5;AN=2;DP=206;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.58;QD=10.35;ReadPosRankSum=-0.61;SOR=0.698;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:120,86:206:99:2160,0,2994:56,64,40,46
chr2	74760206	.	C	T	371.81	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.585;QD=18.59;ReadPosRankSum=1.506;SOR=0.481;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,13:20:99:400,0,205:1,6,3,10
chr2	74761422	.	T	C	5705.38	PASS	AC=1;AF=0.55;AN=2;DP=8288;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:183,196:379:99:5033,0,4331:89,94,92,104
chr2	74781955	.	T	C	2358.53	PASS	AC=1;AF=0.5;AN=2;DP=574;MQ=60;set=variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:100,88:188:99:2032,0,2438:53,47,51,37
chr2	74782688	.	G	GCTCT	3456.77	PASS	AC=1;AF=0.5;AN=2;DP=428;MQ=60;set=variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,62:132:99:2344,0,3122:35,35,31,31
chr2	74782819	.	A	G	762.57	PASS	AC=1;AF=0.5;AN=2;DP=199;MQ=60;set=variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:876,0,863:14,19,18,15
chr2	74786814	.	C	G	1313.03	PASS	AC=1;AF=0.5;AN=2;DP=118;FS=1.477;FractionInformativeReads=1;MQ=60;MQRankSum=-1.558;QD=11.13;ReadPosRankSum=-0.344;SOR=0.871;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,52:118:99:1341,0,1534:32,34,23,29
chr2	74789700	.	A	T	198.41	PASS	AC=1;AF=0.556;AN=2;DP=266;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:306,0,173:3,5,0,8
chr2	74802728	.	C	G	1270.66	PASS	AC=1;AF=0.6;AN=2;DP=343;FractionInformativeReads=1;MQ=60;set=variant3-variant20-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:32,36:68:99:1021,0,836:15,17,19,17
chr2	74803517	.	G	C	2032.64	PASS	AC=1;AF=0.6;AN=2;DP=593;FractionInformativeReads=1;MQ=60;set=variant3-variant20-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1256,0,877:21,18,23,23
chr2	74803763	.	T	C	2355.92	PASS	AC=1;AF=0.6;AN=2;DP=680;FractionInformativeReads=1;set=variant3-variant20-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,72:124:99:1761,0,1327:27,25,37,35
chr2	74867619	.	C	T	124.68	PASS	AC=1;AF=0.5;AN=2;DP=24;FractionInformativeReads=1;MQ=60;set=variant3-variant20-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:123,0,34:0,1,0,3
chr2	74885090	.	T	G	1564.39	PASS	AC=1;AF=0.5;AN=2;DP=579;FractionInformativeReads=1;MQ=60;set=variant3-variant20-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:86,52:138:99:1890,0,4873:32,54,8,44
chr2	74885095	.	G	T	1827.78	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=20.466;FractionInformativeReads=1;MQ=60;MQRankSum=1.504;QD=13.74;ReadPosRankSum=0.917;SOR=2.32;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:84,49:133:99:1856,0,4844:30,54,7,42
chr2	74902590	.	G	A	1353.31	PASS	AC=1;AF=0.5;AN=2;DP=215;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,52:96:99:1382,0,1222:22,22,27,25
chr2	74902872	.	A	G	1963.64	PASS	AC=1;AF=0.55;AN=2;DP=2850;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,44:118:99:1183,0,2017:35,39,14,30
chr2	74907964	.	A	G	557.3	PASS	AC=1;AF=0.55;AN=2;DP=965;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant10-variant13-variant14-variant15-variant18-variant20-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,16:44:99:481,0,726:15,13,4,12
chr2	74908299	.	C	T	921.21	PASS	AC=1;AF=0.529;AN=2;DP=483;FractionInformativeReads=1;MQ=60;set=variant9-variant10-variant13-variant14-variant15-variant18-variant21-variant24-variant26-variant28-variant32-variant34-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:291,0,453:7,10,7,5
chr2	75094983	.	C	T	1231.54	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.709;QD=10.09;ReadPosRankSum=-0.874;SOR=0.678;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,54:122:99:1260,0,1872:25,43,20,34
chr2	75099477	.	A	T	1525.24	PASS	AC=2;AF=0.525;AN=2;DP=1855;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant30-variant31-variant34-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3391,344,0:0,0,66,49
chr2	75101454	.	T	C	1939.5	PASS	AC=2;AF=0.545;AN=2;DP=3479;set=variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant30-variant31-variant34-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3921,356,0:0,0,82,37
chr2	75104570	.	A	G	656.09	PASS	AC=2;AF=0.528;AN=2;DP=567;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant31-variant34-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1441,99,0:0,0,11,22
chr2	75104575	.	G	A	631.41	PASS	AC=2;AF=0.528;AN=2;DP=501;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant14-variant15-variant16-variant18-variant20-variant21-variant23-variant26-variant28-variant31-variant34-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:93:1392,93,0:0,0,10,20
chr2	75105798	.	A	G	1862.74	PASS	AC=2;AF=1;AN=2;DP=5195;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2934,291,0:0,0,47,50
chr2	75107367	.	T	G	3640.08	PASS	AC=1;AF=0.5;AN=2;DP=4593;MQ=60;set=variant11-variant12-variant14-variant15-variant16-variant18-variant21-variant23-variant26-variant28-variant31-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:131,129:260:99:3111,0,3235:66,65,63,66
chr2	75112841	.	C	T	1062.57	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.99;QD=13.98;ReadPosRankSum=-2.908;SOR=0.801;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,41:76:99:1091,0,904:11,24,12,29
chr2	75113572	.	G	A	762.98	PASS	AC=1;AF=0.659;AN=2;DP=5510;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,61:128:99:1514,0,1688:29,38,26,35
chr2	75113657	.	C	T	615	PASS	AC=2;AF=0.609;AN=2;DP=2890;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2678,228,0:0,0,33,43
chr2	75113789	.	C	G	981.05	PASS	AC=1;AF=0.655;AN=2;DP=6602;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,86:156:99:1996,0,1611:36,34,41,45
chr2	75115108	.	A	G	1335.27	PASS	AC=1;AF=0.725;AN=2;DP=2172;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,13:42:99:282,0,786:14,15,8,5
chr2	75116527	.	G	A	1300.07	PASS	AC=1;AF=0.5;AN=2;DP=477;FractionInformativeReads=1;set=variant10-variant13-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:54,50:104:99:1323,0,1573:19,35,17,33
chr2	75116627	.	C	T	169.32	PASS	AC=2;AF=0.695;AN=2;DP=2680;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1437,129,0:0,0,15,28
chr2	75118330	.	T	G	4410.86	PASS	AC=2;AF=0.674;AN=2;DP=14783;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,348:348:99:10669,1040,0:0,0,162,186
chr2	75118620	.	C	A	642.73	PASS	AC=1;AF=0.5;AN=2;DP=167;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,29:62:99:720,0,834:17,16,14,15
chr2	75118737	.	C	T	621.58	PASS	AC=2;AF=0.659;AN=2;DP=2740;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2178,213,0:0,0,34,37
chr2	75118856	.	T	C	476.77	PASS	AC=2;AF=0.667;AN=2;DP=1429;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1133,96,0:0,0,18,14
chr2	75118884	.	G	GA	246.54	PASS	AC=2;AF=0.684;AN=2;DP=1347;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:959,78,0:0,0,15,11
chr2	75118913	.	TAATG	T	451.45	PASS	AC=2;AF=0.684;AN=2;DP=1326;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-filterInvariant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1108,75,0:0,0,12,13
chr2	75120159	.	CT	CTTT,CTT,C	1372.33	PASS	AC=1,1,0;AF=0.4,0.113,0.075;AN=2;DP=7515;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-filterInvariant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-filterInvariant37-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	2/1:139:99:14,7,71,47
chr2	75185566	.	C	T	490.32	PASS	AC=1;AF=0.5;AN=2;DP=123;FS=0;FractionInformativeReads=1;MQ=60;set=variant20-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:642,0,711:17,11,15,10
chr2	75185667	.	C	G	1998.59	PASS	AC=2;AF=0.849;AN=2;DP=3014;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2233,222,0:0,0,40,34
chr2	75185856	.	G	T	1571.93	PASS	AC=1;AF=0.618;AN=2;DP=6365;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:105,75:180:99:1826,0,2839:68,37,51,24
chr2	75187573	.	G	A	2690.39	PASS	AC=2;AF=0.849;AN=2;DP=2738;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1285,113,0:0,0,26,12
chr2	75187793	.	A	T	848.09	PASS	AC=2;AF=0.845;AN=2;DP=1022;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:590,54,0:0,0,5,13
chr2	75196358	.	C	A	530.92	PASS	AC=1;AF=0.5;AN=2;DP=103;FractionInformativeReads=1;MQ=60;set=variant20-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:571,0,888:22,6,16,4
chr2	75276290	.	T	C	165.43	PASS	AC=1;AF=0.5;AN=2;DP=409;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant10-variant13-variant17-variant26-variant32-variant33-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:569,0,711:15,12,16,5
chr2	75281087	.	A	T	286.76	PASS	AC=1;AF=0.5;AN=2;DP=36;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,4:18:74:74,0,354:6,8,2,2
chr2	75425623	.	G	A	221.67	PASS	AC=2;AF=0.655;AN=2;DP=582;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:830,72,0:0,0,16,8
chr2	75425728	.	A	G	560.02	PASS	AC=2;AF=0.652;AN=2;DP=2389;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2298,210,0:0,0,45,25
chr2	75719537	.	T	TAA,TA,TTA,TTAA,TAAA	548.19	PASS	AC=0,1,1,0,0;AF=0.261,0.193,0.205,0.011,0.011;AN=2;DP=4196;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	2/3:69:99:4,5,23,37
chr2	75720664	.	G	A	1982.55	PASS	AC=1;AF=0.575;AN=2;DP=2712;MQ=60;set=variant4-variant7-variant10-variant13-variant16-variant22-variant24-variant25-variant26-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,75:124:99:1989,0,1097:22,27,42,33
chr2	75744918	.	T	C	593.42	PASS	AC=1;AF=0.645;AN=2;DP=2902;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,36:81:99:901,0,1070:25,20,22,14
chr2	75745081	.	T	C	445.98	PASS	AC=1;AF=0.574;AN=2;DP=2531;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,37:75:99:1006,0,988:22,16,19,18
chr2	75787767	.	GC	G	485.66	PASS	AC=2;AF=1;AN=2;DP=997;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1045,96,0:0,0,22,10
chr2	75787861	.	C	T	1031.82	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=1.936;FractionInformativeReads=1;MQ=60;MQRankSum=-1.214;QD=14.13;ReadPosRankSum=0.948;SOR=0.652;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,40:73:99:1060,0,746:18,15,19,21
chr2	75787972	.	G	C	447.81	PASS	AC=1;AF=0.617;AN=2;DP=1412;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,29:48:99:741,0,488:7,12,15,14
chr2	75788287	.	C	T	328.29	PASS	AC=1;AF=0.645;AN=2;DP=637;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:281,0,356:8,4,7,2
chr2	75788500	.	CTT	C,CT	95.69	PASS	AC=0,1;AF=0.314,0.357;AN=2;DP=769;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:6:4:0,1,1,4
chr2	75796950	.	C	T	173.66	PASS	AC=2;AF=0.673;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant10-variant11-variant14-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:132,9,0:0,0,0,3
chr2	75873733	.	T	C	560.53	PASS	AC=1;AF=0.725;AN=2;DP=1146;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:179,0,238:6,1,5,0
chr2	75874015	.	C	G,A	1541.98	PASS	AC=1,0;AF=0.4,0.1;AN=2;DP=524;MQ=60;set=variant13-variant15-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:86:99:20,27,9,30
chr2	75874091	.	G	T	1349.57	PASS	AC=1;AF=0.5;AN=2;DP=327;MQ=60;set=variant13-variant15-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:47,29:76:99:802,0,1342:25,22,13,16
chr2	75874574	.	C	T	352.34	PASS	AC=1;AF=0.5;AN=2;DP=66;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:531,0,529:3,16,5,13
chr2	75881828	.	T	C	1284.44	PASS	AC=1;AF=0.6;AN=2;DP=3986;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:76,64:140:99:1403,0,1760:44,32,35,29
chr2	75882576	.	T	C	805.96	PASS	AC=1;AF=0.6;AN=2;DP=1792;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,34:65:99:931,0,832:18,13,22,12
chr2	75882754	.	A	G	1992.96	PASS	AC=1;AF=0.5;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1326,0,1678:31,24,25,24
chr2	75883007	.	G	GAA,GA	1127.33	PASS	AC=1,0;AF=0.483,0.117;AN=2;DP=3098;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:62:99:14,23,10,15
chr2	75883341	.	G	C	2149.72	PASS	AC=1;AF=0.5;AN=2;DP=359;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:106,87:193:99:1988,0,2574:50,56,41,46
chr2	75883390	.	G	T	2012.81	PASS	AC=1;AF=0.6;AN=2;DP=4091;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:82,63:145:99:1457,0,2042:36,46,29,34
chr2	75883878	.	T	C	6942.97	PASS	AC=1;AF=0.586;AN=2;DP=13081;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:246,227:473:99:5657,0,5910:116,130,107,120
chr2	75884209	.	AT	ATT,A	1508.98	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=556;MQ=60;set=variant10-variant13-variant41-variant43	GT:DP:GQ:SB	0/2:136:99:26,33,27,50
chr2	75884988	.	CT	C	759.16	PASS	AC=1;AF=0.6;AN=2;DP=2024;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:718,0,467:3,18,6,14
chr2	75884999	.	T	A	763.72	PASS	AC=1;AF=0.5;AN=2;DP=88;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:490,0,1393:4,20,5,12
chr2	75890408	.	A	G	671.21	PASS	AC=1;AF=0.6;AN=2;DP=2231;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:561,0,709:8,15,8,12
chr2	75890540	.	T	C	679.01	PASS	AC=1;AF=0.6;AN=2;DP=1793;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:360,0,601:12,8,7,5
chr2	75893257	.	T	C	372.73	PASS	AC=1;AF=0.5;AN=2;DP=44;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:337,0,256:3,7,4,8
chr2	75915035	.	C	T	1533.76	PASS	AC=1;AF=0.6;AN=2;DP=3715;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,49:117:99:1197,0,1515:31,37,21,28
chr2	75919272	.	AATATAT	AAT,AATAT,A	979.76	PASS	AC=1,0,0;AF=0.774,0.065,0.016;AN=2;DP=874;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant20-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:5:85:0,1,1,3
chr2	75919296	.	T	C	961.77	PASS	AC=1;AF=0.9;AN=2;DP=468;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:85:130,0,85:0,1,1,3
chr2	75928300	.	G	T	1018.84	PASS	AC=1;AF=0.6;AN=2;DP=1517;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:581,0,805:20,9,15,10
chr2	75929238	.	C	A	1107.09	PASS	AC=1;AF=0.6;AN=2;DP=2879;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,48:109:99:1440,0,1761:20,41,14,34
chr2	75933830	.	T	A	378.69	PASS	AC=1;AF=0.6;AN=2;DP=998;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant24-variant25-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:377,0,215:2,6,4,9
chr2	75937888	.	G	C	513.29	PASS	AC=1;AF=0.5;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,30:75:99:689,0,1086:25,20,19,11
chr2	76975666	.	G	GT	421.68	PASS	AC=1;AF=0.577;AN=2;DP=356;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant12-variant13-variant22-variant32-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:142,0,289:6,6,4,3
chr2	77744821	.	CA	CAA,C,CAAA	530.12	PASS	AC=1,0,0;AF=0.238,0.429,0.024;AN=2;DP=2517;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:26:99:4,11,5,6
chr2	77745255	.	TAA	TA,T,TAAA	641.91	PASS	AC=1,0,0;AF=0.15,0.363,0.025;AN=2;DP=9981;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant21-variant22-filterInvariant23-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant34-filterInvariant35-filterInvariant36-variant37-variant38-variant39-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:160:99:53,76,15,16
chr2	77748604	.	TA	T	359.49	PASS	AC=1;AF=0.545;AN=2;DP=622;MQ=60;set=variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant23-variant28-variant29-variant31-variant33-variant34-variant36-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:354,0,232:9,2,14,1
chr2	77748963	.	CAAAA	CAAA,CA,CAA,C	55.64	PASS	AC=0,0,0,1;AF=0.269,0.269,0.077,0.038;AN=2;DP=318;FS=0;set=variant-variant3-variant4-variant7-variant11-variant19-variant20-variant21-variant25-variant29-variant33-variant41-variant43	GT:DP:GQ:SB	0/4:11:69:0,4,1,6
chr2	79252759	.	G	T	289.81	PASS	AC=1;AF=0.5;AN=2;DP=52;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:222,0,252:6,6,6,4
chr2	79252950	.	A	G	144.28	PASS	AC=1;AF=0.786;AN=2;DP=1329;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:310,0,222:4,4,7,5
chr2	79253146	.	T	C	3058.99	PASS	AC=1;AF=0.5;AN=2;DP=500;FractionInformativeReads=1;MQ=60;set=variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:119,117:236:99:2887,0,2979:69,50,69,48
chr2	79254261	.	T	C	270.18	PASS	AC=1;AF=0.786;AN=2;DP=4728;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,51:102:99:1428,0,1457:15,36,15,36
chr2	79255325	.	G	C	1210.51	PASS	AC=1;AF=0.609;AN=2;DP=3078;MQ=60;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant27-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,43:81:99:1036,0,872:22,16,20,23
chr2	79255426	.	G	C	963.91	PASS	AC=1;AF=0.786;AN=2;DP=4495;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,36:77:99:980,0,1151:22,19,20,16
chr2	79255629	.	G	T	619.67	PASS	AC=1;AF=0.786;AN=2;DP=2472;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,29:48:99:930,0,519:5,14,9,20
chr2	79312414	.	G	A	3141.16	PASS	AC=2;AF=0.789;AN=2;DP=3641;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2341,222,0:0,0,38,36
chr2	79313815	.	G	T	3395.65	PASS	AC=2;AF=0.788;AN=2;DP=4983;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3891,378,0:0,0,75,51
chr2	79314081	.	T	C	847.32	PASS	AC=1;AF=0.58;AN=2;DP=1584;set=variant-variant2-variant3-variant4-variant6-variant8-variant10-variant11-variant13-variant14-variant17-variant21-variant23-variant24-variant25-variant26-variant29-variant31-variant33-variant35-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,30:52:99:732,0,562:6,16,11,19
chr2	79314094	.	G	T	1098.52	PASS	AC=2;AF=0.788;AN=2;DP=2002;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1229,125,0:0,0,13,29
chr2	79314876	.	C	A	1572.08	PASS	AC=2;AF=0.795;AN=2;DP=2321;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1693,153,0:0,0,16,35
chr2	79347487	.	G	A	266.39	PASS	AC=2;AF=1;AN=2;DP=1031;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:775,69,0:0,0,16,7
chr2	79347603	.	T	C	92.13	PASS	AC=1;AF=0.596;AN=2;DP=1057;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:473,0,577:11,11,9,9
chr2	79347666	.	C	T	183.41	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:455,0,540:10,12,9,11
chr2	79347745	.	T	G	234.38	PASS	AC=1;AF=0.697;AN=2;DP=896;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:552,0,334:5,9,9,8
chr2	79348129	.	GAA	G,GA	1813.01	PASS	AC=0,2;AF=0.068,0.92;AN=2;DP=4834;set=Intersection	GT:DP:GQ:SB	2/2:108:99:2,4,34,68
chr2	79348196	.	G	T	581.9	PASS	AC=1;AF=0.538;AN=2;DP=557;MQ=60;set=variant2-variant5-variant9-variant10-variant13-variant18-variant24-variant34-variant35-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,25:51:99:774,0,809:4,22,4,21
chr2	79350186	.	G	A	1572.11	PASS	AC=1;AF=0.593;AN=2;DP=3656;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,50:131:99:1128,0,2037:34,47,23,27
chr2	79350347	.	A	G	3490.96	PASS	AC=2;AF=1;AN=2;DP=5169;FS=0;MQ=60;MQRankSum=1.347;ReadPosRankSum=1.629;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2775,270,0:0,0,48,42
chr2	79350505	.	C	T	758.98	PASS	AC=1;AF=0.593;AN=2;DP=1703;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,27:49:99:729,0,674:7,15,8,19
chr2	79350576	.	C	T	181.56	PASS	AC=1;AF=0.5;AN=2;DP=41;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:309,0,242:1,7,2,8
chr2	79385033	.	T	C	609.55	PASS	AC=1;AF=0.5;AN=2;DP=334;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant7-variant19-variant20-variant22-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:406,0,740:8,16,7,11
chr2	79422965	.	C	G	1453.13	PASS	AC=1;AF=0.661;AN=2;DP=2073;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant18-variant19-variant20-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,26:49:99:644,0,464:12,11,15,11
chr2	79423062	.	TTTTG	T	232.76	PASS	AC=1;AF=0.5;AN=2;DP=303;MQ=60;set=variant-variant5-variant7-variant13-variant19-variant20-variant24-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:454,0,626:4,8,4,8
chr2	79539869	.	T	C	901.84	PASS	AC=1;AF=0.5;AN=2;DP=469;MQ=60;set=variant18-variant24-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,41:80:99:990,0,863:23,16,20,21
chr2	79539988	.	G	C	893.85	PASS	AC=1;AF=0.529;AN=2;DP=980;MQ=60;set=variant5-variant8-variant15-variant18-variant22-variant23-variant24-variant25-variant27-variant29-variant32-variant34-variant35-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,15:46:99:359,0,752:13,18,6,9
chr2	79600914	.	C	T	238.54	PASS	AC=2;AF=0.843;AN=2;DP=330;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:418,36,0:0,0,8,4
chr2	79600948	.	A	C	63.56	PASS	AC=2;AF=0.846;AN=2;DP=476;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:400,36,0:0,0,8,4
chr2	79601000	.	G	C	75.16	PASS	AC=1;AF=0.825;AN=2;DP=732;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:136,0,218:6,3,3,3
chr2	79601273	.	A	T	51.23	PASS	AC=2;AF=0.829;AN=2;DP=807;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:477,48,0:0,0,8,8
chr2	79750282	.	A	G	757.02	PASS	AC=2;AF=0.595;AN=2;DP=711;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant8-variant11-variant13-variant18-variant20-variant23-variant25-variant26-variant27-variant28-variant29-variant33-variant36-variant37-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:841,69,0:0,0,19,4
chr2	79750543	.	C	T	235.31	PASS	AC=2;AF=0.878;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:267,18,0:0,0,0,6
chr2	79878664	.	A	G	1977.47	PASS	AC=1;AF=0.6;AN=2;DP=1625;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant13-variant14-variant20-variant22-variant24-variant25-variant27-variant30-variant32-variant34-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:863,0,783:20,11,22,9
chr2	79914570	.	C	CT,CTT	369.89	PASS	AC=1,0;AF=0.646,0.037;AN=2;DP=2049;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:47:97:6,3,27,11
chr2	79914884	.	G	T	1163.95	PASS	AC=1;AF=0.545;AN=2;DP=1109;MQ=60;set=variant-variant5-variant8-variant10-variant14-variant18-variant20-variant21-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,49:112:99:1245,0,1580:30,33,22,27
chr2	80085440	.	C	T	602.55	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=1.331;FractionInformativeReads=1;MQ=60;MQRankSum=0.328;QD=14.01;ReadPosRankSum=-0.522;SOR=1.002;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:631,0,595:6,15,5,17
chr2	80101515	.	CA	C,CAA	97.06	PASS	AC=0,1;AF=0.409,0.091;AN=2;DP=443;MQ=60;set=variant2-variant3-variant8-variant16-variant18-variant23-variant24-variant26-variant36-variant39-variant41	GT:DP:GQ:SB	0/2:27:99:6,10,4,7
chr2	80801346	.	T	C	3038.46	PASS	AC=1;AF=0.625;AN=2;DP=3393;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,60:100:99:1599,0,987:22,18,39,21
chr2	80809027	.	C	G	203.53	PASS	AC=2;AF=0.611;AN=2;DP=568;MQ=60;set=variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:402,33,0:0,0,2,9
chr2	80831113	.	C	T	241.42	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.936;QD=17.24;ReadPosRankSum=-0.299;SOR=1.828;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:270,0,232:6,1,7,0
chr2	80831481	.	G	A	876.51	PASS	AC=1;AF=0.586;AN=2;DP=1368;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:613,0,487:8,10,8,15
chr2	80831591	.	G	C	127.43	PASS	AC=2;AF=0.7;AN=2;DP=348;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:317,30,0:0,0,3,7
chr2	80846147	.	C	CT	67.41	PASS	AC=2;AF=0.6;AN=2;DP=918;set=filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-filterInvariant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:3,29:32:19:601,19,0:2,1,18,11
chr2	80875611	.	C	A	6044.82	PASS	AC=1;AF=0.589;AN=2;DP=12380;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:213,216:429:99:5191,0,5443:99,114,96,120
chr2	80875726	.	C	CT	1575.98	PASS	AC=1;AF=0.589;AN=2;DP=3962;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,71:127:99:1860,0,1397:12,44,25,46
chr2	83083845	.	C	T	804.7	PASS	AC=1;AF=0.534;AN=2;DP=1163;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:535,0,501:14,6,15,4
chr2	84650707	.	A	G	6583.48	PASS	AC=2;AF=0.907;AN=2;DP=9380;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,228:229:99:6915,660,0:0,1,102,126
chr2	84676163	.	C	A	920.05	PASS	AC=2;AF=0.907;AN=2;DP=1936;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1118,122,0:0,0,16,25
chr2	84676886	.	TAAAAAAA	TAAAA,TAAA,TAAAAA,TAAAAAA,TA,TAA,T	235.32	PASS	AC=2,0,0,0,0,0,0;AF=0.292,0.361,0.042,0.028,0.014,0.042,0.014;AN=2;DP=853;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:12:24:0,1,5,6
chr2	84755996	.	A	AT,ATT,ATTT	1688.6	PASS	AC=1,1,0;AF=0.709,0.163,0.047;AN=2;DP=2582;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:85:99:1,1,56,27
chr2	84756049	.	G	A	3190.51	PASS	AC=2;AF=0.919;AN=2;DP=4512;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,139:139:99:4162,412,0:0,0,69,70
chr2	84756341	.	T	G	310.27	PASS	AC=2;AF=0.94;AN=2;DP=400;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:702,51,0:0,0,2,15
chr2	84771480	.	G	A	1821.59	PASS	AC=2;AF=0.919;AN=2;DP=2807;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:1925,195,0:0,0,30,35
chr2	84771567	.	C	T	1220.31	PASS	AC=2;AF=0.907;AN=2;DP=1815;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1542,141,0:0,0,14,33
chr2	84800605	.	C	A	2659.02	PASS	AC=2;AF=0.919;AN=2;DP=2446;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1346,129,0:0,0,19,24
chr2	84806553	.	G	A	724.62	PASS	AC=2;AF=0.93;AN=2;DP=538;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,13:14:32:535,32,0:1,0,12,1
chr2	84822715	.	C	T	950.41	PASS	AC=2;AF=0.919;AN=2;DP=1291;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:808,63,0:0,0,19,2
chr2	84831767	.	G	A	233.51	PASS	AC=2;AF=0.921;AN=2;DP=194;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:105,9,0:0,0,0,3
chr2	84834063	.	T	C	3698.27	PASS	AC=2;AF=0.93;AN=2;DP=5262;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3432,336,0:0,0,66,46
chr2	84834237	.	T	C	2248.83	PASS	AC=2;AF=0.895;AN=2;DP=2793;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1950,171,0:0,0,14,43
chr2	84897517	.	A	G	1905	PASS	AC=2;AF=0.93;AN=2;DP=2575;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1388,146,0:0,0,26,23
chr2	84899360	.	G	A	1090.12	PASS	AC=2;AF=0.86;AN=2;DP=1510;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:845,78,0:0,0,18,8
chr2	85108252	.	G	GC	1448.48	PASS	AC=2;AF=1;AN=2;DP=1595;FS=0;MQ=60;MQRankSum=1.238;ReadPosRankSum=1.65;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1250,104,0:0,0,12,23
chr2	85133698	.	AC	ACC,A	1117.98	PASS	AC=0,1;AF=0.333,0.167;AN=2;DP=539;MQ=60;set=variant23-variant39-variant41	GT:DP:GQ:SB	0/2:172:99:35,46,37,54
chr2	85280043	.	G	C	243.95	PASS	AC=1;AF=0.542;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant22-variant24-variant25-variant30-variant35-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:338,0,131:4,1,9,2
chr2	85281853	.	C	G	820.71	PASS	AC=1;AF=0.5;AN=2;DP=253;MQ=60;set=variant3-variant10-variant16-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,19:46:99:543,0,758:15,12,10,9
chr2	85510777	.	A	G	651.79	PASS	AC=2;AF=0.677;AN=2;DP=3046;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2910,273,0:0,0,36,55
chr2	85510965	.	A	G	125.14	PASS	AC=2;AF=0.764;AN=2;DP=717;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,21:23:20:689,20,0:1,1,8,13
chr2	85510982	.	C	T	237.07	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.739;QD=11.29;ReadPosRankSum=0.458;SOR=0.569;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:265,0,334:4,7,4,6
chr2	85532205	.	C	G	320.14	PASS	AC=2;AF=0.779;AN=2;DP=1834;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1080,102,0:0,0,21,13
chr2	85537312	.	G	A	2167.39	PASS	AC=2;AF=0.703;AN=2;DP=8491;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,254:254:99:7531,759,0:0,0,136,118
chr2	85545490	.	T	C	1175.19	PASS	AC=1;AF=0.625;AN=2;DP=3079;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant13-variant14-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,54:111:99:1319,0,1656:25,32,21,33
chr2	85545949	.	CCT	C	1400.27	PASS	AC=1;AF=0.529;AN=2;DP=1197;MQ=60;set=variant3-variant6-variant8-variant11-variant12-variant13-variant15-variant19-variant21-variant22-variant29-variant32-variant35-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:1242,0,1838:17,24,14,19
chr2	85546052	.	A	G	257.37	PASS	AC=2;AF=0.716;AN=2;DP=928;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:826,78,0:0,0,13,13
chr2	85546192	.	C	T	192.67	PASS	AC=2;AF=0.743;AN=2;DP=843;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:561,57,0:0,0,8,11
chr2	85546301	.	CTT	CTTT,CT,C	52.68	PASS	AC=0,2,0;AF=0.25,0.25,0.083;AN=2;DP=77;MQ=60;set=variant7-variant10-filterInvariant36-variant39-variant40-variant41	GT:DP:GQ:SB	2/2:5:5:1,0,1,3
chr2	85546615	.	C	T	199.36	PASS	AC=2;AF=0.731;AN=2;DP=759;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:864,93,0:0,0,17,14
chr2	85546932	.	A	C	444.94	PASS	AC=2;AF=0.731;AN=2;DP=2314;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1924,189,0:0,0,36,27
chr2	85547376	.	C	G	258.19	PASS	AC=2;AF=0.75;AN=2;DP=911;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:661,63,0:0,0,10,11
chr2	85547429	.	G	T	325.48	PASS	AC=2;AF=0.75;AN=2;DP=870;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:669,75,0:0,0,12,13
chr2	85547963	.	C	T	314.9	PASS	AC=2;AF=0.744;AN=2;DP=1973;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1289,128,0:0,0,17,26
chr2	85548068	.	TA	T	358.05	PASS	AC=2;AF=0.731;AN=2;DP=1210;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:724,63,0:0,0,11,10
chr2	85548639	.	A	G	2749.58	PASS	AC=2;AF=0.738;AN=2;DP=6110;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,154:155:99:4790,430,0:1,0,98,56
chr2	85549527	.	T	C	795.81	PASS	AC=2;AF=0.716;AN=2;DP=2068;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1880,171,0:0,0,25,32
chr2	85549547	.	C	T	702.63	PASS	AC=2;AF=0.716;AN=2;DP=1920;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1550,159,0:0,0,27,27
chr2	85549868	.	A	G	997.74	PASS	AC=2;AF=0.738;AN=2;DP=3295;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:3400,267,0:0,0,40,49
chr2	85549874	.	A	G	648.77	PASS	AC=1;AF=0.625;AN=2;DP=2185;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant13-variant14-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,51:86:99:1366,0,886:14,21,24,27
chr2	85551696	.	T	G	56.56	PASS	AC=2;AF=0.716;AN=2;DP=709;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:469,39,0:0,0,9,4
chr2	85551779	.	G	A	456.03	PASS	AC=2;AF=0.716;AN=2;DP=1519;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1149,102,0:0,0,23,11
chr2	85552186	.	C	A	831.48	PASS	AC=2;AF=0.744;AN=2;DP=2603;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1391,141,0:0,0,23,24
chr2	85552261	.	A	G	742.84	PASS	AC=1;AF=0.5;AN=2;DP=484;MQ=60;set=variant3-variant6-variant8-variant11-variant19-variant21-variant32-variant35-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:472,0,279:2,8,8,11
chr2	85553784	.	C	T	3077.57	PASS	AC=2;AF=0.731;AN=2;DP=8130;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:6678,617,0:0,0,107,99
chr2	85554080	.	G	A	3068.47	PASS	AC=2;AF=0.722;AN=2;DP=10489;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,290:290:99:9249,868,0:0,0,162,128
chr2	85555262	.	T	G	2114.62	PASS	AC=2;AF=0.763;AN=2;DP=8467;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,204:204:99:6519,612,0:0,0,114,90
chr2	85555277	.	G	A	2464.08	PASS	AC=2;AF=0.756;AN=2;DP=9184;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,230:230:99:7161,687,0:0,0,134,96
chr2	85555478	.	C	T	1603.56	PASS	AC=2;AF=0.744;AN=2;DP=4872;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3870,361,0:0,0,46,75
chr2	85569294	.	T	C	5167.04	PASS	AC=1;AF=0.55;AN=2;DP=7382;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant19-variant21-variant22-variant30-variant32-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:206,183:389:99:4265,0,4860:111,95,102,81
chr2	85570186	.	G	A	66.86	PASS	AC=1;AF=0.5;AN=2;DP=1303;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-filterInvariant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,6:34:99:162,0,865:20,8,5,1
chr2	85570731	.	A	G	2558.84	PASS	AC=1;AF=0.5;AN=2;DP=1324;FractionInformativeReads=1;set=variant2-variant3-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:229,114:343:99:2396,0,5826:136,93,63,51
chr2	85570942	.	G	C	609.64	PASS	AC=1;AF=0.667;AN=2;DP=2569;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,54:77:99:1778,0,635:3,20,9,45
chr2	85571458	.	C	T	1591.4	PASS	AC=1;AF=0.5;AN=2;DP=616;set=variant2-variant3-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:84,68:152:99:1519,0,2170:32,52,34,34
chr2	85571710	.	A	G	1275.37	PASS	AC=2;AF=0.849;AN=2;DP=4406;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3186,284,0:0,0,68,27
chr2	85573033	.	G	A	2141.17	PASS	AC=2;AF=0.788;AN=2;DP=7891;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,199:199:99:5820,595,0:0,0,92,107
chr2	85573049	.	G	A	1515.49	PASS	AC=1;AF=0.617;AN=2;DP=5495;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant13-variant14-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:97,83:180:99:1924,0,2313:45,52,39,44
chr2	85573403	.	C	A	75	PASS	AC=2;AF=0.788;AN=2;DP=398;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:414,36,0:0,0,4,8
chr2	85576451	.	GTC	G	568.61	PASS	AC=1;AF=0.575;AN=2;DP=489;MQ=60;set=variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant19-variant21-variant22-variant30-variant32-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:348,0,399:7,3,6,3
chr2	85595818	.	C	T	1084.04	PASS	AC=1;AF=0.5;AN=2;DP=729;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant14-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,38:82:99:789,0,1093:21,23,17,21
chr2	85616758	.	T	C	1132.92	PASS	AC=1;AF=0.5;AN=2;DP=1017;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant14-variant15-variant21-variant22-variant26-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,25:49:99:630,0,711:19,5,14,11
chr2	85617676	.	C	T	912.64	PASS	AC=1;AF=0.5;AN=2;DP=116;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.923;QD=7.87;ReadPosRankSum=1.227;SOR=0.71;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:77,39:116:99:941,0,2189:34,43,17,22
chr2	85618135	.	G	A	906.53	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=2.143;FractionInformativeReads=1;MQ=60;MQRankSum=1.631;QD=14.39;ReadPosRankSum=1.012;SOR=1.001;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:935,0,794:12,18,11,22
chr2	85622059	.	T	C	2793	PASS	AC=2;AF=0.797;AN=2;DP=4680;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3029,311,0:0,0,45,59
chr2	85625222	.	T	G	1277.14	PASS	AC=1;AF=0.5;AN=2;DP=2016;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant14-variant15-variant21-variant22-variant23-variant26-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,37:84:99:777,0,1201:24,23,17,20
chr2	85626479	.	G	C	1217.98	PASS	AC=1;AF=0.5;AN=2;DP=2642;MQ=60;set=variant-variant2-variant3-variant14-variant15-variant21-variant22-variant23-variant26-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,64:148:99:1819,0,2622:18,66,16,48
chr2	85626524	.	C	T	738.52	PASS	AC=1;AF=0.5;AN=2;DP=620;MQ=60;set=variant-variant2-variant3-variant14-variant21-variant22-variant26-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,29:66:99:975,0,1201:6,31,3,26
chr2	85628556	.	A	G	482.47	PASS	AC=1;AF=0.5;AN=2;DP=628;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant14-variant21-variant22-variant26-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:22,39:61:99:1298,0,695:15,7,22,17
chr2	85628983	.	C	T	647.67	PASS	AC=1;AF=0.5;AN=2;DP=1313;MQ=60;set=variant-variant2-variant3-variant14-variant21-variant22-variant26-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:92,60:152:99:1336,0,2497:39,53,29,31
chr2	85629330	.	C	A	982.76	PASS	AC=1;AF=0.5;AN=2;DP=400;MQ=60;set=variant2-variant3-variant14-variant22-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,40:67:99:837,0,657:11,16,20,20
chr2	85646084	.	T	C	613.34	PASS	AC=1;AF=0.583;AN=2;DP=263;MQ=60;set=variant2-variant3-variant14-variant22-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:571,0,489:17,5,15,7
chr2	85649592	.	A	G	1686.1	PASS	AC=1;AF=0.583;AN=2;DP=1179;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant14-variant22-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,72:154:99:1681,0,1867:42,40,34,38
chr2	85656661	.	C	T	774.46	PASS	AC=1;AF=0.583;AN=2;DP=514;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant14-variant22-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,48:84:99:1186,0,935:17,19,21,27
chr2	85657418	.	G	GAGCTGTCA	208.36	PASS	AC=1;AF=0.542;AN=2;DP=191;MQ=60;set=variant2-variant3-variant14-variant21-variant22-variant26-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:558,0,818:7,3,9,4
chr2	85658257	.	C	G	200.48	PASS	AC=1;AF=0.673;AN=2;DP=787;MQ=60;set=variant2-variant3-variant4-variant6-filterInvariant7-variant9-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,18:49:99:401,0,774:16,15,9,9
chr2	85660126	.	A	G	1589.81	PASS	AC=1;AF=0.703;AN=2;DP=1992;MQ=60;set=variant-variant2-variant3-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:496,0,807:12,18,13,11
chr2	85769246	.	G	A	6428.72	PASS	AC=2;AF=1;AN=2;DP=8187;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5191,495,0:0,0,81,84
chr2	85776949	.	CA	C,CAA	88.71	PASS	AC=1,0;AF=0.308,0.192;AN=2;DP=898;set=filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant9-filterInvariant18-filterInvariant20-filterInvariant23-filterInvariant24-filterInvariant25-variant27-filterInvariant28-filterInvariant31-filterInvariant41	GT:DP:GQ:SB	0/1:45:99:13,19,4,9
chr2	85781318	.	T	G	1817.45	PASS	AC=2;AF=1;AN=2;DP=4199;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3271,308,0:0,0,54,49
chr2	85788140	.	C	T	1279.15	PASS	AC=1;AF=0.548;AN=2;DP=1328;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant17-variant18-variant20-variant23-variant26-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,27:63:99:782,0,969:12,24,7,20
chr2	85788402	.	AC	A	595.26	PASS	AC=2;AF=0.735;AN=2;DP=657;MQ=60;set=variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant11-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:337,36,0:0,0,8,4
chr2	85788476	.	A	T	1467.4	PASS	AC=1;AF=0.5;AN=2;DP=359;MQ=60;set=variant3-variant18-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,30:65:99:821,0,935:19,16,19,11
chr2	85804540	.	A	G	994.18	PASS	AC=2;AF=1;AN=2;DP=1490;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1363,129,0:0,0,29,14
chr2	85807081	.	AT	A	36.81	PASS	AC=1;AF=0.5;AN=2;DP=145;MQ=60;set=filterInvariant8-variant15-filterInvariant17-filterInvariant29-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:90:90,0,113:0,6,1,4
chr2	85818797	.	G	A	135.53	PASS	AC=1;AF=0.5;AN=2;DP=655;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant28-variant29-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,14:37:99:357,0,713:16,7,9,5
chr2	85818886	.	C	T	324.85	PASS	AC=1;AF=0.5;AN=2;DP=1955;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant28-variant29-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1150,0,1437:31,23,26,21
chr2	85820027	.	A	G	91.72	PASS	AC=1;AF=0.5;AN=2;DP=279;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant19-variant21-variant28-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:278,0,152:6,1,7,3
chr2	85823167	.	TG	T	204.54	PASS	AC=1;AF=0.58;AN=2;DP=808;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:320,0,543:6,13,3,9
chr2	85824084	.	G	C	1082.27	PASS	AC=1;AF=0.62;AN=2;DP=3203;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,50:105:99:1162,0,1485:27,28,23,27
chr2	85826132	.	G	A	629.86	PASS	AC=1;AF=0.62;AN=2;DP=1504;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,22:55:99:633,0,967:21,12,15,7
chr2	85826721	.	G	A	1668.27	PASS	AC=1;AF=0.5;AN=2;DP=2828;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant28-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,73:166:99:1671,0,2239:48,45,37,36
chr2	85828014	.	T	G	832.87	PASS	AC=1;AF=0.62;AN=2;DP=1738;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,31:81:99:738,0,1367:33,17,21,10
chr2	85833906	.	CT	C,CTT	102.32	PASS	AC=1,0;AF=0.45,0.05;AN=2;DP=10567;set=filterInvariant-filterInvariant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:165:99:47,85,6,27
chr2	85834641	.	T	G	416.23	PASS	AC=1;AF=0.5;AN=2;DP=993;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant28-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,37:73:99:876,0,858:18,18,17,20
chr2	85835824	.	CAAAAAAAAAA	CAAAAAAAA,CAAAAAAA,CAAAAAA,C	156.74	PASS	AC=1,0,0,0;AF=0.35,0.15,0.05,0.05;AN=2;DP=99;set=variant4-variant7-variant8-variant11-variant13-variant14-variant16-variant39-variant41-variant44	GT:DP:GQ:SB	0/1:10:13:0,2,7,1
chr2	85848747	.	CT	C	679.49	PASS	AC=2;AF=0.732;AN=2;DP=1578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,36:38:64:829,64,0:1,1,14,22
chr2	85863116	.	GTT	G	306.19	PASS	AC=1;AF=0.5;AN=2;DP=259;MQ=60;set=variant3-variant4-variant5-variant7-variant11-variant13-variant16-variant28-variant30-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:496,0,1143:5,5,10,3
chr2	85863119	.	T	C	309.21	PASS	AC=1;AF=0.5;AN=2;DP=259;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant11-variant13-variant16-variant28-variant30-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:496,0,1143:5,5,10,3
chr2	85863120	.	AAG	A	294.16	PASS	AC=1;AF=0.5;AN=2;DP=270;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant11-variant13-variant16-variant28-variant30-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:496,0,1143:5,5,9,3
chr2	85867895	.	CTT	CT,CTTT,C	57.33	PASS	AC=0,0,1;AF=0.4,0.1,0.1;AN=2;DP=71;set=variant11-variant17-variant29-variant31-variant41	GT:DP:GQ:SB	0/3:13:94:5,3,2,3
chr2	85876224	.	CT	C	979.56	PASS	AC=1;AF=0.62;AN=2;DP=1497;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:557,0,666:9,12,9,9
chr2	85886667	.	G	C	725.17	PASS	AC=1;AF=0.62;AN=2;DP=1739;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant22-variant23-variant28-variant29-variant30-variant33-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,44:72:99:1138,0,671:12,16,21,23
chr2	85890758	.	T	C	1029.97	PASS	AC=1;AF=0.5;AN=2;DP=2036;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant13-variant15-variant16-variant19-variant21-variant28-variant30-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,46:93:99:1165,0,1179:24,23,30,16
chr2	85890771	.	T	G	3719.85	PASS	AC=2;AF=0.943;AN=2;DP=5064;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,103:103:99:3824,309,0:0,0,52,51
chr2	85893616	.	CTGTG	CTG,CTGTGTG,C	341.26	PASS	AC=0,1,0;AF=0.446,0.203,0.041;AN=2;DP=1086;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:31:99:6,2,21,2
chr2	85893741	.	G	A	4955.47	PASS	AC=1;AF=0.657;AN=2;DP=6524;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,89:164:99:1986,0,1775:39,36,52,37
chr2	85894568	.	TC	T	128.73	PASS	AC=2;AF=0.545;AN=2;DP=133;MQ=60;set=variant3-variant4-variant5-variant10-variant11-variant16-variant28-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:464,39,0:0,0,8,5
chr2	85895704	.	C	T	316.63	PASS	AC=2;AF=0.533;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant7-variant10-variant11-variant14-variant15-variant16-variant28-variant30-variant31-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:342,27,0:0,0,6,3
chr2	85921939	.	G	C	676.47	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=6.133;FractionInformativeReads=1;MQ=60;MQRankSum=0.13;QD=13.81;ReadPosRankSum=0.17;SOR=0.206;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,25:49:99:705,0,750:17,7,13,12
chr2	85921992	.	T	C	1938.38	PASS	AC=2;AF=0.718;AN=2;DP=3428;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2584,240,0:0,0,47,33
chr2	86010678	.	T	C	80.74	PASS	AC=1;AF=0.7;AN=2;DP=241;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant10-variant11-variant12-variant14-variant15-variant19-variant21-variant23-variant24-variant27-variant28-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:64:64,0,164:4,3,1,2
chr2	86010847	.	G	T	327.3	PASS	AC=1;AF=0.658;AN=2;DP=289;MQ=60;set=variant3-variant4-variant6-variant11-variant12-variant14-variant15-variant22-variant24-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:159,0,104:1,3,4,3
chr2	86014345	.	G	A	3474.55	PASS	AC=1;AF=0.591;AN=2;DP=5334;MQ=60;set=variant3-variant4-variant6-variant7-variant11-variant13-variant14-variant15-variant22-variant24-variant26-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,129:264:99:3362,0,3311:66,69,60,69
chr2	86014780	.	A	G	413.93	PASS	AC=1;AF=0.595;AN=2;DP=1240;MQ=60;set=variant3-variant4-variant6-variant7-variant11-variant13-variant14-variant15-variant22-variant24-variant26-variant31-variant32-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,38:73:99:942,0,854:15,20,16,22
chr2	86015096	.	G	A	938.94	PASS	AC=1;AF=0.63;AN=2;DP=1308;MQ=60;set=variant3-variant4-variant6-variant7-variant11-variant13-variant14-variant15-variant18-variant22-variant24-variant26-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,31:56:99:842,0,658:8,17,15,16
chr2	86248309	.	T	C	824.71	PASS	AC=2;AF=0.788;AN=2;DP=3041;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2416,213,0:0,0,32,39
chr2	86251148	.	A	G	414.39	PASS	AC=2;AF=0.571;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant-variant29-variant32-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:851,84,0:0,0,17,11
chr2	86251951	.	T	C	40.47	PASS	AC=2;AF=0.571;AN=2;DP=208;FractionInformativeReads=1;MQ=60;set=variant-variant29-variant32-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:868,87,0:0,0,12,17
chr2	86253581	.	T	C	2392.18	PASS	AC=2;AF=0.788;AN=2;DP=8986;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,220:220:99:6564,659,0:0,0,104,116
chr2	86258708	.	G	A	1776.1	PASS	AC=1;AF=0.5;AN=2;DP=150;FS=2.949;FractionInformativeReads=1;MQ=60;MQRankSum=1.315;QD=11.84;ReadPosRankSum=-0.547;SOR=0.968;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:78,72:150:99:1804,0,1931:34,44,27,45
chr2	86259443	.	C	T	710.99	PASS	AC=2;AF=0.737;AN=2;DP=4647;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4074,441,0:0,0,72,76
chr2	86269163	.	C	T	632.66	PASS	AC=2;AF=0.667;AN=2;DP=168;FractionInformativeReads=1;MQ=60;set=variant-variant32-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2028,189,0:0,0,22,41
chr2	86279927	.	G	A	539.21	PASS	AC=1;AF=0.5;AN=2;DP=183;FractionInformativeReads=1;MQ=60;set=variant-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:939,0,922:24,16,24,15
chr2	86304932	.	GCGCACACACACACACACA	GCACACACACACACA,GCA,GCACACA,GCACACACA,GCACA,GCACACACACACA,G	479.58	PASS	AC=1,0,0,0,0,0,0;AF=0.033,0.25,0.483,0.067,0.033,0.033,0.017;AN=2;DP=312;set=variant-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant41-variant43	GT:DP:GQ:SB	0/1:16:99:5,1,10,0
chr2	86304938	.	A	G	99.7	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=0.95;MQ=59.54;MQRankSum=1.713;QD=4.98;ReadPosRankSum=0.046;SOR=0.287;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,5:19:99:128,0,401:12,2,4,1
chr2	86335249	.	TAA	TA,T,TAAA	90.17	PASS	AC=1,0,0;AF=0.46,0.02,0.02;AN=2;DP=493;set=variant2-filterInvariant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant15-filterInvariant17-variant18-variant20-variant24-variant26-variant30-variant31-variant32-filterInvariant34-variant37-variant38-variant41-variant42-variant43	GT:DP:GQ:SB	0/1:16:79:9,0,6,1
chr2	86357960	.	AT	A,ATT	125.84	PASS	AC=1,0;AF=0.441,0.088;AN=2;DP=335;MQ=60;set=variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant17-variant21-variant22-variant28-variant34-variant35-variant36-variant40-variant41	GT:DP:GQ:SB	0/1:17:99:3,7,2,5
chr2	86358423	.	A	G	104.7	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.736;QD=17.45;ReadPosRankSum=0.736;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:28:133,0,28:0,1,1,4
chr2	86365799	.	C	CA	280.64	PASS	AC=1;AF=0.512;AN=2;DP=4968;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,78:96:99:1688,0,145:9,9,43,35
chr2	86367350	.	CAAA	CA,CAA,C	2350.58	PASS	AC=0,1,0;AF=0.337,0.244,0.058;AN=2;DP=7722;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:139:99:35,39,48,17
chr2	86437980	.	CAG	C	3761.49	PASS	AC=1;AF=0.5;AN=2;DP=250;FS=0;FractionInformativeReads=0.992;MQ=60;MQRankSum=1.24;QD=15.05;ReadPosRankSum=-0.106;SOR=0.67;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:147,101:248:99:3799,0,6102:78,69,53,48
chr2	86438146	.	A	G	1415.67	PASS	AC=2;AF=0.732;AN=2;DP=5188;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,113:114:99:3751,331,0:1,0,51,62
chr2	86441705	.	C	G	4984.76	PASS	AC=1;AF=0.5;AN=2;DP=505;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=3.827;QD=9.87;ReadPosRankSum=0.132;SOR=0.684;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:295,210:505:99:5013,0,7703:165,130,117,93
chr2	86442146	.	CTTTT	CTTT,CT,C,CTT,CTTTTTTTTTTTTTTTTTT,CTTTTTTT	752.75	PASS	AC=0,0,0,1,0,0;AF=0.097,0.226,0.032,0.177,0.016,0.016;AN=2;DP=3419;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant15-variant16-variant18-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/4:67:99:21,15,3,28
chr2	86442170	.	G	T	257.3	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=285;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:82,15:97:99:133,0,3084:14,68,15,0
chr2	86442172	.	A	T	245.26	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=288;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:81,15:96:99:133,0,3083:16,65,15,0
chr2	86564667	.	G	GCGGCT	1042.32	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=0;FractionInformativeReads=0.914;MQ=60;MQRankSum=1.898;QD=17.97;ReadPosRankSum=-1.203;SOR=0.622;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,28:53:99:1080,0,1529:12,13,14,14
chr2	86565371	.	A	G	535.22	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.663;QD=11.15;ReadPosRankSum=0.763;SOR=0.836;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:563,0,675:8,20,5,15
chr2	86668341	.	T	C	1154.34	PASS	AC=1;AF=0.5;AN=2;DP=72;FS=0.897;FractionInformativeReads=1;MQ=60;MQRankSum=-1.989;QD=16.03;ReadPosRankSum=0.07;SOR=0.673;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,45:72:99:1183,0,611:13,14,23,22
chr2	86683539	.	ATT	A,AT,ATTT	115.15	PASS	AC=0,0,1;AF=0.025,0.125,0.4;AN=2;DP=261;set=variant2-variant3-variant4-variant7-variant8-variant10-variant13-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant33-variant34-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	0/3:10:2:2,0,5,3
chr2	86683642	.	A	G	280.08	PASS	AC=2;AF=0.756;AN=2;DP=1521;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:998,93,0:0,0,13,18
chr2	86683709	.	T	G	299	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=1.536;FractionInformativeReads=1;MQ=60;MQRankSum=-0.022;QD=10.31;ReadPosRankSum=-0.066;SOR=1.27;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:327,0,341:7,9,4,9
chr2	86683901	.	G	C	712.62	PASS	AC=1;AF=0.5;AN=2;DP=691;MQ=60;set=variant-variant7-variant8-variant9-variant11-variant16-variant23-variant26-variant28-variant35-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,23:60:99:443,0,853:22,15,14,9
chr2	86691250	.	G	A	1304.11	PASS	AC=2;AF=0.756;AN=2;DP=4256;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:2963,330,0:0,0,54,57
chr2	86693826	.	T	C	2128.67	PASS	AC=1;AF=0.5;AN=2;DP=2491;MQ=60;set=variant-variant7-variant8-variant9-variant11-variant16-variant23-variant26-variant28-variant35-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:89,78:167:99:2001,0,2122:44,45,42,36
chr2	86707448	.	C	T	427.04	PASS	AC=1;AF=0.5;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant-variant11-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,35:87:99:813,0,1350:25,27,16,19
chr2	86707504	.	T	C	437.79	PASS	AC=2;AF=0.768;AN=2;DP=3368;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2523,252,0:0,0,37,47
chr2	86712731	.	G	C	225.37	PASS	AC=2;AF=0.536;AN=2;DP=303;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant8-variant9-variant11-variant16-variant23-variant26-variant28-variant35-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:581,45,0:0,0,13,2
chr2	86712820	.	A	T	1110.28	PASS	AC=2;AF=0.536;AN=2;DP=1237;MQ=60;set=variant-variant7-variant8-variant9-variant11-variant16-variant23-variant26-variant28-variant35-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2399,219,0:0,0,44,29
chr2	86717002	.	CTG	C	558.95	PASS	AC=1;AF=0.5;AN=2;DP=409;MQ=60;set=variant-variant7-variant8-variant9-variant11-variant16-variant23-variant26-variant28-variant35-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:455,0,739:4,15,2,11
chr2	86733287	.	C	T	208.69	PASS	AC=2;AF=0.536;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant8-variant9-variant11-variant16-variant23-variant26-variant28-variant35-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1729,135,0:0,0,7,38
chr2	86756209	.	C	G	658.38	PASS	AC=2;AF=0.756;AN=2;DP=2039;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1445,126,0:0,0,32,10
chr2	86756381	.	T	G	2301.12	PASS	AC=2;AF=0.536;AN=2;DP=2638;MQ=60;set=variant-variant7-variant8-variant9-variant11-variant16-variant23-variant26-variant28-variant35-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,190:190:99:5897,569,0:0,0,91,99
chr2	86790525	.	AG	A	2022.17	PASS	AC=2;AF=0.538;AN=2;DP=2054;MQ=60;set=variant-variant7-variant8-variant9-variant16-variant23-variant26-variant28-variant35-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,178:179:99:6617,501,0:0,1,80,98
chr2	86790716	.	C	A	254.95	PASS	AC=2;AF=0.538;AN=2;DP=383;MQ=60;set=variant-variant7-variant8-variant9-variant16-variant23-variant26-variant28-variant35-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1175,99,0:0,0,8,25
chr2	86832394	.	T	C	929.68	PASS	AC=1;AF=0.5;AN=2;DP=100;FS=1.626;FractionInformativeReads=1;MQ=60;MQRankSum=-1.323;QD=9.3;ReadPosRankSum=-1.68;SOR=0.874;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,42:100:99:958,0,1572:32,26,25,17
chr2	86839471	.	TATA	T	574.43	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=8.774;FractionInformativeReads=0.947;MQ=60;MQRankSum=0.43;QD=15.12;ReadPosRankSum=1.321;SOR=2.564;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:612,0,865:8,12,2,14
chr2	86839530	.	C	A	178.4	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.27;QD=11.15;ReadPosRankSum=-0.423;SOR=0.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:207,0,301:1,8,1,6
chr2	86850022	.	T	C	808.4	PASS	AC=2;AF=0.764;AN=2;DP=4875;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:3935,384,0:0,0,63,65
chr2	86947783	.	C	T	4365.68	PASS	AC=1;AF=0.793;AN=2;DP=6719;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,70:165:99:1472,0,2520:65,30,41,29
chr2	86978895	.	G	T	196.77	PASS	AC=1;AF=0.771;AN=2;DP=232;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:73:162,0,73:2,0,3,1
chr2	86979093	.	G	A	1488.09	PASS	AC=1;AF=0.75;AN=2;DP=2422;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,29:81:99:605,0,1203:27,25,13,16
chr2	86992337	.	T	TAA	3273.38	PASS	AC=1;AF=0.744;AN=2;DP=2772;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,24:55:99:907,0,1301:10,21,7,17
chr2	86998659	.	CTT	CT,CTTT,C	758.29	PASS	AC=1,0,0;AF=0.488,0.024,0.012;AN=2;DP=2027;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:60:99:18,8,22,12
chr2	87002229	.	C	T	1665.54	PASS	AC=1;AF=0.744;AN=2;DP=3339;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,44:90:99:1116,0,1211:18,28,17,27
chr2	87002706	.	G	A	529.46	PASS	AC=1;AF=0.75;AN=2;DP=1151;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,20:33:99:574,0,208:6,7,8,12
chr2	87003028	.	C	T	1890.7	PASS	AC=1;AF=0.744;AN=2;DP=2549;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,21:58:99:700,0,1200:26,11,15,6
chr2	87003197	.	C	G	13854.3	PASS	AC=1;AF=0.744;AN=2;DP=15131;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:209,191:400:99:4784,0,5384:117,92,107,84
chr2	87015633	.	T	TGA	1265.36	PASS	AC=2;AF=0.81;AN=2;DP=2230;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2210,150,0:0,0,34,16
chr2	87034776	.	G	T	1135.39	PASS	AC=2;AF=0.6;AN=2;DP=548;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant17-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2718,271,0:0,0,42,49
chr2	87035484	.	A	G	387.3	PASS	AC=2;AF=0.6;AN=2;DP=149;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant17-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:915,87,0:0,0,13,16
chr2	87042866	.	T	A	1027.3	PASS	AC=2;AF=0.583;AN=2;DP=391;MQ=60;set=variant5-variant11-variant17-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1844,164,0:0,0,23,32
chr2	87043069	.	T	C	195.93	PASS	AC=2;AF=0.583;AN=2;DP=98;MQ=60;set=variant5-variant11-variant17-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:555,39,0:0,0,4,9
chr2	87048702	.	T	G	526.1	PASS	AC=2;AF=0.932;AN=2;DP=1550;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:821,75,0:0,0,17,8
chr2	87048945	.	C	T	1058.78	PASS	AC=2;AF=0.6;AN=2;DP=257;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant17-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1436,147,0:0,0,19,30
chr2	87069379	.	G	A	567.37	PASS	AC=2;AF=0.716;AN=2;DP=898;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:961,95,0:0,0,12,20
chr2	87069431	.	C	T	481.22	PASS	AC=2;AF=0.716;AN=2;DP=978;set=filterInvariant-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant10-variant11-filterInvariant12-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant21-filterInvariant22-variant23-filterInvariant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-filterInvariant33-filterInvariant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1121,111,0:0,0,16,21
chr2	87073743	.	A	G	140.45	PASS	AC=2;AF=0.716;AN=2;DP=1246;set=variant-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:662,54,0:0,0,11,7
chr2	87074048	.	GTATT	GTT,G	160.29	PASS	AC=0,2;AF=0.5,0.5;AN=2;DP=17;FS=0;set=variant6-variant15-variant17-variant41	GT:DP:GQ:SB	2/2:3:9:0,0,0,3
chr2	87074054	.	T	C	103.57	PASS	AC=2;AF=1;AN=2;DP=6;FS=0;FractionInformativeReads=1;SOR=2.833;set=variant17-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:118,9,0:0,0,0,3
chr2	87085598	.	T	C	135.83	PASS	AC=2;AF=0.675;AN=2;DP=659;set=variant-filterInvariant7-variant8-variant11-variant12-variant15-variant16-variant17-variant19-variant23-variant25-variant28-filterInvariant29-filterInvariant30-variant31-filterInvariant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:648,51,0:0,0,0,17
chr2	87085641	.	G	A	75.04	PASS	AC=2;AF=0.929;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQRankSum=-3.162;ReadPosRankSum=1.102;set=variant16-variant17-filterInvariant28-variant31-variant38-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,0,4
chr2	87100186	.	A	G	88.71	PASS	AC=2;AF=0.591;AN=2;DP=98;FractionInformativeReads=1;set=variant6-variant11-variant17-variant21-variant28-variant29-variant31-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:361,27,0:0,0,8,1
chr2	87105775	.	C	T	246.09	PASS	AC=2;AF=0.636;AN=2;DP=119;FractionInformativeReads=1;set=variant6-variant11-variant21-variant28-variant29-variant30-variant31-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:244,21,0:0,0,4,3
chr2	87105810	.	A	G	64.23	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=38.95;MQRankSum=-0.956;QD=8.03;ReadPosRankSum=-0.322;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:92:92,0,185:3,2,2,1
chr2	87105886	.	T	G	529.79	PASS	AC=2;AF=0.583;AN=2;DP=337;FractionInformativeReads=1;set=variant6-variant11-variant17-variant21-variant28-variant29-variant30-variant31-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1199,101,0:0,0,28,6
chr2	87106108	.	T	C	383.57	PASS	AC=2;AF=0.583;AN=2;DP=369;FractionInformativeReads=1;set=variant6-variant11-variant17-variant21-variant28-variant29-variant30-variant31-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1457,144,0:0,0,12,36
chr2	87114864	.	T	G	269.78	PASS	AC=2;AF=0.583;AN=2;DP=226;FractionInformativeReads=1;set=variant6-variant11-variant17-variant21-variant28-variant29-variant30-variant31-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:880,69,0:0,0,21,2
chr2	87140900	.	C	T	174.08	PASS	AC=1;AF=0.5;AN=2;DP=154;FractionInformativeReads=1;set=variant2-variant11-variant22-variant26-filterInvariant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:162,0,330:7,6,4,3
chr2	87140955	.	A	G	408.9	PASS	AC=1;AF=0.5;AN=2;DP=302;FractionInformativeReads=1;set=variant2-variant11-variant22-variant26-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,21:45:99:486,0,472:13,11,12,9
chr2	87141091	.	T	C	323.77	PASS	AC=1;AF=0.667;AN=2;DP=174;set=variant6-filterInvariant17-variant30-filterInvariant31-filterInvariant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:150,0,154:2,4,0,5
chr2	87141104	.	GC	G	167.55	PASS	AC=1;AF=0.6;AN=2;DP=97;set=variant2-filterInvariant22-filterInvariant26-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:90:108,0,90:0,2,0,3
chr2	87141108	.	GGCGGC	G	167.46	PASS	AC=1;AF=0.5;AN=2;DP=87;FractionInformativeReads=1;set=variant2-variant22-filterInvariant26-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:90:108,0,90:0,1,0,3
chr2	87169455	.	ACGGCCTCGACCTGGCCGGGCGG	A	503.39	PASS	AC=1;AF=0.658;AN=2;DP=1685;set=variant2-variant4-variant6-variant7-variant11-variant17-variant21-variant22-variant23-variant25-variant27-variant28-variant30-variant32-variant33-variant37-variant39-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,14:67:99:216,0,1239:20,33,4,10
chr2	87169469	.	GCCGGGCGGCGGC	G	1054.24	PASS	AC=1;AF=0.5;AN=2;DP=198;FS=0;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,53:87:99:1185,0,774:13,21,20,33
chr2	87169483	.	TCGACCTGGCC	T	1054.24	PASS	AC=1;AF=0.5;AN=2;DP=187;FS=0;set=variant11-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,53:87:99:1185,0,774:13,21,20,33
chr2	87355912	.	C	T	40.02	PASS	AC=1;AF=0.5;AN=2;DP=2086;set=filterInvariant-filterInvariant7-variant9-filterInvariant11-filterInvariant13-filterInvariant15-filterInvariant18-variant19-variant22-variant27-variant28-variant30-filterInvariant31-variant32-variant33-filterInvariant34-variant35-filterInvariant37-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,13:71:99:157,0,1348:31,27,8,5
chr2	87356024	.	C	A	57.33	PASS	AC=1;AF=0.5;AN=2;DP=1995;FractionInformativeReads=1;set=filterInvariant-variant2-filterInvariant3-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant13-variant14-filterInvariant15-variant16-variant18-variant19-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,11:43:99:189,0,832:12,20,4,7
chr2	87359129	.	G	A	43.27	PASS	AC=2;AF=0.8;AN=2;DP=49;FS=0;FractionInformativeReads=1;set=variant-filterInvariant5-variant8-filterInvariant11-variant13-variant15-variant17-variant31-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:156,15,0:0,0,5,0
chr2	87371260	.	T	C	455.82	PASS	AC=2;AF=0.545;AN=2;DP=1510;set=variant-variant2-variant5-variant6-variant7-variant8-variant10-filterInvariant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:764,84,0:0,0,12,16
chr2	87371339	.	C	T	153.94	PASS	AC=2;AF=0.58;AN=2;DP=253;FS=0;FractionInformativeReads=1;set=variant-variant2-filterInvariant5-variant7-variant8-variant13-variant14-filterInvariant15-variant17-filterInvariant18-filterInvariant19-variant21-variant25-filterInvariant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:228,21,0:0,0,1,6
chr2	87373587	.	G	A,T	196.83	PASS	AC=0,1;AF=0.2,0.3;AN=2;DP=129;FractionInformativeReads=1;set=variant7-variant11-variant33-variant41-variant42	GT:DP:GQ:SB	0/2:28:99:9,1,12,6
chr2	87376944	.	G	A	358.27	PASS	AC=2;AF=0.569;AN=2;DP=1558;set=variant-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant35-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1799,171,0:0,0,33,24
chr2	87565743	.	A	C	1120.25	PASS	AC=1;AF=0.657;AN=2;DP=1717;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,16:66:99:362,0,1307:27,23,3,13
chr2	87566063	.	C	T	546.6	DRAGENHardSNP	AC=1;AF=0.655;AN=2;DP=489;FS=0;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:146,0,229:10,0,8,0
chr2	87566297	.	T	TA	389.96	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=0;FractionInformativeReads=0.711;MQ=45.5;MQRankSum=-0.952;QD=10.26;ReadPosRankSum=-0.643;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,18:27:99:427,0,172:2,7,4,14
chr2	87616737	.	T	C	57.73	DRAGENHardSNP	AC=1;AF=0.767;AN=2;DP=473;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:1,8:9:3:198,0,3:0,1,1,7
chr2	88289368	.	G	A	423.77	PASS	AC=1;AF=0.932;AN=2;DP=771;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:250,0,481:8,9,6,6
chr2	88326821	.	T	C	1571.3	PASS	AC=1;AF=0.559;AN=2;DP=866;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant7-variant8-variant11-variant12-variant16-variant18-variant19-variant22-variant24-variant25-variant30-variant32-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:746,0,758:18,5,20,2
chr2	88328208	.	G	A	109.41	PASS	AC=1;AF=0.756;AN=2;DP=589;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:251,0,183:0,5,0,7
chr2	88367339	.	G	A	448.09	PASS	AC=1;AF=0.5;AN=2;DP=107;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:476,0,764:16,11,12,10
chr2	88367812	.	G	T	488.05	PASS	AC=1;AF=0.5;AN=2;DP=121;FractionInformativeReads=1;MQ=60;set=variant-variant9-variant12-variant18-variant29-variant36-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:274,0,226:1,6,1,8
chr2	88382086	.	C	T	1154.06	PASS	AC=1;AF=0.5;AN=2;DP=105;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.216;QD=10.99;ReadPosRankSum=-1.043;SOR=0.706;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,50:105:99:1182,0,1360:35,20,32,18
chr2	88396348	.	G	A	257.61	PASS	AC=1;AF=0.577;AN=2;DP=266;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant13-variant17-variant26-variant27-variant30-variant33-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:509,0,522:1,7,3,10
chr2	88396358	.	C	T	253.66	PASS	AC=1;AF=0.577;AN=2;DP=215;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant13-variant17-variant26-variant27-variant30-variant33-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:441,0,494:1,6,2,8
chr2	88402748	.	G	A	488.11	PASS	AC=1;AF=0.571;AN=2;DP=467;MQ=60;set=variant-variant2-variant8-variant13-variant17-variant26-variant27-variant30-variant33-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:365,0,584:12,7,6,8
chr2	88406104	.	A	G	1073.41	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=0.775;FractionInformativeReads=1;MQ=60;MQRankSum=-1.448;QD=10.42;ReadPosRankSum=-0.157;SOR=0.837;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:60,43:103:99:1102,0,1588:23,37,15,28
chr2	88408172	.	A	G	265.56	PASS	AC=1;AF=0.756;AN=2;DP=1158;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:188,0,424:6,10,1,6
chr2	88409717	.	T	TGA	766	PASS	AC=1;AF=0.5;AN=2;DP=270;set=variant5-variant15-variant19-variant29-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:457,0,272:7,4,9,5
chr2	88409719	.	A	AGAGT,AGTGT,AGAGTGTGTGT,AGAGTGTGTGTGT,AGAGTGTGT,AGT,AGTGTGT,AGAGTGTGTGTGTGT	887.92	PASS	AC=0,1,0,0,0,0,0,0;AF=0.131,0.214,0.298,0.095,0.071,0.012,0.024,0.012;AN=2;DP=1293;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:27:99:13,8,3,3
chr2	88409753	.	T	TGTGTGTGTGG	1062.92	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=4.933;FractionInformativeReads=0.976;MQ=59.65;MQRankSum=-0.371;QD=25.31;ReadPosRankSum=-1.086;SOR=0.213;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,27:41:99:1100,0,472:10,4,14,13
chr2	88410102	.	C	G	560.39	PASS	AC=1;AF=0.756;AN=2;DP=2456;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,27:63:99:749,0,959:15,21,10,17
chr2	88410168	.	A	G	726.61	PASS	AC=1;AF=0.756;AN=2;DP=1905;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,19:47:99:470,0,732:13,15,11,8
chr2	88410731	.	A	G	2004.28	PASS	AC=1;AF=0.756;AN=2;DP=4981;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,73:129:99:1905,0,1392:32,24,46,27
chr2	88410994	.	A	G	893.33	PASS	AC=1;AF=0.559;AN=2;DP=1048;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,40:71:99:1129,0,874:11,20,12,28
chr2	88411357	.	G	A	610.98	PASS	AC=1;AF=0.579;AN=2;DP=1236;MQ=60;set=variant-variant2-variant3-variant8-variant9-variant10-variant11-variant13-variant14-variant20-variant26-variant27-variant30-variant32-variant33-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:937,0,988:18,22,20,19
chr2	88411605	.	A	T	744.8	PASS	AC=1;AF=0.559;AN=2;DP=1428;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,35:84:99:785,0,1235:29,20,19,16
chr2	88411793	.	C	A	1098.72	PASS	AC=1;AF=0.756;AN=2;DP=2625;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,27:60:99:679,0,888:12,21,16,11
chr2	88411904	.	C	T	876.96	PASS	AC=1;AF=0.559;AN=2;DP=1232;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,41:75:99:1117,0,986:22,12,26,15
chr2	88412039	.	G	A	1727.39	PASS	AC=1;AF=0.559;AN=2;DP=2672;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,68:132:99:1748,0,1556:33,31,33,35
chr2	88412339	.	G	A	722.75	PASS	AC=1;AF=0.559;AN=2;DP=1152;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant12-variant15-variant16-variant18-variant19-variant25-variant29-variant37-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,29:73:99:743,0,1125:23,21,14,15
chr2	88423374	.	T	C	998.06	PASS	AC=2;AF=1;AN=2;DP=1575;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1185,123,0:0,0,21,20
chr2	88423510	.	A	G	1632.47	PASS	AC=1;AF=0.571;AN=2;DP=1126;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant11-variant12-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant31-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,16:37:99:373,0,533:9,12,9,7
chr2	88423621	.	C	T	1188.92	PASS	AC=2;AF=0.989;AN=2;DP=2123;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1534,137,0:0,0,28,18
chr2	88424066	.	T	C	4312.85	PASS	AC=1;AF=0.571;AN=2;DP=3027;MQ=60;set=variant2-variant3-variant4-variant6-variant8-variant11-variant12-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant31-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,56:148:99:1389,0,2260:46,46,31,25
chr2	88425983	.	C	A	666.44	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.397;QD=15.15;ReadPosRankSum=-0.645;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:695,0,746:2,20,2,20
chr2	88469770	.	G	C	807.73	PASS	AC=2;AF=0.854;AN=2;DP=2589;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1645,171,0:0,0,24,33
chr2	88469863	.	G	C	2362.3	PASS	AC=2;AF=0.849;AN=2;DP=4174;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2031,165,0:0,0,8,47
chr2	88469933	.	TCGCGCCCCGCGCCC	T,TCGCGCCCCGCGCCCCGCGCCCCGCGCCCCGCGCCC,TCGCGCCCCGCGCCCCGCGCCC,TCGCGCCC	738.45	PASS	AC=0,0,2,0;AF=0.571,0.012,0.214,0.024;AN=2;DP=3109;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	3/3:3:8:0,0,2,1
chr2	88470966	.	G	T	433.04	PASS	AC=1;AF=0.5;AN=2;DP=93;MQ=60;set=variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,30:48:99:746,0,428:8,10,14,16
chr2	88471894	.	G	T	437.53	PASS	AC=1;AF=0.583;AN=2;DP=756;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant13-variant15-variant21-variant23-variant26-variant31-variant32-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:358,0,613:12,11,7,8
chr2	88472141	.	G	A	399.71	PASS	AC=1;AF=0.588;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant13-variant15-variant21-variant23-variant26-variant31-variant32-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:99:120,0,562:9,7,4,2
chr2	88472280	.	C	T	1217.1	PASS	AC=2;AF=0.943;AN=2;DP=1918;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1544,147,0:0,0,24,25
chr2	88472791	.	G	A	1459.83	PASS	AC=2;AF=0.943;AN=2;DP=2222;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1543,141,0:0,0,29,18
chr2	88472925	.	A	G	752.09	PASS	AC=1;AF=0.583;AN=2;DP=1456;MQ=60;set=variant5-variant9-variant10-variant13-variant15-variant21-variant23-variant26-variant31-variant32-variant34-variant35-variant36-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:665,0,926:16,20,16,13
chr2	88474370	.	A	G	3157.66	PASS	AC=2;AF=0.943;AN=2;DP=4675;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3527,344,0:0,0,54,61
chr2	88478341	.	C	A	1918.07	PASS	AC=1;AF=0.5;AN=2;DP=179;FS=1.177;FractionInformativeReads=1;MQ=60;MQRankSum=1.289;QD=10.72;ReadPosRankSum=1.488;SOR=0.583;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:96,83:179:99:1946,0,2531:56,40,46,37
chr2	88482702	.	G	C	785.75	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.168;QD=10.2;ReadPosRankSum=-1.601;SOR=0.685;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,33:77:99:814,0,1129:16,28,12,21
chr2	88485392	.	G	C	4455.81	PASS	AC=2;AF=0.943;AN=2;DP=4697;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3405,297,0:0,0,35,64
chr2	88485968	.	A	AC	1166.76	PASS	AC=1;AF=0.807;AN=2;DP=2364;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,22:55:99:543,0,911:18,15,9,13
chr2	88748390	.	A	T	2826.13	PASS	AC=1;AF=0.636;AN=2;DP=3748;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,61:112:99:1594,0,1290:22,29,27,34
chr2	88751751	.	A	AG	893.91	PASS	AC=2;AF=1;AN=2;DP=1353;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:99:1227,99,0:0,0,9,23
chr2	88825315	.	GT	GTT,G	186.93	PASS	AC=0,1;AF=0.35,0.2;AN=2;DP=1601;MQ=60;set=variant-filterInvariant3-variant4-variant5-variant6-variant8-variant9-variant10-filterInvariant11-variant13-variant14-variant17-variant18-variant19-filterInvariant23-variant24-variant26-variant27-variant29-variant31-variant33-variant34-variant35-variant37-variant38-variant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/2:43:76:7,27,2,7
chr2	88861757	.	T	G	759.04	PASS	AC=1;AF=0.5;AN=2;DP=247;MQ=60;set=variant-variant10-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,23:56:99:538,0,821:19,14,16,7
chr2	88870632	.	A	T	649.19	PASS	AC=1;AF=0.756;AN=2;DP=904;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:292,0,274:3,7,1,8
chr2	88874891	.	C	A	3492.08	PASS	AC=1;AF=0.75;AN=2;DP=5412;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:57,76:133:99:1990,0,1405:27,30,35,41
chr2	88875981	.	TA	T	36.59	PASS	AC=1;AF=0.5;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant4-variant24-variant31-variant35-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:16,5:21:79:79,0,351:10,6,4,1
chr2	88895123	.	T	C	3091.6	PASS	AC=1;AF=0.756;AN=2;DP=4515;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,46:107:99:1025,0,1456:28,33,21,25
chr2	88895351	.	T	C	2065.26	PASS	AC=1;AF=0.75;AN=2;DP=2779;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:783,0,734:15,12,17,14
chr2	88913273	.	G	C	571.14	PASS	AC=1;AF=0.5;AN=2;DP=1377;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant19-variant23-variant24-variant26-variant27-variant30-variant31-variant32-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,29:66:99:667,0,853:17,20,13,16
chr2	88926729	.	CCAG	C,CCAGCAG	175.73	PASS	AC=2,0;AF=0.667,0.013;AN=2;DP=1692;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:28:85:0,0,16,12
chr2	88999476	.	G	A	1440.67	PASS	AC=1;AF=0.583;AN=2;DP=4633;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,61:122:99:1577,0,1569:31,30,34,27
chr2	89050565	.	A	G	1068.12	PASS	AC=1;AF=0.583;AN=2;DP=1158;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:696,0,887:2,22,0,19
chr2	89082471	.	T	C	220.23	PASS	AC=1;AF=0.5;AN=2;DP=4845;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,38:94:99:1241,0,1411:23,33,21,17
chr2	89082495	.	T	G,A	256.23	PASS	AC=1,0;AF=0.444,0.056;AN=2;DP=3623;set=variant-variant2-variant4-variant5-variant6-filterInvariant7-filterInvariant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-filterInvariant19-variant20-variant21-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:68:99:21,30,10,7
chr2	89082503	.	C	T	271.26	PASS	AC=1;AF=0.5;AN=2;DP=3937;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,36:77:99:1388,0,2078:15,26,19,17
chr2	89082520	.	G	A	295.34	PASS	AC=1;AF=0.5;AN=2;DP=2367;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:1283,0,1915:13,21,15,16
chr2	89082536	.	T	G	154.47	PASS	AC=1;AF=0.5;AN=2;DP=1672;set=variant-variant3-variant4-variant5-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,21:51:99:875,0,1813:10,20,10,11
chr2	89082549	.	G	C	163.5	PASS	AC=1;AF=0.5;AN=2;DP=1299;FractionInformativeReads=1;set=variant-filterInvariant3-variant4-variant5-variant7-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-filterInvariant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,9:39:99:369,0,1865:10,20,3,6
chr2	89082552	.	C	T	118.5	PASS	AC=1;AF=0.5;AN=2;DP=1223;FractionInformativeReads=1;set=variant-filterInvariant3-variant4-variant5-variant7-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,7:37:99:243,0,1874:9,21,1,6
chr2	89082554	.	C	T	121.51	PASS	AC=1;AF=0.5;AN=2;DP=1163;FractionInformativeReads=1;set=variant-filterInvariant3-variant4-variant5-variant7-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-filterInvariant34-variant35-variant36-variant39-filterInvariant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,6:35:99:204,0,1789:8,21,1,5
chr2	89082565	.	C	G	52.58	PASS	AC=1;AF=0.5;AN=2;DP=764;FractionInformativeReads=1;set=variant-filterInvariant3-filterInvariant4-variant7-variant9-variant11-variant13-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-filterInvariant31-variant34-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,4:31:99:111,0,1553:8,19,1,3
chr2	89084327	.	G	C	1472.47	PASS	AC=1;AF=0.784;AN=2;DP=1612;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,15:33:99:455,0,538:8,10,7,8
chr2	89100619	.	C	T	136.89	PASS	AC=1;AF=0.5;AN=2;DP=4656;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-filterInvariant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,22:132:99:352,0,2847:61,49,22,0
chr2	89100657	.	G	A	547.36	PASS	AC=1;AF=0.5;AN=2;DP=6848;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:106,41:147:99:769,0,2727:52,54,29,12
chr2	89100697	.	C	G	1539.39	PASS	AC=1;AF=0.5;AN=2;DP=7393;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:101,68:169:99:2593,0,3970:44,57,38,30
chr2	89100701	.	A	G	1539.39	PASS	AC=1;AF=0.5;AN=2;DP=7409;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:101,71:172:99:2677,0,3984:44,57,38,33
chr2	89100725	.	G	A	1701.57	PASS	AC=1;AF=0.5;AN=2;DP=7008;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:81,73:154:99:2741,0,3251:33,48,36,37
chr2	89100759	.	A	C	1610.33	PASS	AC=1;AF=0.5;AN=2;DP=5631;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:51,60:111:99:2260,0,1805:18,33,23,37
chr2	89100764	.	A	G	1545.53	PASS	AC=1;AF=0.5;AN=2;DP=5229;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,57:100:99:2266,0,1741:12,31,20,37
chr2	89100805	.	A	G	735.26	PASS	AC=1;AF=0.5;AN=2;DP=2839;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,34:53:99:1326,0,695:2,17,8,26
chr2	89100806	.	A	G	148.21	PASS	AC=1;AF=0.5;AN=2;DP=2024;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-filterInvariant11-variant12-variant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-variant23-filterInvariant25-variant26-variant28-filterInvariant29-filterInvariant30-filterInvariant32-variant33-variant34-variant35-variant38-variant39-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:581,0,1068:5,25,4,18
chr2	89100808	.	C	A	735.26	PASS	AC=1;AF=0.5;AN=2;DP=2673;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,32:51:99:1304,0,698:2,17,6,26
chr2	89100816	.	A	G	544.42	PASS	AC=1;AF=0.5;AN=2;DP=2302;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:1076,0,675:1,17,2,21
chr2	89100865	.	T	C	103.93	PASS	AC=1;AF=0.5;AN=2;DP=725;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:99,0,273:1,7,0,3
chr2	89103755	.	C	A	1504.99	PASS	AC=1;AF=0.5;AN=2;DP=1562;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:471,0,430:7,3,6,6
chr2	89103761	.	C	G	1697.62	PASS	AC=1;AF=0.5;AN=2;DP=1694;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:471,0,430:7,4,6,6
chr2	89103765	.	A	C	869.7	PASS	AC=1;AF=0.5;AN=2;DP=1811;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:462,0,507:9,5,6,6
chr2	89103862	.	T	C	811.44	PASS	AC=1;AF=0.5;AN=2;DP=2599;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:40,20:60:99:464,0,1062:22,18,8,12
chr2	89103894	.	C	T	408.29	PASS	AC=1;AF=0.5;AN=2;DP=2179;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,11:51:99:168,0,1341:21,19,4,7
chr2	89103904	.	C	T	637.52	PASS	AC=1;AF=0.557;AN=2;DP=1961;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,32:51:99:993,0,444:9,10,16,16
chr2	89104252	.	A	ATT	405.78	PASS	AC=1;AF=0.5;AN=2;DP=1403;set=variant2-variant3-variant4-variant5-variant6-variant7-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant32-variant33-variant36-variant38-variant39-variant40-variant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:22,7:29:99:221,0,900:13,9,7,0
chr2	89104259	.	A	C	910.14	PASS	AC=1;AF=0.5;AN=2;DP=2465;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,10:35:99:317,0,968:15,10,9,1
chr2	89104266	.	G	A	1021.56	PASS	AC=1;AF=0.5;AN=2;DP=2793;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,9:39:99:235,0,1180:20,10,8,1
chr2	89104333	.	C	T	1050.5	PASS	AC=1;AF=0.5;AN=2;DP=4724;set=variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-filterInvariant10-filterInvariant11-variant15-variant16-variant17-variant19-filterInvariant20-variant21-filterInvariant23-variant25-variant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,30:82:99:620,0,1863:29,23,20,10
chr2	89104334	.	T	G,A	2489.17	PASS	AC=1,0;AF=0.5,0.023;AN=2;DP=5893;set=Intersection	GT:DP:GQ:SB	0/1:82:99:11,13,38,20
chr2	89104347	.	G	T	657.97	PASS	AC=1;AF=0.5;AN=2;DP=4810;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant9-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant18-variant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant28-variant30-variant32-variant33-variant36-filterInvariant37-variant39-variant40-variant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:66,20:86:99:521,0,2521:35,31,12,8
chr2	89104362	.	C	T	1042.42	PASS	AC=1;AF=0.5;AN=2;DP=4380;set=variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-filterInvariant10-filterInvariant11-variant15-variant16-variant17-variant19-filterInvariant20-variant21-variant25-variant26-variant27-variant28-filterInvariant29-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,35:87:99:677,0,1879:23,29,22,13
chr2	89104364	.	A	G	2873.31	PASS	AC=1;AF=0.5;AN=2;DP=5824;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,68:89:99:2533,0,408:8,13,38,30
chr2	89104430	.	G	C	531.18	PASS	AC=1;AF=0.5;AN=2;DP=2030;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-filterInvariant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,14:56:99:300,0,1469:15,27,3,11
chr2	89104897	.	CA	C	233.73	PASS	AC=1;AF=0.5;AN=2;DP=692;FractionInformativeReads=1;set=filterInvariant5-variant16-filterInvariant19-filterInvariant20-variant25-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:96,9:105:76:76,0,4078:51,45,8,1
chr2	89104977	.	T	TG	663.16	PASS	AC=1;AF=0.5;AN=2;DP=1905;set=variant5-variant7-filterInvariant9-filterInvariant10-filterInvariant13-variant16-filterInvariant18-variant19-filterInvariant23-variant25-filterInvariant33-filterInvariant37-filterInvariant38-filterInvariant40-variant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:88,18:106:99:488,0,3635:36,52,9,9
chr2	89104978	.	C	G,T	499.26	PASS	AC=0,1;AF=0.375,0.125;AN=2;DP=4603;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-variant36-filterInvariant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:103:99:34,51,9,9
chr2	89104990	.	C	T	172.09	PASS	AC=1;AF=0.5;AN=2;DP=3554;set=filterInvariant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant10-filterInvariant11-variant12-variant13-variant14-variant16-variant18-variant19-filterInvariant20-variant22-variant23-filterInvariant24-variant25-variant26-filterInvariant27-variant30-filterInvariant32-filterInvariant33-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,19:98:99:548,0,3420:33,46,10,9
chr2	89105008	.	T	C	895.02	PASS	AC=1;AF=0.5;AN=2;DP=4304;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,27:89:99:987,0,2391:22,40,12,15
chr2	89105019	.	A	C	901.79	PASS	AC=1;AF=0.5;AN=2;DP=3857;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,23:77:99:813,0,2289:19,35,9,14
chr2	89105076	.	A	T	390.25	PASS	AC=1;AF=0.5;AN=2;DP=1165;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,8:34:99:178,0,850:4,22,1,7
chr2	89157129	.	G	A	97485.2	PASS	AC=2;AF=0.966;AN=2;DP=129362;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:119,2932:3051:99:91004,5398,0:49,70,1667,1265
chr2	89157192	.	A	ACTTC,AGGTC,AGCTC	1297.16	PASS	AC=0,0,1;AF=0.167,0.167,0.167;AN=2;DP=5241;set=filterInvariant21-variant23-variant41	GT:DP:GQ:SB	0/3:1143:99:692,278,11,162
chr2	89157195	.	T	TCGTTTGATCTCCA,TAGTTTGATCTCCA,TTGATCTCCA,TTGATCTCCACCTTGGTA	1589.87	PASS	AC=0,0,0,1;AF=0.1,0.1,0.1,0.2;AN=2;DP=8563;set=filterInvariant11-variant15-filterInvariant21-variant23-variant41	GT:DP:GQ:SB	0/4:1100:99:673,265,0,162
chr2	89161069	.	G	C	2633.47	PASS	AC=1;AF=0.5;AN=2;DP=1074;set=variant2-variant5-variant17-variant27-variant32-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:81,60:141:99:1562,0,1965:37,44,33,27
chr2	89185449	.	G	C	84395.1	PASS	AC=2;AF=0.92;AN=2;DP=108047;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:151,2520:2671:99:76559,3146,0:91,60,1467,1053
chr2	89185477	.	C	G	150662	PASS	AC=2;AF=0.784;AN=2;DP=137390;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:163,2990:3153:99:124668,1311,0:93,70,1668,1322
chr2	89185492	.	C	T	160266	PASS	AC=2;AF=0.83;AN=2;DP=153774;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:176,3237:3413:99:131456,1726,0:100,76,1771,1466
chr2	89185519	.	G	C	128388	PASS	AC=2;AF=0.966;AN=2;DP=173121;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:182,3421:3603:99:99665,5170,0:98,84,1773,1648
chr2	89185552	.	C	T	121320	PASS	AC=2;AF=0.966;AN=2;DP=173346;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:180,3420:3600:99:98544,4984,0:96,84,1686,1734
chr2	89185668	.	CTCCCACAGTG	CATCCCACAGTG,CATTCCCACAGTG,CATTCACTTTCCCACAGTG,CAGTCCCACAGTG,C,CATTTACTTTCCCACAGTG,CATTCACTTCCCACAGTG,CCTTCCCACAGTG	4447.73	PASS	AC=0,1,0,0,0,0,0,0;AF=0.056,0.278,0.056,0.019,0.019,0.019,0.037,0.019;AN=2;DP=47262;set=variant2-variant3-filterInvariant4-filterInvariant6-filterInvariant8-filterInvariant9-variant10-filterInvariant12-variant13-filterInvariant14-variant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-variant23-filterInvariant24-filterInvariant25-variant27-variant28-filterInvariant29-filterInvariant34-filterInvariant35-filterInvariant36-variant38-filterInvariant39-variant41	GT:DP:GQ:SB	0/2:1257:99:768,240,5,244
chr2	89185670	.	C	CACTTTCGGCCCTGGTA,CGGCCCTGGTA,CCCTTTCGGCCCTGGTA	6216.8	PASS	AC=1,0,0;AF=0.333,0.111,0.056;AN=2;DP=5929;set=filterInvariant6-variant9-filterInvariant10-variant13-variant14-variant25-filterInvariant34-filterInvariant39-filterInvariant41	GT:DP:GQ:SB	0/1:308:99:110,95,0,103
chr2	89185774	.	G	A	1515.16	PASS	AC=1;AF=0.553;AN=2;DP=1211;MQ=60;set=variant-variant5-variant6-variant7-variant10-variant13-variant17-variant18-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,45:85:99:1107,0,925:14,26,13,32
chr2	89196757	.	G	A	2082.85	PASS	AC=1;AF=0.568;AN=2;DP=2249;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,57:119:99:1329,0,1614:37,25,32,25
chr2	89196906	.	A	C	2039.51	PASS	AC=1;AF=0.568;AN=2;DP=2263;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,52:115:99:1414,0,1739:28,35,27,25
chr2	89197190	.	C	T	2347.9	PASS	AC=1;AF=0.568;AN=2;DP=2091;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant27-variant30-variant33-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,40:88:99:1043,0,1259:17,31,16,24
chr2	89246951	.	C	T,G	9092.1	PASS	AC=1,0;AF=0.444,0.111;AN=2;DP=6394;set=variant-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant41-variant44	GT:DP:GQ:SB	0/1:351:99:99,90,86,76
chr2	89265717	.	G	C	2346.05	PASS	AC=1;AF=0.533;AN=2;DP=1624;set=variant-variant6-variant7-variant10-variant13-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,41:94:99:1139,0,1495:37,16,30,11
chr2	89277798	.	C	G	141.62	PASS	AC=2;AF=0.75;AN=2;DP=50;FractionInformativeReads=1;set=variant4-filterInvariant13-filterInvariant23-filterInvariant33-filterInvariant35-filterInvariant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:79,9,0:0,0,2,1
chr2	89278103	.	T	C	2006.9	PASS	AC=2;AF=0.591;AN=2;DP=2325;FractionInformativeReads=1;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant30-variant31-variant33-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2615,254,0:0,0,46,39
chr2	89278489	.	A	C	2597.25	PASS	AC=2;AF=0.571;AN=2;DP=3101;set=variant-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant31-variant33-variant34-variant35-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3292,327,0:0,0,59,50
chr2	89292182	.	A	G	10178.2	PASS	AC=1;AF=0.553;AN=2;DP=6480;set=variant-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,156:273:99:4283,0,2842:50,67,74,82
chr2	89292201	.	C	T	10026.5	PASS	AC=1;AF=0.533;AN=2;DP=5141;set=variant-variant6-variant7-variant10-variant13-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,161:284:99:4338,0,3109:54,69,77,84
chr2	89292401	.	T	C	2513.36	PASS	AC=1;AF=0.556;AN=2;DP=1397;set=variant-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,47:87:99:1294,0,1157:10,30,13,34
chr2	89309424	.	G	A	4003.11	PASS	AC=1;AF=0.553;AN=2;DP=2676;set=variant-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,59:137:99:1605,0,2034:52,26,39,20
chr2	89309542	.	T	G	7823.53	PASS	AC=1;AF=0.556;AN=2;DP=5119;set=variant-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,136:282:99:3555,0,3713:80,66,80,56
chr2	89309554	.	T	A	7769.8	PASS	AC=1;AF=0.556;AN=2;DP=5219;set=variant-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:152,138:290:99:3589,0,3904:88,64,76,62
chr2	89309735	.	A	G	9670.53	PASS	AC=1;AF=0.556;AN=2;DP=6642;set=variant-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:182,191:373:99:4869,0,4726:89,93,90,101
chr2	89309762	.	T	G	9717.68	PASS	AC=1;AF=0.556;AN=2;DP=6584;set=variant-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:179,185:364:99:4610,0,4606:88,91,81,104
chr2	89399858	.	C	CAA	97.67	PASS	AC=2;AF=0.977;AN=2;DP=84;FS=0;MQRankSum=-0.736;ReadPosRankSum=0.736;set=variant-variant5-variant7-variant8-variant11-variant13-variant14-variant16-variant19-variant20-variant24-variant25-variant27-variant29-variant31-variant32-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,0,3
chr2	89459133	.	C	G	397.57	PASS	AC=1;AF=0.5;AN=2;DP=157;FractionInformativeReads=1;set=variant4-variant12-variant16-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:241,0,567:15,2,7,1
chr2	89459357	.	A	T	594.81	PASS	AC=1;AF=0.583;AN=2;DP=666;FractionInformativeReads=1;set=variant-filterInvariant6-filterInvariant10-filterInvariant22-filterInvariant25-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:111,12:123:98:98,0,2704:51,60,0,12
chr2	89513004	.	A	G	3018.68	PASS	AC=1;AF=0.5;AN=2;DP=2966;set=variant-variant6-variant10-variant13-variant17-variant22-variant24-variant25-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:158,150:308:99:3452,0,3982:77,81,79,71
chr2	89521584	.	G	C	95.53	PASS	AC=1;AF=0.583;AN=2;DP=98;FractionInformativeReads=1;set=variant-variant13-variant24-variant25-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:138,0,273:4,5,5,0
chr2	89533687	.	T	G	2251.37	PASS	AC=1;AF=0.545;AN=2;DP=1962;set=variant-variant6-variant10-variant13-variant17-variant22-variant24-variant25-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,103:156:99:2613,0,1302:37,16,54,49
chr2	89533810	.	C	T	2592.56	PASS	AC=1;AF=0.55;AN=2;DP=2354;set=variant-variant6-variant10-variant13-variant17-variant22-variant24-variant25-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:110,113:223:99:2797,0,2839:63,47,56,57
chr2	89544163	.	G	C	518.73	PASS	AC=1;AF=0.542;AN=2;DP=959;FractionInformativeReads=1;set=variant-variant6-variant10-variant13-variant17-variant19-variant22-variant24-variant25-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:980,0,1035:28,13,29,8
chr2	89544473	.	A	G	1033.53	DRAGENHardSNP	AC=1;AF=0.542;AN=2;DP=1234;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:50,51:101:99:1173,0,1199:18,32,16,35
chr2	89544848	.	C	T	38.3	PASS	AC=1;AF=0.55;AN=2;DP=940;set=filterInvariant-variant6-variant13-variant17-variant22-variant24-variant25-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:93,25:118:99:401,0,2414:52,41,11,14
chr2	89924052	.	A	AC	552.88	PASS	AC=1;AF=0.643;AN=2;DP=1238;set=variant-variant6-variant10-variant13-variant17-variant18-variant19-variant22-variant24-variant25-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,61:84:99:1642,0,463:13,10,39,22
chr2	89986921	.	C	T	2288.95	PASS	AC=1;AF=0.563;AN=2;DP=2590;set=variant-variant6-variant7-variant13-variant16-variant17-variant18-variant19-variant22-filterInvariant24-variant25-variant33-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:128,36:164:99:895,0,3435:65,63,26,10
chr2	89999076	.	T	C	470.82	PASS	AC=2;AF=0.955;AN=2;DP=1611;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-variant9-filterInvariant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-filterInvariant17-filterInvariant18-variant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-variant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:950,84,0:0,0,3,25
chr2	90008103	.	G	A	3682.94	PASS	AC=1;AF=0.577;AN=2;DP=3520;set=variant-variant6-variant13-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:118,134:252:99:3145,0,3035:50,68,56,78
chr2	90008231	.	C	A	1369.26	PASS	AC=1;AF=0.5;AN=2;DP=739;set=variant4-variant12-variant13-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,36:56:99:999,0,510:3,17,10,26
chr2	90008243	.	G	C	52.06	PASS	AC=1;AF=0.75;AN=2;DP=222;FractionInformativeReads=1;set=filterInvariant2-variant8-variant16-variant17-variant23-variant24-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,10:38:99:260,0,863:7,21,0,10
chr2	90008306	.	A	AG	157.34	PASS	AC=1;AF=0.6;AN=2;DP=235;set=variant-variant6-variant14-variant18-variant19-variant22-variant24-variant25-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:97:97,0,194:0,7,0,4
chr2	90024874	.	C	A	1150.06	PASS	AC=1;AF=0.538;AN=2;DP=2129;set=variant-variant6-variant14-variant17-variant18-variant19-variant22-variant24-variant25-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,80:135:99:1872,0,1303:28,27,38,42
chr2	90025275	.	G	C	2861.67	PASS	AC=1;AF=0.531;AN=2;DP=2159;set=variant-variant6-variant7-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant33-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,59:128:99:1425,0,1571:40,29,38,21
chr2	90044355	.	AG	A	3212.24	PASS	AC=1;AF=0.5;AN=2;DP=447;FS=0;set=variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:99,97:196:99:2874,0,2935:46,53,45,52
chr2	90108416	.	G	A	921.29	PASS	AC=2;AF=0.932;AN=2;DP=3946;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2060,192,0:0,0,39,25
chr2	90108778	.	G	T	1912.82	PASS	AC=1;AF=0.854;AN=2;DP=4841;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,50:103:99:1378,0,1424:35,18,33,17
chr2	90121675	.	T	C	1146.02	PASS	AC=2;AF=0.898;AN=2;DP=2780;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1885,156,0:0,0,40,12
chr2	90121845	.	A	G	8397	PASS	AC=1;AF=0.5;AN=2;DP=7952;set=variant-variant6-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:327,123:450:99:4186,0,13345:181,146,77,46
chr2	90121849	.	A	G	8470.57	PASS	AC=1;AF=0.5;AN=2;DP=8005;set=variant-variant6-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:332,125:457:99:4201,0,13387:182,150,78,47
chr2	90121926	.	G	T	6441.93	PASS	AC=1;AF=0.5;AN=2;DP=7934;set=variant-variant6-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:304,160:464:99:3303,0,8479:156,148,72,88
chr2	90121985	.	A	G	5548.87	PASS	AC=1;AF=0.5;AN=2;DP=7420;set=variant-variant6-variant10-variant12-variant13-variant14-variant17-variant18-variant22-variant23-variant24-variant25-variant30-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:319,113:432:99:2307,0,8670:152,167,42,71
chr2	90139116	.	G	A	267.18	PASS	AC=1;AF=0.5;AN=2;DP=2784;set=variant-variant2-filterInvariant3-variant6-filterInvariant9-variant10-filterInvariant11-variant12-filterInvariant13-variant14-variant18-filterInvariant19-filterInvariant20-filterInvariant22-variant23-filterInvariant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant32-filterInvariant35-filterInvariant36-variant37-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:84,15:99:83:83,0,2343:52,32,7,8
chr2	90154255	.	G	A	421.49	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=169;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:186,0,264:2,8,1,7
chr2	90211923	.	A	G	2001.83	PASS	AC=1;AF=0.5;AN=2;DP=947;set=variant4-variant12-variant13-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,66:134:99:1524,0,1520:34,34,34,32
chr2	90212050	.	G	A	689.37	PASS	AC=2;AF=0.66;AN=2;DP=1669;set=variant-variant4-variant6-variant7-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1758,141,0:0,0,21,26
chr2	90249415	.	A	G	1690.57	PASS	AC=1;AF=0.5;AN=2;DP=4383;set=variant-variant6-variant7-variant10-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:203,88:291:99:1994,0,5652:88,115,36,52
chr2	90249468	.	C	T	1183.09	PASS	AC=1;AF=0.5;AN=2;DP=2323;set=variant-variant6-variant7-variant10-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:127,46:173:99:1474,0,4997:41,86,22,24
chr2	90249478	.	T	C	1132.94	PASS	AC=1;AF=0.5;AN=2;DP=1977;FractionInformativeReads=1;set=variant-variant6-variant7-variant10-variant17-variant18-variant19-variant22-variant24-variant25-variant27-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:115,43:158:99:1429,0,4716:34,81,20,23
chr2	90249497	.	T	G	460.61	PASS	AC=1;AF=0.5;AN=2;DP=1399;set=variant-variant6-variant7-variant10-variant17-variant18-variant19-variant22-filterInvariant24-variant25-variant27-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:95,29:124:99:686,0,2816:24,71,12,17
chr2	90249524	.	GTGTTGGTAGAGGGGGATGTGAAGTCACCTCTGCATCCCAATTTCT	G	132.57	PASS	AC=1;AF=0.5;AN=2;DP=660;set=variant-filterInvariant6-filterInvariant7-variant10-variant17-variant18-variant19-filterInvariant22-filterInvariant25-variant38-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:58,10:68:99:158,0,2370:14,44,5,5
chr2	90458538	.	T	C	1200.33	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=12807;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:139,103:242:99:2176,0,3213:92,47,70,33
chr2	90458594	.	T	C	4017.35	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=28619;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:287,211:498:99:4069,0,5760:158,129,129,82
chr2	90458606	.	C	T	826.64	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=19841;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:485,84:569:99:484,0,10799:276,209,39,45
chr2	90458745	.	T	C	1030.78	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=7326;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:89,71:160:99:1643,0,2029:23,66,13,58
chr2	91678903	.	A	G	691.11	PASS	AC=1;AF=0.5;AN=2;DP=10717;set=filterInvariant-filterInvariant2-filterInvariant3-variant4-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-filterInvariant13-variant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:204,54:258:99:949,0,4640:137,67,24,30
chr2	91679044	.	A	G	4264.55	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=30008;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:329,250:579:99:4615,0,6575:149,180,110,140
chr2	91710132	.	C	T	70.68	PASS	AC=2;AF=0.95;AN=2;DP=80;FS=0;FractionInformativeReads=1;set=variant3-variant5-variant10-variant12-variant19-variant20-variant21-variant22-variant25-variant28-variant31-variant32-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:130,12,0:0,0,3,1
chr2	91714722	.	C	G	70.05	PASS	AC=1;AF=0.536;AN=2;DP=132;FS=0;FractionInformativeReads=1;set=variant3-filterInvariant10-filterInvariant13-filterInvariant17-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant27-variant33-filterInvariant35-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:58:78,0,58:2,1,2,2
chr2	91766609	.	G	A	542.72	PASS	AC=1;AF=0.5;AN=2;DP=3894;set=filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant12-filterInvariant13-variant16-filterInvariant28-filterInvariant29-filterInvariant31-filterInvariant35-filterInvariant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:187,49:236:99:697,0,4822:88,99,19,30
chr2	91766685	.	G	T	1005.02	PASS	AC=1;AF=0.5;AN=2;DP=7478;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,37:114:99:1231,0,3181:26,51,8,29
chr2	91766686	.	A	G	1005.02	PASS	AC=1;AF=0.5;AN=2;DP=7372;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,34:110:99:1231,0,3181:26,50,7,27
chr2	91766729	.	C	CAG	2478.6	PASS	AC=1;AF=0.5;AN=2;DP=4330;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,45:58:99:1850,0,425:3,10,17,28
chr2	91767199	.	A	C	296.47	PASS	AC=1;AF=0.5;AN=2;DP=1317;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:518,0,635:16,3,13,2
chr2	91767507	.	T	A	906.27	PASS	AC=1;AF=0.5;AN=2;DP=7675;set=variant-filterInvariant3-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-variant19-variant21-variant22-variant23-variant25-filterInvariant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:150,40:190:99:633,0,4137:57,93,14,26
chr2	91809227	.	A	G	612.8	PASS	AC=1;AF=0.5;AN=2;DP=8401;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:113,66:179:99:1492,0,2839:71,42,36,30
chr2	91809324	.	C	T	1120.08	PASS	AC=1;AF=0.5;AN=2;DP=11677;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:195,62:257:99:1167,0,4808:88,107,26,36
chr2	91809385	.	C	G	827.56	PASS	AC=1;AF=0.5;AN=2;DP=9198;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:172,49:221:99:976,0,4378:70,102,22,27
chr2	91809402	.	T	G	807.82	PASS	AC=1;AF=0.5;AN=2;DP=1235;set=variant17-filterInvariant18-filterInvariant19-filterInvariant22-filterInvariant25-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:153,38:191:99:561,0,4575:59,94,15,23
chr2	91809404	.	G	C	723.9	PASS	AC=1;AF=0.5;AN=2;DP=7729;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:146,40:186:99:734,0,4433:55,91,17,23
chr2	91809456	.	T	G	74.82	PASS	AC=1;AF=0.5;AN=2;DP=3669;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-filterInvariant21-variant22-variant23-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,18:80:99:385,0,1788:17,45,7,11
chr2	91809468	.	C	CTAA	190.02	PASS	AC=1;AF=0.5;AN=2;DP=3248;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,17:62:99:578,0,1788:13,32,7,10
chr2	91809470	.	G	A	199.23	PASS	AC=1;AF=0.5;AN=2;DP=3125;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:42,16:58:99:578,0,1788:12,30,6,10
chr2	91809472	.	G	GTGACTAACAA	277.27	PASS	AC=1;AF=0.5;AN=2;DP=3017;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:38,16:54:99:629,0,1710:12,26,6,10
chr2	91924782	.	C	A	147.31	PASS	AC=1;AF=0.512;AN=2;DP=685;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:251,0,131:4,0,7,1
chr2	91924804	.	T	C	170.86	PASS	AC=1;AF=0.5;AN=2;DP=1065;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:6,16:22:99:526,0,143:4,2,14,2
chr2	91924972	.	G	A	354.47	PASS	AC=1;AF=0.5;AN=2;DP=6310;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-variant6-variant8-variant9-filterInvariant10-variant11-variant12-variant13-filterInvariant14-variant16-variant17-filterInvariant18-variant19-filterInvariant20-filterInvariant22-variant23-filterInvariant24-filterInvariant26-filterInvariant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-filterInvariant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:145,17:162:99:193,0,4095:88,57,13,4
chr2	91925022	.	C	A	1690.56	PASS	AC=1;AF=0.5;AN=2;DP=10048;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:95,122:217:99:3036,0,2366:56,39,64,58
chr2	91925139	.	C	G	737.32	PASS	AC=1;AF=0.5;AN=2;DP=10046;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:95,76:171:99:1953,0,2651:35,60,22,54
chr2	91925151	.	C	T	2717.45	PASS	AC=1;AF=0.5;AN=2;DP=9169;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:61,88:149:99:2340,0,1486:24,37,27,61
chr2	91925267	.	T	C	150.24	PASS	AC=1;AF=0.5;AN=2;DP=490;FractionInformativeReads=1;set=variant-variant3-variant5-variant8-variant9-variant10-variant11-variant16-variant17-variant19-variant21-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,8:21:99:201,0,398:4,9,0,8
chr2	91926926	.	C	T	101.87	PASS	AC=1;AF=0.5;AN=2;DP=562;FractionInformativeReads=1;set=variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:398,0,171:5,3,7,8
chr2	91927088	.	G	A	337.99	PASS	AC=1;AF=0.5;AN=2;DP=4763;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,54:124:99:1394,0,1747:41,29,37,17
chr2	91927130	.	C	G	676.27	PASS	AC=1;AF=0.5;AN=2;DP=6507;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,67:142:99:2582,0,4149:41,34,41,26
chr2	91927131	.	C	G	676.27	PASS	AC=1;AF=0.5;AN=2;DP=6507;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,67:142:99:2579,0,4183:41,34,41,26
chr2	91927133	.	GT	G	667.24	PASS	AC=1;AF=0.5;AN=2;DP=6573;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,67:144:99:2579,0,4183:42,35,41,26
chr2	91927214	.	T	C	349.26	PASS	AC=1;AF=0.5;AN=2;DP=7559;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,53:151:99:1288,0,2536:51,47,16,37
chr2	91927230	.	C	T	472.03	PASS	AC=1;AF=0.5;AN=2;DP=7250;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,45:132:99:1570,0,3546:47,40,10,35
chr2	91927231	.	A	G	472.03	PASS	AC=1;AF=0.5;AN=2;DP=7206;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,43:132:99:1570,0,3546:47,42,8,35
chr2	91927284	.	T	C	87.85	PASS	AC=1;AF=0.5;AN=2;DP=2866;set=filterInvariant4-filterInvariant5-filterInvariant7-variant8-filterInvariant9-filterInvariant10-filterInvariant16-filterInvariant17-filterInvariant19-variant24-filterInvariant26-filterInvariant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant34-variant36-filterInvariant37-variant39-filterInvariant40-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:109,20:129:99:436,0,3187:59,50,0,20
chr2	91933207	.	T	C	44.51	PASS	AC=1;AF=0.5;AN=2;DP=6764;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-variant22-filterInvariant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-variant36-variant37-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,48:150:99:981,0,2815:39,63,20,28
chr2	91933225	.	A	G	122.07	PASS	AC=1;AF=0.5;AN=2;DP=3418;set=filterInvariant3-filterInvariant6-filterInvariant8-filterInvariant9-variant10-variant11-variant12-variant13-filterInvariant14-variant18-variant19-variant20-variant22-variant24-variant26-filterInvariant27-variant30-filterInvariant31-variant34-variant36-filterInvariant37-variant39-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,25:110:99:507,0,2427:30,55,10,15
chr2	91935981	.	C	T	117.79	PASS	AC=1;AF=0.5;AN=2;DP=3416;set=variant-filterInvariant3-variant4-variant5-variant8-filterInvariant9-filterInvariant11-filterInvariant12-variant13-filterInvariant15-variant16-filterInvariant17-filterInvariant19-filterInvariant20-filterInvariant23-variant24-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-filterInvariant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,16:96:99:383,0,2297:56,24,15,1
chr2	91936030	.	A	G	94.13	PASS	AC=1;AF=0.5;AN=2;DP=6505;set=filterInvariant-filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant8-filterInvariant10-filterInvariant11-variant12-variant13-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-filterInvariant24-variant26-filterInvariant27-variant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant40-variant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:134,29:163:99:651,0,3582:82,52,29,0
chr2	91936054	.	T	C	629.64	PASS	AC=1;AF=0.5;AN=2;DP=10104;set=variant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:163,51:214:99:1367,0,4227:89,74,50,1
chr2	91936121	.	A	G	1923.88	PASS	AC=1;AF=0.5;AN=2;DP=18647;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:231,159:390:99:3699,0,5543:116,115,92,67
chr2	91936138	.	G	A	3734.32	PASS	AC=1;AF=0.5;AN=2;DP=19839;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:231,180:411:99:6830,0,9039:114,117,99,81
chr2	91936147	.	G	A	3792.82	PASS	AC=1;AF=0.5;AN=2;DP=20368;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:234,186:420:99:6878,0,9118:117,117,97,89
chr2	91937490	.	T	C	57.01	PASS	AC=1;AF=0.5;AN=2;DP=1477;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:256,0,383:8,5,6,4
chr2	91937534	.	G	T	202.4	PASS	AC=1;AF=0.5;AN=2;DP=470;FractionInformativeReads=1;set=variant8-filterInvariant9-variant16-variant17-variant28-variant33-filterInvariant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,6:33:99:101,0,903:19,8,5,1
chr2	91937559	.	A	C	39.08	PASS	AC=1;AF=0.5;AN=2;DP=702;FractionInformativeReads=1;set=filterInvariant-variant8-filterInvariant9-variant15-variant16-variant17-filterInvariant28-variant33-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,11:45:99:216,0,1031:23,11,8,3
chr2	91937662	.	A	G	757.2	PASS	AC=1;AF=0.5;AN=2;DP=5106;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,35:92:99:804,0,1390:28,29,17,18
chr2	91937699	.	C	T	790.65	PASS	AC=1;AF=0.5;AN=2;DP=4742;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,38:102:99:770,0,1600:28,36,16,22
chr2	91937761	.	C	T	483.13	PASS	AC=1;AF=0.5;AN=2;DP=2361;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,17:58:99:387,0,1080:15,26,4,13
chr2	91937775	.	G	A	395.34	PASS	AC=1;AF=0.5;AN=2;DP=1891;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,16:53:99:357,0,931:12,25,5,11
chr2	91940172	.	A	G	152.41	PASS	AC=1;AF=0.5;AN=2;DP=1263;set=filterInvariant3-filterInvariant5-variant8-filterInvariant9-filterInvariant16-filterInvariant34-filterInvariant36-filterInvariant39-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:105,16:121:99:120,0,2869:65,40,9,7
chr2	91940297	.	C	T	225.41	PASS	AC=1;AF=0.5;AN=2;DP=13062;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-filterInvariant8-filterInvariant9-filterInvariant10-variant11-variant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant22-filterInvariant23-variant24-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-variant33-variant34-filterInvariant35-variant36-filterInvariant37-variant39-variant40-filterInvariant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:231,32:263:99:675,0,9416:108,123,30,2
chr2	91940306	.	G	A	336.2	PASS	AC=1;AF=0.5;AN=2;DP=13486;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-variant5-filterInvariant8-variant9-variant10-variant11-variant12-filterInvariant13-filterInvariant15-variant16-variant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-variant24-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-filterInvariant33-variant34-filterInvariant35-variant36-filterInvariant37-filterInvariant39-variant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:222,40:262:99:872,0,9382:105,117,34,6
chr2	91943835	.	T	C	64.29	PASS	AC=1;AF=0.5;AN=2;DP=4468;set=filterInvariant2-variant3-variant4-variant5-filterInvariant6-variant8-filterInvariant9-filterInvariant10-variant11-variant12-filterInvariant13-filterInvariant14-variant16-filterInvariant17-variant18-variant19-variant20-variant22-variant23-filterInvariant24-filterInvariant25-variant26-filterInvariant28-filterInvariant29-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-filterInvariant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,16:85:99:248,0,1850:40,29,3,13
chr2	91944240	.	A	C	162.02	PASS	AC=1;AF=0.5;AN=2;DP=217;set=variant5-variant9-filterInvariant26-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,11:42:99:211,0,1014:6,25,5,6
chr2	91955313	.	G	A	2265.41	PASS	AC=1;AF=0.5;AN=2;DP=15384;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:181,169:350:99:4225,0,4746:87,94,63,106
chr2	91955404	.	T	C	852.14	PASS	AC=1;AF=0.5;AN=2;DP=6036;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:95,39:134:99:1233,0,2494:33,62,3,36
chr2	91960776	.	AG	A	307.04	PASS	AC=1;AF=0.5;AN=2;DP=376;set=variant4-variant10-variant12-variant13-variant15-variant30-variant31-variant34-variant35-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:347,0,559:14,10,10,8
chr2	91962876	.	G	A	523.33	PASS	AC=1;AF=0.5;AN=2;DP=2181;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,18:42:99:641,0,1146:12,12,8,10
chr2	91962879	.	A	T	490.42	PASS	AC=1;AF=0.5;AN=2;DP=2158;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,16:41:99:588,0,1185:13,12,7,9
chr2	91962942	.	G	A	362.96	PASS	AC=1;AF=0.5;AN=2;DP=911;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-variant12-variant13-filterInvariant18-variant19-variant20-variant22-variant23-variant25-variant27-variant29-variant30-variant31-filterInvariant33-variant35-variant36-variant37-filterInvariant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:243,0,439:6,12,5,6
chr2	91962954	.	C	A	338.31	PASS	AC=1;AF=0.5;AN=2;DP=863;set=variant-variant2-variant4-variant5-variant8-variant9-variant11-filterInvariant12-variant13-filterInvariant18-variant19-variant20-variant22-variant23-variant25-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:250,0,452:5,12,5,7
chr2	92031664	.	T	C	61.45	PASS	AC=1;AF=0.583;AN=2;DP=73;FractionInformativeReads=1;set=variant4-variant13-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:51:307,0,51:2,1,6,6
chr2	92031762	.	G	T	220.98	PASS	AC=1;AF=0.571;AN=2;DP=163;FractionInformativeReads=1;set=variant4-variant12-variant13-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:190,0,271:6,6,5,6
chr2	92047432	.	G	C	172.69	PASS	AC=1;AF=0.5;AN=2;DP=574;set=variant-variant2-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,388:2,4,3,0
chr2	92047438	.	T	C	172.69	PASS	AC=1;AF=0.5;AN=2;DP=606;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,388:2,4,3,0
chr2	92047442	.	C	T	172.69	PASS	AC=1;AF=0.5;AN=2;DP=610;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,388:2,4,3,0
chr2	92047529	.	G	A	39.25	PASS	AC=1;AF=0.5;AN=2;DP=161;set=variant-variant3-variant4-variant7-variant11-variant12-variant16-variant17-variant27-variant31-variant33-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:31:103,0,31:1,0,1,3
chr2	92047549	.	C	T	38.27	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=0;FractionInformativeReads=1;set=variant4-variant7-variant12-variant17-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:31:76,0,31:1,0,1,3
chr2	92075583	.	C	T	42.3	PASS	AC=1;AF=0.5;AN=2;DP=857;FractionInformativeReads=1;set=filterInvariant10-filterInvariant17-filterInvariant22-filterInvariant25-variant35-filterInvariant37-filterInvariant38-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,12:73:63:63,0,1612:27,34,6,6
chr2	92075596	.	C	T	78.88	PASS	AC=1;AF=0.5;AN=2;DP=837;FractionInformativeReads=1;set=filterInvariant10-variant17-filterInvariant22-filterInvariant25-variant35-filterInvariant37-filterInvariant38-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,12:72:81:81,0,1549:26,34,6,6
chr2	92075615	.	A	G	551.33	PASS	AC=1;AF=0.5;AN=2;DP=3785;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:52,12:64:99:337,0,2107:21,31,6,6
chr2	92075618	.	T	C	551.33	PASS	AC=1;AF=0.5;AN=2;DP=3699;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:50,12:62:99:340,0,2085:19,31,6,6
chr2	92075709	.	A	G	247.64	PASS	AC=1;AF=0.5;AN=2;DP=617;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,4:16:81:81,0,423:2,10,0,4
chr2	92129194	.	C	T	210.75	PASS	AC=1;AF=0.5;AN=2;DP=1102;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-filterInvariant11-variant13-filterInvariant14-variant15-variant16-filterInvariant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant27-filterInvariant30-variant31-variant32-filterInvariant33-variant34-variant35-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,7:31:93:93,0,588:13,11,2,5
chr2	92129749	.	T	C	2867.22	PASS	AC=2;AF=0.648;AN=2;DP=2536;FractionInformativeReads=1;set=variant-variant4-variant7-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2639,255,0:0,0,37,48
chr2	95464577	.	T	C	212.71	PASS	AC=1;AF=0.55;AN=2;DP=116;FractionInformativeReads=1;set=variant4-variant12-variant13-variant14-variant31-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:31:162,0,31:1,0,4,0
chr2	95472246	.	C	G	71.27	PASS	AC=1;AF=0.75;AN=2;DP=17;FS=0;FractionInformativeReads=1;set=variant4-variant14-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:66:66,0,77:0,2,1,2
chr2	95481396	.	C	T	1051.13	PASS	AC=1;AF=0.556;AN=2;DP=1157;set=variant4-variant12-variant13-variant14-variant31-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,37:123:99:667,0,2172:43,43,14,23
chr2	95488700	.	A	C	310.46	PASS	AC=1;AF=0.556;AN=2;DP=289;FractionInformativeReads=1;set=variant4-variant12-variant13-variant14-variant31-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:197,0,395:10,6,6,1
chr2	95513809	.	C	T	37.08	PASS	AC=1;AF=0.5;AN=2;DP=2083;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant7-variant8-filterInvariant11-variant12-variant13-filterInvariant14-filterInvariant16-filterInvariant21-filterInvariant22-variant23-filterInvariant25-variant29-variant31-variant33-filterInvariant34-variant35-variant36-variant37-variant39-filterInvariant40-variant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:48,10:58:99:269,0,2033:29,19,6,4
chr2	95513817	.	G	T	31.1	PASS	AC=1;AF=0.5;AN=2;DP=3081;set=filterInvariant-filterInvariant2-variant3-filterInvariant4-variant5-variant7-variant8-filterInvariant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-filterInvariant22-variant23-filterInvariant24-variant25-filterInvariant27-variant29-variant30-variant31-filterInvariant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:51,10:61:99:266,0,2055:28,23,6,4
chr2	95513852	.	C	T	88.77	PASS	AC=1;AF=0.5;AN=2;DP=2951;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant7-variant8-filterInvariant11-variant12-variant13-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-variant25-filterInvariant27-variant29-variant30-filterInvariant31-filterInvariant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:56,8:64:99:189,0,2304:29,27,4,4
chr2	95513854	.	G	C	88.77	PASS	AC=1;AF=0.5;AN=2;DP=688;set=filterInvariant-filterInvariant11-filterInvariant23-filterInvariant24-variant29-filterInvariant33-variant37-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,9:65:99:189,0,2304:29,27,4,5
chr2	95513877	.	A	G	82.09	PASS	AC=1;AF=0.5;AN=2;DP=3077;set=filterInvariant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-variant8-variant10-filterInvariant11-variant12-variant13-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-variant21-filterInvariant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:52,10:62:99:263,0,2178:24,28,4,6
chr2	95513880	.	C	T	82.09	PASS	AC=1;AF=0.5;AN=2;DP=3052;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant10-filterInvariant11-variant12-variant13-filterInvariant15-variant16-variant17-filterInvariant18-variant19-filterInvariant20-variant21-filterInvariant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:52,10:62:99:263,0,2178:24,28,4,6
chr2	95513889	.	T	A	118.84	PASS	AC=1;AF=0.5;AN=2;DP=2317;set=filterInvariant-variant2-variant3-variant5-variant7-variant8-filterInvariant11-filterInvariant12-variant13-variant16-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant29-variant30-filterInvariant31-variant33-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,10:63:99:257,0,2211:24,29,4,6
chr2	95513893	.	A	G	118.84	PASS	AC=1;AF=0.5;AN=2;DP=2817;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-filterInvariant11-variant12-variant13-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:52,10:62:99:260,0,2169:24,28,4,6
chr2	95522747	.	C	G	1372.03	PASS	AC=2;AF=0.66;AN=2;DP=2346;FractionInformativeReads=1;set=variant-variant4-variant7-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2120,216,0:0,0,44,28
chr2	95537179	.	TAC	T	4385.88	PASS	AC=1;AF=0.556;AN=2;DP=1470;set=variant4-variant12-variant13-variant14-variant31-variant34-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,62:149:99:2300,0,3397:54,33,40,22
chr2	95537245	.	C	G	5011.33	PASS	AC=1;AF=0.64;AN=2;DP=5555;MQ=60;set=variant-variant4-variant7-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:110,89:199:99:2212,0,2800:58,52,52,37
chr2	95537572	.	C	T	1221.36	PASS	AC=1;AF=0.583;AN=2;DP=3882;MQ=60;set=variant-variant4-variant7-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,71:169:99:1652,0,2644:53,45,35,36
chr2	95537622	.	A	G	4356.82	PASS	AC=1;AF=0.66;AN=2;DP=4811;set=variant-variant4-variant7-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:103,94:197:99:2185,0,2611:57,46,49,45
chr2	95537871	.	GC	GCC,GCCC,G	278.28	PASS	AC=0,1,0;AF=0.37,0.148,0.093;AN=2;DP=999;MQ=60;set=variant-variant4-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant22-variant23-filterInvariant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:22:99:2,12,1,7
chr2	95542376	.	G	T	122.25	PASS	AC=1;AF=0.5;AN=2;DP=22357;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:403,39:442:99:418,0,17752:224,179,21,18
chr2	95542377	.	C	T	125.26	PASS	AC=1;AF=0.5;AN=2;DP=22551;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:404,41:445:99:421,0,17710:224,180,22,19
chr2	95542416	.	A	G	542.23	PASS	AC=1;AF=0.5;AN=2;DP=25128;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:452,53:505:99:850,0,19009:237,215,26,27
chr2	95542419	.	G	A	539.23	PASS	AC=1;AF=0.5;AN=2;DP=25245;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:453,53:506:99:847,0,19039:240,213,26,27
chr2	95542476	.	C	T	207.37	PASS	AC=1;AF=0.5;AN=2;DP=24395;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-variant29-variant30-variant31-variant32-filterInvariant33-filterInvariant34-filterInvariant36-variant37-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:445,43:488:99:122,0,12736:215,230,20,23
chr2	95691596	.	C	T	6112.74	PASS	AC=1;AF=0.5;AN=2;DP=2689;MQ=60;set=variant4-variant12-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:238,191:429:99:4267,0,5980:124,114,110,81
chr2	95719703	.	C	A	267.83	PASS	AC=1;AF=0.5;AN=2;DP=118;MQ=60;set=variant4-variant12-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:141,0,318:1,8,3,3
chr2	95775761	.	G	A	1173.02	PASS	AC=1;AF=0.5;AN=2;DP=498;MQ=60;set=variant4-variant12-variant13-variant31-variant35-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,17:62:99:302,0,1058:26,19,10,7
chr2	95787810	.	T	G	911.64	PASS	AC=2;AF=1;AN=2;DP=1155;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:581,48,0:0,0,5,11
chr2	95830737	.	C	CA	2069.45	PASS	AC=2;AF=0.885;AN=2;DP=2398;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1989,192,0:0,0,42,20
chr2	95846158	.	T	C	288.47	PASS	AC=2;AF=0.885;AN=2;DP=403;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:352,24,0:0,0,0,8
chr2	95847040	.	TGCG	T	3818.12	PASS	AC=2;AF=0.989;AN=2;DP=5863;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:5336,366,0:0,0,65,57
chr2	95848018	.	T	C	458.45	PASS	AC=2;AF=0.885;AN=2;DP=959;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:680,57,0:0,0,14,5
chr2	95848354	.	G	A	1783.06	PASS	AC=2;AF=0.885;AN=2;DP=2045;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1631,144,0:0,0,27,21
chr2	95849653	.	T	C	548.1	PASS	AC=2;AF=0.885;AN=2;DP=766;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:610,60,0:0,0,13,7
chr2	95944902	.	A	AC	806.43	PASS	AC=2;AF=1;AN=2;DP=1442;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1091,96,0:0,0,15,17
chr2	95945568	.	G	A	1280.23	PASS	AC=2;AF=0.875;AN=2;DP=2620;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1983,174,0:0,0,33,25
chr2	95945830	.	G	T	1563.51	PASS	AC=2;AF=0.875;AN=2;DP=2480;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,45:46:99:1351,127,0:0,1,20,25
chr2	95947085	.	A	G	5268.92	PASS	AC=2;AF=0.885;AN=2;DP=7995;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:5373,546,0:0,0,80,103
chr2	95952177	.	C	G	1978.49	PASS	AC=2;AF=0.966;AN=2;DP=2944;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1831,171,0:0,0,26,31
chr2	95952641	.	A	G	1715.89	PASS	AC=1;AF=0.5;AN=2;DP=4612;set=variant-variant3-variant8-variant11-variant15-variant19-variant20-variant22-variant25-variant28-variant30-variant31-variant32-variant34-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:131,117:248:99:2845,0,3395:57,74,51,66
chr2	95956957	.	G	GT	1164.27	PASS	AC=1;AF=0.5;AN=2;DP=183;FS=0;FractionInformativeReads=0.929;MQ=60;MQRankSum=-1.639;QD=6.36;ReadPosRankSum=-0.403;SOR=0.709;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:107,63:170:99:1202,0,2438:43,64,25,38
chr2	95962959	.	G	GAGAGAGAGAGAAAGAGGGGAGAC,GAGAGAGAGAGAAAGAGGGGAGAGAGAGAGAGAGAAAGAGGGGAGAC	508.46	PASS	AC=2,0;AF=0.577,0.385;AN=2;DP=127;FS=0;set=variant-variant6-variant10-variant12-variant24-variant25-variant28-variant32-variant36-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:9:54:0,0,8,1
chr2	95963242	.	C	G	1130.95	PASS	AC=2;AF=0.872;AN=2;DP=2414;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1713,149,0:0,0,49,1
chr2	96012907	.	C	G	4012.71	PASS	AC=2;AF=0.859;AN=2;DP=7832;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,186:186:99:5352,556,0:0,0,79,107
chr2	96048859	.	GCCCACCCGCCCATCCA	G	742.89	PASS	AC=1;AF=0.5;AN=2;DP=292;MQ=60;set=variant8-variant11-variant19-variant22-variant28-variant30-variant31-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:722,0,772:13,7,14,5
chr2	96048862	.	C	T	41.28	PASS	AC=1;AF=0.683;AN=2;DP=597;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:351,0,798:16,5,9,6
chr2	96049917	.	TACAC	TAC,TACACACAC,TACACAC,TACACACACAC,TACACACACACACAC,TACACACACACAC,T	411.61	PASS	AC=0,0,1,0,0,0,0;AF=0.05,0.1,0.275,0.125,0.063,0.075,0.013;AN=2;DP=1366;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-filterInvariant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:32:99:5,4,12,11
chr2	96076409	.	C	T	183.53	PASS	AC=2;AF=0.989;AN=2;DP=699;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:844,66,0:0,0,9,13
chr2	96517471	.	A	G	223.1	PASS	AC=1;AF=0.5;AN=2;DP=2991;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,17:70:99:554,0,2174:32,21,14,3
chr2	96517474	.	G	A	223.1	PASS	AC=1;AF=0.5;AN=2;DP=3101;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,18:71:99:638,0,2168:32,21,15,3
chr2	96517484	.	T	G	369.98	PASS	AC=1;AF=0.5;AN=2;DP=3461;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,23:77:99:884,0,2234:30,24,18,5
chr2	96517502	.	A	C	489.21	PASS	AC=1;AF=0.5;AN=2;DP=4201;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,35:90:99:1298,0,2291:28,27,20,15
chr2	96517518	.	A	G	531.08	PASS	AC=1;AF=0.5;AN=2;DP=4830;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,42:98:99:1519,0,2165:27,29,26,16
chr2	96517641	.	C	T	1110.84	PASS	AC=1;AF=0.5;AN=2;DP=3146;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,29:62:99:1082,0,1572:10,23,11,18
chr2	96517642	.	A	G	398.93	PASS	AC=1;AF=0.5;AN=2;DP=3143;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,28:61:99:1082,0,1572:10,23,11,17
chr2	96517785	.	A	T	143.12	PASS	AC=1;AF=0.5;AN=2;DP=1335;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,5:22:76:76,0,531:15,2,3,2
chr2	96517824	.	C	T	1756.23	PASS	AC=1;AF=0.5;AN=2;DP=2883;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:460,0,551:17,8,13,6
chr2	96517882	.	G	A	1029.45	PASS	AC=1;AF=0.5;AN=2;DP=5192;set=variant-filterInvariant2-variant3-filterInvariant4-variant5-variant6-variant7-filterInvariant8-filterInvariant10-variant11-variant12-variant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant36-filterInvariant37-filterInvariant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:77,20:97:99:258,0,2871:40,37,8,12
chr2	96517885	.	G	A	1893.62	PASS	AC=1;AF=0.5;AN=2;DP=5733;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:32,67:99:99:2421,0,583:16,16,32,35
chr2	96517893	.	T	C	995.89	PASS	AC=1;AF=0.5;AN=2;DP=5682;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,32:103:99:663,0,2489:33,38,16,16
chr2	96517905	.	A	T	1043.23	PASS	AC=1;AF=0.5;AN=2;DP=5520;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,31:104:99:505,0,2024:32,41,15,16
chr2	96517957	.	ATT	A	859.2	PASS	AC=1;AF=0.5;AN=2;DP=3797;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,21:62:99:423,0,1531:15,26,6,15
chr2	96517960	.	T	A	2495.45	PASS	AC=1;AF=0.5;AN=2;DP=4421;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,21:62:99:444,0,1457:14,27,7,14
chr2	96518022	.	G	A	259.94	PASS	AC=1;AF=0.585;AN=2;DP=1099;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:141,0,446:5,10,0,5
chr2	96521138	.	T	C	3992.6	PASS	AC=1;AF=0.5;AN=2;DP=9226;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:99,80:179:99:2082,0,2406:58,41,56,24
chr2	96521220	.	G	A	971.32	PASS	AC=1;AF=0.5;AN=2;DP=19581;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:249,147:396:99:2718,0,6690:132,117,88,59
chr2	96521244	.	GTTTT	G	1994.87	PASS	AC=1;AF=0.5;AN=2;DP=17999;set=variant-filterInvariant2-variant3-variant4-filterInvariant6-variant8-variant9-variant10-filterInvariant11-variant12-variant13-filterInvariant14-filterInvariant15-variant16-variant17-filterInvariant18-variant19-variant20-variant22-variant23-variant24-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-variant33-variant34-variant35-variant36-variant40-filterInvariant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:401,52:453:99:721,0,17922:217,184,32,20
chr2	96521297	.	T	C	8779.58	PASS	AC=1;AF=0.5;AN=2;DP=20274;set=variant-filterInvariant2-filterInvariant3-variant4-filterInvariant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:150,255:405:99:6592,0,3398:74,76,132,123
chr2	96521324	.	A	G	10694.2	PASS	AC=1;AF=0.5;AN=2;DP=17852;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:143,203:346:99:7375,0,5542:67,76,106,97
chr2	96521334	.	T	C	1965.1	PASS	AC=1;AF=0.5;AN=2;DP=15910;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant14-variant15-variant16-filterInvariant18-variant19-filterInvariant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:209,128:337:99:2515,0,8788:106,103,70,58
chr2	96521336	.	T	C	10288.7	PASS	AC=1;AF=0.5;AN=2;DP=17180;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:149,184:333:99:7159,0,5749:70,79,102,82
chr2	96521406	.	C	T	4495.78	PASS	AC=1;AF=0.5;AN=2;DP=14488;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:130,152:282:99:4112,0,3401:68,62,88,64
chr2	96521438	.	A	G	4788.23	PASS	AC=1;AF=0.5;AN=2;DP=14884;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:144,142:286:99:3801,0,3948:82,62,81,61
chr2	96521455	.	A	G	5263.9	PASS	AC=1;AF=0.5;AN=2;DP=16664;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:166,157:323:99:4039,0,4748:97,69,85,72
chr2	96521477	.	A	AG	3187.63	PASS	AC=1;AF=0.5;AN=2;DP=19223;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:214,154:368:99:4261,0,8404:133,81,73,81
chr2	96521479	.	A	AAT,AT	4351.96	PASS	AC=0,1;AF=0.057,0.443;AN=2;DP=19680;set=Intersection	GT:DP:GQ:SB	0/2:347:99:103,67,86,91
chr2	96521482	.	ATGAG	AAG,A	4540.29	PASS	AC=1,0;AF=0.477,0.023;AN=2;DP=20603;set=Intersection	GT:DP:GQ:SB	0/1:394:99:107,72,103,112
chr2	96521486	.	G	A	3753.22	PASS	AC=1;AF=0.5;AN=2;DP=20360;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:197,200:397:99:6929,0,7578:119,78,98,102
chr2	96521512	.	A	C	8609.47	PASS	AC=1;AF=0.5;AN=2;DP=23974;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:198,283:481:99:7161,0,5060:121,77,121,162
chr2	96521548	.	G	A	10644.3	PASS	AC=1;AF=0.5;AN=2;DP=24943;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:253,232:485:99:8258,0,10106:141,112,88,144
chr2	96521556	.	T	C	10201.5	PASS	AC=1;AF=0.5;AN=2;DP=24673;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:265,219:484:99:8084,0,10601:147,118,82,137
chr2	96521563	.	G	A	5279.32	PASS	AC=1;AF=0.5;AN=2;DP=24321;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:274,210:484:99:7672,0,10646:151,123,80,130
chr2	96521607	.	G	C	5230.99	PASS	AC=1;AF=0.5;AN=2;DP=23105;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:350,164:514:99:5657,0,18737:176,174,54,110
chr2	96521608	.	G	A	5230.99	PASS	AC=1;AF=0.5;AN=2;DP=22920;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:350,160:510:99:5657,0,18737:177,173,52,108
chr2	96521609	.	T	C	5230.99	PASS	AC=1;AF=0.5;AN=2;DP=22870;set=variant-variant2-filterInvariant3-filterInvariant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:354,157:511:99:5657,0,18737:179,175,50,107
chr2	96521640	.	C	T	1576.27	PASS	AC=1;AF=0.5;AN=2;DP=8086;set=filterInvariant3-filterInvariant6-filterInvariant8-filterInvariant12-filterInvariant13-variant16-filterInvariant17-variant18-filterInvariant21-filterInvariant27-filterInvariant30-variant32-filterInvariant34-filterInvariant37-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:362,40:402:99:360,0,10319:171,191,4,36
chr2	96523006	.	A	C	40.7	PASS	AC=2;AF=0.767;AN=2;DP=763;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:1024,69,0:0,0,16,7
chr2	96523009	.	A	C	40.7	PASS	AC=2;AF=0.767;AN=2;DP=777;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:1024,69,0:0,0,16,7
chr2	96523047	.	A	G	73.02	PASS	AC=2;AF=0.75;AN=2;DP=1227;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:874,90,0:0,0,19,11
chr2	96523096	.	T	C	97.42	PASS	AC=1;AF=0.698;AN=2;DP=1601;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,14:37:99:345,0,505:12,11,4,10
chr2	96555463	.	C	T	593.43	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=3.227;FractionInformativeReads=1;MQ=55.99;MQRankSum=-0.851;QD=15.62;ReadPosRankSum=1.82;SOR=0.316;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:622,0,538:14,3,15,6
chr2	96557455	.	T	A	59.18	PASS	AC=1;AF=0.5;AN=2;DP=560;FractionInformativeReads=1;set=filterInvariant4-filterInvariant9-filterInvariant10-filterInvariant13-filterInvariant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:65,22:87:99:409,0,1795:34,31,12,10
chr2	96594697	.	G	C	154.85	PASS	AC=1;AF=0.5;AN=2;DP=1833;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,27:38:99:591,0,340:10,1,15,12
chr2	96594723	.	A	G	213.54	PASS	AC=1;AF=0.5;AN=2;DP=2131;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,25:46:99:872,0,849:15,6,14,11
chr2	96594735	.	C	T	130.8	PASS	AC=1;AF=0.5;AN=2;DP=2247;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:738,0,1074:19,7,10,10
chr2	96594742	.	C	T	115.79	PASS	AC=1;AF=0.5;AN=2;DP=2377;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,17:45:99:714,0,1119:19,9,8,9
chr2	96594759	.	G	A	104.11	PASS	AC=1;AF=0.5;AN=2;DP=2690;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-filterInvariant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,13:51:99:422,0,1682:26,12,7,6
chr2	96594777	.	C	T	70.37	PASS	AC=1;AF=0.5;AN=2;DP=2659;FractionInformativeReads=1;set=filterInvariant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-filterInvariant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant36-variant39-variant40-variant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:52,10:62:99:305,0,2038:34,18,5,5
chr2	96594791	.	A	G	345.6	PASS	AC=1;AF=0.5;AN=2;DP=2148;FractionInformativeReads=1;set=variant3-filterInvariant4-variant5-variant6-filterInvariant7-filterInvariant8-filterInvariant10-filterInvariant11-variant13-filterInvariant14-filterInvariant15-variant18-filterInvariant19-variant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-filterInvariant31-variant32-filterInvariant33-variant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:53,5:58:65:65,0,2295:35,18,2,3
chr2	96594802	.	A	T	73.55	PASS	AC=1;AF=0.5;AN=2;DP=1433;FractionInformativeReads=1;set=filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant11-variant13-filterInvariant15-filterInvariant19-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant29-filterInvariant32-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:61,7:68:81:81,0,2407:38,23,2,5
chr2	96594881	.	G	A	192.95	PASS	AC=1;AF=0.5;AN=2;DP=2242;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-variant5-variant6-variant8-variant11-variant12-filterInvariant13-filterInvariant15-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant28-filterInvariant29-variant31-variant32-variant33-filterInvariant34-filterInvariant37-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:71,6:77:64:64,0,3002:35,36,3,3
chr2	96594883	.	C	T	198.97	PASS	AC=1;AF=0.5;AN=2;DP=2226;FractionInformativeReads=1;set=variant-filterInvariant2-filterInvariant3-variant5-variant6-variant8-variant11-variant12-filterInvariant13-variant15-filterInvariant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant28-filterInvariant29-variant31-variant32-variant33-filterInvariant34-filterInvariant37-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:71,7:78:67:67,0,2960:35,36,4,3
chr2	96594906	.	G	GA	223.45	PASS	AC=1;AF=0.5;AN=2;DP=2692;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant8-variant10-variant11-variant12-filterInvariant13-variant15-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:59,7:66:99:110,0,2464:26,33,4,3
chr2	96594915	.	TAATC	T	223.25	PASS	AC=1;AF=0.5;AN=2;DP=2676;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-variant8-variant10-variant11-variant12-filterInvariant13-variant15-filterInvariant17-filterInvariant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:58,7:65:99:113,0,2434:24,34,4,3
chr2	96594924	.	T	C	241.31	PASS	AC=1;AF=0.5;AN=2;DP=2544;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-variant8-variant10-variant11-variant12-filterInvariant13-variant15-filterInvariant16-filterInvariant17-variant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-filterInvariant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,8:58:99:156,0,2201:19,31,4,4
chr2	96594966	.	T	G	310.9	PASS	AC=1;AF=0.5;AN=2;DP=2222;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,12:43:99:330,0,951:7,24,5,7
chr2	96595032	.	A	T	244.3	PASS	AC=1;AF=0.5;AN=2;DP=1652;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-variant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-variant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:232,0,415:3,12,3,6
chr2	96601236	.	G	A	38.41	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=178;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:32,7:39:75:75,0,1118:20,12,4,3
chr2	96601240	.	G	A	969.49	PASS	AC=1;AF=0.5;AN=2;DP=2675;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-variant30-variant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:654,0,384:10,7,15,8
chr2	96601296	.	A	ATGATTAAT	2297.79	PASS	AC=1;AF=0.5;AN=2;DP=4730;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:35,48:83:99:1952,0,1406:21,14,27,21
chr2	96601312	.	G	A	893.4	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=5297;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:68,26:94:99:402,0,1491:37,31,14,12
chr2	96601345	.	T	C,G	968.37	PASS	AC=1,0;AF=0.477,0.045;AN=2;DP=4777;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:74:99:21,18,17,18
chr2	96601364	.	C	T	556.89	PASS	AC=1;AF=0.5;AN=2;DP=4212;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:43,41:84:99:860,0,896:21,22,19,22
chr2	96601489	.	G	A	105.96	PASS	AC=1;AF=0.5;AN=2;DP=121;FractionInformativeReads=1;set=variant11-variant26-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,3:20:99:107,0,698:5,12,1,2
chr2	96601491	.	A	G	105.96	PASS	AC=1;AF=0.5;AN=2;DP=116;FractionInformativeReads=1;set=variant11-variant26-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,4:20:99:107,0,698:5,11,1,3
chr2	96601513	.	C	T	40.98	PASS	AC=1;AF=0.5;AN=2;DP=106;set=variant6-variant11-variant24-variant26-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:136,0,222:1,7,1,4
chr2	96601547	.	A	T	31.89	PASS	AC=1;AF=0.5;AN=2;DP=140;FractionInformativeReads=1;set=variant3-variant6-variant11-variant12-variant20-variant21-variant23-variant24-variant26-variant31-variant35-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:201,0,153:0,3,1,4
chr2	96601550	.	AAGGACCAAAT	A	67.63	PASS	AC=1;AF=0.5;AN=2;DP=113;FractionInformativeReads=1;set=variant6-variant11-variant12-variant21-variant23-variant24-variant26-variant31-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:99:201,0,153:0,3,1,4
chr2	96604473	.	T	A	719.46	PASS	AC=1;AF=0.5;AN=2;DP=2784;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-filterInvariant7-variant8-variant10-variant11-variant13-variant14-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant30-variant32-variant33-variant34-variant38-variant39-filterInvariant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:85,15:100:99:246,0,2878:75,10,13,2
chr2	96604516	.	C	T,A	4590.81	PASS	AC=1,0;AF=0.5,0.011;AN=2;DP=9502;set=Intersection	GT:DP:GQ:SB	0/1:193:99:29,11,106,47
chr2	96604591	.	A	G	7666.28	PASS	AC=1;AF=0.5;AN=2;DP=19381;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:100,290:390:99:8419,0,1748:53,47,137,153
chr2	96604606	.	C	A	1311.8	PASS	AC=1;AF=0.5;AN=2;DP=9708;set=variant2-variant3-variant5-variant7-variant9-variant11-variant12-variant14-filterInvariant19-variant22-filterInvariant23-filterInvariant24-filterInvariant26-variant27-variant30-filterInvariant31-variant35-variant36-filterInvariant38-filterInvariant39-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:298,83:381:99:1127,0,9142:137,161,37,46
chr2	96604632	.	A	T	6850.98	PASS	AC=1;AF=0.5;AN=2;DP=16994;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:109,233:342:99:6069,0,2081:50,59,93,140
chr2	96604675	.	T	C	497.03	PASS	AC=1;AF=0.5;AN=2;DP=4948;set=variant2-variant3-variant5-variant7-variant9-variant11-filterInvariant12-variant14-filterInvariant19-variant22-variant24-filterInvariant26-filterInvariant27-filterInvariant30-filterInvariant31-variant35-variant36-filterInvariant38-filterInvariant39-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:167,44:211:99:674,0,5783:60,107,15,29
chr2	96604679	.	C	T	3878.31	PASS	AC=1;AF=0.5;AN=2;DP=9345;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:83,110:193:99:3423,0,1830:33,50,34,76
chr2	96604730	.	T	C	714.98	PASS	AC=1;AF=0.5;AN=2;DP=2410;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,17:48:99:396,0,965:5,26,0,17
chr2	96604767	.	C	A	112.64	PASS	AC=1;AF=0.5;AN=2;DP=739;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,6:22:99:159,0,529:3,13,0,6
chr2	96610329	.	G	C	261.73	PASS	AC=1;AF=0.5;AN=2;DP=3626;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,20:85:99:260,0,1636:37,28,10,10
chr2	96610395	.	C	CA	873.71	PASS	AC=1;AF=0.5;AN=2;DP=5264;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:74,30:104:99:1032,0,3212:34,40,14,16
chr2	96610399	.	C	A	879.76	PASS	AC=1;AF=0.5;AN=2;DP=5267;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:75,30:105:99:1032,0,3212:35,40,14,16
chr2	96610410	.	T	A	885.77	PASS	AC=1;AF=0.5;AN=2;DP=5253;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:75,30:105:99:1031,0,3354:35,40,14,16
chr2	96610413	.	C	T	888.79	PASS	AC=1;AF=0.5;AN=2;DP=5235;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:76,30:106:99:1016,0,3485:37,39,14,16
chr2	96610420	.	G	T	903.83	PASS	AC=1;AF=0.5;AN=2;DP=5227;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:77,30:107:99:1019,0,3433:35,42,14,16
chr2	96610759	.	T	A	150.28	PASS	AC=1;AF=0.5;AN=2;DP=683;FractionInformativeReads=1;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,5:23:99:156,0,976:13,5,5,0
chr2	96610768	.	T	G	273.65	PASS	AC=1;AF=0.5;AN=2;DP=933;set=variant-variant2-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,8:28:99:244,0,1010:14,6,8,0
chr2	96610787	.	C	CA	1405.28	PASS	AC=1;AF=0.5;AN=2;DP=2312;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,17:48:99:698,0,1723:21,10,17,0
chr2	96610805	.	AAGAAAG	A	133.79	PASS	AC=1;AF=0.5;AN=2;DP=4591;set=filterInvariant-variant2-variant3-variant5-variant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-variant14-filterInvariant15-filterInvariant16-filterInvariant17-variant19-filterInvariant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-variant25-variant26-variant27-filterInvariant29-variant30-variant31-filterInvariant32-variant33-variant36-variant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,19:95:99:188,0,3329:57,19,16,3
chr2	96610836	.	T	C	6020.84	PASS	AC=1;AF=0.5;AN=2;DP=10747;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:74,111:185:99:3632,0,1815:46,28,79,32
chr2	96610899	.	T	C	13827.2	PASS	AC=1;AF=0.5;AN=2;DP=20014;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:101,241:342:99:9686,0,3533:56,45,140,101
chr2	96610921	.	T	G	14826.9	PASS	AC=1;AF=0.5;AN=2;DP=21280;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:107,261:368:99:10283,0,3530:57,50,140,121
chr2	96610923	.	C	G	1722.39	PASS	AC=1;AF=0.5;AN=2;DP=13955;set=variant-filterInvariant3-variant4-variant6-variant8-filterInvariant9-variant10-variant11-filterInvariant12-variant13-filterInvariant14-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant22-filterInvariant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant30-variant32-variant33-variant34-variant38-filterInvariant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:317,50:367:99:232,0,10123:168,149,27,23
chr2	96610952	.	T	C	9921.75	PASS	AC=1;AF=0.5;AN=2;DP=19242;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:89,236:325:99:6456,0,1689:40,49,114,122
chr2	96611018	.	G	A	5017.04	PASS	AC=1;AF=0.5;AN=2;DP=8528;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,110:151:99:3629,0,1008:9,32,30,80
chr2	96611078	.	T	G	2043.99	PASS	AC=1;AF=0.5;AN=2;DP=2927;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,36:53:99:1418,0,563:0,17,4,32
chr2	96611088	.	G	A	1792.3	PASS	AC=1;AF=0.5;AN=2;DP=2478;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,29:42:99:1185,0,452:1,12,3,26
chr2	96614383	.	A	G	468.55	PASS	AC=1;AF=0.5;AN=2;DP=2681;set=variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant8-filterInvariant9-filterInvariant10-variant12-variant13-filterInvariant15-filterInvariant17-filterInvariant18-variant20-variant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant28-variant29-variant31-filterInvariant32-filterInvariant35-filterInvariant36-variant38-variant39-filterInvariant40-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,13:76:83:83,0,1542:33,30,7,6
chr2	96614407	.	G	A	496.39	PASS	AC=1;AF=0.5;AN=2;DP=2672;set=variant2-filterInvariant3-variant4-variant5-filterInvariant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-variant12-variant13-variant15-filterInvariant18-variant20-variant21-filterInvariant22-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant28-variant29-variant31-filterInvariant32-filterInvariant35-filterInvariant36-filterInvariant37-variant38-variant39-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,14:79:99:99,0,1515:29,36,7,7
chr2	96614424	.	G	T	528.2	PASS	AC=1;AF=0.5;AN=2;DP=2637;set=variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-filterInvariant9-filterInvariant10-variant12-variant13-variant15-filterInvariant17-filterInvariant18-variant20-variant21-filterInvariant22-variant24-variant25-filterInvariant27-variant28-variant29-variant31-filterInvariant32-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-variant39-filterInvariant40-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,14:68:99:146,0,1357:21,33,7,7
chr2	96614434	.	A	AC	250.04	PASS	AC=1;AF=0.5;AN=2;DP=3018;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,14:66:99:431,0,2130:20,32,7,7
chr2	96614438	.	C	A	259.1	PASS	AC=1;AF=0.5;AN=2;DP=2990;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,14:65:99:435,0,1227:20,31,7,7
chr2	96616348	.	C	G	871.33	PASS	AC=1;AF=0.5;AN=2;DP=2197;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:839,0,1471:21,6,18,3
chr2	96616353	.	GT	G	223.14	PASS	AC=1;AF=0.5;AN=2;DP=2394;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,17:55:99:498,0,2006:31,7,13,4
chr2	96616354	.	T	C	433.13	PASS	AC=1;AF=0.5;AN=2;DP=2396;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,8:55:99:161,0,2300:36,11,8,0
chr2	96616355	.	T	C	232.18	PASS	AC=1;AF=0.5;AN=2;DP=2455;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,17:56:99:498,0,2006:32,7,13,4
chr2	96616378	.	C	T	1420.08	PASS	AC=1;AF=0.5;AN=2;DP=3987;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,28:69:99:1021,0,1889:29,12,22,6
chr2	96616442	.	C	A	2224.37	PASS	AC=1;AF=0.5;AN=2;DP=6541;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:68,63:131:99:2415,0,2583:36,32,28,35
chr2	96616448	.	G	T	2224.37	PASS	AC=1;AF=0.5;AN=2;DP=6535;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:68,62:130:99:2393,0,2598:35,33,27,35
chr2	96616485	.	C	G	1892.5	PASS	AC=1;AF=0.5;AN=2;DP=6060;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:64,54:118:99:1934,0,2300:29,35,19,35
chr2	96616501	.	C	CAA	1836.5	PASS	AC=1;AF=0.5;AN=2;DP=5439;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:55,48:103:99:1867,0,2162:24,31,14,34
chr2	96616505	.	AGC	A	1671.82	PASS	AC=1;AF=0.5;AN=2;DP=5086;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:54,43:97:99:1685,0,2135:23,31,10,33
chr2	96616532	.	T	G	1021.08	PASS	AC=1;AF=0.5;AN=2;DP=3677;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:44,32:76:99:1286,0,1789:17,27,6,26
chr2	96616571	.	C	A	208.25	PASS	AC=1;AF=0.5;AN=2;DP=1713;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,7:38:99:183,0,1260:9,22,0,7
chr2	96616576	.	T	C	178.4	PASS	AC=1;AF=0.5;AN=2;DP=1554;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:31,6:37:99:159,0,1284:9,22,0,6
chr2	96616580	.	A	G	181.41	PASS	AC=1;AF=0.5;AN=2;DP=1422;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,4:32:81:81,0,1206:9,19,0,4
chr2	96616654	.	C	A	124.68	PASS	AC=1;AF=0.5;AN=2;DP=385;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:256,0,357:2,7,3,4
chr2	96616667	.	A	C	127.69	PASS	AC=1;AF=0.5;AN=2;DP=351;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:256,0,357:2,7,3,4
chr2	96616892	.	A	G	85.7	PASS	AC=1;AF=0.5;AN=2;DP=192;FractionInformativeReads=1;set=variant-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant31-variant32-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,120:2,1,1,1
chr2	96616894	.	G	A	82.69	PASS	AC=1;AF=0.5;AN=2;DP=190;FractionInformativeReads=1;set=variant-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant26-variant27-variant28-variant31-variant32-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,120:2,1,1,1
chr2	96616904	.	C	T	33.17	PASS	AC=1;AF=0.5;AN=2;DP=76;FractionInformativeReads=1;set=variant5-variant15-variant27-variant31-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:69:69,0,196:2,1,1,1
chr2	96616911	.	C	G	79.68	PASS	AC=1;AF=0.5;AN=2;DP=220;FractionInformativeReads=1;set=variant-variant2-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant26-variant27-variant31-variant32-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,196:4,1,1,1
chr2	96616913	.	C	T	79.68	PASS	AC=1;AF=0.5;AN=2;DP=223;FractionInformativeReads=1;set=variant-variant2-variant5-variant6-variant7-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant24-variant26-variant27-variant31-variant32-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,196:4,1,1,1
chr2	96616947	.	G	A	269.1	PASS	AC=1;AF=0.5;AN=2;DP=304;FractionInformativeReads=1;set=variant2-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant34-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,2:9:63:63,0,288:5,2,2,0
chr2	96616951	.	A	G	289.63	PASS	AC=1;AF=0.5;AN=2;DP=343;FractionInformativeReads=1;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,2:9:60:60,0,330:5,2,2,0
chr2	96616957	.	A	G	115.65	PASS	AC=1;AF=0.5;AN=2;DP=383;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,2:10:60:60,0,330:6,2,2,0
chr2	96616967	.	G	C	115.65	PASS	AC=1;AF=0.5;AN=2;DP=432;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,2:10:60:60,0,330:6,2,2,0
chr2	96616997	.	T	G	184.36	PASS	AC=1;AF=0.5;AN=2;DP=819;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,4:19:99:99,0,564:13,2,3,1
chr2	96617023	.	C	A	772.3	PASS	AC=1;AF=0.5;AN=2;DP=1905;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:483,0,831:17,3,11,2
chr2	96617025	.	C	A	769.29	PASS	AC=1;AF=0.5;AN=2;DP=2072;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:553,0,846:17,4,11,2
chr2	96617039	.	A	AC	1339.89	PASS	AC=1;AF=0.5;AN=2;DP=844;set=variant3-variant9-variant10-variant15-variant18-variant19-variant21-variant25-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:605,0,902:21,4,20,4
chr2	96617069	.	A	G	1943.37	PASS	AC=1;AF=0.5;AN=2;DP=4560;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,50:92:99:2012,0,1652:30,12,39,11
chr2	96617090	.	A	G	2301.37	PASS	AC=1;AF=0.5;AN=2;DP=5770;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:59,61:120:99:2465,0,2330:38,21,45,16
chr2	96617106	.	A	C	2451.26	PASS	AC=1;AF=0.5;AN=2;DP=6278;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:68,64:132:99:2477,0,2747:40,28,44,20
chr2	96617111	.	G	A	2445.24	PASS	AC=1;AF=0.5;AN=2;DP=6470;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:72,65:137:99:2513,0,2828:39,33,44,21
chr2	96617113	.	G	A	2484.22	PASS	AC=1;AF=0.5;AN=2;DP=6524;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:72,65:137:99:2549,0,2909:39,33,44,21
chr2	96617125	.	T	C	2505.14	PASS	AC=1;AF=0.5;AN=2;DP=6851;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:72,68:140:99:2709,0,2855:39,33,44,24
chr2	96617132	.	T	C	2571.07	PASS	AC=1;AF=0.5;AN=2;DP=6999;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:73,70:143:99:2695,0,2897:39,34,44,26
chr2	96617155	.	A	G	2383.85	PASS	AC=1;AF=0.5;AN=2;DP=7215;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:77,72:149:99:2720,0,2859:39,38,40,32
chr2	96617182	.	A	C	58.9	PASS	AC=1;AF=0.5;AN=2;DP=3205;set=filterInvariant-variant6-variant8-variant10-variant13-filterInvariant14-variant16-variant17-filterInvariant18-filterInvariant19-variant20-filterInvariant23-filterInvariant24-variant25-filterInvariant26-variant28-variant32-filterInvariant34-filterInvariant38-filterInvariant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:136,21:157:99:175,0,5703:64,72,7,14
chr2	96617194	.	A	G	1819.3	PASS	AC=1;AF=0.5;AN=2;DP=6574;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:89,57:146:99:2098,0,4212:41,48,21,36
chr2	96617209	.	G	T	1631.36	PASS	AC=1;AF=0.5;AN=2;DP=5894;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:84,48:132:99:1779,0,4540:37,47,11,37
chr2	96617228	.	T	A	256.11	PASS	AC=1;AF=0.5;AN=2;DP=5083;set=filterInvariant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,22:110:99:443,0,5110:31,57,2,20
chr2	96617231	.	G	A	1156.27	PASS	AC=1;AF=0.5;AN=2;DP=4895;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:70,32:102:99:1160,0,4225:27,43,0,32
chr2	96617256	.	A	G	991.36	PASS	AC=1;AF=0.5;AN=2;DP=4015;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,24:77:99:839,0,3539:21,32,0,24
chr2	96617262	.	A	G	894.66	PASS	AC=1;AF=0.5;AN=2;DP=3727;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,24:72:99:860,0,3245:19,29,0,24
chr2	96617304	.	A	T	442.43	PASS	AC=1;AF=0.5;AN=2;DP=1687;set=variant-variant2-variant3-variant5-filterInvariant6-variant7-variant8-variant9-variant10-filterInvariant12-variant13-filterInvariant14-variant15-variant16-filterInvariant18-filterInvariant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant35-variant37-variant38-filterInvariant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,11:40:99:346,0,2390:8,21,0,11
chr2	96617323	.	G	C	310.41	PASS	AC=1;AF=0.5;AN=2;DP=848;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant6-variant7-variant8-variant9-variant10-filterInvariant12-variant13-variant15-variant16-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,5:27:99:135,0,2304:4,18,0,5
chr2	96617324	.	G	A	271.41	PASS	AC=1;AF=0.5;AN=2;DP=832;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-variant6-variant7-variant8-variant9-variant10-filterInvariant12-variant13-variant15-variant16-variant21-filterInvariant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,5:27:99:138,0,2262:4,18,0,5
chr2	96617344	.	T	G	49.57	PASS	AC=1;AF=0.5;AN=2;DP=181;FractionInformativeReads=1;set=variant6-filterInvariant10-variant21-filterInvariant26-variant29-filterInvariant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,4:19:99:120,0,1628:1,14,0,4
chr2	96619641	.	A	C	322.58	PASS	AC=1;AF=0.5;AN=2;DP=1088;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:193,0,668:12,0,6,0
chr2	96619642	.	A	T	322.58	PASS	AC=1;AF=0.5;AN=2;DP=1115;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:228,0,665:12,0,6,0
chr2	96619687	.	C	T	31.15	PASS	AC=1;AF=0.5;AN=2;DP=773;set=filterInvariant-variant13-filterInvariant18-variant19-variant24-variant32-variant34-variant38-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:78,8:86:60:60,0,2998:63,15,8,0
chr2	96619688	.	T	G	1326.56	PASS	AC=1;AF=0.5;AN=2;DP=4300;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,44:87:99:1144,0,1294:37,6,35,9
chr2	96619713	.	C	A	76.61	PASS	AC=1;AF=0.5;AN=2;DP=705;set=filterInvariant16-filterInvariant18-variant19-variant38-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:106,15:121:99:105,0,3875:74,32,12,3
chr2	96619734	.	C	T	2545.12	PASS	AC=1;AF=0.5;AN=2;DP=9351;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:74,89:163:99:2399,0,1853:47,27,59,30
chr2	96619774	.	G	A	3994.44	PASS	AC=1;AF=0.5;AN=2;DP=13083;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:116,115:231:99:3797,0,2736:66,50,66,49
chr2	96619799	.	A	C	4041.73	PASS	AC=1;AF=0.5;AN=2;DP=14181;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:124,130:254:99:3513,0,2949:64,60,65,65
chr2	96619831	.	T	C	2442.43	PASS	AC=1;AF=0.5;AN=2;DP=13007;set=variant-variant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:124,106:230:99:3254,0,4745:52,72,43,63
chr2	96619832	.	A	G,T	2151.94	PASS	AC=1,0;AF=0.419,0.081;AN=2;DP=12510;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:209:99:51,66,38,54
chr2	96619837	.	C	G	4169.79	PASS	AC=1;AF=0.5;AN=2;DP=12243;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:113,103:216:99:4326,0,4434:48,65,40,63
chr2	96619838	.	A	C	4088.82	PASS	AC=1;AF=0.5;AN=2;DP=12153;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:113,102:215:99:4191,0,4441:47,66,39,63
chr2	96619849	.	A	T,C	99.73	PASS	AC=0,1;AF=0.263,0.237;AN=2;DP=5004;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant6-filterInvariant8-variant10-filterInvariant11-variant13-variant16-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant32-filterInvariant34-filterInvariant38-filterInvariant41	GT:DP:GQ:SB	0/2:198:99:68,103,8,19
chr2	96619853	.	T	C	1451.23	PASS	AC=1;AF=0.5;AN=2;DP=10256;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,35:196:99:798,0,4909:64,97,11,24
chr2	96619873	.	C	A	907.77	PASS	AC=1;AF=0.5;AN=2;DP=8150;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,27:162:99:565,0,4340:50,85,10,17
chr2	96619896	.	A	G	472.99	PASS	AC=1;AF=0.5;AN=2;DP=692;set=variant9-variant12-variant30-variant35-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:96,15:111:63:63,0,3044:31,65,3,12
chr2	96626292	.	C	T	452.58	PASS	AC=2;AF=0.955;AN=2;DP=1013;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:598,48,0:0,0,2,14
chr2	96652816	.	CAA	C	986.44	PASS	AC=2;AF=0.909;AN=2;DP=532;set=variant3-variant4-variant5-variant10-filterInvariant12-filterInvariant16-variant19-variant21-variant26-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:801,54,0:0,0,6,12
chr2	96684876	.	A	G	607.65	PASS	AC=2;AF=0.955;AN=2;DP=2819;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2160,213,0:0,0,35,36
chr2	96687426	.	CT	C	286.61	PASS	AC=2;AF=0.779;AN=2;DP=1647;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1584,110,0:0,0,12,25
chr2	96687428	.	GC	G	286.64	PASS	AC=2;AF=0.779;AN=2;DP=1593;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1584,110,0:0,0,12,25
chr2	96698185	.	G	A	372.78	PASS	AC=2;AF=0.813;AN=2;DP=666;FractionInformativeReads=1;set=variant2-variant3-variant5-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant21-variant24-variant27-filterInvariant28-variant31-variant32-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:790,81,0:0,0,8,19
chr2	96778665	.	T	TA,TAA	653.12	PASS	AC=1,0;AF=0.6,0.025;AN=2;DP=1756;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:32:20:3,2,16,11
chr2	96780716	.	T	G	7471.45	PASS	AC=2;AF=0.825;AN=2;DP=13670;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,316:316:99:9558,947,0:0,0,180,136
chr2	96780986	.	C	CTCCTCCTCT	8025.12	PASS	AC=2;AF=0.825;AN=2;DP=10009;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,210:210:99:9991,692,0:0,0,109,101
chr2	96781986	.	G	C	1639.51	PASS	AC=2;AF=0.825;AN=2;DP=1830;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1470,117,0:0,0,8,31
chr2	96795857	.	T	C	2568.51	PASS	AC=2;AF=0.817;AN=2;DP=4096;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2790,272,0:0,0,41,50
chr2	96795944	.	A	G	1226.38	PASS	AC=1;AF=0.604;AN=2;DP=1197;MQ=60;set=variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant19-variant20-variant22-variant23-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,34:50:99:870,0,456:5,11,15,19
chr2	96798440	.	C	T	1759.32	PASS	AC=1;AF=0.5;AN=2;DP=266;FractionInformativeReads=1;MQ=60;set=variant3-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,44:107:99:980,0,1644:31,32,20,24
chr2	96809331	.	T	C	1006.59	PASS	AC=1;AF=0.694;AN=2;DP=3715;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,51:115:99:1159,0,1501:31,33,24,27
chr2	96851119	.	C	A	1811.1	PASS	AC=2;AF=0.78;AN=2;DP=9437;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,200:201:99:6080,571,0:1,0,109,91
chr2	96931151	.	G	C	1523.91	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=7.449;FractionInformativeReads=1;MQ=60;MQRankSum=-0.179;QD=13.98;ReadPosRankSum=3.319;SOR=0.692;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,58:109:99:1552,0,1293:30,21,26,32
chr2	96934504	.	T	C	327.73	PASS	AC=1;AF=0.655;AN=2;DP=814;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:493,0,480:2,11,4,11
chr2	96937296	.	G	C	1555.93	PASS	AC=1;AF=0.655;AN=2;DP=3496;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,50:103:99:1267,0,1367:30,23,28,22
chr2	96943473	.	T	C	530.56	PASS	AC=1;AF=0.655;AN=2;DP=2086;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,35:64:99:1100,0,800:18,11,19,16
chr2	96950487	.	CT	CTT,C	227.03	PASS	AC=1,0;AF=0.607,0.018;AN=2;DP=909;MQ=60;set=variant-filterInvariant3-variant5-variant8-filterInvariant9-variant10-filterInvariant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:21:99:0,9,5,7
chr2	96952833	.	A	G	1773.27	PASS	AC=1;AF=0.635;AN=2;DP=4858;MQ=60;set=variant-variant2-variant3-variant5-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,82:183:99:2148,0,2447:44,57,34,48
chr2	96955480	.	T	C	1650.53	PASS	AC=1;AF=0.655;AN=2;DP=3066;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,46:91:99:1193,0,1159:27,18,28,18
chr2	96956315	.	T	G	2070.12	PASS	AC=2;AF=0.989;AN=2;DP=3297;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2442,227,0:0,0,35,41
chr2	96962859	.	A	G	268.82	PASS	AC=1;AF=0.655;AN=2;DP=974;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:476,0,405:4,10,8,11
chr2	96966661	.	G	C	743.28	PASS	AC=1;AF=0.655;AN=2;DP=1123;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,11:38:99:256,0,692:17,10,8,3
chr2	96971355	.	T	C	184.81	PASS	AC=1;AF=0.655;AN=2;DP=1011;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:329,0,401:5,9,5,9
chr2	96971409	.	A	G	121.97	PASS	AC=1;AF=0.667;AN=2;DP=388;MQ=60;set=variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:279,0,218:2,4,2,7
chr2	96991492	.	A	G	583.6	PASS	AC=1;AF=0.744;AN=2;DP=5147;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,75:122:99:1956,0,1063:29,18,42,33
chr2	96993757	.	C	T	1393.88	PASS	AC=1;AF=0.648;AN=2;DP=5087;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,105:210:99:2704,0,2692:57,48,53,52
chr2	96993884	.	A	G	1677.29	PASS	AC=1;AF=0.667;AN=2;DP=4322;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,84:162:99:2280,0,2009:30,48,39,45
chr2	96994224	.	G	A	267.67	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=4.129;FractionInformativeReads=1;MQ=60;MQRankSum=-0.927;QD=11.15;ReadPosRankSum=0.463;SOR=0.184;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:296,0,350:2,9,5,8
chr2	97020049	.	T	C	1568.51	PASS	AC=2;AF=0.667;AN=2;DP=3674;MQ=60;set=variant-variant2-variant3-variant5-variant10-variant13-variant14-variant17-variant18-variant20-variant21-variant24-variant25-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4419,460,0:0,0,65,89
chr2	97026576	.	C	T	261.77	PASS	AC=2;AF=0.685;AN=2;DP=528;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:595,45,0:0,0,0,15
chr2	97030247	.	T	C	831.58	PASS	AC=2;AF=0.685;AN=2;DP=1652;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant11-variant13-variant14-variant17-variant18-variant20-variant21-variant24-variant25-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1567,155,0:0,0,30,22
chr2	97203224	.	T	C	3968.43	PASS	AC=2;AF=0.953;AN=2;DP=3899;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2747,276,0:0,0,41,51
chr2	97270095	.	C	T	858.28	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=0.881;FractionInformativeReads=1;MQ=60;MQRankSum=-1.85;QD=11.76;ReadPosRankSum=-0.491;SOR=0.557;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,35:73:99:887,0,1054:17,21,17,18
chr2	97277899	.	G	C	287.8	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.366;QD=10.66;ReadPosRankSum=1.635;SOR=0.465;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:316,0,471:12,3,9,3
chr2	97284917	.	G	A	781.77	PASS	AC=1;AF=0.611;AN=2;DP=1815;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,27:60:99:764,0,933:23,10,21,6
chr2	97315570	.	C	T	589.98	PASS	AC=2;AF=0.607;AN=2;DP=640;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:660,57,0:0,0,5,14
chr2	97319534	.	G	C	76.7	PASS	AC=2;AF=0.607;AN=2;DP=315;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:407,36,0:0,0,3,9
chr2	97351840	.	A	G	2933.29	PASS	AC=1;AF=0.607;AN=2;DP=4895;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant12-variant13-variant16-variant17-variant20-variant21-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:79,81:160:99:1934,0,1939:37,42,36,45
chr2	97353460	.	G	GGGGAA	672.52	PASS	AC=1;AF=0.556;AN=2;DP=290;MQ=60;set=variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:584,0,871:14,1,11,3
chr2	97357108	.	G	A	1768.04	PASS	AC=1;AF=0.5;AN=2;DP=1337;MQ=60;set=variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,80:154:99:2318,0,2022:35,39,38,42
chr2	97357756	.	CG	C,CGG	84.52	PASS	AC=0,1;AF=0.432,0.068;AN=2;DP=696;MQ=60;set=variant3-variant4-variant5-variant6-filterInvariant8-variant9-variant10-variant12-variant16-variant17-filterInvariant18-variant19-filterInvariant24-variant26-variant27-variant29-variant30-variant32-filterInvariant36-variant39-variant40-variant41	GT:DP:GQ:SB	0/2:7:27:2,1,3,1
chr2	97359236	.	C	A	235.42	PASS	AC=1;AF=0.5;AN=2;DP=194;MQ=60;set=variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:459,0,436:12,6,13,7
chr2	97359364	.	A	G	450.63	PASS	AC=1;AF=0.556;AN=2;DP=566;MQ=60;set=variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:42,34:76:99:832,0,1038:25,17,17,17
chr2	97366088	.	T	C	1214.78	PASS	AC=1;AF=0.5;AN=2;DP=1161;MQ=60;set=variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:71,56:127:99:1301,0,1505:38,33,31,25
chr2	97377883	.	C	T	503.27	PASS	AC=1;AF=0.5;AN=2;DP=499;FractionInformativeReads=1;MQ=60;set=variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,30:60:99:831,0,797:10,20,9,21
chr2	97399096	.	C	T	810.84	PASS	AC=1;AF=0.5;AN=2;DP=413;FractionInformativeReads=1;MQ=60;set=variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,30:57:99:1150,0,1838:21,6,18,12
chr2	97399100	.	T	C	817.81	PASS	AC=1;AF=0.5;AN=2;DP=431;FractionInformativeReads=1;MQ=60;set=variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:28,29:57:99:1150,0,1838:21,7,17,12
chr2	97400324	.	A	G	2475.21	PASS	AC=1;AF=0.596;AN=2;DP=2483;set=variant-variant3-variant6-variant7-variant8-variant9-variant12-variant13-variant16-variant17-variant21-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,44:107:99:1066,0,1648:26,37,20,24
chr2	97405755	.	A	T	1178.44	PASS	AC=1;AF=0.5;AN=2;DP=97;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.925;QD=12.15;ReadPosRankSum=1.022;SOR=0.641;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,51:97:99:1207,0,1055:21,25,24,27
chr2	97405866	.	T	C	153.39	PASS	AC=1;AF=0.556;AN=2;DP=200;FractionInformativeReads=1;MQ=60;set=variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:486,0,368:2,11,7,11
chr2	97405896	.	A	G	143.97	PASS	AC=1;AF=0.5;AN=2;DP=133;FractionInformativeReads=1;MQ=60;set=variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,16:25:99:470,0,283:1,8,5,11
chr2	97463095	.	T	C	303.12	PASS	AC=1;AF=0.596;AN=2;DP=503;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant12-variant13-variant16-variant17-variant21-variant23-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:171,0,264:7,0,3,2
chr2	97464057	.	C	T	417.57	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.771;QD=10.18;ReadPosRankSum=-0.327;SOR=0.853;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:446,0,488:9,13,7,12
chr2	97476219	.	A	G	1643.89	PASS	AC=1;AF=0.5;AN=2;DP=1127;MQ=60;set=variant3-variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,60:133:99:1533,0,1769:37,36,30,30
chr2	97477374	.	C	T	1114.88	PASS	AC=1;AF=0.55;AN=2;DP=652;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,40:73:99:1116,0,1014:23,10,22,18
chr2	97492479	.	G	A	212.68	PASS	AC=1;AF=0.5;AN=2;DP=141;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:196,0,343:9,3,6,1
chr2	97493877	.	T	C	1609.75	PASS	AC=1;AF=0.6;AN=2;DP=1411;MQ=60;set=variant3-variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:67,78:145:99:2002,0,1628:27,40,33,45
chr2	97498481	.	T	A	1052.13	PASS	AC=1;AF=0.55;AN=2;DP=525;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,33:56:99:909,0,624:13,10,20,13
chr2	97499144	.	T	TC	2280.18	PASS	AC=1;AF=0.5;AN=2;DP=1271;MQ=60;set=variant3-variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:70,69:139:99:2012,0,2081:28,42,33,36
chr2	97504863	.	C	G	1905.4	PASS	AC=1;AF=0.55;AN=2;DP=1395;MQ=60;set=variant3-variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:73,56:129:99:1497,0,1960:33,40,32,24
chr2	97507727	.	T	C	147.37	PASS	AC=1;AF=0.55;AN=2;DP=176;FractionInformativeReads=1;MQ=60;set=variant3-variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,4:18:85:85,0,392:10,4,3,1
chr2	97508320	.	G	C	795.49	PASS	AC=1;AF=0.55;AN=2;DP=628;MQ=60;set=variant3-variant9-variant30-variant31-variant34-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,23:55:99:524,0,828:15,17,11,12
chr2	97529360	.	T	A	726.91	PASS	AC=1;AF=0.548;AN=2;DP=1691;MQ=60;set=variant2-variant3-variant5-variant7-variant9-variant15-variant18-variant20-variant21-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,44:73:99:1175,0,694:19,10,25,19
chr2	97529396	.	G	A	1593.46	PASS	AC=1;AF=0.5;AN=2;DP=306;FractionInformativeReads=1;MQ=60;set=variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,46:98:99:1241,0,1343:30,22,29,17
chr2	97543936	.	T	C	185.85	PASS	AC=2;AF=0.545;AN=2;DP=440;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant7-variant9-variant13-variant15-variant18-variant21-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1373,114,0:0,0,18,20
chr2	97543970	.	C	T	76.63	PASS	AC=1;AF=0.5;AN=2;DP=51;FractionInformativeReads=1;MQ=60;set=variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:499,0,305:8,3,9,7
chr2	97544089	.	G	C	773.96	PASS	AC=1;AF=0.525;AN=2;DP=1503;MQ=60;set=variant2-variant3-variant7-variant9-variant13-variant15-variant18-variant21-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,25:66:99:578,0,988:22,19,13,12
chr2	97559759	.	G	A	1260.75	PASS	AC=1;AF=0.5;AN=2;DP=1785;MQ=60;set=variant2-variant15-variant18-variant21-variant24-variant25-variant32-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,49:103:99:1251,0,1436:24,30,25,24
chr2	97560801	.	G	A	2210.05	PASS	AC=1;AF=0.5;AN=2;DP=921;MQ=60;set=variant4-variant5-variant10-variant16-variant17-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,56:104:99:1271,0,1167:28,20,30,26
chr2	97560913	.	C	T	773.17	PASS	AC=1;AF=0.5;AN=2;DP=1120;MQ=60;set=variant2-variant15-variant18-variant21-variant24-variant25-variant32-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,47:76:99:1290,0,904:9,20,19,28
chr2	97561006	.	TTCCTTATCATCA	T	670.4	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.195;QD=13.68;ReadPosRankSum=0.4;SOR=0.73;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,19:49:99:708,0,3958:13,17,8,11
chr2	97563745	.	T	C	546.81	PASS	AC=2;AF=0.538;AN=2;DP=1588;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1321,120,0:0,0,23,17
chr2	97568071	.	G	A	206.96	PASS	AC=1;AF=0.5;AN=2;DP=76;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant10-variant16-variant17-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:82,0,34:1,0,2,1
chr2	97568453	.	A	G	817.22	PASS	AC=1;AF=0.563;AN=2;DP=1051;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant23-variant30-variant31-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:31,35:66:99:797,0,750:14,17,18,17
chr2	97587049	.	T	C	1880.1	PASS	AC=1;AF=0.818;AN=2;DP=2904;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:51,25:76:99:669,0,1424:23,28,9,16
chr2	97594806	.	G	A	42.23	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.322;QD=5.28;ReadPosRankSum=1.221;SOR=1.034;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:70:70,0,121:3,2,1,2
chr2	97595109	.	T	C	631.58	PASS	AC=1;AF=0.852;AN=2;DP=1987;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:614,0,711:10,15,11,15
chr2	97613616	.	T	C	799.72	PASS	AC=2;AF=0.864;AN=2;DP=1772;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:691,66,0:0,0,13,9
chr2	97613657	.	AC	A	244.5	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=1.657;FractionInformativeReads=1;MQ=60;MQRankSum=0.583;QD=9.4;ReadPosRankSum=-0.472;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:282,0,691:9,9,5,3
chr2	97613748	.	C	A	567.65	PASS	AC=1;AF=0.852;AN=2;DP=1052;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:269,0,246:5,6,6,6
chr2	97617140	.	T	C	6736.53	PASS	AC=2;AF=0.864;AN=2;DP=10243;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,230:231:99:7218,682,0:1,0,137,93
chr2	97617227	.	A	G	5472.07	PASS	AC=2;AF=0.864;AN=2;DP=8303;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:5453,524,0:0,0,79,96
chr2	97633013	.	A	G	154.82	PASS	AC=2;AF=0.95;AN=2;DP=238;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:411,33,0:0,0,9,2
chr2	97633267	.	G	C	1141.08	PASS	AC=1;AF=0.5;AN=2;DP=1223;MQ=60;set=variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant18-variant25-variant30-variant31-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,36:81:99:792,0,1156:21,24,16,20
chr2	97637516	.	T	C	763.98	PASS	AC=1;AF=0.92;AN=2;DP=1575;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,24:38:99:717,0,340:10,4,16,8
chr2	97637905	.	T	C	7470.91	PASS	AC=1;AF=0.92;AN=2;DP=9469;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:101,81:182:99:1750,0,2468:49,52,41,40
chr2	97638038	.	A	G	3403.48	PASS	AC=1;AF=0.92;AN=2;DP=3721;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,38:94:99:1086,0,1554:21,35,15,23
chr2	97695036	.	C	A	1271.45	PASS	AC=1;AF=0.5;AN=2;DP=1248;FractionInformativeReads=1;set=variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant18-variant25-variant30-variant31-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,25:71:99:485,0,1181:25,21,11,14
chr2	97747894	.	T	C	340.68	PASS	AC=2;AF=0.932;AN=2;DP=1841;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1012,99,0:0,0,13,20
chr2	97752054	.	T	C	177.14	PASS	AC=1;AF=0.5;AN=2;DP=545;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant18-variant25-variant30-variant31-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:708,0,428:7,11,7,17
chr2	97757067	.	C	T	65.04	PASS	AC=1;AF=0.972;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQRankSum=-1.881;ReadPosRankSum=1.159;set=filterInvariant6-filterInvariant8-variant10-filterInvariant11-filterInvariant12-filterInvariant14-filterInvariant15-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant28-filterInvariant31-filterInvariant33-variant36-variant41-variant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:82:82,0,118:2,3,2,2
chr2	97757347	.	G	A	1792.97	PASS	AC=1;AF=0.5;AN=2;DP=1572;set=variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant18-variant25-variant30-variant31-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:71,48:119:99:1172,0,1923:37,34,29,19
chr2	97783831	.	C	T	1408.47	PASS	AC=1;AF=0.5;AN=2;DP=2152;set=variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant18-variant25-variant30-variant31-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:70,54:124:99:1287,0,1822:49,21,41,13
chr2	97808394	.	C	G	46.1	PASS	AC=1;AF=0.5;AN=2;DP=3024;set=filterInvariant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-filterInvariant16-variant17-variant18-filterInvariant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:63,17:80:99:225,0,1721:37,26,6,11
chr2	97817393	.	A	T	682.83	PASS	AC=1;AF=0.5;AN=2;DP=1592;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,24:35:99:1014,0,402:10,1,23,1
chr2	97817394	.	T	G	682.83	PASS	AC=1;AF=0.5;AN=2;DP=1645;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,26:38:99:1014,0,402:11,1,25,1
chr2	97817420	.	G	A	2314.15	PASS	AC=1;AF=0.5;AN=2;DP=3471;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:20,48:68:99:1994,0,716:18,2,37,11
chr2	97817429	.	A	C	2560.07	PASS	AC=1;AF=0.5;AN=2;DP=3917;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,53:78:99:2150,0,890:18,7,40,13
chr2	97817449	.	C	T	2841.67	PASS	AC=1;AF=0.5;AN=2;DP=4603;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,62:88:99:2525,0,905:18,8,40,22
chr2	97817450	.	C	G	2841.67	PASS	AC=1;AF=0.5;AN=2;DP=4627;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,62:88:99:2522,0,927:18,8,40,22
chr2	97817469	.	T	A	2883.63	PASS	AC=1;AF=0.5;AN=2;DP=4996;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:30,63:93:99:2457,0,1024:19,11,36,27
chr2	97817511	.	T	C	1701.54	PASS	AC=1;AF=0.5;AN=2;DP=5447;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:35,66:101:99:1464,0,809:23,12,34,32
chr2	97817545	.	A	T	420.28	PASS	AC=1;AF=0.5;AN=2;DP=4798;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,29:78:99:632,0,1723:26,23,11,18
chr2	97817563	.	C	CA	1122.57	PASS	AC=1;AF=0.5;AN=2;DP=3477;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,33:67:99:1208,0,1245:22,12,7,26
chr2	97817564	.	C	CT,T	3001.82	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=3275;FS=0;set=Intersection	GT:DP:GQ:SB	2/1:61:99:0,0,27,34
chr2	97817578	.	T	C	493.2	PASS	AC=1;AF=0.5;AN=2;DP=3041;set=variant-variant2-filterInvariant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:34,16:50:99:561,0,1407:22,12,0,16
chr2	97818146	.	G	A	304.52	PASS	AC=1;AF=0.5;AN=2;DP=921;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:99:138,0,408:7,2,0,3
chr2	97818161	.	C	A	328.45	PASS	AC=1;AF=0.5;AN=2;DP=1203;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:213,0,528:9,3,2,4
chr2	97818169	.	C	T	325.44	PASS	AC=1;AF=0.5;AN=2;DP=1385;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:336,0,561:10,3,3,6
chr2	97818188	.	T	C	319.42	PASS	AC=1;AF=0.5;AN=2;DP=1776;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:501,0,669:9,4,5,8
chr2	97818192	.	A	G	322.43	PASS	AC=1;AF=0.5;AN=2;DP=1865;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:495,0,757:11,4,5,8
chr2	97818197	.	G	T	319.43	PASS	AC=1;AF=0.5;AN=2;DP=1950;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:498,0,715:11,5,5,8
chr2	97818236	.	A	C	263.04	PASS	AC=1;AF=0.5;AN=2;DP=2600;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,13:46:99:444,0,1533:22,11,5,8
chr2	97818260	.	GGC	G	217.22	PASS	AC=1;AF=0.5;AN=2;DP=2920;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,13:63:99:392,0,2247:29,21,5,8
chr2	97818264	.	G	GTT	208.22	PASS	AC=1;AF=0.5;AN=2;DP=2925;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,13:64:99:392,0,2247:29,22,5,8
chr2	97818283	.	G	C	34.35	PASS	AC=1;AF=0.5;AN=2;DP=3023;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant14-variant15-variant16-variant17-variant18-filterInvariant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,11:71:99:281,0,2496:34,26,5,6
chr2	97827737	.	C	T	448.77	PASS	AC=1;AF=0.5;AN=2;DP=528;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-filterInvariant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:468,0,468:8,4,7,5
chr2	97827757	.	A	G	571.7	PASS	AC=1;AF=0.5;AN=2;DP=734;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:521,0,566:10,6,8,7
chr2	97827787	.	G	A	985.39	PASS	AC=1;AF=0.5;AN=2;DP=1045;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:756,0,822:12,9,10,9
chr2	97827790	.	T	C	101.33	PASS	AC=1;AF=0.5;AN=2;DP=240;set=variant4-variant9-variant10-variant13-variant23-variant25-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,21:41:99:468,0,778:10,10,12,9
chr2	97827800	.	A	G	1028.85	PASS	AC=1;AF=0.5;AN=2;DP=1066;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,20:42:99:753,0,843:12,10,10,10
chr2	97827839	.	G	A	768.59	PASS	AC=1;AF=0.5;AN=2;DP=1005;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:682,0,543:12,13,9,10
chr2	97828929	.	A	G	431.68	PASS	AC=2;AF=0.733;AN=2;DP=672;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:431,36,0:0,0,8,4
chr2	97828982	.	C	T	587.92	PASS	AC=1;AF=0.534;AN=2;DP=1200;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:236,0,129:4,1,6,4
chr2	97829003	.	CAAAAATAA	C	809.79	PASS	AC=1;AF=0.5;AN=2;DP=1461;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:264,0,395:10,0,4,3
chr2	97829029	.	G	A	722.49	PASS	AC=1;AF=0.5;AN=2;DP=1596;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,8:30:99:267,0,895:16,6,3,5
chr2	97829030	.	T	G	722.49	PASS	AC=1;AF=0.5;AN=2;DP=1604;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,8:31:99:267,0,895:16,7,3,5
chr2	97830036	.	G	A	50.44	PASS	AC=1;AF=0.5;AN=2;DP=77;FractionInformativeReads=1;set=filterInvariant15-variant38-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:19,6:25:73:73,0,627:17,2,3,3
chr2	97830053	.	A	G	75.77	PASS	AC=1;AF=0.5;AN=2;DP=1896;set=filterInvariant-variant2-filterInvariant3-variant4-variant5-filterInvariant6-variant7-variant8-filterInvariant9-variant11-filterInvariant12-variant13-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,10:40:99:128,0,1042:27,3,5,5
chr2	97833159	.	T	A	105.87	PASS	AC=1;AF=0.5;AN=2;DP=723;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-variant20-filterInvariant21-variant22-filterInvariant23-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:384,0,209:7,0,10,1
chr2	97833193	.	G	A	423.98	PASS	AC=1;AF=0.5;AN=2;DP=1938;set=filterInvariant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-variant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-variant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-filterInvariant35-filterInvariant36-variant37-filterInvariant38-variant39-variant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:16,31:47:99:906,0,439:13,3,20,11
chr2	97833199	.	A	T	132.11	PASS	AC=1;AF=0.5;AN=2;DP=1137;set=filterInvariant2-variant3-filterInvariant5-filterInvariant7-variant9-filterInvariant11-variant12-filterInvariant14-filterInvariant16-filterInvariant19-variant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant36-variant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:39,11:50:99:147,0,1196:27,12,7,4
chr2	97833215	.	T	C	1435.66	PASS	AC=1;AF=0.5;AN=2;DP=3179;set=filterInvariant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:20,44:64:99:1786,0,704:14,6,26,18
chr2	97833217	.	C	T	1435.66	PASS	AC=1;AF=0.5;AN=2;DP=3306;set=filterInvariant-filterInvariant2-variant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-variant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:20,45:65:99:1786,0,704:14,6,26,19
chr2	97833273	.	G	A	85.24	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=92;FS=0;FractionInformativeReads=1;MQ=29.19;MQRankSum=-0.266;QD=0.93;ReadPosRankSum=-0.886;SOR=0.693;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:78,14:92:99:113,0,1913:39,39,7,7
chr2	97833342	.	G	A	546.62	PASS	AC=1;AF=0.5;AN=2;DP=3997;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:754,0,863:19,17,13,23
chr2	97833361	.	A	G,C	84.78	PASS	AC=1,0;AF=0.488,0.012;AN=2;DP=2981;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:52:99:23,20,2,7
chr2	97833553	.	C	T	218.8	PASS	AC=1;AF=0.511;AN=2;DP=722;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:108,0,160:0,5,2,3
chr2	97833567	.	A	G	214.68	PASS	AC=1;AF=0.512;AN=2;DP=674;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:195,0,319:0,5,1,4
chr2	97833569	.	C	T	214.68	PASS	AC=1;AF=0.523;AN=2;DP=694;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:195,0,319:0,5,1,4
chr2	97833583	.	C	T	223.72	PASS	AC=1;AF=0.523;AN=2;DP=668;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:140,0,164:0,5,1,4
chr2	97845612	.	C	G	63.58	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=293;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:64,6:70:59:59,0,3900:34,30,3,3
chr2	97845616	.	G	T	60.57	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=295;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:63,6:69:62:62,0,3858:34,29,3,3
chr2	97860529	.	G	A	1220.66	PASS	AC=1;AF=0.5;AN=2;DP=3090;set=variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant18-variant23-variant25-variant30-variant31-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:70,73:143:99:1820,0,1866:32,38,38,35
chr2	97862260	.	T	A	3299.91	PASS	AC=2;AF=0.932;AN=2;DP=3896;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1385,126,0:0,0,27,15
chr2	97870072	.	A	T	280.29	PASS	AC=2;AF=0.571;AN=2;DP=320;FractionInformativeReads=1;set=variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant25-variant31-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:573,48,0:0,0,4,12
chr2	97871906	.	G	A	555.11	PASS	AC=1;AF=0.5;AN=2;DP=487;FractionInformativeReads=1;set=variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant18-variant25-variant30-variant31-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:427,0,300:1,9,8,9
chr2	97875546	.	G	A	284.86	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=1.922;FractionInformativeReads=1;MQ=53.56;MQRankSum=-1.216;QD=14.24;ReadPosRankSum=-0.76;SOR=0.307;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:313,0,231:7,2,7,4
chr2	97877292	.	C	A	2242.22	PASS	AC=2;AF=0.932;AN=2;DP=2890;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:879,84,0:0,0,16,12
chr2	97877399	.	T	C	5181.84	PASS	AC=2;AF=0.932;AN=2;DP=6451;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:2823,292,0:0,0,58,40
chr2	97881267	.	G	A	585.25	PASS	AC=2;AF=0.529;AN=2;DP=1354;FractionInformativeReads=1;set=variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant18-variant23-variant25-variant30-variant31-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1505,161,0:0,0,27,27
chr2	97882648	.	G	A	151.42	PASS	AC=2;AF=0.548;AN=2;DP=414;FractionInformativeReads=1;set=variant2-variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant18-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:653,57,0:0,0,14,5
chr2	97884763	.	T	C	251.02	PASS	AC=2;AF=0.595;AN=2;DP=767;set=variant2-variant4-variant5-variant9-variant10-variant13-variant16-variant17-variant18-filterInvariant23-variant24-variant25-variant27-variant30-variant31-variant32-variant34-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:892,99,0:0,0,18,15
chr2	97909803	.	CTT	C	202.48	PASS	AC=1;AF=0.511;AN=2;DP=1145;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:366,0,729:5,13,4,6
chr2	97909820	.	T	C	211.53	PASS	AC=1;AF=0.5;AN=2;DP=1165;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:405,0,768:5,14,5,6
chr2	97909822	.	C	A	211.53	PASS	AC=1;AF=0.5;AN=2;DP=1164;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:405,0,768:5,14,5,6
chr2	97909823	.	C	T	211.53	PASS	AC=1;AF=0.5;AN=2;DP=1164;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:405,0,768:5,14,5,6
chr2	97909839	.	C	T	569.36	PASS	AC=1;AF=0.512;AN=2;DP=1121;set=filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:219,0,428:5,14,5,7
chr2	97909853	.	G	A	212.34	PASS	AC=1;AF=0.511;AN=2;DP=943;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:459,0,597:3,12,5,7
chr2	97909857	.	G	A	212.34	PASS	AC=1;AF=0.511;AN=2;DP=872;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:459,0,597:3,12,5,7
chr2	97909862	.	A	G	154.63	PASS	AC=1;AF=0.512;AN=2;DP=749;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-filterInvariant12-variant13-filterInvariant14-filterInvariant15-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-variant32-filterInvariant33-variant34-variant35-variant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:465,0,512:3,10,5,7
chr2	97909899	.	G	GTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCA,GTGGGCCGGGCGCGGTGGCT,GTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCC,GTGGGCCGGGCGCGGTGGCTCA,GTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACAGGCGGATCA,GTGGGCTGGGCGCGGTGGCTCACGC,GTGGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGC,GTGGGCCGGGCGCGGTGGCTCACGCCTGTAATC	142.22	PASS	AC=0,0,1,0,0,0,0,0;AF=0.143,0.048,0.167,0.048,0.024,0.048,0.071,0.024;AN=2;DP=198;set=variant2-variant5-variant6-variant7-variant11-variant13-variant14-variant16-variant17-variant20-variant21-variant26-variant27-variant28-variant31-variant34-variant37-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/3:10:99:0,4,1,5
chr2	98128135	.	G	A	2671.77	DRAGENHardSNP	AC=2;AF=0.807;AN=2;DP=5507;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:3049,205,0:0,0,50,11
chr2	98128139	.	C	T	221.81	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2808;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:58,12:70:99:109,0,1426:46,12,8,4
chr2	98128143	.	T	C	3200.56	DRAGENHardSNP	AC=2;AF=0.807;AN=2;DP=6729;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3620,247,0:0,0,60,21
chr2	98128150	.	G	A	1734.46	DRAGENHardSNP	AC=1;AF=0.568;AN=2;DP=8022;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:21,76:97:99:1770,0,288:15,6,51,25
chr2	98128172	.	C	A	6271.77	DRAGENHardSNP	AC=2;AF=0.807;AN=2;DP=11877;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5547,501,0:0,0,89,78
chr2	98128183	.	C	G	459.48	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=6440;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:152,33:185:99:262,0,3204:76,76,16,17
chr2	98128194	.	G	C	6766.77	DRAGENHardSNP	AC=2;AF=0.807;AN=2;DP=13568;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:8324,557,0:0,0,92,93
chr2	98128195	.	G	A	6766.77	DRAGENHardSNP	AC=2;AF=0.807;AN=2;DP=13560;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:8324,557,0:0,0,92,93
chr2	98128196	.	T	C	6766.77	DRAGENHardSNP	AC=2;AF=0.807;AN=2;DP=13552;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,185:185:99:8324,557,0:0,0,92,93
chr2	98128228	.	G	A	518.69	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=6082;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:149,36:185:99:336,0,3769:73,76,18,18
chr2	98128234	.	T	C	71.09	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=3488;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:153,33:186:99:260,0,3896:76,77,16,17
chr2	98128256	.	C	T	5956.77	DRAGENHardSNP	AC=2;AF=0.807;AN=2;DP=11393;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:1,166:167:99:7392,464,0:0,1,74,92
chr2	98128258	.	G	C	5911.77	DRAGENHardSNP	AC=2;AF=0.807;AN=2;DP=11097;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:1,162:163:99:7343,458,0:0,1,70,92
chr2	98128300	.	A	G	834.32	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=4463;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:50,20:70:99:387,0,1215:13,37,2,18
chr2	98128313	.	G	A	510.55	PASS	AC=1;AF=0.557;AN=2;DP=2487;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-filterInvariant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:5,27:32:71:735,0,71:0,5,4,23
chr2	98128515	.	C	T	124.68	DRAGENHardSNP	AC=1;AF=0.536;AN=2;DP=581;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:96:96,0,404:6,3,2,1
chr2	98128520	.	G	A	124.68	DRAGENHardSNP	AC=1;AF=0.536;AN=2;DP=591;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:96:96,0,404:6,4,2,1
chr2	98128630	.	G	T	98.18	PASS	AC=1;AF=0.536;AN=2;DP=89;set=filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant25-filterInvariant29-filterInvariant30-filterInvariant32-filterInvariant35-filterInvariant36-filterInvariant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,307:0,6,1,2
chr2	98129670	.	C	T	226.2	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=587;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:76:76,0,158:5,2,3,1
chr2	98129682	.	T	C	121.68	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1353;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:5,9:14:99:357,0,267:2,3,6,3
chr2	98129683	.	G	A	121.68	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1358;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:357,0,267:3,4,6,3
chr2	98129690	.	T	C	166.67	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1434;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:357,0,267:3,4,6,3
chr2	98129691	.	G	A	166.67	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1436;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:7,9:16:99:357,0,267:3,4,6,3
chr2	98129707	.	G	T	334.63	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1607;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:525,0,234:3,4,7,5
chr2	98129716	.	A	G	370.59	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1647;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:570,0,210:2,4,8,6
chr2	98129717	.	C	T	370.59	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1649;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:570,0,210:2,4,8,6
chr2	98129731	.	C	T	451.56	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1717;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:99:612,0,207:2,4,9,6
chr2	98129733	.	A	C	451.56	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1723;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:99:612,0,207:2,4,9,6
chr2	98129734	.	T	C	451.56	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1730;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:99:612,0,207:2,4,9,6
chr2	98129744	.	C	T	451.56	DRAGENHardSNP	AC=1;AF=0.511;AN=2;DP=1782;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:6,15:21:99:612,0,207:2,4,9,6
chr2	98129817	.	T	C	31.68	DRAGENHardSNP	AC=1;AF=0.514;AN=2;DP=810;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:172,0,148:2,5,2,6
chr2	98148951	.	T	C	95.98	PASS	AC=2;AF=1;AN=2;DP=32;FS=0;FractionInformativeReads=1;set=variant5-variant10-variant13-variant17-variant25-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:279,24,0:0,0,4,4
chr2	98148968	.	G	C	92.75	PASS	AC=1;AF=0.917;AN=2;DP=37;FS=0;FractionInformativeReads=1;MQRankSum=-0.922;ReadPosRankSum=-0.421;set=variant5-variant10-variant13-variant17-variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:75:75,0,75:2,2,2,2
chr2	98156514	.	C	T	233.84	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=57.99;MQRankSum=-2.835;QD=11.69;ReadPosRankSum=-0.945;SOR=0.399;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:262,0,309:7,3,6,4
chr2	98162104	.	A	C	594.87	PASS	AC=1;AF=0.864;AN=2;DP=331;FractionInformativeReads=1;set=variant5-variant10-variant13-variant17-variant18-variant25-variant30-variant31-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:621,0,423:12,5,15,7
chr2	98165911	.	T	C	3440.94	PASS	AC=1;AF=0.5;AN=2;DP=1565;set=variant5-variant10-variant13-variant17-variant18-variant25-variant30-variant31-variant34-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,209:252:99:5607,0,573:28,15,119,90
chr2	98272634	.	G	A	707.79	PASS	AC=1;AF=0.5;AN=2;DP=719;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant13-variant17-variant18-variant25-variant30-variant31-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:770,0,708:11,15,17,15
chr2	98272734	.	A	G	2417.07	PASS	AC=2;AF=0.825;AN=2;DP=3101;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2412,222,0:0,0,42,32
chr2	98273661	.	A	G	738.33	PASS	AC=1;AF=0.813;AN=2;DP=1193;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:506,0,361:4,11,5,11
chr2	98274527	.	G	C	4909.86	PASS	AC=1;AF=0.813;AN=2;DP=8370;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,99:222:99:2525,0,3087:65,58,50,49
chr2	98277090	.	T	C	1722.93	PASS	AC=1;AF=0.5;AN=2;DP=2181;MQ=60;set=variant5-variant10-variant13-variant17-variant18-variant25-variant30-variant31-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:95,98:193:99:2195,0,2197:50,45,52,46
chr2	98280488	.	C	T	263.25	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=1.51;FractionInformativeReads=1;MQ=60;MQRankSum=1.237;QD=9.75;ReadPosRankSum=0.558;SOR=0.883;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:291,0,247:6,7,8,6
chr2	98317490	.	G	A	263.35	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=4.641;FractionInformativeReads=1;MQ=59.13;MQRankSum=-1.338;QD=5.6;ReadPosRankSum=-3.315;SOR=1.489;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,14:47:99:292,0,753:18,15,10,4
chr2	98317771	.	C	A	739.7	PASS	AC=2;AF=0.825;AN=2;DP=1868;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1808,162,0:0,0,14,40
chr2	98330218	.	A	G	147.77	PASS	AC=2;AF=0.855;AN=2;DP=626;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:466,36,0:0,0,8,4
chr2	98340364	.	A	C	1174.51	PASS	AC=2;AF=0.878;AN=2;DP=2248;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1713,150,0:0,0,35,15
chr2	98349454	.	C	T	1466.73	PASS	AC=1;AF=0.5;AN=2;DP=140;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.881;QD=10.48;ReadPosRankSum=-0.584;SOR=0.679;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:76,64:140:99:1495,0,1799:43,33,36,28
chr2	98355614	.	C	G	451.52	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=1.303;FractionInformativeReads=1;MQ=60;MQRankSum=1.009;QD=11.88;ReadPosRankSum=1.038;SOR=0.397;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:480,0,553:13,7,10,8
chr2	98372980	.	A	G	3977.38	PASS	AC=1;AF=0.581;AN=2;DP=11718;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:196,167:363:99:4022,0,4607:93,103,80,87
chr2	98373006	.	C	T	12461.7	PASS	AC=2;AF=0.792;AN=2;DP=12774;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,317:318:99:9446,906,0:1,0,135,182
chr2	98373850	.	C	T	234.79	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=2.318;FractionInformativeReads=1;MQ=60;MQRankSum=-1.707;QD=10.67;ReadPosRankSum=1.51;SOR=0.155;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:263,0,355:1,10,3,8
chr2	98376989	.	TA	T	224.27	PASS	AC=2;AF=0.863;AN=2;DP=494;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:360,33,0:0,0,10,1
chr2	98413220	.	A	T	800.7	PASS	AC=1;AF=0.5;AN=2;DP=89;FractionInformativeReads=1;MQ=60;set=variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:829,0,689:19,5,20,8
chr2	98414015	.	T	C	924.59	PASS	AC=1;AF=0.5;AN=2;DP=362;MQ=60;set=variant5-variant10-variant17-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:922,0,753:14,16,12,23
chr2	98418812	.	CA	C	330.69	PASS	AC=1;AF=0.632;AN=2;DP=746;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:362,0,290:7,3,8,4
chr2	98421983	.	A	G	1847.01	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=1.383;FractionInformativeReads=1;MQ=60;MQRankSum=-0.628;QD=13.89;ReadPosRankSum=-1.109;SOR=0.564;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,75:133:99:1875,0,1423:33,25,40,35
chr2	98432321	.	G	A,T	1163.49	PASS	AC=1,0;AF=0.417,0.083;AN=2;DP=739;MQ=60;set=variant5-variant10-variant17-variant18-variant33-variant41	GT:DP:GQ:SB	0/1:117:99:17,36,27,37
chr2	98443694	.	C	T	2056.24	PASS	AC=1;AF=0.583;AN=2;DP=5772;set=variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant33-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,98:169:99:2418,0,1724:44,27,62,36
chr2	98449796	.	C	T	523.11	PASS	AC=2;AF=1;AN=2;DP=750;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.542;ReadPosRankSum=0.385;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:509,51,0:0,0,11,6
chr2	98460441	.	TAG	T	217.55	PASS	AC=1;AF=0.685;AN=2;DP=234;MQ=60;set=variant4-variant5-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant28-variant29-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:76:77,0,76:1,1,2,0
chr2	98475979	.	C	T	225.93	PASS	AC=1;AF=0.645;AN=2;DP=418;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:180,0,228:0,6,0,5
chr2	98525107	.	T	C	2335.59	PASS	AC=2;AF=0.866;AN=2;DP=3185;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1705,179,0:0,0,29,31
chr2	98544058	.	T	C	134.92	PASS	AC=1;AF=0.667;AN=2;DP=366;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:178,0,299:1,8,2,5
chr2	98611833	.	T	C	501.44	PASS	AC=2;AF=0.875;AN=2;DP=602;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:403,33,0:0,0,7,4
chr2	98611994	.	G	T	1341.73	PASS	AC=2;AF=0.866;AN=2;DP=3016;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,53:54:99:1464,150,0:0,1,26,27
chr2	98612266	.	A	G	3462.48	PASS	AC=2;AF=0.866;AN=2;DP=5309;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3185,323,0:0,0,57,51
chr2	98703659	.	G	T	76.34	PASS	AC=2;AF=0.574;AN=2;DP=1372;FractionInformativeReads=1;MQ=60;set=filterInvariant-variant2-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant18-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,38:39:99:1199,106,0:1,0,23,15
chr2	98736225	.	C	T	1334.49	PASS	AC=1;AF=0.5;AN=2;DP=753;FractionInformativeReads=1;MQ=60;set=variant15-variant18-variant25-variant33-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,42:82:99:1199,0,1013:12,28,14,28
chr2	98797744	.	C	T	1148.55	PASS	AC=1;AF=0.767;AN=2;DP=1653;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:866,0,588:1,17,5,22
chr2	98804314	.	G	A	855.91	PASS	AC=2;AF=0.872;AN=2;DP=963;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:56:683,56,0:0,0,16,3
chr2	98811075	.	A	G	1340.37	PASS	AC=2;AF=0.86;AN=2;DP=1716;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1265,120,0:0,0,13,27
chr2	98833445	.	A	ACCC,ACCCC,ACCCCC,ACC	205.58	PASS	AC=0,0,0,2;AF=0.273,0.303,0.061,0.076;AN=2;DP=704;MQ=60;set=variant-variant2-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/4:9:26:0,0,1,8
chr2	98833449	.	G	GC,C	930.54	PASS	AC=1,1;AF=0.125,0.65;AN=2;DP=339;MQ=60;set=variant19-variant22-variant25-variant26-variant27-variant30-variant32-variant33-variant2-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant3-variant41-variant5-variant44	GT:DP:GQ:SB	2/1:9:99:0,0,1,8
chr2	98834355	.	C	T	1015.9	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.981;QD=11.68;ReadPosRankSum=-2.162;SOR=0.743;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:1044,0,1119:22,23,20,22
chr2	98844575	.	A	G	243.51	PASS	AC=2;AF=0.707;AN=2;DP=1050;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:640,51,0:0,0,14,3
chr2	98844674	.	C	G	1379.61	PASS	AC=2;AF=0.702;AN=2;DP=5520;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3539,348,0:0,0,68,48
chr2	98853173	.	G	A	1736.35	PASS	AC=2;AF=0.671;AN=2;DP=3704;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2847,281,0:0,0,38,56
chr2	98862097	.	A	G	852.69	PASS	AC=2;AF=0.802;AN=2;DP=2080;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2108,189,0:0,0,16,47
chr2	98872662	.	C	CT,CTT	545.65	PASS	AC=1,0;AF=0.698,0.035;AN=2;DP=1751;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:35:35:1,4,6,24
chr2	98928494	.	G	A	2477.28	PASS	AC=2;AF=0.966;AN=2;DP=3758;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2682,237,0:0,0,37,42
chr2	98994309	.	T	G	485.78	PASS	AC=1;AF=0.5;AN=2;DP=177;FractionInformativeReads=1;MQ=60;set=variant15-variant26-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,21:34:99:710,0,376:4,9,7,14
chr2	98994414	.	T	C	1043.23	PASS	AC=2;AF=0.714;AN=2;DP=3117;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2388,198,0:0,0,45,21
chr2	98999767	.	G	T	2108.17	PASS	AC=1;AF=0.5;AN=2;DP=169;FS=1.905;FractionInformativeReads=1;MQ=60;MQRankSum=-0.649;QD=12.47;ReadPosRankSum=-1.36;SOR=0.542;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:83,86:169:99:2136,0,2014:45,38,43,43
chr2	99061362	.	G	C	643.29	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=1.366;FractionInformativeReads=1;MQ=60;MQRankSum=-0.029;QD=16.08;ReadPosRankSum=1.877;SOR=0.407;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,27:40:99:672,0,298:9,4,16,11
chr2	99135627	.	C	T	234.5	PASS	AC=2;AF=0.833;AN=2;DP=63;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant14-variant15-variant16-variant17-variant24-variant25-variant28-variant30-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr2	99136266	.	T	C	524.06	PASS	AC=2;AF=0.64;AN=2;DP=596;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:888,63,0:0,0,18,3
chr2	99137265	.	C	G	205.55	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=3.565;FractionInformativeReads=1;MQ=60;MQRankSum=0.321;QD=7.61;ReadPosRankSum=1.505;SOR=1.163;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:234,0,479:9,7,4,7
chr2	99149946	.	G	A	1217.07	PASS	AC=1;AF=0.6;AN=2;DP=3508;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:93,69:162:99:1816,0,2360:42,51,26,43
chr2	99154229	.	C	T	1228.51	PASS	AC=2;AF=0.62;AN=2;DP=2267;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2881,280,0:0,0,59,35
chr2	99160508	.	GCA	G	223.78	PASS	AC=2;AF=0.659;AN=2;DP=663;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:726,63,0:0,0,3,18
chr2	99163261	.	T	A	579.8	PASS	AC=2;AF=0.62;AN=2;DP=1614;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1751,174,0:0,0,22,36
chr2	99168953	.	T	C	234.68	PASS	AC=2;AF=0.976;AN=2;DP=266;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:229,18,0:0,0,5,1
chr2	99172244	.	A	G	171.9	PASS	AC=2;AF=0.62;AN=2;DP=2067;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2413,255,0:0,0,37,48
chr2	99181315	.	AT	A	2163.71	PASS	AC=2;AF=0.62;AN=2;DP=3681;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:5078,379,0:0,0,49,77
chr2	99193496	.	C	T	268.73	PASS	AC=2;AF=0.62;AN=2;DP=2010;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2589,249,0:0,0,39,44
chr2	99204428	.	C	T	4153.96	PASS	AC=2;AF=0.6;AN=2;DP=5938;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,214:214:99:7191,641,0:0,0,94,120
chr2	99205962	.	T	C	4898.5	PASS	AC=2;AF=0.6;AN=2;DP=7848;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,320:320:99:9436,959,0:0,0,160,160
chr2	99216158	.	G	A	2353.35	PASS	AC=1;AF=0.5;AN=2;DP=324;FractionInformativeReads=1;MQ=60;set=variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,79:147:99:2128,0,1773:26,42,31,48
chr2	99216531	.	A	G	721.65	PASS	AC=2;AF=0.6;AN=2;DP=1341;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1628,156,0:0,0,28,24
chr2	99216593	.	T	A	832.8	PASS	AC=2;AF=0.6;AN=2;DP=1504;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2043,180,0:0,0,38,22
chr2	99219071	.	T	C	80.46	PASS	AC=2;AF=0.595;AN=2;DP=208;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant20-variant22-variant24-variant25-variant28-variant29-variant31-variant33-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:591,45,0:0,0,13,2
chr2	99219111	.	CA	C	118.49	PASS	AC=1;AF=0.5;AN=2;DP=547;set=variant2-variant5-variant6-filterInvariant8-variant10-variant14-variant16-variant17-variant19-variant21-filterInvariant23-variant25-variant26-variant29-filterInvariant31-filterInvariant32-variant34-variant36-filterInvariant38-variant39-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,7:22:74:74,0,294:12,3,4,3
chr2	99219206	.	T	A	284.5	PASS	AC=2;AF=0.6;AN=2;DP=1112;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1241,120,0:0,0,19,21
chr2	99220707	.	T	C	345.25	PASS	AC=2;AF=0.6;AN=2;DP=705;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:325,30,0:0,0,3,7
chr2	99224998	.	C	G	2120.75	PASS	AC=2;AF=0.6;AN=2;DP=4822;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,181:181:99:5867,543,0:0,0,73,108
chr2	99225168	.	C	T	1635.7	PASS	AC=2;AF=0.6;AN=2;DP=3721;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,143:143:99:4225,425,0:0,0,74,69
chr2	99225645	.	T	C	577.56	PASS	AC=2;AF=0.6;AN=2;DP=1821;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2056,195,0:0,0,35,30
chr2	99225766	.	TGATG	T	1102.53	PASS	AC=2;AF=0.6;AN=2;DP=1727;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:3286,220,0:0,0,39,34
chr2	99226021	.	C	T	528.44	PASS	AC=2;AF=0.6;AN=2;DP=1218;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1244,99,0:0,0,17,16
chr2	99226173	.	T	A	849.42	PASS	AC=2;AF=0.6;AN=2;DP=1905;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2865,263,0:0,0,51,37
chr2	99234586	.	A	AT	234.77	PASS	AC=1;AF=0.622;AN=2;DP=2188;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:224,0,368:16,3,12,2
chr2	99234866	.	T	C	739.91	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.356;FractionInformativeReads=1;MQ=60;MQRankSum=0.494;QD=18.05;ReadPosRankSum=2.178;SOR=1.189;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,25:41:99:768,0,395:6,10,7,18
chr2	99235055	.	A	G	106.77	PASS	AC=2;AF=0.778;AN=2;DP=53;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant9-variant15-variant16-variant29-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:409,30,0:0,0,1,9
chr2	99237439	.	A	G	2788.18	PASS	AC=2;AF=0.6;AN=2;DP=6175;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant11-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,213:213:99:6672,637,0:0,0,101,112
chr2	99237792	.	C	T	573.14	PASS	AC=2;AF=0.604;AN=2;DP=1514;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant9-variant14-variant15-variant16-variant17-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2390,234,0:0,0,38,40
chr2	99239164	.	T	C	557.63	PASS	AC=2;AF=0.611;AN=2;DP=771;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant11-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1229,131,0:0,0,21,23
chr2	99239269	.	C	T	518.72	PASS	AC=2;AF=0.611;AN=2;DP=529;MQ=60;set=variant2-variant5-variant11-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:77:706,77,0:0,0,9,17
chr2	99239497	.	G	A	72.4	PASS	AC=2;AF=0.643;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant14-variant15-variant16-variant17-variant20-variant25-variant31-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:167,12,0:0,0,4,0
chr2	99239931	.	C	T	687.32	PASS	AC=2;AF=0.611;AN=2;DP=1608;MQ=60;set=variant2-variant5-variant11-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,82:84:99:2515,202,0:1,1,44,38
chr2	99240243	.	A	T	1453.16	PASS	AC=2;AF=0.611;AN=2;DP=3367;MQ=60;set=variant2-variant5-variant11-variant14-variant15-variant16-variant17-variant20-variant24-variant25-variant28-variant30-variant31-variant33-variant35-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,191:191:99:5772,571,0:0,0,90,101
chr2	99272057	.	T	C	195.66	PASS	AC=1;AF=0.685;AN=2;DP=387;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant12-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,199:0,6,0,4
chr2	99274653	.	T	C	770.39	PASS	AC=1;AF=0.685;AN=2;DP=1846;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant12-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,34:58:99:802,0,542:14,10,19,15
chr2	99438487	.	G	A	2497.75	PASS	AC=1;AF=0.5;AN=2;DP=188;FS=1.187;FractionInformativeReads=0.995;MQ=60;MQRankSum=-0.988;QD=13.29;ReadPosRankSum=-1.823;SOR=0.807;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:93,94:187:99:2526,0,2499:59,34,62,32
chr2	99439512	.	C	G	1895.71	PASS	AC=1;AF=0.5;AN=2;DP=119;FS=3.486;FractionInformativeReads=1;MQ=60;MQRankSum=-0.819;QD=15.93;ReadPosRankSum=1.759;SOR=0.745;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,78:119:99:1924,0,930:19,22,42,36
chr2	99443369	.	T	TG	77.04	PASS	AC=1;AF=0.806;AN=2;DP=102;FS=0;MQ=60;set=variant2-variant3-variant13-variant14-variant15-variant18-variant22-variant25-variant29-variant30-variant31-variant33-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:65:93,0,65:3,0,4,0
chr2	99449174	.	C	T	181.05	PASS	AC=1;AF=0.682;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:362,0,461:11,1,6,4
chr2	99485461	.	C	T	373.08	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.616;QD=17.77;ReadPosRankSum=0.109;SOR=0.387;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:401,0,252:7,1,10,3
chr2	99485920	.	C	T	1628.26	PASS	AC=1;AF=0.5;AN=2;DP=180;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,39:93:99:978,0,1441:22,32,12,27
chr2	99613924	.	C	T	6533.12	PASS	AC=1;AF=0.586;AN=2;DP=7055;MQ=60;set=variant2-variant4-variant5-variant7-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:127,102:229:99:2302,0,3072:50,77,39,63
chr2	99614396	.	G	T	10339.2	PASS	AC=2;AF=0.613;AN=2;DP=11319;MQ=60;set=variant2-variant4-variant5-variant7-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,326:327:99:10101,969,0:0,1,168,158
chr2	99688127	.	A	G	1389.59	PASS	AC=1;AF=0.5;AN=2;DP=233;FractionInformativeReads=1;MQ=60;set=variant26-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:884,0,756:19,5,24,5
chr2	99695097	.	A	G	2807.27	PASS	AC=1;AF=0.6;AN=2;DP=2091;MQ=60;set=variant2-variant4-variant5-variant7-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,38:74:99:1240,0,929:22,14,33,5
chr2	99725223	.	A	G	986.15	PASS	AC=2;AF=0.705;AN=2;DP=692;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:419,30,0:0,0,10,0
chr2	99725479	.	A	AT	1904.54	PASS	AC=2;AF=0.7;AN=2;DP=2172;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1980,159,0:0,0,12,41
chr2	99726043	.	A	G	4060.38	PASS	AC=2;AF=1;AN=2;DP=5295;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3512,346,0:0,0,44,72
chr2	99727391	.	TA	T	165.1	PASS	AC=2;AF=0.773;AN=2;DP=90;MQ=60;set=variant3-variant4-variant8-variant12-variant17-variant22-variant26-variant34-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:78,9,0:0,0,0,3
chr2	99735052	.	G	T	2933.45	PASS	AC=1;AF=0.684;AN=2;DP=2752;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,44:83:99:1217,0,1048:29,10,32,12
chr2	99735263	.	T	C	502.05	PASS	AC=1;AF=0.5;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant26-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,18:47:99:602,0,920:7,22,3,15
chr2	99743419	.	G	A	6129.72	PASS	AC=1;AF=0.684;AN=2;DP=7874;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,77:194:99:1787,0,2813:67,50,44,33
chr2	99758020	.	G	GCGCAGGCGCACGCCCA	4861.73	PASS	AC=1;AF=0.684;AN=2;DP=5359;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,54:123:99:2215,0,4070:31,38,32,22
chr2	99771268	.	G	C	4833.13	PASS	AC=2;AF=0.7;AN=2;DP=5934;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:7111,485,0:0,0,94,63
chr2	99771272	.	C	T	4906.66	PASS	AC=2;AF=0.7;AN=2;DP=5961;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:7100,482,0:0,0,97,63
chr2	99771533	.	C	T	3931.61	PASS	AC=2;AF=0.705;AN=2;DP=6704;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,155:156:99:4745,455,0:1,0,55,100
chr2	99771590	.	G	T	2184.61	PASS	AC=2;AF=0.705;AN=2;DP=3193;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2583,238,0:0,0,23,57
chr2	99772008	.	G	GT	1594.33	PASS	AC=1;AF=0.5;AN=2;DP=212;MQ=60;set=variant26-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,24:63:99:708,0,1271:13,26,6,18
chr2	99778735	.	A	G	1787.35	PASS	AC=1;AF=0.5;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant26-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,57:93:99:1407,0,936:17,19,29,28
chr2	99778985	.	T	C	3430.89	PASS	AC=2;AF=0.705;AN=2;DP=4184;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2900,258,0:0,0,43,43
chr2	99779131	.	T	C	3448.7	PASS	AC=1;AF=0.684;AN=2;DP=3755;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,49:110:99:1160,0,1567:27,34,25,24
chr2	99779642	.	CA	CAA,CAAA,C	654.42	PASS	AC=1,0,0;AF=0.432,0.045,0.023;AN=2;DP=4710;set=variant4-variant5-variant7-filterInvariant8-variant9-filterInvariant11-variant12-variant13-filterInvariant14-variant18-variant19-variant24-variant26-filterInvariant27-filterInvariant29-filterInvariant32-filterInvariant33-variant34-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:165:99:48,49,36,32
chr2	99779654	.	AC	A	237.29	PASS	AC=1;AF=0.5;AN=2;DP=3182;set=filterInvariant-variant3-filterInvariant4-variant6-filterInvariant11-filterInvariant12-variant17-variant22-variant24-filterInvariant35-filterInvariant36-variant37-filterInvariant39-filterInvariant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:147,24:171:74:74,0,3591:75,72,10,14
chr2	99779655	.	C	A	2817.42	PASS	AC=1;AF=0.513;AN=2;DP=8555;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,139:171:99:3389,0,353:14,18,71,68
chr2	99797598	.	G	A	623.49	PASS	AC=1;AF=0.5;AN=2;DP=323;FractionInformativeReads=1;MQ=60;set=variant13-variant26-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,51:86:99:1287,0,825:16,19,26,25
chr2	99802820	.	A	G	541.44	PASS	AC=2;AF=0.711;AN=2;DP=492;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:662,57,0:0,0,3,16
chr2	99804642	.	T	C	2103.25	PASS	AC=2;AF=0.93;AN=2;DP=2491;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1444,149,0:0,0,28,22
chr2	99811894	.	C	T	2735.02	PASS	AC=2;AF=0.7;AN=2;DP=2382;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2263,206,0:0,0,50,19
chr2	99812070	.	G	A	5007.06	PASS	AC=2;AF=0.7;AN=2;DP=7041;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:5072,505,0:0,0,73,96
chr2	99813614	.	T	C	806.97	PASS	AC=2;AF=0.7;AN=2;DP=774;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-filterInvariant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:996,78,0:0,0,11,15
chr2	99918077	.	A	G	106.77	PASS	AC=2;AF=0.959;AN=2;DP=295;set=variant-variant2-variant3-variant5-variant6-filterInvariant7-variant9-variant11-variant13-variant14-variant15-variant16-filterInvariant17-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant30-variant31-variant32-variant33-variant35-filterInvariant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:100,12,0:0,0,4,0
chr2	99918180	.	C	CAA	674.79	PASS	AC=1;AF=0.569;AN=2;DP=1926;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,31:64:99:932,0,1069:20,13,19,12
chr2	99921205	.	C	G	362.99	PASS	AC=1;AF=0.569;AN=2;DP=698;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,12:17:99:318,0,165:0,5,4,8
chr2	99923088	.	T	C	1145.68	PASS	AC=2;AF=0.919;AN=2;DP=1521;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:974,87,0:0,0,20,9
chr2	99938942	.	A	G	690.78	PASS	AC=1;AF=0.629;AN=2;DP=873;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,14:27:99:453,0,346:10,3,11,3
chr2	99939031	.	A	G	1240.93	PASS	AC=1;AF=0.629;AN=2;DP=3276;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,31:75:99:653,0,1155:28,16,18,13
chr2	99949406	.	A	T	851.3	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=1.687;FractionInformativeReads=1;MQ=60;MQRankSum=-1.36;QD=8.35;ReadPosRankSum=-0.945;SOR=0.92;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:64,38:102:99:880,0,1561:37,27,24,14
chr2	99952888	.	G	C	596.58	PASS	AC=1;AF=0.581;AN=2;DP=2217;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,35:76:99:826,0,960:17,24,12,23
chr2	99954636	.	GT	G	1582.95	PASS	AC=2;AF=0.93;AN=2;DP=3443;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2778,280,0:0,0,61,32
chr2	99954735	.	C	A	1512.85	PASS	AC=1;AF=0.581;AN=2;DP=4225;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,92:167:99:2263,0,1880:37,38,47,45
chr2	99976564	.	A	G	61.77	PASS	AC=2;AF=0.978;AN=2;DP=74;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.736;ReadPosRankSum=0.736;set=variant2-variant3-variant4-variant5-variant6-variant11-variant12-variant16-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:87,6,0:0,0,2,0
chr2	99978048	.	G	A	837.01	PASS	AC=1;AF=0.571;AN=2;DP=461;MQ=60;set=variant3-variant6-variant9-variant11-variant22-variant23-variant26-variant27-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:261,0,368:6,6,6,3
chr2	99988453	.	CA	C	161.26	PASS	AC=1;AF=0.708;AN=2;DP=442;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,13:17:83:396,0,83:1,3,3,10
chr2	99992822	.	A	C	388.73	PASS	AC=1;AF=0.697;AN=2;DP=835;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:413,0,425:10,4,11,2
chr2	99995804	.	T	C	1453.33	PASS	AC=1;AF=0.692;AN=2;DP=6367;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,58:162:99:1186,0,2608:56,48,30,28
chr2	99998561	.	C	T	356.54	PASS	AC=1;AF=0.684;AN=2;DP=1004;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:287,0,401:9,6,8,2
chr2	100006620	.	G	T	794.64	PASS	AC=1;AF=0.679;AN=2;DP=1494;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:720,0,678:17,5,20,6
chr2	100006890	.	GT	GTT,G	276.2	PASS	AC=1,0;AF=0.473,0.027;AN=2;DP=3452;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:66:99:13,21,11,21
chr2	100010685	.	A	G	742.42	PASS	AC=1;AF=0.571;AN=2;DP=620;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant11-variant22-variant23-variant26-variant27-variant35-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:755,0,636:16,7,19,5
chr2	100016672	.	ATTAATCTTGATCTGTT	A	132.02	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=0;FractionInformativeReads=0.829;MQ=59.56;MQRankSum=1.513;QD=3.22;ReadPosRankSum=-0.836;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,6:34:99:169,0,5253:14,14,3,3
chr2	100016713	.	G	C	301.15	PASS	AC=1;AF=0.629;AN=2;DP=985;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,9:39:99:229,0,5281:15,15,4,5
chr2	100019496	.	A	G	1470.76	PASS	AC=1;AF=0.679;AN=2;DP=3017;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,21:63:99:531,0,1165:20,22,9,12
chr2	100019612	.	TG	T	617.48	PASS	AC=1;AF=0.629;AN=2;DP=1106;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:358,0,436:1,13,5,7
chr2	100021184	.	A	G	1393.87	PASS	AC=1;AF=0.629;AN=2;DP=3196;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,57:93:99:1582,0,1026:10,26,19,38
chr2	100022270	.	G	A	93.2	PASS	AC=1;AF=0.661;AN=2;DP=284;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:49:163,0,49:1,1,4,1
chr2	100022772	.	T	C	1129.84	PASS	AC=1;AF=0.629;AN=2;DP=3073;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,62:103:99:1733,0,1016:26,15,40,22
chr2	100046209	.	A	AAATCACTGGCCTGACTGGCAGGTCTG	31	PASS	AC=2;AF=0.714;AN=2;DP=66;MQ=60;set=variant4-variant16-variant29-variant34-variant36-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:23:358,23,0:0,0,6,0
chr2	100055506	.	A	G	868.59	PASS	AC=1;AF=0.679;AN=2;DP=2415;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,45:82:99:1390,0,971:16,21,23,22
chr2	100068069	.	T	C	143.08	PASS	AC=1;AF=0.647;AN=2;DP=828;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:348,0,454:2,10,4,9
chr2	100081323	.	C	T	538.4	PASS	AC=1;AF=0.679;AN=2;DP=2536;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,21:58:99:501,0,954:22,15,14,7
chr2	100081561	.	A	AAAGTC	524.02	PASS	AC=1;AF=0.719;AN=2;DP=318;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:99:162,0,129:0,2,0,4
chr2	100106547	.	C	CCGGCCCCGCCCACGCCCCCTCCG,CCGGCCCCGCCCAGGCCCCCTCCG	184.98	PASS	AC=1,0;AF=0.712,0.038;AN=2;DP=227;MQ=60;set=variant2-variant3-variant5-variant8-variant11-variant13-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:8:99:3,2,0,3
chr2	100176775	.	A	G	1075.35	PASS	AC=1;AF=0.6;AN=2;DP=1012;MQ=60;set=variant3-variant4-variant10-variant12-variant16-variant21-variant22-variant24-variant29-variant30-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:656,0,561:13,11,15,14
chr2	100210074	.	G	C	554.28	PASS	AC=1;AF=0.528;AN=2;DP=1732;MQ=60;set=variant-variant4-variant6-variant8-variant21-variant22-variant25-variant26-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,56:106:99:1352,0,1161:25,25,25,31
chr2	100210642	.	T	C	1949.96	PASS	AC=1;AF=0.528;AN=2;DP=4351;MQ=60;set=variant-variant4-variant6-variant8-variant21-variant22-variant25-variant26-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:116,107:223:99:2819,0,3132:47,69,41,66
chr2	100217726	.	A	AG	116.29	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.378;QD=9.69;ReadPosRankSum=0.259;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,6:12:99:154,0,153:5,1,5,1
chr2	100217754	.	T	C	240.08	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.34;QD=12;ReadPosRankSum=0.794;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:268,0,293:8,2,7,3
chr2	100217794	.	A	AG	584.16	PASS	AC=1;AF=0.5;AN=2;DP=39;FS=5.129;FractionInformativeReads=1;MQ=60;MQRankSum=-0.521;QD=14.98;ReadPosRankSum=-0.634;SOR=0.172;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:621,0,498:14,4,12,9
chr2	100288931	.	G	A	964.32	PASS	AC=1;AF=0.633;AN=2;DP=2503;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant26-variant27-variant28-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,41:81:99:1019,0,989:22,18,24,17
chr2	100343557	.	C	T	3142.78	PASS	AC=2;AF=1;AN=2;DP=4881;FS=0;MQ=60;MQRankSum=-0.917;ReadPosRankSum=1.703;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3719,377,0:0,0,67,59
chr2	100454085	.	T	A	1053.36	PASS	AC=1;AF=0.5;AN=2;DP=500;FractionInformativeReads=1;MQ=60;set=variant7-variant20-variant26-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,57:96:99:1413,0,898:16,23,24,33
chr2	100623130	.	G	A	1752.64	PASS	AC=1;AF=0.5;AN=2;DP=517;MQ=60;set=variant14-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:85,103:188:99:2417,0,2017:42,43,52,51
chr2	100623394	.	C	T	1865.37	PASS	AC=1;AF=0.5;AN=2;DP=157;FS=2.802;FractionInformativeReads=1;MQ=60;MQRankSum=-0.125;QD=11.88;ReadPosRankSum=-2.863;SOR=0.547;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,77:157:99:1894,0,2028:36,44,39,38
chr2	100721050	.	A	G	231.69	PASS	AC=2;AF=0.685;AN=2;DP=296;set=variant-variant2-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant23-variant27-variant28-variant29-variant33-variant35-variant36-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:235,24,0:0,0,3,5
chr2	100891976	.	C	T	839.2	PASS	AC=2;AF=0.86;AN=2;DP=1930;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1001,84,0:0,0,12,16
chr2	100892516	.	C	T	1930.17	PASS	AC=1;AF=0.721;AN=2;DP=2937;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:751,0,1110:15,24,14,18
chr2	100893113	.	C	A	4496.03	PASS	AC=1;AF=0.721;AN=2;DP=7617;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,59:143:99:1132,0,2231:35,49,23,36
chr2	100894114	.	C	G	1774.15	PASS	AC=1;AF=0.707;AN=2;DP=2645;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,34:54:99:1367,0,1000:11,9,18,16
chr2	100894115	.	T	C	1774.15	PASS	AC=1;AF=0.707;AN=2;DP=2661;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,34:54:99:1367,0,1000:11,9,18,16
chr2	100894387	.	C	T	1041.97	PASS	AC=1;AF=0.5;AN=2;DP=205;FractionInformativeReads=1;MQ=60;set=variant18-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,24:59:99:631,0,864:17,18,10,14
chr2	100894802	.	C	G	3136.03	PASS	AC=1;AF=0.709;AN=2;DP=4063;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,31:79:99:901,0,1329:18,30,14,17
chr2	100894887	.	C	T	1658.4	PASS	AC=1;AF=0.707;AN=2;DP=2238;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,37:62:99:1012,0,538:10,15,17,20
chr2	100895081	.	G	A	1553.35	PASS	AC=1;AF=0.675;AN=2;DP=2450;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:583,0,506:13,9,13,9
chr2	100895411	.	A	C	501.27	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=2.555;FractionInformativeReads=1;MQ=60;MQRankSum=-2.099;QD=10.44;ReadPosRankSum=-1.06;SOR=0.399;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:530,0,856:8,19,8,13
chr2	100895729	.	T	A	1045.88	PASS	AC=1;AF=0.5;AN=2;DP=205;MQ=60;set=variant18-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,42:77:99:1097,0,1096:25,10,24,18
chr2	100895784	.	ACC	AC,A	1255.44	PASS	AC=1,0;AF=0.726,0.012;AN=2;DP=3418;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:71:99:15,16,21,19
chr2	100895872	.	G	A	2318.19	PASS	AC=1;AF=0.725;AN=2;DP=3810;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,49:84:99:1347,0,1165:9,26,23,26
chr2	100896110	.	T	C	3216.09	PASS	AC=1;AF=0.725;AN=2;DP=2807;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,33:67:99:1252,0,2050:14,20,13,20
chr2	100896112	.	C	T	3216.09	PASS	AC=1;AF=0.725;AN=2;DP=2780;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,32:66:99:1252,0,2050:14,20,12,20
chr2	100896242	.	A	G	1612.02	PASS	AC=1;AF=0.725;AN=2;DP=2691;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,44:83:99:1149,0,932:20,19,27,17
chr2	100896311	.	G	T	1891.03	PASS	AC=1;AF=0.725;AN=2;DP=2983;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,55:99:99:1381,0,1092:21,23,30,25
chr2	100896376	.	G	C	1550.22	PASS	AC=1;AF=0.725;AN=2;DP=2457;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,29:66:99:700,0,967:16,21,13,16
chr2	100896415	.	C	T	1837.96	PASS	AC=1;AF=0.725;AN=2;DP=2255;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,24:60:99:680,0,949:14,22,8,16
chr2	100896512	.	G	A	1501.15	PASS	AC=1;AF=0.725;AN=2;DP=2041;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,22:53:99:602,0,785:15,16,9,13
chr2	100896964	.	A	G	331.77	PASS	AC=1;AF=0.738;AN=2;DP=533;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:189,0,356:0,7,2,3
chr2	100896966	.	G	A	331.77	PASS	AC=1;AF=0.725;AN=2;DP=498;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:189,0,356:0,7,2,3
chr2	100897214	.	G	A	2117.35	PASS	AC=1;AF=0.725;AN=2;DP=2072;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:608,0,922:22,8,17,7
chr2	100897351	.	T	A	8594.84	PASS	AC=1;AF=0.725;AN=2;DP=11946;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:131,119:250:99:2802,0,3125:71,60,68,51
chr2	100897573	.	G	A	8689	PASS	AC=1;AF=0.725;AN=2;DP=12602;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:161,126:287:99:3174,0,3963:77,84,54,72
chr2	100897674	.	T	A	5188.8	PASS	AC=1;AF=0.744;AN=2;DP=6311;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,75:155:99:1934,0,2228:30,50,28,47
chr2	100897739	.	GTTTT	G	5160.92	PASS	AC=1;AF=0.725;AN=2;DP=5034;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,54:110:99:2018,0,2060:25,31,29,25
chr2	100898634	.	G	T	1281.89	PASS	AC=1;AF=0.725;AN=2;DP=2012;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,22:54:99:483,0,953:14,18,11,11
chr2	100899258	.	GAAAACTAAAAGAAAAATTAATAATATTATAA	G	447.44	PASS	AC=1;AF=0.75;AN=2;DP=4370;set=variant-variant2-variant3-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-filterInvariant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,8:69:99:169,0,2717:16,45,0,8
chr2	100899292	.	TCTTTATCTACTGAAACTAC	T	453.26	PASS	AC=1;AF=0.744;AN=2;DP=3750;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,8:56:99:210,0,2216:12,36,0,8
chr2	100899328	.	T	TA	393.96	PASS	AC=1;AF=0.744;AN=2;DP=2653;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,8:46:99:228,0,1648:11,27,0,8
chr2	100899665	.	G	A	7126.25	PASS	AC=1;AF=0.725;AN=2;DP=8954;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:145,100:245:99:2411,0,3789:83,62,58,42
chr2	100899676	.	T	C	8273.52	PASS	AC=1;AF=0.725;AN=2;DP=10125;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,112:272:99:2715,0,4012:93,67,67,45
chr2	100900038	.	AAT	AATAT,A	2418.99	PASS	AC=1,0;AF=0.488,0.012;AN=2;DP=6076;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:90:99:19,43,4,24
chr2	100900304	.	T	C	1813.59	PASS	AC=1;AF=0.738;AN=2;DP=2595;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:703,0,519:9,11,15,10
chr2	100900406	.	G	A	1564.56	PASS	AC=1;AF=0.744;AN=2;DP=3246;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,50:74:99:1197,0,454:11,13,26,24
chr2	100906932	.	C	T	446.46	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.902;QD=12.4;ReadPosRankSum=-0.744;SOR=0.947;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,18:36:99:475,0,446:6,12,5,13
chr2	100915629	.	T	C	1913.99	PASS	AC=1;AF=0.726;AN=2;DP=2774;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,42:77:99:1094,0,867:21,14,22,20
chr2	100915772	.	A	G	2008.14	PASS	AC=1;AF=0.726;AN=2;DP=2794;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,33:59:99:876,0,739:9,17,12,21
chr2	100916051	.	T	C	160.45	PASS	AC=1;AF=0.79;AN=2;DP=206;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:28:126,0,28:1,0,3,2
chr2	100916306	.	A	G	1103.52	PASS	AC=1;AF=0.726;AN=2;DP=1913;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,15:42:99:303,0,665:14,13,6,9
chr2	100925934	.	C	A	169.59	PASS	AC=1;AF=0.717;AN=2;DP=689;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-filterInvariant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,5:22:68:68,0,498:12,5,3,2
chr2	100938226	.	G	C	336.35	PASS	AC=1;AF=0.731;AN=2;DP=366;MQ=60;set=variant-variant5-variant6-variant7-variant8-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:226,0,248:5,4,3,5
chr2	100938241	.	G	A	350.17	PASS	AC=1;AF=0.55;AN=2;DP=263;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant11-variant14-variant16-variant17-variant18-variant21-variant22-variant28-variant29-variant31-variant33-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:311,0,176:4,3,4,6
chr2	100938328	.	T	C	377.99	PASS	AC=1;AF=0.74;AN=2;DP=275;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant8-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:75:226,0,75:2,2,4,4
chr2	100938481	.	C	G	880.07	PASS	AC=1;AF=0.7;AN=2;DP=1419;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:489,0,538:13,10,12,9
chr2	100938917	.	G	C	4295.11	PASS	AC=1;AF=0.683;AN=2;DP=5991;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,99:214:99:2209,0,2684:56,59,54,45
chr2	100938952	.	T	C	4531.6	PASS	AC=1;AF=0.7;AN=2;DP=5951;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:106,97:203:99:2199,0,2637:52,54,52,45
chr2	100939117	.	A	G	2831.26	PASS	AC=1;AF=0.719;AN=2;DP=3479;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,53:108:99:1370,0,1490:18,37,22,31
chr2	100986964	.	A	C	1780.38	PASS	AC=1;AF=0.762;AN=2;DP=1855;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,22:40:99:577,0,429:7,11,8,14
chr2	101009326	.	T	C	1246.71	PASS	AC=1;AF=0.727;AN=2;DP=1761;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,22:65:99:533,0,1066:20,23,8,14
chr2	101009600	.	G	A	1830.36	PASS	AC=1;AF=0.717;AN=2;DP=2134;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,26:65:99:745,0,964:17,22,15,11
chr2	101010082	.	G	C	6128.22	PASS	AC=1;AF=0.727;AN=2;DP=6206;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,102:187:99:2651,0,2024:37,48,41,61
chr2	101011724	.	C	T	740.29	PASS	AC=1;AF=0.721;AN=2;DP=837;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,10:30:99:239,0,434:12,8,6,4
chr2	101011877	.	T	C	3378.2	PASS	AC=1;AF=0.717;AN=2;DP=2822;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,52:85:99:1546,0,794:19,14,36,16
chr2	101014247	.	C	A	503.73	PASS	AC=1;AF=0.734;AN=2;DP=711;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,18:26:99:509,0,235:7,1,13,5
chr2	101022886	.	C	T	946.53	PASS	AC=1;AF=0.717;AN=2;DP=660;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:415,0,212:5,1,9,3
chr2	101033756	.	C	T	306.41	PASS	AC=2;AF=0.907;AN=2;DP=736;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:47:475,47,0:0,0,10,6
chr2	101093567	.	A	T	72.92	PASS	AC=1;AF=0.5;AN=2;DP=26;FractionInformativeReads=1;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:291,0,294:8,1,7,3
chr2	101095733	.	A	G	665.94	PASS	AC=1;AF=0.536;AN=2;DP=1066;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,31:70:99:743,0,1029:23,16,15,16
chr2	101096802	.	A	G	886.78	PASS	AC=1;AF=0.536;AN=2;DP=1080;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,32:73:99:731,0,1152:25,16,20,12
chr2	101096860	.	T	C	1076.58	PASS	AC=1;AF=0.536;AN=2;DP=1583;MQ=60;set=variant8-variant12-variant14-variant15-variant17-variant19-variant20-variant26-variant31-variant33-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:65,48:113:99:1018,0,1526:33,32,27,21
chr2	101096960	.	C	T	2216.69	PASS	AC=1;AF=0.71;AN=2;DP=2445;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,32:76:99:749,0,1153:17,27,11,21
chr2	101098643	.	G	A	340.37	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,20:30:99:555,0,304:8,2,15,5
chr2	101098715	.	A	G	734.85	PASS	AC=1;AF=0.5;AN=2;DP=148;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,36:76:99:900,0,1056:26,14,18,18
chr2	101099667	.	C	T	902.26	PASS	AC=1;AF=0.5;AN=2;DP=167;FractionInformativeReads=1;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,32:79:99:818,0,1152:27,20,15,17
chr2	101125602	.	C	T	586.44	PASS	AC=1;AF=0.5;AN=2;DP=113;FractionInformativeReads=1;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,24:61:99:684,0,1025:27,10,18,6
chr2	101126124	.	T	A	7735.36	PASS	AC=2;AF=0.898;AN=2;DP=11299;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,237:237:99:7905,709,0:0,0,108,129
chr2	101179341	.	A	G	8513.93	PASS	AC=1;AF=0.672;AN=2;DP=7874;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,118:209:99:3082,0,2102:52,39,62,56
chr2	101182973	.	C	T	289.37	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=4.242;FractionInformativeReads=1;MQ=60;MQRankSum=1.479;QD=15.23;ReadPosRankSum=-1.056;SOR=1.356;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:318,0,137:3,4,8,4
chr2	101185189	.	T	G	7415.14	PASS	AC=1;AF=0.656;AN=2;DP=6275;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,107:199:99:3223,0,2669:72,20,85,22
chr2	101186088	.	C	T	4347.28	PASS	AC=1;AF=0.643;AN=2;DP=2766;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant33-variant34-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,53:90:99:1522,0,917:15,22,22,31
chr2	101188373	.	C	CCTGTGTATGAGTGA	8869.76	PASS	AC=1;AF=0.643;AN=2;DP=5388;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant33-variant34-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,56:152:99:2190,0,5572:49,47,30,26
chr2	101188525	.	T	C	1747.65	PASS	AC=1;AF=0.5;AN=2;DP=127;FS=5.648;FractionInformativeReads=1;MQ=60;MQRankSum=-0.703;QD=13.76;ReadPosRankSum=2.348;SOR=0.358;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,72:127:99:1776,0,1330:18,37,31,41
chr2	101437561	.	G	A	1086.07	PASS	AC=1;AF=0.577;AN=2;DP=1296;MQ=60;set=variant8-variant10-variant15-variant18-variant20-variant26-variant29-variant32-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,42:97:99:1056,0,1209:27,28,21,21
chr2	101437601	.	C	G	1213.12	PASS	AC=1;AF=0.577;AN=2;DP=1377;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant15-variant18-variant20-variant26-variant29-variant32-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,46:98:99:1070,0,1221:23,29,19,27
chr2	101437762	.	A	G	525.04	PASS	AC=1;AF=0.577;AN=2;DP=489;FractionInformativeReads=1;MQ=60;set=variant8-variant10-variant15-variant18-variant20-variant26-variant29-variant32-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:23,18:41:99:473,0,540:11,12,7,11
chr2	101520972	.	A	AT	432.93	PASS	AC=2;AF=0.907;AN=2;DP=675;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:780,63,0:0,0,17,4
chr2	101521173	.	ATTT	AT,ATT,A,ATTTT	665.56	PASS	AC=0,1,0,0;AF=0.337,0.302,0.012,0.012;AN=2;DP=2101;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:22:22:4,7,4,7
chr2	101541798	.	C	T	1986.79	PASS	AC=2;AF=0.932;AN=2;DP=3552;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2641,246,0:0,0,28,54
chr2	101564628	.	A	G,C	1270.53	PASS	AC=1,0;AF=0.646,0.049;AN=2;DP=3877;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:95:99:30,23,25,17
chr2	101566070	.	C	T	670.34	PASS	AC=1;AF=0.689;AN=2;DP=1749;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:554,0,655:8,17,7,13
chr2	101581246	.	C	T	2324.75	PASS	AC=2;AF=0.898;AN=2;DP=3276;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2263,225,0:0,0,46,29
chr2	101581934	.	CA	C	263.05	PASS	AC=2;AF=0.75;AN=2;DP=1072;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:687,72,0:0,0,16,8
chr2	101581976	.	A	G	722.4	PASS	AC=2;AF=0.786;AN=2;DP=1912;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1567,126,0:0,0,32,10
chr2	101587455	.	C	T	1083.89	PASS	AC=2;AF=0.542;AN=2;DP=1023;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant13-variant17-variant23-variant28-variant31-variant32-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3006,305,0:0,0,55,47
chr2	101591304	.	A	G	885.05	PASS	AC=2;AF=0.75;AN=2;DP=4365;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:2971,300,0:0,0,53,47
chr2	101591443	.	A	C	477.79	PASS	AC=2;AF=0.528;AN=2;DP=819;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant8-variant13-variant17-variant19-variant21-variant23-variant28-variant29-variant30-variant31-variant32-variant34-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1730,162,0:0,0,18,36
chr2	101591844	.	G	T	1312.12	PASS	AC=1;AF=0.5;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:79,97:176:99:2596,0,2017:48,31,59,38
chr2	101594454	.	T	C	50.66	PASS	AC=2;AF=0.542;AN=2;DP=344;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant13-variant17-variant23-variant28-variant31-variant32-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1220,99,0:0,0,5,28
chr2	101598677	.	C	T	1924.07	PASS	AC=2;AF=0.553;AN=2;DP=2861;MQ=60;set=variant6-variant7-variant8-variant10-variant13-variant15-variant16-variant17-variant21-variant23-variant24-variant26-variant27-variant28-variant31-variant32-variant34-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,149:150:99:4427,438,0:0,1,86,63
chr2	101612051	.	G	A	1397.2	PASS	AC=1;AF=0.595;AN=2;DP=1639;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,24:56:99:680,0,1061:17,15,11,13
chr2	101612615	.	T	C	3364.14	PASS	AC=1;AF=0.788;AN=2;DP=5210;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,65:120:99:1467,0,1265:27,28,31,34
chr2	101618219	.	A	G	1033.54	PASS	AC=1;AF=0.596;AN=2;DP=2511;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant28-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,53:101:99:1221,0,1078:24,24,33,20
chr2	101619283	.	C	G	6194.7	PASS	AC=2;AF=0.893;AN=2;DP=9830;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,220:220:99:6444,658,0:0,0,110,110
chr2	101619321	.	T	C	6491.53	PASS	AC=1;AF=0.813;AN=2;DP=9996;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:115,110:225:99:2446,0,2590:56,59,51,59
chr2	101620856	.	TAA	TA,T	1129.58	PASS	AC=1,0;AF=0.571,0.024;AN=2;DP=2222;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:56:99:13,19,11,13
chr2	101621569	.	C	T	437.25	PASS	AC=1;AF=0.595;AN=2;DP=908;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:575,0,674:12,10,10,11
chr2	101622231	.	C	T	1014.4	PASS	AC=1;AF=0.5;AN=2;DP=194;FractionInformativeReads=1;MQ=60;set=variant18-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:810,0,529:11,13,15,16
chr2	101622696	.	T	TG	4611.88	PASS	AC=1;AF=0.595;AN=2;DP=7336;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:151,162:313:99:4538,0,4245:77,74,85,77
chr2	101623611	.	A	C	1438.12	PASS	AC=1;AF=0.556;AN=2;DP=1180;MQ=60;set=variant10-variant13-variant15-variant16-variant24-variant26-variant27-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:79,57:136:99:1293,0,2234:43,36,27,30
chr2	101624471	.	T	C	3944.6	PASS	AC=1;AF=0.788;AN=2;DP=8071;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:125,80:205:99:2121,0,3159:61,64,43,37
chr2	101627343	.	CA	C,CAA	475.37	PASS	AC=1,0;AF=0.52,0.02;AN=2;DP=984;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-filterInvariant21-variant24-variant25-variant26-variant27-variant28-filterInvariant32-variant36-variant37-variant39-filterInvariant41-variant42-variant44	GT:DP:GQ:SB	0/1:43:99:20,13,7,3
chr2	101627852	.	C	T	192.16	PASS	AC=1;AF=0.595;AN=2;DP=397;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant24-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:228,0,316:8,2,5,4
chr2	101638888	.	A	G	2440.5	PASS	AC=1;AF=0.825;AN=2;DP=4364;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,57:97:99:1528,0,913:20,20,31,26
chr2	101644496	.	C	T	1183.34	PASS	AC=1;AF=0.5;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant13-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,65:125:99:1499,0,1465:33,27,32,33
chr2	101646144	.	G	A	1631.89	PASS	AC=1;AF=0.6;AN=2;DP=3454;set=variant-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant15-variant17-variant24-variant25-variant26-variant27-variant28-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,98:175:99:2489,0,1923:29,48,41,57
chr2	101652733	.	G	A	480.84	PASS	AC=1;AF=0.5;AN=2;DP=456;MQ=60;set=variant6-variant7-variant17-variant18-variant22-variant31-variant32-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:967,0,889:5,24,9,25
chr2	101656726	.	T	C	1386.51	PASS	AC=1;AF=0.788;AN=2;DP=4498;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,41:88:99:1087,0,1201:21,26,15,26
chr2	101869296	.	G	T	967.65	PASS	AC=1;AF=0.5;AN=2;DP=91;FS=1.699;FractionInformativeReads=1;MQ=60;MQRankSum=0.568;QD=10.63;ReadPosRankSum=1.647;SOR=0.506;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,45:91:99:996,0,1121:26,20,23,22
chr2	101879023	.	G	A	1693.87	PASS	AC=1;AF=0.5;AN=2;DP=800;FractionInformativeReads=1;MQ=60;set=variant3-variant13-variant35-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,74:130:99:1957,0,1255:30,26,42,32
chr2	101881539	.	CT	C	103.95	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=0.619;MQ=60;MQRankSum=1.493;QD=4.95;ReadPosRankSum=0.101;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:141,0,162:2,5,2,4
chr2	101883027	.	T	C	247.6	PASS	AC=1;AF=0.563;AN=2;DP=359;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant11-variant12-variant13-variant15-variant16-variant18-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:324,0,753:10,0,7,2
chr2	101883046	.	A	G	347.03	PASS	AC=1;AF=0.672;AN=2;DP=605;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,8:24:99:268,0,907:12,4,5,3
chr2	101889677	.	G	A	368.57	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=7.048;FractionInformativeReads=1;MQ=60;MQRankSum=0.467;QD=14.18;ReadPosRankSum=-0.986;SOR=0.105;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:397,0,367:10,1,10,5
chr2	101889938	.	CTT	CT,C,CTTT,CTTTTT	76.09	PASS	AC=0,0,0,1;AF=0.393,0.036,0.054,0.036;AN=2;DP=1288;set=filterInvariant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-variant7-filterInvariant8-variant10-filterInvariant12-filterInvariant13-variant14-filterInvariant17-filterInvariant19-variant21-filterInvariant24-filterInvariant25-filterInvariant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-filterInvariant37-variant41	GT:DP:GQ:SB	0/4:15:99:0,9,1,5
chr2	101898412	.	G	C	2408.65	PASS	AC=2;AF=0.864;AN=2;DP=3273;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1935,183,0:0,0,33,28
chr2	101925026	.	T	C	4044.61	PASS	AC=2;AF=0.672;AN=2;DP=10006;MQ=60;set=variant2-variant3-variant5-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,280:280:99:8886,840,0:0,0,123,157
chr2	101965147	.	A	T	659.09	PASS	AC=1;AF=0.5;AN=2;DP=1143;MQ=60;set=variant2-variant3-variant12-variant13-variant16-variant18-variant22-variant27-variant29-variant30-variant35-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,31:76:99:621,0,1719:32,13,23,8
chr2	101965148	.	A	T	897.93	PASS	AC=1;AF=0.5;AN=2;DP=326;MQ=60;set=variant13-variant29-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,33:77:99:962,0,1665:31,13,24,9
chr2	101965367	.	G	A	9391	PASS	AC=2;AF=0.909;AN=2;DP=9558;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,223:225:99:6776,594,0:2,0,94,129
chr2	101965861	.	C	T	1661.6	PASS	AC=1;AF=0.5;AN=2;DP=1675;MQ=60;set=variant2-variant3-variant12-variant13-variant16-variant18-variant22-variant27-variant29-variant30-variant35-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,59:127:99:1655,0,2089:35,33,34,25
chr2	101966088	.	A	G	2827.85	PASS	AC=1;AF=0.5;AN=2;DP=219;FS=3.061;FractionInformativeReads=0.995;MQ=60;MQRankSum=-1.767;QD=12.91;ReadPosRankSum=-1.512;SOR=0.497;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:109,109:218:99:2856,0,2819:44,65,50,59
chr2	101966141	.	G	A	2028.63	PASS	AC=1;AF=0.5;AN=2;DP=151;FS=2.89;FractionInformativeReads=1;MQ=60;MQRankSum=1.158;QD=13.43;ReadPosRankSum=1.351;SOR=0.971;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,71:151:99:2057,0,2368:40,40,31,40
chr2	101966559	.	G	T	1352.02	PASS	AC=1;AF=0.5;AN=2;DP=142;FS=1.338;FractionInformativeReads=1;MQ=60;MQRankSum=-0.567;QD=9.52;ReadPosRankSum=0.948;SOR=0.57;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:83,59:142:99:1380,0,2143:38,45,29,30
chr2	102018908	.	A	G	4004.91	PASS	AC=1;AF=0.681;AN=2;DP=4891;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:78,61:139:99:1509,0,1956:40,38,30,31
chr2	102027087	.	C	T	718.18	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=0.879;FractionInformativeReads=1;MQ=60;MQRankSum=-1.867;QD=9.45;ReadPosRankSum=1.659;SOR=0.534;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,36:76:99:746,0,1134:16,24,16,20
chr2	102031176	.	A	G	1275.61	PASS	AC=1;AF=0.989;AN=2;DP=1445;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:577,0,556:14,5,15,8
chr2	102033867	.	T	C	238.54	PASS	AC=2;AF=0.988;AN=2;DP=240;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.72;ReadPosRankSum=0.72;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:361,27,0:0,0,8,1
chr2	102038849	.	T	A	5254.03	PASS	AC=2;AF=0.989;AN=2;DP=7316;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:4720,504,0:0,0,75,94
chr2	102045328	.	C	T	1654.14	PASS	AC=1;AF=0.742;AN=2;DP=1124;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:354,0,487:13,3,9,2
chr2	102045607	.	C	T	357.98	PASS	AC=1;AF=0.6;AN=2;DP=226;FractionInformativeReads=1;MQ=60;set=variant23-variant28-variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,19:51:99:549,0,882:11,21,3,16
chr2	102066981	.	C	T	529.28	PASS	AC=1;AF=0.563;AN=2;DP=329;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant12-variant14-variant15-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:511,0,630:15,9,12,5
chr2	102067083	.	T	C	1790.74	PASS	AC=1;AF=0.857;AN=2;DP=2931;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,44:79:99:1045,0,834:17,18,23,21
chr2	102083183	.	T	C	2159.24	PASS	AC=2;AF=0.73;AN=2;DP=1966;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1726,165,0:0,0,33,22
chr2	102091075	.	G	A	1340.18	PASS	AC=2;AF=0.716;AN=2;DP=3741;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2258,231,0:0,0,41,36
chr2	102091108	.	A	G	1222.88	PASS	AC=1;AF=0.5;AN=2;DP=195;FractionInformativeReads=1;MQ=60;set=variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,40:86:99:892,0,1081:25,21,18,22
chr2	102314391	.	C	CCCG	1387.15	PASS	AC=1;AF=0.646;AN=2;DP=1176;MQ=60;set=variant-variant2-variant5-variant6-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant33-variant35-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,28:62:99:1089,0,1426:24,10,22,6
chr2	102314437	.	T	C	1986.88	PASS	AC=1;AF=0.782;AN=2;DP=5584;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,81:139:99:2152,0,1349:39,19,54,27
chr2	102440723	.	G	A	211.36	PASS	AC=2;AF=0.888;AN=2;DP=394;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:183,24,0:0,0,4,4
chr2	102450731	.	C	A	752.2	PASS	AC=1;AF=0.607;AN=2;DP=506;FractionInformativeReads=1;set=variant-variant2-variant5-variant8-variant12-variant14-variant21-variant24-variant26-variant33-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:471,0,340:8,3,12,2
chr2	102472459	.	A	G	203.95	PASS	AC=1;AF=0.607;AN=2;DP=799;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant8-variant12-variant14-variant21-variant24-variant26-variant33-variant35-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,20:50:99:521,0,847:20,10,12,8
chr2	102508146	.	G	A	1369.39	PASS	AC=1;AF=0.662;AN=2;DP=3709;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant23-variant24-variant26-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,36:87:99:975,0,1383:30,21,20,16
chr2	102508659	.	A	AT	2947.96	PASS	AC=1;AF=0.594;AN=2;DP=4783;MQ=60;set=variant-variant2-variant4-variant5-variant8-variant12-variant14-variant21-variant24-variant26-variant33-variant35-variant36-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:115,142:257:99:3151,0,2440:56,59,68,74
chr2	102632582	.	T	A	422.79	PASS	AC=1;AF=0.649;AN=2;DP=915;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:292,0,347:1,8,3,7
chr2	102641201	.	A	G	718.68	PASS	AC=1;AF=0.5;AN=2;DP=1218;MQ=60;set=variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant33-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:947,0,1150:15,24,12,20
chr2	102641264	.	T	A	653.09	PASS	AC=1;AF=0.5;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant14-variant30-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,33:49:99:931,0,439:5,11,14,19
chr2	102642558	.	G	GT	393.76	PASS	AC=1;AF=0.5;AN=2;DP=496;MQ=60;set=variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:428,0,552:16,6,17,1
chr2	102721116	.	G	A	716.55	PASS	AC=1;AF=0.5;AN=2;DP=1098;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant14-variant15-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant32-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:718,0,510:11,12,15,13
chr2	102721211	.	T	A	334.81	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.494;QD=7.44;ReadPosRankSum=0.975;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,15:45:99:363,0,828:15,15,7,8
chr2	102721308	.	G	T	115.87	PASS	AC=1;AF=0.5;AN=2;DP=374;MQ=60;set=variant2-variant4-variant8-variant11-variant14-variant15-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant32-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:411,0,251:5,6,7,9
chr2	102759293	.	A	C	44.34	PASS	AC=2;AF=0.825;AN=2;DP=562;FractionInformativeReads=1;MQ=60;set=filterInvariant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:396,30,0:0,0,9,1
chr2	102759381	.	A	T	1010.01	PASS	AC=1;AF=0.641;AN=2;DP=1984;MQ=60;set=variant3-variant5-variant7-variant8-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,20:63:99:362,0,933:25,18,12,8
chr2	102770383	.	G	A	354.02	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.249;QD=7.7;ReadPosRankSum=1.542;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,18:46:99:382,0,620:14,14,9,9
chr2	102782433	.	T	A	636.32	PASS	AC=1;AF=0.596;AN=2;DP=678;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant7-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:419,0,495:13,2,10,5
chr2	102785158	.	G	T	385.46	PASS	AC=1;AF=0.528;AN=2;DP=761;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant20-variant21-variant26-filterInvariant28-variant29-variant31-variant33-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,21:38:99:619,0,399:6,11,6,15
chr2	102788409	.	G	A	3296.81	PASS	AC=2;AF=0.989;AN=2;DP=4160;MQ=60;MQRankSum=0.189;ReadPosRankSum=-0.456;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2936,270,0:0,0,32,58
chr2	102788491	.	CTTTTT	CTT,CT,CTTT,CTTTTTTTT,CTTTTTTT,C,CTTTTTT	54.11	PASS	AC=1,0,0,0,0,0,0;AF=0.206,0.059,0.118,0.029,0.059,0.059,0.029;AN=2;DP=359;set=variant-variant2-variant6-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant24-variant29-filterInvariant31-variant34-variant36-variant38-variant41	GT:DP:GQ:SB	0/1:9:93:0,5,0,4
chr2	102792760	.	A	G	1815.58	PASS	AC=1;AF=0.575;AN=2;DP=3271;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant15-variant19-variant20-variant21-variant26-variant28-variant29-variant31-variant33-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,67:139:99:1640,0,1596:38,34,41,26
chr2	102793221	.	A	G	2205.27	PASS	AC=1;AF=0.5;AN=2;DP=195;FS=1.143;FractionInformativeReads=1;MQ=60;MQRankSum=-0.369;QD=11.31;ReadPosRankSum=-0.083;SOR=0.813;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:108,87:195:99:2233,0,2780:44,64,33,54
chr2	102794282	.	G	A	1443.41	PASS	AC=1;AF=0.6;AN=2;DP=3024;MQ=60;set=variant3-variant5-variant7-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,50:112:99:1215,0,1707:33,29,29,21
chr2	102804538	.	A	AACC	631.17	PASS	AC=1;AF=0.667;AN=2;DP=1468;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:485,0,929:1,19,1,12
chr2	102817954	.	A	T	884.1	PASS	AC=1;AF=0.587;AN=2;DP=961;MQ=60;set=variant3-variant5-variant7-variant14-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:237,0,498:11,3,8,3
chr2	102828768	.	G	C	237.08	PASS	AC=1;AF=0.595;AN=2;DP=171;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant14-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant30-variant31-variant32-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:157,0,142:0,4,1,4
chr2	102835706	.	T	C	382.95	PASS	AC=1;AF=0.55;AN=2;DP=259;MQ=60;set=variant-variant7-variant8-variant15-variant17-variant20-variant28-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:559,0,783:2,19,4,14
chr2	102842467	.	T	C	1372.76	PASS	AC=1;AF=0.55;AN=2;DP=1181;MQ=60;set=variant-variant7-variant8-variant15-variant17-variant20-variant28-variant34-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,40:95:99:802,0,1210:28,27,20,20
chr2	102849383	.	G	T	1289.03	PASS	AC=1;AF=0.5;AN=2;DP=197;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,53:102:99:1462,0,1343:32,17,30,23
chr2	102851243	.	C	T	208.39	PASS	AC=1;AF=0.595;AN=2;DP=324;FractionInformativeReads=1;set=variant-variant4-variant6-variant8-variant12-variant13-variant15-variant17-variant19-variant20-variant22-variant24-variant27-variant28-variant33-variant34-variant35-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,16:25:99:479,0,304:9,0,12,4
chr2	102851708	.	T	C	429.51	PASS	AC=1;AF=0.531;AN=2;DP=936;MQ=60;set=variant-variant4-variant6-variant8-variant12-variant13-variant15-variant17-variant20-variant24-variant28-variant33-variant34-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,23:54:99:579,0,935:9,22,7,16
chr2	102953617	.	G	T	388.6	PASS	AC=1;AF=0.563;AN=2;DP=169;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant9-variant10-variant19-variant28-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:175,0,321:8,4,5,3
chr2	102954653	.	C	T	3196.59	PASS	AC=1;AF=0.556;AN=2;DP=2393;MQ=60;set=variant3-variant4-variant9-variant10-variant19-variant28-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:113,173:286:99:4406,0,2708:42,71,76,97
chr2	102955468	.	C	A	1298.02	PASS	AC=1;AF=0.632;AN=2;DP=2082;MQ=60;set=variant-variant3-variant4-variant9-variant10-variant11-variant12-variant13-variant14-variant19-variant24-variant28-variant29-variant31-variant34-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,45:90:99:1084,0,1111:20,25,20,25
chr2	102957348	.	C	T	975.06	PASS	AC=1;AF=0.556;AN=2;DP=661;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant9-variant10-variant19-variant28-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,39:62:99:1111,0,672:7,16,11,28
chr2	102957716	.	C	T	3201.62	PASS	AC=1;AF=0.581;AN=2;DP=2477;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant29-variant30-variant31-variant32-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,34:85:99:806,0,1278:25,26,16,18
chr2	102960007	.	G	A	1260.02	PASS	AC=1;AF=0.524;AN=2;DP=2401;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant17-variant18-variant20-variant21-variant22-variant24-variant30-variant31-variant32-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,62:115:99:1542,0,1355:23,30,29,33
chr2	102960210	.	T	A	2192.23	PASS	AC=1;AF=0.556;AN=2;DP=1447;MQ=60;set=variant3-variant4-variant9-variant10-variant19-variant28-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:78,88:166:99:2353,0,2144:46,32,52,36
chr2	102960281	.	C	G	2883.42	PASS	AC=1;AF=0.524;AN=2;DP=6291;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant17-variant18-variant20-variant21-variant22-variant24-variant30-variant31-variant32-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:139,136:275:99:3329,0,3420:74,65,75,61
chr2	102960485	.	A	G	1464.04	PASS	AC=1;AF=0.578;AN=2;DP=1210;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant29-variant30-variant31-variant32-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,14:38:99:400,0,749:8,16,5,9
chr2	102960584	.	C	A	582.32	PASS	AC=1;AF=0.578;AN=2;DP=883;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant29-variant30-variant31-variant32-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,11:26:99:296,0,358:6,9,4,7
chr2	102960824	.	A	G	460.77	PASS	AC=1;AF=0.556;AN=2;DP=673;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant9-variant10-variant12-variant15-variant19-variant22-variant25-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,18:31:99:455,0,288:6,7,10,8
chr2	102962488	.	T	C	2048.61	PASS	AC=1;AF=0.5;AN=2;DP=212;FS=3.925;FractionInformativeReads=1;MQ=60;MQRankSum=-1.312;QD=9.66;ReadPosRankSum=0.353;SOR=0.946;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:121,91:212:99:2077,0,2826:60,61,51,40
chr2	102967928	.	A	G	412.18	PASS	AC=1;AF=0.574;AN=2;DP=1360;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,25:56:99:696,0,1051:28,3,20,5
chr2	102968007	.	G	A	1875.88	PASS	AC=1;AF=0.574;AN=2;DP=4876;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:95,89:184:99:2102,0,2528:61,34,56,33
chr2	102968075	.	T	C	3179.6	PASS	AC=1;AF=0.574;AN=2;DP=7488;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:121,135:256:99:3237,0,2792:59,62,72,63
chr2	102968211	.	C	A	2280.02	PASS	AC=1;AF=0.574;AN=2;DP=3749;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:60,69:129:99:2731,0,2330:27,33,25,44
chr2	102968212	.	A	G	2280.02	PASS	AC=1;AF=0.574;AN=2;DP=3715;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:62,70:132:99:2731,0,2330:27,35,25,45
chr2	102968285	.	T	C	738.69	PASS	AC=1;AF=0.574;AN=2;DP=2166;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,29:78:99:761,0,1259:23,26,8,21
chr2	102968356	.	C	T	1291.73	PASS	AC=1;AF=0.574;AN=2;DP=1631;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,23:54:99:869,0,1320:13,18,10,13
chr2	102968362	.	T	C	1354.47	PASS	AC=1;AF=0.574;AN=2;DP=1635;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,23:57:99:897,0,1381:14,20,11,12
chr2	102972799	.	G	C	825.4	PASS	AC=1;AF=0.574;AN=2;DP=2097;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:36,44:80:99:1094,0,785:16,20,22,22
chr2	102979028	.	C	T	1322.28	PASS	AC=1;AF=0.578;AN=2;DP=1030;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant29-variant30-variant31-variant32-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:331,0,564:15,5,9,5
chr2	102984279	.	T	C	1913.67	PASS	AC=1;AF=0.578;AN=2;DP=1741;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant29-variant30-variant31-variant32-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,33:56:99:828,0,633:16,7,23,10
chr2	102984624	.	C	G	99.52	PASS	AC=1;AF=0.574;AN=2;DP=391;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant15-variant18-variant19-variant22-variant23-variant25-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:191,0,278:1,8,1,6
chr2	102988638	.	G	A	539.49	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=2.681;FractionInformativeReads=1;MQ=60;MQRankSum=0.565;QD=13.16;ReadPosRankSum=0.223;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:568,0,477:9,9,9,14
chr2	103001344	.	A	T	944.68	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=1.621;FractionInformativeReads=1;MQ=60;MQRankSum=-1.325;QD=9.64;ReadPosRankSum=-0.496;SOR=0.883;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,44:98:99:973,0,1205:27,27,24,20
chr2	103001402	.	C	T	1448.11	PASS	AC=2;AF=0.548;AN=2;DP=2180;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant17-variant18-variant20-variant21-variant22-variant24-variant30-variant31-variant32-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2750,280,0:0,0,39,55
chr2	103003265	.	C	A	283.38	PASS	AC=1;AF=0.5;AN=2;DP=374;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant17-variant18-variant20-variant21-variant22-variant24-variant30-variant32-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,18:26:99:485,0,242:7,1,12,6
chr2	103006387	.	A	G	303.07	PASS	AC=2;AF=0.55;AN=2;DP=788;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant17-variant18-variant20-variant22-variant24-variant30-variant31-variant32-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1258,126,0:0,0,25,17
chr2	103013432	.	C	A	901.14	PASS	AC=1;AF=0.5;AN=2;DP=360;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,53:102:99:1332,0,1224:20,29,25,28
chr2	103013749	.	A	G	923.81	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=1.926;FractionInformativeReads=1;MQ=60;MQRankSum=-1.425;QD=12.32;ReadPosRankSum=-0.56;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,33:75:99:952,0,1089:21,21,19,14
chr2	103013962	.	A	C	4087.59	PASS	AC=1;AF=0.525;AN=2;DP=3806;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant17-variant18-variant20-variant22-variant24-variant30-variant31-variant32-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,104:202:99:4047,0,6205:65,33,64,40
chr2	103013963	.	G	C	4087.59	PASS	AC=1;AF=0.525;AN=2;DP=3839;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant17-variant18-variant20-variant22-variant24-variant30-variant31-variant32-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,104:202:99:4047,0,6205:65,33,64,40
chr2	103014302	.	T	G	1263.68	PASS	AC=2;AF=0.55;AN=2;DP=1217;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant17-variant18-variant20-variant22-variant24-variant30-variant31-variant32-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2054,168,0:0,0,27,29
chr2	103014696	.	C	T	907.78	PASS	AC=2;AF=0.802;AN=2;DP=1567;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1542,128,0:0,0,21,22
chr2	103035044	.	A	G	982.81	PASS	AC=2;AF=0.802;AN=2;DP=803;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1066,81,0:0,0,25,2
chr2	103039584	.	A	T	934.12	PASS	AC=2;AF=0.802;AN=2;DP=1625;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1368,117,0:0,0,30,9
chr2	103040247	.	T	TG	895.2	PASS	AC=2;AF=0.802;AN=2;DP=1071;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:99:1478,102,0:0,0,24,8
chr2	103040249	.	C	T	904.24	PASS	AC=2;AF=0.802;AN=2;DP=1119;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1478,102,0:0,0,24,9
chr2	103040945	.	G	A	104.49	PASS	AC=1;AF=0.526;AN=2;DP=418;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant17-variant18-variant20-variant22-variant24-variant30-variant31-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:204,0,543:1,14,0,6
chr2	103059613	.	A	G	3767.96	PASS	AC=2;AF=1;AN=2;DP=4390;FS=0;MQ=60;MQRankSum=0.874;ReadPosRankSum=0.379;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3051,306,0:0,0,54,48
chr2	103063369	.	G	A	926.41	PASS	AC=2;AF=0.802;AN=2;DP=1369;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1120,105,0:0,0,24,11
chr2	103068787	.	G	A	1827.82	PASS	AC=2;AF=0.802;AN=2;DP=3741;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,89:90:99:2943,259,0:0,1,57,32
chr2	103068834	.	T	A	2485.08	PASS	AC=2;AF=0.802;AN=2;DP=5482;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3762,339,0:0,0,70,43
chr2	103089678	.	C	T	33.51	PASS	AC=1;AF=0.536;AN=2;DP=104;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant17-variant18-variant20-variant22-variant23-variant24-variant32-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:177,0,216:5,2,4,2
chr2	103090127	.	C	T	495.65	PASS	AC=2;AF=0.548;AN=2;DP=945;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant17-variant18-variant20-variant22-variant23-variant24-variant30-variant31-variant32-variant37-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1475,135,0:0,0,24,21
chr2	103095072	.	G	A	34.8	PASS	AC=1;AF=0.5;AN=2;DP=19;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:154,0,173:4,1,4,1
chr2	103095404	.	G	A	883.53	PASS	AC=1;AF=0.603;AN=2;DP=4959;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,77:146:99:1705,0,1725:35,34,35,42
chr2	103120179	.	C	T	1349.14	PASS	AC=1;AF=0.55;AN=2;DP=1246;MQ=60;set=variant3-variant4-variant6-variant7-variant15-variant29-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,66:111:99:1769,0,1168:19,26,23,43
chr2	103120232	.	G	A	2821.58	PASS	AC=2;AF=0.788;AN=2;DP=3321;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2372,227,0:0,0,28,48
chr2	103120311	.	G	A	1160.03	PASS	AC=2;AF=0.8;AN=2;DP=1038;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1035,84,0:0,0,5,23
chr2	103120356	.	C	T	412.43	PASS	AC=2;AF=0.816;AN=2;DP=386;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:444,30,0:0,0,0,10
chr2	103121536	.	G	A	154.82	PASS	AC=2;AF=0.742;AN=2;DP=422;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:17:157,17,0:0,0,5,1
chr2	103125182	.	C	T	148.54	PASS	AC=2;AF=0.855;AN=2;DP=168;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:344,24,0:0,0,8,0
chr2	103125457	.	A	G	2991.22	PASS	AC=2;AF=0.8;AN=2;DP=1736;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:2188,150,0:0,0,22,28
chr2	103125466	.	T	C	2921.46	PASS	AC=2;AF=0.8;AN=2;DP=1656;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:2138,144,0:0,0,20,26
chr2	103128866	.	T	C	1254.92	PASS	AC=2;AF=0.813;AN=2;DP=2029;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1668,156,0:0,0,21,31
chr2	103136309	.	T	C	2787	PASS	AC=2;AF=0.813;AN=2;DP=5209;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3588,345,0:0,0,62,53
chr2	103136446	.	T	G	1408.49	PASS	AC=2;AF=0.8;AN=2;DP=1951;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,48:49:99:1479,137,0:0,1,16,32
chr2	103141447	.	A	G	662.4	PASS	AC=1;AF=0.716;AN=2;DP=3008;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:579,0,1015:23,13,14,12
chr2	103141651	.	G	C	658.03	PASS	AC=2;AF=0.825;AN=2;DP=972;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:899,72,0:0,0,4,20
chr2	103142854	.	G	T	917.55	PASS	AC=1;AF=0.5;AN=2;DP=171;FractionInformativeReads=1;MQ=60;set=variant-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,30:90:99:694,0,1722:23,37,11,19
chr2	103142994	.	G	A	127.62	PASS	AC=1;AF=0.55;AN=2;DP=166;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant15-variant29-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:341,0,263:2,7,3,8
chr2	103149100	.	G	A	780.66	PASS	AC=1;AF=0.716;AN=2;DP=2973;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,35:73:99:898,0,1154:15,23,16,19
chr2	103149162	.	A	G	1092.38	PASS	AC=1;AF=0.716;AN=2;DP=2732;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,40:76:99:1179,0,1106:13,23,23,17
chr2	103149182	.	A	G	1130.59	PASS	AC=1;AF=0.716;AN=2;DP=2700;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,39:76:99:1126,0,993:16,21,26,13
chr2	103149520	.	A	T	1605.11	PASS	AC=1;AF=0.545;AN=2;DP=1195;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant15-variant29-variant35-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,55:88:99:1469,0,852:11,22,22,33
chr2	103149698	.	A	C	272.24	PASS	AC=1;AF=0.703;AN=2;DP=1498;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,17:39:99:378,0,495:9,13,6,11
chr2	103236080	.	C	G	152.65	PASS	AC=1;AF=0.6;AN=2;DP=171;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant11-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:282,0,392:10,5,7,3
chr2	103281960	.	A	G	490.23	PASS	AC=2;AF=0.988;AN=2;DP=497;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:343,24,0:0,0,1,7
chr2	103299567	.	G	A	701.16	PASS	AC=1;AF=0.5;AN=2;DP=213;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant17-variant19-variant23-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,17:23:99:608,0,197:6,0,15,2
chr2	103299637	.	T	C	1092.31	PASS	AC=1;AF=0.5;AN=2;DP=641;FractionInformativeReads=1;MQ=60;set=variant10-variant17-variant19-variant23-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,49:86:99:1255,0,966:27,10,32,17
chr2	103300070	.	G	A	484.75	PASS	AC=1;AF=0.5;AN=2;DP=306;MQ=60;set=variant10-variant17-variant19-variant23-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,30:47:99:898,0,466:7,10,9,21
chr2	103300407	.	A	G	466.97	PASS	AC=1;AF=0.5;AN=2;DP=219;MQ=60;set=variant10-variant17-variant19-variant23-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:295,0,443:9,6,8,4
chr2	103300506	.	A	G	1152.38	PASS	AC=1;AF=0.731;AN=2;DP=3614;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:905,0,907:17,16,20,13
chr2	103324575	.	T	C	599.69	PASS	AC=2;AF=0.591;AN=2;DP=764;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant32-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1322,123,0:0,0,31,10
chr2	103326908	.	TAA	T	2779.47	PASS	AC=2;AF=0.591;AN=2;DP=2694;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant32-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:5430,367,0:0,0,65,57
chr2	103327241	.	G	C	1660.18	PASS	AC=1;AF=0.568;AN=2;DP=2988;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant32-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,70:120:99:2174,0,1374:30,20,46,24
chr2	103327476	.	A	G	5756.43	PASS	AC=2;AF=0.798;AN=2;DP=16188;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,376:376:99:12154,1124,0:0,0,187,189
chr2	103333230	.	A	G	2402.65	PASS	AC=1;AF=0.568;AN=2;DP=3848;MQ=60;set=variant4-variant6-variant7-variant10-variant12-variant13-variant15-variant20-variant21-variant22-variant23-variant25-variant26-variant31-variant32-variant33-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,70:161:99:1673,0,2137:46,45,37,33
chr2	103333705	.	A	G	127.62	PASS	AC=2;AF=0.821;AN=2;DP=450;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:524,42,0:0,0,12,2
chr2	103343234	.	G	C	194.35	PASS	AC=2;AF=0.798;AN=2;DP=757;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:83:1027,83,0:0,0,25,3
chr2	103348326	.	T	C	185.43	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=3.01;FractionInformativeReads=1;MQ=60;MQRankSum=-1.247;QD=11.59;ReadPosRankSum=0.271;SOR=1.863;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:214,0,321:8,2,6,0
chr2	103348933	.	T	A	283.59	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.707;QD=12.89;ReadPosRankSum=0.722;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:312,0,307:2,9,2,9
chr2	103348962	.	C	T	162.88	PASS	AC=1;AF=0.5;AN=2;DP=55;FractionInformativeReads=1;MQ=60;set=variant4-variant13-variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:138,0,163:0,5,0,4
chr2	103375056	.	T	G	1464.67	PASS	AC=1;AF=0.63;AN=2;DP=3306;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant34-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,76:114:99:2005,0,945:14,24,33,43
chr2	103378581	.	CT	C	305.07	PASS	AC=1;AF=0.606;AN=2;DP=1369;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-variant7-variant8-variant9-variant10-variant11-filterInvariant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant34-filterInvariant37-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:362,0,281:7,10,14,10
chr2	103378857	.	C	G	1165.62	PASS	AC=1;AF=0.63;AN=2;DP=2500;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant34-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,40:74:99:1279,0,1028:7,27,13,27
chr2	103380671	.	A	C	578.43	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=1.28;FractionInformativeReads=1;MQ=60;MQRankSum=-0.605;QD=12.85;ReadPosRankSum=0.468;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:607,0,705:17,8,15,5
chr2	103431404	.	T	C	9578.13	PASS	AC=2;AF=0.988;AN=2;DP=10956;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,253:254:99:7568,748,0:1,0,124,129
chr2	103432318	.	T	C	6234.7	PASS	AC=1;AF=0.641;AN=2;DP=5084;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:67,79:146:99:2154,0,1816:45,22,49,30
chr2	103432969	.	CAAT	CAATAAT,CAATAATAAT,CAATAATAATAAT,C	173.94	PASS	AC=1,0,0,0;AF=0.395,0.132,0.079,0.026;AN=2;DP=282;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant13-variant14-variant16-variant19-variant21-variant24-variant28-variant34-variant36-variant37-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:14:99:4,3,5,2
chr2	103433624	.	T	A	8351.41	PASS	AC=1;AF=0.611;AN=2;DP=7718;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant27-variant28-variant30-variant34-variant36-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:173,148:321:99:3512,0,4289:72,101,65,83
chr2	104995800	.	C	T	1239.65	PASS	AC=1;AF=0.528;AN=2;DP=2296;FractionInformativeReads=1;MQ=60;set=variant5-variant7-variant8-variant10-variant11-variant12-variant15-variant17-variant18-variant19-variant27-variant30-variant33-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:69,51:120:99:1265,0,1692:34,35,22,29
chr2	105472055	.	T	C	399.59	PASS	AC=1;AF=0.744;AN=2;DP=576;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:156,0,209:4,6,2,5
chr2	105473698	.	G	T	563.64	PASS	AC=1;AF=0.697;AN=2;DP=1705;MQ=60;set=variant3-variant4-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:580,0,601:12,11,13,14
chr2	105475259	.	C	T	4590.64	PASS	AC=1;AF=0.756;AN=2;DP=7778;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,82:155:99:2122,0,1868:33,40,38,44
chr2	105475330	.	A	G	3980.46	PASS	AC=1;AF=0.756;AN=2;DP=6118;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,59:113:99:1549,0,1199:24,30,24,35
chr2	105475594	.	G	GT	3664.32	PASS	AC=2;AF=0.768;AN=2;DP=4673;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3040,301,0:0,0,61,38
chr2	105476225	.	A	G	3876.25	PASS	AC=1;AF=0.756;AN=2;DP=4191;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,52:82:99:1341,0,802:13,17,24,28
chr2	105654446	.	A	G	891.84	PASS	AC=1;AF=0.613;AN=2;DP=3159;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,66:103:99:1685,0,783:19,18,37,29
chr2	105654716	.	C	T	935.02	PASS	AC=1;AF=0.613;AN=2;DP=3986;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,60:116:99:1376,0,1370:22,34,28,32
chr2	105654830	.	G	T	220.9	PASS	AC=1;AF=0.613;AN=2;DP=748;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-filterInvariant8-variant9-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:368,0,459:3,11,3,13
chr2	105665808	.	C	T	984.3	PASS	AC=1;AF=0.579;AN=2;DP=1746;MQ=60;set=variant2-variant3-variant5-variant10-variant12-variant13-variant16-variant18-variant21-variant25-variant27-variant30-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,33:88:99:818,0,1306:23,32,17,16
chr2	105665921	.	GA	G	78.03	PASS	AC=1;AF=0.588;AN=2;DP=264;MQ=60;set=variant2-variant3-variant5-variant10-variant12-variant16-variant21-variant25-variant27-variant30-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:89:252,0,89:0,4,0,9
chr2	105665941	.	GTT	G	70.64	PASS	AC=1;AF=0.588;AN=2;DP=185;MQ=60;set=variant2-variant3-variant5-variant10-variant12-variant16-variant21-variant25-variant27-variant30-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:71:246,0,71:0,2,0,6
chr2	105705507	.	C	T	426.92	PASS	AC=1;AF=0.579;AN=2;DP=1454;MQ=60;set=variant2-variant3-variant5-variant10-variant12-variant13-variant16-variant18-variant21-variant25-variant27-variant30-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,31:77:99:678,0,1159:25,21,18,13
chr2	105706584	.	AAAAAC	A	638.02	PASS	AC=1;AF=0.579;AN=2;DP=761;MQ=60;set=variant2-variant3-variant5-variant10-variant12-variant13-variant16-variant18-variant21-variant25-variant27-variant30-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:460,0,823:3,12,6,6
chr2	105707766	.	G	A	702.28	PASS	AC=1;AF=0.579;AN=2;DP=1823;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant10-variant12-variant13-variant16-variant18-variant21-variant25-variant27-variant30-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,41:99:99:996,0,1456:29,29,17,24
chr2	105709023	.	T	C	2141.59	PASS	AC=2;AF=0.966;AN=2;DP=3513;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2145,204,0:0,0,24,44
chr2	105713697	.	A	G	1124.67	PASS	AC=1;AF=0.579;AN=2;DP=2397;MQ=60;set=variant2-variant3-variant5-variant10-variant12-variant13-variant16-variant18-variant21-variant25-variant27-variant30-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,71:126:99:1826,0,1294:28,27,41,30
chr2	105713868	.	A	G	905.22	PASS	AC=1;AF=0.583;AN=2;DP=1605;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant12-variant13-variant16-variant18-variant21-variant25-variant27-variant30-variant31-variant34-variant35-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:1290,0,1672:11,18,10,24
chr2	105713877	.	T	C	961.53	PASS	AC=1;AF=0.579;AN=2;DP=1117;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant10-variant12-variant13-variant16-variant18-variant21-variant25-variant27-variant30-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:1229,0,1613:10,16,9,23
chr2	105716266	.	A	G	2189.1	PASS	AC=1;AF=0.579;AN=2;DP=2962;MQ=60;set=variant2-variant3-variant5-variant10-variant12-variant13-variant16-variant18-variant21-variant25-variant27-variant30-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,78:153:99:1925,0,1739:42,33,42,36
chr2	105858513	.	C	A	3550.62	PASS	AC=1;AF=0.5;AN=2;DP=263;FS=0.948;FractionInformativeReads=1;MQ=60;MQRankSum=1.749;QD=13.5;ReadPosRankSum=-0.051;SOR=0.76;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:129,134:263:99:3579,0,3305:74,55,79,55
chr2	105882601	.	C	T	760.24	PASS	AC=1;AF=0.5;AN=2;DP=1232;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:43,33:76:99:863,0,1138:26,17,17,16
chr2	105882683	.	C	T	894.25	PASS	AC=1;AF=0.5;AN=2;DP=1370;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,37:92:99:899,0,1279:25,30,16,21
chr2	105882761	.	G	A	892.62	PASS	AC=2;AF=0.542;AN=2;DP=1510;MQ=60;set=variant-variant2-variant7-variant8-variant10-variant13-variant15-variant16-variant17-variant18-variant19-variant23-variant24-variant26-variant30-variant31-variant33-variant34-variant35-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2001,198,0:0,0,27,39
chr2	105883624	.	TTTCCATGTACATTCATAGAGCCTGGTCA	T	2297.15	PASS	AC=1;AF=0.81;AN=2;DP=3267;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,23:70:99:789,0,12243:26,21,11,12
chr2	105886196	.	G	A	501.69	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.397;QD=11.4;ReadPosRankSum=-1.655;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:530,0,823:7,15,8,14
chr2	105886219	.	C	A	324.35	PASS	AC=1;AF=0.5;AN=2;DP=424;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:18,21:39:99:590,0,644:6,12,8,13
chr2	105889804	.	C	A	363.86	PASS	AC=1;AF=0.5;AN=2;DP=377;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,13:23:99:376,0,295:7,3,10,3
chr2	105889970	.	C	T	1490.09	PASS	AC=1;AF=0.5;AN=2;DP=144;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.529;QD=10.35;ReadPosRankSum=0.621;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,64:144:99:1518,0,1990:40,40,32,32
chr2	105893935	.	C	A	255.13	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.289;QD=21.26;ReadPosRankSum=2.18;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:283,0,136:4,0,7,1
chr2	105897261	.	C	T	445.48	PASS	AC=2;AF=0.955;AN=2;DP=1418;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:93:881,93,0:0,0,12,20
chr2	105900904	.	C	T	1012.1	PASS	AC=1;AF=0.5;AN=2;DP=93;FS=3.99;FractionInformativeReads=1;MQ=60;MQRankSum=-1.309;QD=10.88;ReadPosRankSum=0.652;SOR=0.365;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,42:93:99:1040,0,1220:19,32,20,22
chr2	105915128	.	G	A	1040.89	PASS	AC=1;AF=0.536;AN=2;DP=1320;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:35,36:71:99:925,0,1054:8,27,13,23
chr2	105924245	.	C	A	1556.17	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=2.184;FractionInformativeReads=1;MQ=60;MQRankSum=-0.588;QD=11.53;ReadPosRankSum=-1.781;SOR=0.518;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:69,66:135:99:1584,0,1813:41,28,36,30
chr2	105924510	.	A	G	661.85	PASS	AC=2;AF=0.677;AN=2;DP=3389;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3424,303,0:0,0,48,53
chr2	105946163	.	C	T	88.67	PASS	AC=2;AF=0.882;AN=2;DP=109;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant8-variant18-variant19-variant21-variant22-variant24-variant26-variant27-variant29-variant35-variant36-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:99,12,0:0,0,2,2
chr2	105953785	.	C	T	560.14	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=1;FractionInformativeReads=1;MQ=60;MQRankSum=-0.121;QD=9.03;ReadPosRankSum=-2.432;SOR=0.866;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,26:62:99:588,0,859:22,14,17,9
chr2	105953938	.	G	GC	4643.38	PASS	AC=2;AF=0.774;AN=2;DP=5759;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:4555,340,0:0,0,58,55
chr2	105961703	.	G	A	359.31	PASS	AC=2;AF=0.677;AN=2;DP=1296;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant33-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1378,123,0:0,0,28,13
chr2	105962370	.	A	C	434.53	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.921;QD=15.52;ReadPosRankSum=-1.658;SOR=0.874;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:463,0,415:10,3,12,3
chr2	105963601	.	CTG	C	8452.08	PASS	AC=1;AF=0.536;AN=2;DP=6228;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:231,188:419:99:7151,0,9414:119,112,96,92
chr2	105964362	.	T	C	4067.88	PASS	AC=1;AF=0.5;AN=2;DP=359;FS=1.718;FractionInformativeReads=1;MQ=60;MQRankSum=2.066;QD=11.33;ReadPosRankSum=1.094;SOR=0.664;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:178,181:359:99:4096,0,4036:86,92,92,89
chr2	105964462	.	T	TTTC	5288.45	PASS	AC=2;AF=0.774;AN=2;DP=6015;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:5178,354,0:0,0,31,87
chr2	105964984	.	CATATATATATAT	CATATATAT,CATATAT,C,CATATATATAT	42.55	PASS	AC=0,0,0,2;AF=0.25,0.5,0.063,0.125;AN=2;DP=92;FS=0;MQ=60;MQRankSum=1.085;ReadPosRankSum=1.085;set=variant-variant4-variant8-variant17-variant22-variant26-variant29-variant41	GT:DP:GQ:SB	4/4:6:18:0,0,3,3
chr2	105976344	.	A	G	1024.08	PASS	AC=2;AF=0.762;AN=2;DP=1774;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1245,111,0:0,0,14,23
chr2	105977903	.	G	C	499.85	PASS	AC=1;AF=0.536;AN=2;DP=1291;MQ=60;set=variant-variant2-variant8-variant10-variant13-variant15-variant16-variant18-variant19-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:1027,0,1026:16,21,14,21
chr2	105994276	.	T	C	44.5	PASS	AC=2;AF=0.692;AN=2;DP=231;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant35-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:354,30,0:0,0,8,2
chr2	106013216	.	T	C	4622.78	PASS	AC=2;AF=0.775;AN=2;DP=12929;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,282:282:99:8876,844,0:0,0,148,134
chr2	106013248	.	C	T	4973.08	PASS	AC=1;AF=0.609;AN=2;DP=11063;MQ=60;set=variant-variant3-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:149,144:293:99:3561,0,3896:74,75,73,71
chr2	106013313	.	A	G	2731.03	PASS	AC=1;AF=0.5;AN=2;DP=535;FractionInformativeReads=1;MQ=60;set=variant8-variant41	GT:AD:DP:GQ:PL:SB	0/1:141,127:268:99:2918,0,3328:62,79,57,70
chr2	106013467	.	GTTT	G,GTT,GTTTTTTT,GTTTTTT,GTTTT,GTTTTT	66.54	PASS	AC=0,0,0,0,0,2;AF=0.017,0.267,0.033,0.083,0.1,0.117;AN=2;DP=672;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant37-variant40-variant41-variant43	GT:DP:GQ:SB	6/6:10:32:0,0,0,10
chr2	106361607	.	T	C	298.29	PASS	AC=2;AF=0.943;AN=2;DP=918;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:301,36,0:0,0,6,6
chr2	106471327	.	C	A	831.02	PASS	AC=2;AF=0.769;AN=2;DP=1126;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1166,90,0:0,0,26,4
chr2	106471393	.	T	C	2279.48	PASS	AC=2;AF=0.942;AN=2;DP=3518;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2493,240,0:0,0,47,33
chr2	106471825	.	C	CA,CAAA,CAA	466.05	PASS	AC=2,0,0;AF=0.683,0.024,0.122;AN=2;DP=1104;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:18:1:1,1,5,11
chr2	106510191	.	T	TAAAG	4355.95	PASS	AC=2;AF=0.953;AN=2;DP=4233;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:5300,361,0:0,0,70,42
chr2	106510455	.	G	GCA,GCACA	516.29	PASS	AC=2,0;AF=0.343,0.386;AN=2;DP=1190;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:23:1:1,1,12,9
chr2	106679686	.	C	T	291.16	PASS	AC=1;AF=0.633;AN=2;DP=393;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:125,0,357:7,4,4,0
chr2	106679941	.	G	A	1138.57	PASS	AC=1;AF=0.528;AN=2;DP=1676;MQ=60;set=variant-variant4-variant8-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant24-variant27-variant32-variant34-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,52:105:99:1122,0,1195:22,31,24,28
chr2	106680019	.	G	A	1557.64	PASS	AC=2;AF=1;AN=2;DP=1437;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1136,90,0:0,0,7,23
chr2	106682226	.	T	C	2167.43	PASS	AC=1;AF=0.521;AN=2;DP=3163;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant25-variant27-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,58:118:99:2198,0,3267:36,24,35,23
chr2	106682235	.	C	G	2257.04	PASS	AC=1;AF=0.521;AN=2;DP=3421;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant25-variant27-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,65:127:99:2438,0,3332:36,26,40,25
chr2	106682365	.	T	G	2365.47	PASS	AC=1;AF=0.523;AN=2;DP=4668;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant13-variant14-variant15-variant17-variant19-variant20-variant22-variant25-variant27-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:96,135:231:99:3100,0,2107:43,53,66,69
chr2	106709782	.	A	T	376.89	PASS	AC=2;AF=1;AN=2;DP=623;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:679,60,0:0,0,11,9
chr2	106710108	.	C	T	7350.49	PASS	AC=2;AF=1;AN=2;DP=8574;FS=0;MQ=60;MQRankSum=0.507;ReadPosRankSum=0.507;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,207:207:99:6269,620,0:0,0,125,82
chr2	106710668	.	C	CGCAGGAAGGAAGTGCCACCTT	1119.91	PASS	AC=1;AF=0.826;AN=2;DP=2641;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,21:34:99:807,0,2499:3,10,6,15
chr2	106713058	.	C	T	524.22	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=0;FractionInformativeReads=0.969;MQ=60;MQRankSum=-0.02;QD=16.38;ReadPosRankSum=0.099;SOR=0.922;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:552,0,441:12,2,15,2
chr2	106715342	.	G	A,T	938.63	PASS	AC=2,0;AF=0.886,0.114;AN=2;DP=1762;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:37:99:0,0,10,27
chr2	106717171	.	T	C	218.84	PASS	AC=1;AF=0.865;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:73:93,0,73:2,0,3,0
chr2	106717274	.	A	G	965.78	PASS	AC=1;AF=0.818;AN=2;DP=1642;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:340,0,315:8,4,8,2
chr2	106717656	.	G	A	151.77	PASS	AC=1;AF=0.814;AN=2;DP=552;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:231,0,160:0,5,1,5
chr2	106742139	.	C	T	1614.15	PASS	AC=2;AF=1;AN=2;DP=3680;FS=0;MQ=60;MQRankSum=1.37;ReadPosRankSum=-0.806;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2113,218,0:0,0,32,41
chr2	106742177	.	T	A	1567.96	PASS	AC=1;AF=0.966;AN=2;DP=3248;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:37,28:65:99:737,0,904:15,22,12,16
chr2	106754692	.	G	A	916.15	PASS	AC=1;AF=0.5;AN=2;DP=217;FractionInformativeReads=1;MQ=60;set=variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,43:76:99:1161,0,826:20,13,26,17
chr2	106754734	.	A	G	2276.93	PASS	AC=1;AF=0.75;AN=2;DP=4377;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,48:113:99:1178,0,1768:39,26,27,21
chr2	106754846	.	T	C	1011.9	PASS	AC=1;AF=0.5;AN=2;DP=354;FractionInformativeReads=1;MQ=60;set=variant33-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,67:117:99:1718,0,1164:22,28,31,36
chr2	106780015	.	C	T	1328.64	PASS	AC=2;AF=1;AN=2;DP=1426;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:697,63,0:0,0,15,6
chr2	106780055	.	C	CTG	2777.34	PASS	AC=2;AF=1;AN=2;DP=1986;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1665,111,0:0,0,25,11
chr2	106782398	.	C	G	743.54	PASS	AC=2;AF=1;AN=2;DP=1222;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:970,87,0:0,0,19,10
chr2	106810727	.	A	G	10418.4	PASS	AC=2;AF=1;AN=2;DP=14860;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,286:288:99:8239,780,0:2,0,113,173
chr2	106988815	.	A	G	86.49	PASS	AC=2;AF=0.944;AN=2;DP=202;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-filterInvariant7-variant8-variant9-variant11-variant13-filterInvariant14-filterInvariant17-filterInvariant20-variant24-variant25-filterInvariant28-filterInvariant29-filterInvariant30-variant31-variant33-variant36-variant38-filterInvariant39-variant40-variant41-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:311,27,0:0,0,0,9
chr2	107002646	.	G	C	1098.23	PASS	AC=2;AF=0.768;AN=2;DP=1324;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1350,123,0:0,0,30,11
chr2	107007576	.	A	T	811.98	PASS	AC=2;AF=0.692;AN=2;DP=1514;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:944,69,0:0,0,1,22
chr2	107007994	.	TA	T,TAA	341.34	PASS	AC=2,0;AF=0.675,0.013;AN=2;DP=1169;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:29:87:0,0,11,18
chr2	107008058	.	A	G	785.8	PASS	AC=2;AF=0.852;AN=2;DP=283;FractionInformativeReads=1;set=variant2-variant3-variant5-filterInvariant6-filterInvariant9-variant11-variant13-variant16-filterInvariant18-variant19-variant22-filterInvariant23-filterInvariant24-filterInvariant25-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant31-filterInvariant33-filterInvariant35-variant36-variant37-variant38-filterInvariant39-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:261,27,0:0,0,1,8
chr2	107029365	.	T	G	73.79	PASS	AC=1;AF=0.95;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQRankSum=1.231;ReadPosRankSum=1.231;set=variant5-variant8-variant11-filterInvariant24-variant25-variant31-variant35-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:63:70,0,63:1,2,0,2
chr2	107032153	.	A	AAAAAAAAAT	141.55	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=6.812;FractionInformativeReads=1;MQ=49.65;MQRankSum=-2.843;QD=5.9;ReadPosRankSum=-1.066;SOR=0.016;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,5:24:99:179,0,685:19,0,4,1
chr2	107032279	.	T	C	3636.03	PASS	AC=1;AF=0.78;AN=2;DP=6543;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:78,129:207:99:3285,0,1683:45,33,80,49
chr2	107032417	.	A	G	658.09	PASS	AC=1;AF=0.5;AN=2;DP=1192;FractionInformativeReads=1;set=variant4-variant6-variant8-variant11-variant18-variant21-variant22-variant23-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,40:114:99:1037,0,2010:23,51,10,30
chr2	107040219	.	C	G	3693.58	PASS	AC=1;AF=0.5;AN=2;DP=628;FS=1.898;FractionInformativeReads=1;MQ=46.46;MQRankSum=-1.729;QD=5.88;ReadPosRankSum=-1.003;SOR=0.742;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:430,198:628:99:3722,0,10243:222,208,94,104
chr2	107041569	.	T	C	2492.41	PASS	AC=1;AF=0.5;AN=2;DP=425;FS=0.565;FractionInformativeReads=1;MQ=40.56;MQRankSum=0.295;QD=5.86;ReadPosRankSum=-1.012;SOR=0.604;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:294,131:425:99:2521,0,7144:139,155,65,66
chr2	107052831	.	C	T	187.28	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=0;FractionInformativeReads=1;MQ=30.51;MQRankSum=-0.131;QD=3.9;ReadPosRankSum=0.94;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,12:48:99:216,0,970:17,19,5,7
chr2	107053016	.	G	A	614.35	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=128;FS=0.721;FractionInformativeReads=1;MQ=26.81;MQRankSum=-0.143;QD=4.8;ReadPosRankSum=-0.274;SOR=0.813;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:90,38:128:99:643,0,1905:43,47,17,21
chr2	107073469	.	T	A	2277.85	PASS	AC=1;AF=0.692;AN=2;DP=3276;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,34:73:99:707,0,923:24,15,19,15
chr2	107073501	.	C	T	2522.06	PASS	AC=1;AF=0.692;AN=2;DP=3581;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,41:87:99:751,0,988:24,22,19,22
chr2	107075909	.	GT	G	48.98	PASS	AC=1;AF=0.5;AN=2;DP=102;set=variant9-variant15-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:123,0,122:0,5,0,5
chr2	107107694	.	A	G	687.7	PASS	AC=2;AF=1;AN=2;DP=1266;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:92:1005,92,0:0,0,5,26
chr2	107118896	.	T	C	160.68	PASS	AC=2;AF=1;AN=2;DP=1208;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:594,51,0:0,0,13,4
chr2	107118897	.	G	A	161.37	PASS	AC=1;AF=0.5;AN=2;DP=42;FractionInformativeReads=1;set=variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:99:156,0,327:8,4,5,0
chr2	107119136	.	G	C	176.5	PASS	AC=2;AF=1;AN=2;DP=1122;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:650,54,0:0,0,4,14
chr2	107121040	.	T	TA	1711.54	PASS	AC=2;AF=1;AN=2;DP=1657;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:90:855,90,0:0,0,15,14
chr2	107418036	.	T	C	399.49	PASS	AC=1;AF=0.708;AN=2;DP=396;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,13:18:99:365,0,157:5,0,9,4
chr2	107420068	.	TAACAACAAC	TAAC,TAACAAC,T	59.04	PASS	AC=2,0,0;AF=0.134,0.646,0.012;AN=2;DP=651;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:3:9:0,0,2,1
chr2	107420143	.	C	T	409.26	PASS	AC=1;AF=0.711;AN=2;DP=750;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:170,0,318:8,2,5,2
chr2	107420409	.	T	C	4996.99	PASS	AC=1;AF=0.744;AN=2;DP=14314;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,127:285:99:3166,0,4291:96,62,77,50
chr2	107421297	.	CAA	CAAA,CAAAA,CAAAAA,C	1002.71	PASS	AC=0,0,1,0;AF=0.269,0.295,0.051,0.038;AN=2;DP=1516;set=variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/3:37:99:20,2,7,8
chr2	107423188	.	G	A	2630.99	PASS	AC=1;AF=0.697;AN=2;DP=7127;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,100:160:99:2757,0,1702:24,36,39,61
chr2	107423395	.	T	G	847.73	PASS	AC=1;AF=0.75;AN=2;DP=3447;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,28:72:99:647,0,1114:22,22,14,14
chr2	107429570	.	GT	GTT,G	74.02	PASS	AC=1,0;AF=0.419,0.081;AN=2;DP=5575;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-variant14-filterInvariant16-variant20-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant33-filterInvariant34-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:DP:GQ:SB	0/1:111:99:18,67,9,17
chr2	107429801	.	C	T	315.57	PASS	AC=1;AF=0.805;AN=2;DP=1090;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:486,0,147:1,5,3,11
chr2	107446396	.	T	C	504.4	PASS	AC=1;AF=0.837;AN=2;DP=797;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:447,0,169:5,0,11,0
chr2	107446430	.	T	C	863.3	PASS	AC=2;AF=0.852;AN=2;DP=1367;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1403,105,0:0,0,31,4
chr2	107459919	.	C	T	2063.3	PASS	AC=1;AF=0.5;AN=2;DP=353;FractionInformativeReads=1;MQ=60;set=variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,79:154:99:1953,0,1949:32,43,35,44
chr2	107460474	.	T	G	943.97	PASS	AC=1;AF=0.681;AN=2;DP=4161;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,55:119:99:1344,0,1357:29,35,24,31
chr2	107502502	.	G	A	668.43	PASS	AC=1;AF=0.5;AN=2;DP=278;FractionInformativeReads=1;MQ=60;set=variant2-variant20-variant22-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,27:45:99:739,0,363:10,8,17,10
chr2	107502682	.	T	C	1938.92	PASS	AC=2;AF=0.6;AN=2;DP=1057;MQ=60;set=variant2-variant14-variant17-variant20-variant22-variant31-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:4052,288,0:0,0,45,50
chr2	107502705	.	G	A	1707.29	PASS	AC=2;AF=0.6;AN=2;DP=916;MQ=60;set=variant2-variant14-variant17-variant20-variant22-variant31-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3869,271,0:0,0,41,49
chr2	107502829	.	G	A	591.96	PASS	AC=1;AF=0.5;AN=2;DP=210;FractionInformativeReads=1;MQ=60;set=variant2-variant20-variant22-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,21:37:99:628,0,472:7,9,9,12
chr2	107503324	.	C	T	587.2	PASS	AC=2;AF=0.789;AN=2;DP=954;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:50:436,50,0:0,0,10,7
chr2	107503356	.	G	A	447.83	PASS	AC=1;AF=0.571;AN=2;DP=265;MQ=60;set=variant2-variant14-variant20-variant22-variant33-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:518,0,437:8,4,12,7
chr2	107503363	.	G	T	568.09	PASS	AC=1;AF=0.5;AN=2;DP=87;FractionInformativeReads=1;MQ=60;set=variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,13:34:99:319,0,835:14,7,9,4
chr2	107503532	.	A	G	2113.09	PASS	AC=2;AF=0.6;AN=2;DP=1665;MQ=60;set=variant2-variant14-variant17-variant20-variant22-variant31-variant33-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:4246,410,0:0,0,72,65
chr2	108443325	.	T	C	950.21	PASS	AC=2;AF=0.75;AN=2;DP=1380;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:93:1274,93,0:0,0,22,8
chr2	108443328	.	A	T	950.21	PASS	AC=1;AF=0.738;AN=2;DP=1421;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,16:32:99:418,0,504:12,4,11,5
chr2	108443511	.	C	G	2043.16	PASS	AC=2;AF=0.75;AN=2;DP=6169;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4514,387,0:0,0,64,65
chr2	108443557	.	A	G	2035.75	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=0.698;FractionInformativeReads=1;MQ=56.94;MQRankSum=-4.239;QD=17.7;ReadPosRankSum=-0.797;SOR=0.813;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,56:115:99:2064,0,2302:27,32,24,32
chr2	108443567	.	G	A	2302.57	PASS	AC=1;AF=0.738;AN=2;DP=5097;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,51:107:99:1989,0,2233:25,31,20,31
chr2	108443591	.	A	C	2109.33	PASS	AC=2;AF=0.75;AN=2;DP=3983;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:3421,264,0:0,0,29,52
chr2	108443598	.	G	C	1875.42	PASS	AC=1;AF=0.738;AN=2;DP=3677;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,32:70:99:1378,0,1571:13,25,11,21
chr2	108443647	.	C	G	511.77	PASS	AC=2;AF=0.81;AN=2;DP=1404;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:57:852,57,0:0,0,3,15
chr2	108475958	.	A	G	4452.92	PASS	AC=2;AF=0.679;AN=2;DP=9857;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant5-filterInvariant6-variant8-variant9-variant10-variant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-variant21-filterInvariant22-filterInvariant23-variant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant35-variant36-variant37-filterInvariant38-variant39-filterInvariant40-variant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3407,371,0:0,0,57,67
chr2	108479275	.	A	G	172.92	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=97;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:28,13:41:99:258,0,698:22,6,10,3
chr2	108479432	.	G	A	1634.17	DRAGENHardSNP	AC=1;AF=0.738;AN=2;DP=3449;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:60,27:87:99:476,0,1335:21,39,8,19
chr2	108479487	.	A	T	835.5	PASS	AC=1;AF=0.738;AN=2;DP=1538;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant35-variant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:297,0,428:4,13,2,11
chr2	108487097	.	G	A	494.99	DRAGENHardSNP	AC=2;AF=0.792;AN=2;DP=593;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:252,24,0:0,0,8,0
chr2	108487330	.	A	G	3988.11	PASS	AC=2;AF=0.769;AN=2;DP=5445;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2033,198,0:0,0,28,38
chr2	108487826	.	C	T	468.16	DRAGENHardSNP	AC=2;AF=0.886;AN=2;DP=451;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:251,24,0:0,0,1,7
chr2	108487829	.	G	C	435.64	PASS	AC=2;AF=0.886;AN=2;DP=300;FractionInformativeReads=1;set=filterInvariant-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant9-filterInvariant11-filterInvariant12-filterInvariant15-filterInvariant16-filterInvariant19-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant32-filterInvariant37-filterInvariant38-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:15:169,15,0:0,0,0,3
chr2	108496435	.	T	A	1775.19	PASS	AC=2;AF=0.75;AN=2;DP=2461;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:628,54,0:0,0,15,3
chr2	108499667	.	C	T	443.35	PASS	AC=2;AF=0.846;AN=2;DP=424;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-variant27-filterInvariant28-filterInvariant30-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:80,9,0:0,0,1,2
chr2	108520454	.	C	T	55.09	PASS	AC=1;AF=0.5;AN=2;DP=57;FractionInformativeReads=1;set=variant3-variant21-variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:99:105,0,198:4,3,3,0
chr2	108520467	.	A	G	52.1	PASS	AC=1;AF=0.5;AN=2;DP=70;FractionInformativeReads=1;set=variant3-variant21-variant23-variant25-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,226:5,3,3,0
chr2	108622812	.	TTA	T	752.81	PASS	AC=2;AF=0.875;AN=2;DP=1875;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2314,163,0:0,0,12,42
chr2	108627917	.	G	A	8271.95	PASS	AC=2;AF=0.875;AN=2;DP=27575;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,634:635:99:19527,1888,0:1,0,344,290
chr2	108628585	.	T	G	2309.04	PASS	AC=1;AF=0.676;AN=2;DP=4031;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,40:99:99:1522,0,2340:27,32,21,19
chr2	108628586	.	G	T	2309.04	PASS	AC=1;AF=0.676;AN=2;DP=4038;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,41:99:99:1522,0,2340:28,30,22,19
chr2	108628660	.	T	C	1904.11	PASS	AC=1;AF=0.5;AN=2;DP=127;FS=3.186;FractionInformativeReads=1;MQ=60;MQRankSum=1.772;QD=14.99;ReadPosRankSum=-0.027;SOR=0.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,70:127:99:1932,0,1548:33,24,36,34
chr2	108629104	.	G	A	2133.31	PASS	AC=2;AF=0.875;AN=2;DP=6417;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:3993,371,0:0,0,75,49
chr2	108629260	.	A	C	5300.64	PASS	AC=1;AF=0.676;AN=2;DP=13810;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,201:391:99:4743,0,4463:99,91,105,96
chr2	108629508	.	A	T	1377.33	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=1.723;FractionInformativeReads=1;MQ=60;MQRankSum=-0.362;QD=15.48;ReadPosRankSum=-0.279;SOR=0.526;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,52:89:99:1406,0,855:16,21,25,27
chr2	108863767	.	A	C	1599.65	PASS	AC=2;AF=0.757;AN=2;DP=4596;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:2995,303,0:0,0,46,55
chr2	108863898	.	C	T	454.19	PASS	AC=2;AF=0.567;AN=2;DP=396;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant24-variant26-variant27-variant29-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:835,78,0:0,0,7,19
chr2	108869047	.	C	T	429.6	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=1.481;FractionInformativeReads=1;MQ=60;MQRankSum=1.311;QD=10.74;ReadPosRankSum=1.118;SOR=1.23;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,16:40:99:458,0,707:7,17,3,13
chr2	108872071	.	A	G	1708.38	PASS	AC=1;AF=0.5;AN=2;DP=118;FS=0.678;FractionInformativeReads=1;MQ=60;MQRankSum=-0.971;QD=14.48;ReadPosRankSum=-0.232;SOR=0.621;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,63:118:99:1737,0,1364:26,29,31,32
chr2	108875093	.	T	A	506.59	PASS	AC=2;AF=0.567;AN=2;DP=587;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant24-variant26-variant27-variant29-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1073,108,0:0,0,22,14
chr2	108875198	.	G	A	1431.08	PASS	AC=2;AF=0.567;AN=2;DP=1609;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant13-variant24-variant26-variant27-variant29-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2664,245,0:0,0,47,35
chr2	108875244	.	T	C	1560.09	PASS	AC=2;AF=0.619;AN=2;DP=2735;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant24-variant26-variant27-variant29-variant31-variant33-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2937,276,0:0,0,51,41
chr2	108875471	.	G	T	1798.39	PASS	AC=2;AF=0.619;AN=2;DP=3610;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant24-variant26-variant27-variant29-variant31-variant33-variant35-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,138:138:99:4375,413,0:0,0,62,76
chr2	108876948	.	C	T	70.21	PASS	AC=2;AF=0.722;AN=2;DP=449;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:313,24,0:0,0,6,2
chr2	108877062	.	T	A	680.67	PASS	AC=2;AF=0.722;AN=2;DP=3057;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2691,255,0:0,0,52,33
chr2	108905030	.	C	T	421.42	PASS	AC=2;AF=0.72;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,8:9:17:271,17,0:1,0,6,2
chr2	108905048	.	T	C	196.42	PASS	AC=2;AF=0.559;AN=2;DP=206;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant9-variant10-variant13-variant26-variant27-variant28-variant29-variant30-variant32-variant36-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:485,39,0:0,0,10,3
chr2	108915136	.	T	C	408.15	PASS	AC=2;AF=0.703;AN=2;DP=1461;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1001,99,0:0,0,20,13
chr2	108915263	.	C	T	306.94	PASS	AC=2;AF=0.716;AN=2;DP=1009;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-filterInvariant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:942,96,0:0,0,12,20
chr2	108925780	.	T	C	1255.78	PASS	AC=2;AF=0.756;AN=2;DP=1582;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1502,147,0:0,0,23,26
chr2	108946033	.	C	T	1019.66	PASS	AC=1;AF=0.607;AN=2;DP=914;MQ=60;set=variant3-variant10-variant11-variant13-variant16-variant20-variant21-variant25-variant28-variant29-variant32-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:832,0,925:12,23,13,20
chr2	108946069	.	G	A	802.18	PASS	AC=1;AF=0.607;AN=2;DP=724;MQ=60;set=variant3-variant10-variant11-variant13-variant16-variant20-variant21-variant25-variant28-variant29-variant32-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:699,0,659:10,16,12,19
chr2	108946131	.	A	T	558.69	PASS	AC=1;AF=0.607;AN=2;DP=396;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant11-variant13-variant16-variant20-variant21-variant25-variant28-variant29-variant32-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:513,0,356:5,9,5,14
chr2	108946156	.	T	C	264.32	PASS	AC=1;AF=0.683;AN=2;DP=608;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:353,0,319:3,8,1,10
chr2	108946178	.	A	G	273.32	PASS	AC=1;AF=0.683;AN=2;DP=417;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:234,0,175:0,5,0,6
chr2	108968848	.	A	C	1060.35	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=1.861;FractionInformativeReads=1;MQ=60;MQRankSum=0.159;QD=12.78;ReadPosRankSum=0.779;SOR=0.469;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,42:83:99:1089,0,1525:14,27,17,25
chr2	108968850	.	C	T	1319.72	PASS	AC=1;AF=0.538;AN=2;DP=1355;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant9-variant10-variant13-variant14-variant22-variant25-variant32-variant33-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:42,39:81:99:900,0,1648:17,25,13,26
chr2	108994808	.	C	G	1148.97	PASS	AC=1;AF=0.583;AN=2;DP=1889;MQ=60;set=variant-variant3-variant4-variant7-variant10-variant11-variant13-variant14-variant19-variant22-variant24-variant25-variant27-variant32-variant33-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:45,47:92:99:1133,0,1188:25,20,25,22
chr2	108999786	.	T	C	769.88	PASS	AC=2;AF=0.611;AN=2;DP=1209;MQ=60;set=variant-variant3-variant4-variant7-variant10-variant11-variant13-variant14-variant19-variant22-variant24-variant25-variant27-variant32-variant33-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1956,183,0:0,0,37,24
chr2	109003761	.	A	G	1370.3	PASS	AC=1;AF=0.542;AN=2;DP=1300;MQ=60;set=variant-variant3-variant10-variant13-variant14-variant22-variant25-variant32-variant33-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,63:103:99:1541,0,861:18,22,33,30
chr2	109004251	.	ATT	AT,A,ATTT	119.25	PASS	AC=0,1,0;AF=0.31,0.095,0.119;AN=2;DP=558;MQ=60;set=variant-variant2-filterInvariant3-variant5-variant6-variant11-variant12-filterInvariant14-variant16-filterInvariant19-variant28-variant30-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:11:99:1,6,2,2
chr2	109065123	.	C	T	1774.33	PASS	AC=1;AF=0.674;AN=2;DP=3968;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,87:162:99:2154,0,1750:34,41,37,50
chr2	109065481	.	C	CA	1690.71	PASS	AC=1;AF=0.674;AN=2;DP=2646;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,55:114:99:1738,0,1846:31,28,28,27
chr2	109065858	.	T	C	1330.13	PASS	AC=1;AF=0.717;AN=2;DP=2535;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,42:69:99:1199,0,750:11,16,19,23
chr2	109065919	.	T	C	1054.47	PASS	AC=1;AF=0.674;AN=2;DP=1445;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,34:53:99:997,0,511:10,9,16,18
chr2	109067359	.	G	A	293.44	PASS	AC=1;AF=0.674;AN=2;DP=702;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,6:25:99:192,0,1350:16,3,5,1
chr2	109067360	.	T	A	293.44	PASS	AC=1;AF=0.674;AN=2;DP=716;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,6:26:99:192,0,1350:17,3,5,1
chr2	109069008	.	T	C	535.67	PASS	AC=1;AF=0.717;AN=2;DP=1271;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,15:37:99:358,0,621:10,12,5,10
chr2	109085373	.	A	G	1707.71	PASS	AC=1;AF=0.674;AN=2;DP=2895;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,64:109:99:1765,0,1139:24,21,35,29
chr2	109089404	.	C	G	560.22	PASS	AC=1;AF=0.717;AN=2;DP=1066;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,18:29:99:477,0,281:3,8,5,13
chr2	109092121	.	G	A	765.17	PASS	AC=1;AF=0.682;AN=2;DP=966;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,23:36:99:602,0,263:7,6,10,13
chr2	109098994	.	T	C	205.39	PASS	AC=1;AF=0.674;AN=2;DP=376;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:275,0,147:1,5,1,7
chr2	109099477	.	A	G	671.97	PASS	AC=1;AF=0.717;AN=2;DP=1685;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,35:60:99:863,0,533:13,12,18,17
chr2	109099572	.	C	G	1810.75	PASS	AC=2;AF=0.989;AN=2;DP=2010;MQ=60;MQRankSum=-1.092;ReadPosRankSum=-0.705;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1225,120,0:0,0,15,25
chr2	109103108	.	C	T	883.77	PASS	AC=1;AF=0.674;AN=2;DP=1876;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,37:80:99:1021,0,1160:15,28,9,28
chr2	109106381	.	A	G	1139.85	PASS	AC=1;AF=0.674;AN=2;DP=1870;FractionInformativeReads=1;MQ=60;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,38:98:99:799,0,1500:38,22,21,17
chr2	109116613	.	CAT	C	551.74	PASS	AC=1;AF=0.722;AN=2;DP=779;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,7:32:99:203,0,966:13,12,3,4
chr2	109123950	.	T	A	167.47	PASS	AC=1;AF=0.684;AN=2;DP=191;FractionInformativeReads=1;set=variant2-variant6-variant8-variant11-variant15-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:112,0,181:5,0,3,1
chr2	109123988	.	C	CT,CTT	180.8	PASS	AC=1,0;AF=0.548,0.119;AN=2;DP=544;set=variant2-variant6-variant8-variant11-variant12-variant15-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:DP:GQ:SB	0/1:20:99:8,4,6,2
chr2	109124242	.	T	A	287.36	PASS	AC=1;AF=0.538;AN=2;DP=200;FractionInformativeReads=1;set=variant-variant3-variant10-variant13-variant14-variant22-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:183,0,236:1,7,0,5
chr2	109204726	.	GA	G	32.38	PASS	AC=2;AF=0.917;AN=2;DP=95;FS=0;MQ=60;set=variant2-variant3-variant4-variant7-variant11-variant14-variant20-variant21-variant22-variant23-variant24-variant25-variant32-variant33-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:226,24,0:0,0,5,3
chr2	109205126	.	T	G	87.2	PASS	AC=1;AF=0.538;AN=2;DP=147;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant10-variant13-variant14-variant22-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:184,0,262:1,7,1,5
chr2	109277239	.	C	T	865.51	PASS	AC=1;AF=0.674;AN=2;DP=1530;set=variant2-variant6-variant8-variant11-variant12-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant27-variant28-variant29-variant30-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,35:59:99:802,0,580:7,17,16,19
chr2	109278635	.	T	G	172.33	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=53.94;MQRankSum=-3.732;QD=4.92;ReadPosRankSum=-1.876;SOR=0.922;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,7:35:99:201,0,1016:25,3,7,0
chr2	109278823	.	T	C	1151.83	PASS	AC=1;AF=0.5;AN=2;DP=12425;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:346,90:436:99:974,0,9061:147,199,40,50
chr2	109292280	.	T	C	4280.65	PASS	AC=2;AF=0.943;AN=2;DP=8245;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:5298,497,0:0,0,103,63
chr2	109292979	.	T	C	160.38	PASS	AC=1;AF=0.792;AN=2;DP=116;FractionInformativeReads=1;set=filterInvariant2-variant8-variant11-variant17-variant20-variant21-filterInvariant23-filterInvariant29-variant30-filterInvariant37-variant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:78:78,0,85:3,0,2,2
chr2	109294588	.	A	T	1412.03	PASS	AC=1;AF=0.679;AN=2;DP=3083;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,44:99:99:1021,0,1440:22,33,14,30
chr2	109296984	.	C	A	157.99	PASS	AC=2;AF=0.821;AN=2;DP=73;set=variant7-variant11-variant15-variant19-variant20-variant21-variant23-variant24-variant27-variant28-variant33-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr2	109301074	.	C	A	5166.51	PASS	AC=1;AF=0.726;AN=2;DP=4552;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,80:146:99:1979,0,1284:35,31,39,41
chr2	109301115	.	T	TA	2873.56	PASS	AC=1;AF=0.679;AN=2;DP=4217;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,70:156:99:2355,0,2970:47,39,35,35
chr2	109301398	.	C	A	18992	PASS	AC=2;AF=1;AN=2;DP=22080;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,403:403:99:12772,1205,0:0,0,214,189
chr2	109301687	.	G	C	8073.57	PASS	AC=1;AF=0.726;AN=2;DP=6488;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:102,66:168:99:1602,0,2788:54,48,34,32
chr2	109301841	.	G	A	4825.37	PASS	AC=1;AF=0.679;AN=2;DP=8952;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:169,159:328:99:3816,0,3987:89,80,77,82
chr2	109302388	.	G	A	6863.97	PASS	AC=1;AF=0.726;AN=2;DP=5083;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,69:151:99:1729,0,2183:26,56,23,46
chr2	109345484	.	G	A	251.82	PASS	AC=1;AF=0.604;AN=2;DP=640;FractionInformativeReads=1;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:269,0,252:7,2,6,6
chr2	109345689	.	A	T	134.38	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=0;FractionInformativeReads=1;MQ=54.3;MQRankSum=1.26;QD=3.84;ReadPosRankSum=-1.515;SOR=0.518;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,10:35:99:163,0,684:9,16,4,6
chr2	109347947	.	T	G	786.91	PASS	AC=2;AF=0.625;AN=2;DP=1251;FractionInformativeReads=1;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1796,159,0:0,0,15,38
chr2	109351914	.	C	G	628.14	PASS	AC=1;AF=0.604;AN=2;DP=1115;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:652,0,604:17,6,20,3
chr2	109352503	.	A	G	377.77	PASS	AC=2;AF=0.63;AN=2;DP=520;FractionInformativeReads=1;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:944,75,0:0,0,22,3
chr2	109352542	.	G	A	401.28	PASS	AC=2;AF=0.625;AN=2;DP=1005;FractionInformativeReads=1;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1240,108,0:0,0,29,7
chr2	109357252	.	T	TTAAAA	281.3	PASS	AC=2;AF=0.63;AN=2;DP=435;set=variant2-variant7-variant8-filterInvariant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:609,42,0:0,0,0,14
chr2	109365521	.	C	T	1511.29	PASS	AC=1;AF=0.5;AN=2;DP=170;FS=2.029;FractionInformativeReads=1;MQ=55.56;MQRankSum=1.056;QD=8.89;ReadPosRankSum=-1.461;SOR=0.893;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:103,67:170:99:1540,0,2687:40,63,23,44
chr2	109368311	.	T	C	1228.05	PASS	AC=1;AF=0.5;AN=2;DP=88;FS=1.765;FractionInformativeReads=1;MQ=57.52;MQRankSum=-0.739;QD=13.96;ReadPosRankSum=-0.939;SOR=0.996;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,44:88:99:1256,0,1089:24,20,27,17
chr2	109369720	.	G	T	155.96	PASS	AC=1;AF=0.604;AN=2;DP=607;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:305,0,517:8,7,5,5
chr2	109370068	.	A	T	385.89	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=1.752;FractionInformativeReads=1;MQ=48.3;MQRankSum=1.344;QD=14.84;ReadPosRankSum=0.132;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:414,0,246:2,8,5,11
chr2	109370398	.	A	G	1197.6	PASS	AC=1;AF=0.5;AN=2;DP=111;FS=4.692;FractionInformativeReads=0.991;MQ=45.93;MQRankSum=-4.84;QD=10.79;ReadPosRankSum=-3.547;SOR=1.144;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,53:110:99:1226,0,1311:27,30,20,33
chr2	109374952	.	A	G	1016.41	PASS	AC=2;AF=0.625;AN=2;DP=2142;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2073,219,0:0,0,33,40
chr2	109376467	.	C	T	423.22	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=43;FS=0;FractionInformativeReads=1;MQ=25.42;MQRankSum=0.79;QD=9.84;ReadPosRankSum=1.519;SOR=0.627;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:451,0,492:8,14,8,13
chr2	109381438	.	A	G	3277.04	PASS	AC=1;AF=0.556;AN=2;DP=899;FractionInformativeReads=1;set=variant10-variant13-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,46:111:99:1234,0,1569:30,35,16,30
chr2	109388846	.	G	A	343.58	PASS	AC=1;AF=0.604;AN=2;DP=743;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:20,11:31:99:237,0,446:10,10,6,5
chr2	109389124	.	A	T	48	PASS	AC=1;AF=0.609;AN=2;DP=348;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,2:6:72:72,0,125:0,4,0,2
chr2	109389463	.	G	A	3157.69	PASS	AC=2;AF=1;AN=2;DP=5158;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:3986,396,0:0,0,58,74
chr2	109393522	.	TG	T	961.97	PASS	AC=2;AF=1;AN=2;DP=1458;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1343,117,0:0,0,28,11
chr2	109393766	.	A	T	509.3	PASS	AC=1;AF=0.604;AN=2;DP=982;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,17:34:99:634,0,750:5,12,4,13
chr2	109393767	.	TATAAC	T	500.26	PASS	AC=1;AF=0.604;AN=2;DP=866;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:633,0,750:4,11,3,12
chr2	109393774	.	A	T	439.37	PASS	AC=1;AF=0.604;AN=2;DP=778;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:591,0,638:3,10,3,12
chr2	109393779	.	A	T	448.4	PASS	AC=1;AF=0.604;AN=2;DP=701;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:549,0,641:3,10,2,11
chr2	109393780	.	G	T	448.4	PASS	AC=1;AF=0.604;AN=2;DP=693;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:507,0,644:3,10,2,11
chr2	109393781	.	A	T	451.41	PASS	AC=1;AF=0.604;AN=2;DP=687;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:549,0,641:3,10,2,11
chr2	109393786	.	TC	T	400.38	PASS	AC=1;AF=0.604;AN=2;DP=615;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:516,0,518:1,8,2,11
chr2	109393789	.	TCCCTTACCCCCC	T	400.38	PASS	AC=1;AF=0.604;AN=2;DP=592;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:480,0,437:1,7,1,11
chr2	109393803	.	GT	G	430.49	PASS	AC=1;AF=0.604;AN=2;DP=510;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:480,0,437:1,7,1,11
chr2	109393807	.	G	GTTTAGT	439.52	PASS	AC=1;AF=0.604;AN=2;DP=472;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:483,0,395:0,7,1,11
chr2	109400948	.	T	C	4453.42	PASS	AC=1;AF=0.5;AN=2;DP=322;FS=1.32;FractionInformativeReads=1;MQ=60;MQRankSum=3.493;QD=13.83;ReadPosRankSum=1.795;SOR=0.768;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:155,167:322:99:4482,0,3811:77,78,87,80
chr2	109401184	.	A	G	3041.32	PASS	AC=1;AF=0.5;AN=2;DP=254;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.792;QD=11.97;ReadPosRankSum=-0.012;SOR=0.696;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:139,115:254:99:3070,0,3996:70,69,58,57
chr2	109401259	.	C	T	4323.12	PASS	AC=2;AF=0.625;AN=2;DP=8960;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,344:344:99:10415,1028,0:0,0,182,162
chr2	109401291	.	T	TTCTAG	7307.43	PASS	AC=2;AF=0.625;AN=2;DP=9143;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,355:355:99:16242,1095,0:0,0,194,161
chr2	109403101	.	G	C	320.6	PASS	AC=1;AF=0.604;AN=2;DP=1899;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,38:94:99:984,0,1510:37,19,27,11
chr2	109404474	.	C	CT	137.61	PASS	AC=1;AF=0.614;AN=2;DP=681;MQ=60;set=variant2-variant7-variant9-variant10-variant12-variant13-variant16-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,20:31:99:437,0,213:7,4,11,9
chr2	109408159	.	G	T	1897.38	PASS	AC=1;AF=0.556;AN=2;DP=583;MQ=60;set=variant10-variant13-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,34:64:99:817,0,742:13,17,18,16
chr2	109408208	.	G	A	513.65	PASS	AC=1;AF=0.604;AN=2;DP=1298;FractionInformativeReads=1;set=variant2-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant18-variant19-variant23-variant24-variant25-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,35:61:99:821,0,619:11,15,17,18
chr2	109411248	.	GAATAT	G	450.49	PASS	AC=1;AF=0.756;AN=2;DP=690;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:352,0,384:0,6,0,9
chr2	109421334	.	TCTC	T	1081.74	PASS	AC=1;AF=0.556;AN=2;DP=529;MQ=60;set=variant10-variant13-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,30:59:99:680,0,1215:14,15,15,15
chr2	109429262	.	A	G	1123.59	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=0.707;FractionInformativeReads=1;MQ=60;MQRankSum=-1.335;QD=10.21;ReadPosRankSum=0.835;SOR=0.776;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,48:110:99:1152,0,1572:31,31,25,23
chr2	109490104	.	A	G	535.17	PASS	AC=2;AF=1;AN=2;DP=484;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:402,27,0:0,0,0,9
chr2	109492907	.	A	G	1650.3	PASS	AC=2;AF=0.932;AN=2;DP=6774;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4528,455,0:0,0,62,90
chr2	109511208	.	A	ATAAG	5016	PASS	AC=1;AF=0.55;AN=2;DP=1241;MQ=60;set=variant10-variant13-variant18-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,48:103:99:1849,0,2834:24,31,22,26
chr2	109511467	.	GACTC	G	2154.54	PASS	AC=1;AF=0.556;AN=2;DP=476;MQ=60;set=variant10-variant13-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,30:57:99:1164,0,1432:16,11,17,13
chr2	109511765	.	A	G	3848.09	PASS	AC=1;AF=0.774;AN=2;DP=12710;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:172,171:343:99:4040,0,4473:79,93,79,92
chr2	109512115	.	C	A	2196.44	PASS	AC=1;AF=0.55;AN=2;DP=610;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant16-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:769,0,829:15,15,11,15
chr2	109512234	.	T	C	288.11	PASS	AC=1;AF=0.786;AN=2;DP=2106;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:751,0,422:10,9,13,13
chr2	109512428	.	G	A	686.11	PASS	AC=1;AF=0.556;AN=2;DP=171;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,10:28:99:313,0,519:11,7,7,3
chr2	109512606	.	A	G	1758.51	PASS	AC=1;AF=0.556;AN=2;DP=567;FractionInformativeReads=1;MQ=60;set=variant10-variant13-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,32:71:99:790,0,1103:22,17,15,17
chr2	109513321	.	C	A	866.01	PASS	AC=2;AF=0.864;AN=2;DP=5660;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3416,328,0:0,0,58,52
chr2	109513654	.	G	A	69.16	PASS	AC=1;AF=0.774;AN=2;DP=4278;MQ=60;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,60:116:99:1376,0,1293:21,35,25,35
chr2	109513786	.	A	T	125.53	PASS	AC=1;AF=0.8;AN=2;DP=354;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:52:188,0,52:0,2,1,5
chr2	109522720	.	G	A	646.44	PASS	AC=1;AF=0.774;AN=2;DP=2184;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:771,0,966:21,15,21,9
chr2	109524105	.	CA	C	286.67	PASS	AC=2;AF=0.833;AN=2;DP=912;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:380,42,0:0,0,11,3
chr2	109526969	.	G	A	1694.17	PASS	AC=2;AF=0.864;AN=2;DP=8474;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,176:176:99:4975,525,0:0,0,94,82
chr2	109527087	.	G	A	1579.31	PASS	AC=1;AF=0.762;AN=2;DP=4645;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,41:94:99:1068,0,1296:22,31,14,27
chr2	109527373	.	A	G	1538.26	PASS	AC=2;AF=0.864;AN=2;DP=6192;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:3744,327,0:0,0,55,54
chr2	109539653	.	A	G	624.2	PASS	AC=2;AF=0.864;AN=2;DP=2304;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2526,201,0:0,0,42,25
chr2	109539654	.	T	C	493.37	PASS	AC=1;AF=0.542;AN=2;DP=591;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant13-variant14-variant18-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:963,0,781:19,14,23,11
chr2	109539774	.	G	A	1304.4	PASS	AC=1;AF=0.542;AN=2;DP=1404;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant13-variant14-variant18-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,70:134:99:1887,0,1648:37,27,38,32
chr2	109539913	.	C	T	1182.31	PASS	AC=1;AF=0.55;AN=2;DP=845;MQ=60;set=variant3-variant10-variant13-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,54:101:99:1320,0,1422:19,28,19,35
chr2	109540036	.	C	G	492.26	PASS	AC=1;AF=0.542;AN=2;DP=583;FractionInformativeReads=1;MQ=60;set=variant3-variant10-variant13-variant14-variant18-variant25-variant32-variant33-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,12:37:99:300,0,739:8,17,7,5
chr2	109546833	.	G	A	557.98	PASS	AC=1;AF=0.5;AN=2;DP=99;MQ=60;set=variant3-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,26:48:99:768,0,714:2,20,4,22
chr2	109605767	.	G	A	938.64	PASS	AC=1;AF=0.536;AN=2;DP=822;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant11-variant24-variant27-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:850,0,728:15,13,13,18
chr2	109745176	.	G	A	534.65	PASS	AC=1;AF=0.989;AN=2;DP=959;MQ=60;MQRankSum=0.953;ReadPosRankSum=2.307;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:18,12:30:99:401,0,502:13,5,10,2
chr2	109745782	.	TGGCCGGTCCCCGCCACGCA	T	2907.5	PASS	AC=1;AF=0.989;AN=2;DP=4378;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:1315,0,6152:14,19,14,20
chr2	109929958	.	A	G	913.86	PASS	AC=2;AF=0.672;AN=2;DP=1609;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1728,153,0:0,0,35,16
chr2	109930323	.	G	A	767.73	PASS	AC=1;AF=0.611;AN=2;DP=499;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant12-variant14-variant19-variant20-variant25-variant30-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:421,0,556:3,14,3,10
chr2	109988215	.	C	G	64.98	PASS	AC=1;AF=0.671;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:181,0,342:1,9,1,5
chr2	110014979	.	T	C	1367.26	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=4.898;FractionInformativeReads=1;MQ=60;MQRankSum=-0.526;QD=13.27;ReadPosRankSum=-3.777;SOR=0.632;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,56:103:99:1395,0,1077:27,20,26,30
chr2	110036161	.	A	G	627.23	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=1.654;FractionInformativeReads=1;MQ=60;MQRankSum=-0.681;QD=19.6;ReadPosRankSum=-1.032;SOR=0.425;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:655,0,360:2,10,5,15
chr2	110259610	.	G	A	1053.81	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=1.779;FractionInformativeReads=1;MQ=60;MQRankSum=0.198;QD=12.4;ReadPosRankSum=0.224;SOR=0.923;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,44:85:99:1082,0,918:18,23,17,27
chr2	110260993	.	C	T	2088.05	PASS	AC=2;AF=0.932;AN=2;DP=2609;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:2146,162,0:0,0,12,42
chr2	110261443	.	AG	A	893.1	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.29;QD=13.33;ReadPosRankSum=-0.4;SOR=0.653;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,28:67:99:930,0,1366:15,24,11,17
chr2	110261696	.	C	T	189.32	PASS	AC=1;AF=0.6;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant4-variant6-variant7-variant8-variant11-variant15-variant19-variant20-variant22-variant26-variant27-variant28-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:469,0,335:7,6,6,9
chr2	110343326	.	T	C	185.53	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=5.402;FractionInformativeReads=1;MQ=60;MQRankSum=-0.902;QD=6.63;ReadPosRankSum=-1.963;SOR=2.584;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,7:28:99:214,0,694:15,6,7,0
chr2	110371493	.	A	T	499.26	PASS	AC=1;AF=0.552;AN=2;DP=870;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,15:38:99:395,0,702:15,8,10,5
chr2	110371622	.	C	G	3335.51	PASS	AC=2;AF=1;AN=2;DP=5137;FS=0;MQ=60;MQRankSum=1.338;ReadPosRankSum=-0.157;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2483,243,0:0,0,41,40
chr2	110371692	.	C	A	2094.13	PASS	AC=1;AF=0.5;AN=2;DP=3852;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant12-variant16-variant18-variant20-variant21-variant24-variant25-variant26-variant30-variant31-variant34-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:75,50:125:99:1162,0,1694:43,32,27,23
chr2	110372192	.	A	G	2494.64	PASS	AC=2;AF=1;AN=2;DP=3780;FS=0;MQ=60;MQRankSum=0.197;ReadPosRankSum=-0.945;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2386,234,0:0,0,44,34
chr2	110373197	.	G	A	3710.71	PASS	AC=1;AF=0.5;AN=2;DP=6464;MQ=60;set=variant2-variant3-variant5-variant8-variant9-variant11-variant12-variant16-variant18-variant20-variant21-variant24-variant25-variant26-variant30-variant31-variant34-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:134,131:265:99:3119,0,3417:64,70,54,77
chr2	110373938	.	T	G	1019.29	PASS	AC=1;AF=0.552;AN=2;DP=2417;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:1088,0,1207:20,18,21,15
chr2	110374215	.	T	C	2823.1	PASS	AC=1;AF=0.517;AN=2;DP=6300;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,107:214:99:3099,0,2945:56,51,60,47
chr2	110375025	.	C	T	2180.77	PASS	AC=1;AF=0.517;AN=2;DP=4789;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant11-variant12-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,68:153:99:1714,0,2203:40,45,31,37
chr2	110375592	.	CAAAAA	C,CAAAA,CAAA	384.22	PASS	AC=0,1,0;AF=0.266,0.203,0.063;AN=2;DP=835;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-filterInvariant35-variant36-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/2:14:62:5,1,7,1
chr2	110375885	.	C	A	2935.53	PASS	AC=1;AF=0.5;AN=2;DP=258;FS=0.459;FractionInformativeReads=1;MQ=60;MQRankSum=2.828;QD=11.38;ReadPosRankSum=0.344;SOR=0.745;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:144,114:258:99:2964,0,3703:79,65,64,50
chr2	110552150	.	A	G	1030.34	PASS	AC=2;AF=1;AN=2;DP=41;FS=0;FractionInformativeReads=1;SOR=1.609;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:226,21,0:0,0,5,2
chr2	110552183	.	G	C	104.67	PASS	AC=1;AF=0.889;AN=2;DP=106;FS=0;set=variant-variant2-variant4-variant9-variant10-variant12-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant31-variant32-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,2:10:60:60,0,330:5,3,2,0
chr2	110855123	.	G	T	1199.86	PASS	AC=1;AF=0.966;AN=2;DP=5600;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,62:107:99:1432,0,1037:25,20,36,26
chr2	110880187	.	C	T	2550.5	PASS	AC=2;AF=1;AN=2;DP=3873;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3059,300,0:0,0,59,41
chr2	110919041	.	A	G	330.23	PASS	AC=1;AF=0.708;AN=2;DP=431;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant28-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:64:64,0,258:6,1,2,1
chr2	111058854	.	G	A	515.77	PASS	AC=2;AF=0.984;AN=2;DP=820;FS=0;MQRankSum=4.4;ReadPosRankSum=1.156;set=filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant25-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant34-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:396,48,0:0,0,8,8
chr2	111399515	.	G	T	475.08	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.526;QD=23.75;ReadPosRankSum=0.289;SOR=0.324;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:503,0,211:0,6,2,12
chr2	111419426	.	A	G	1637.42	PASS	AC=1;AF=0.5;AN=2;DP=424;MQ=60;set=variant21-variant27-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,56:112:99:1383,0,1539:20,36,27,29
chr2	111423830	.	C	T	1983.56	PASS	AC=1;AF=0.5;AN=2;DP=182;FS=2.573;FractionInformativeReads=0.995;MQ=60;MQRankSum=1.792;QD=10.9;ReadPosRankSum=0.109;SOR=0.824;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,89:181:99:2012,0,2272:47,45,41,48
chr2	111526090	.	TGA	T,TGTGTGTGTGAGAGAGAGA	168.16	PASS	AC=1,0;AF=0.333,0.167;AN=2;DP=80;MQ=60;set=variant17-variant36-variant41	GT:DP:GQ:SB	0/1:20:99:2,11,0,7
chr2	111551763	.	A	G	1166.37	PASS	AC=1;AF=0.5;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant17-variant27-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,45:74:99:1241,0,743:11,18,17,28
chr2	111562706	.	C	T	752.82	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.106;QD=24.28;ReadPosRankSum=-0.486;SOR=0.643;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,21:31:99:781,0,309:9,1,18,3
chr2	111666339	.	A	G	882.82	PASS	AC=1;AF=0.5;AN=2;DP=190;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:54,59:113:99:1574,0,1369:34,20,33,26
chr2	111721142	.	ATGTGTGTGTGTGTGTGTGTG	ATGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTG,A,ATGTGTGTGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTGTGTGTG,ATGTGTGTGTGTG	1279.5	PASS	AC=0,0,1,0,0,0;AF=0.281,0.109,0.188,0.016,0.016,0.016;AN=2;DP=2653;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant18-filterInvariant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/3:79:99:24,15,30,10
chr2	111721169	.	TGTGTGTGTG	T,TTGTGTGTG	1178.72	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=170;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:DP:GQ:SB	0/2:93:99:32,18,27,16
chr2	111721171	.	TGTGTGTGTG	TTGTGTGTG,T	1916.42	PASS	AC=0,1;AF=0.464,0.036;AN=2;DP=1371;MQ=60;set=variant-variant2-variant5-variant9-variant11-variant14-variant24-variant27-variant34-variant35-variant36-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:100:99:34,22,27,17
chr2	111753449	.	G	C	1433.35	PASS	AC=1;AF=0.591;AN=2;DP=4156;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,67:128:99:1671,0,1418:35,26,38,29
chr2	111753542	.	GGTTCTTCAGCGGGGTTTGGTGGCCAGAATTTATTATAAGGTAAAGATACACTGT	G	1156.1	PASS	AC=1;AF=0.5;AN=2;DP=265;MQ=59.82;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:83,46:129:99:1543,0,32336:33,50,15,31
chr2	111851212	.	C	T	121.23	PASS	AC=2;AF=0.531;AN=2;DP=311;FractionInformativeReads=1;set=variant-variant4-variant5-variant10-variant12-variant14-variant15-variant20-variant23-variant24-variant30-variant32-variant34-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:667,51,0:0,0,3,14
chr2	111851499	.	A	G	8467.19	PASS	AC=2;AF=0.586;AN=2;DP=7215;MQ=60;set=variant-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant30-variant32-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,236:238:99:7493,664,0:1,1,144,92
chr2	111859669	.	A	G	1356.02	PASS	AC=1;AF=0.5;AN=2;DP=115;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.898;QD=11.79;ReadPosRankSum=-0.937;SOR=0.73;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,57:115:99:1384,0,1660:27,31,26,31
chr2	111878556	.	TGCCGCCGCCGCC	TGCCGCCGCC,TGCCGCCGCCGCCGCCGCCGCCGCCGCC,T,TGCCGCCGCCGCCGCC,TGCC	1561.47	PASS	AC=1,0,0,0,0;AF=0.762,0.012,0.071,0.036,0.012;AN=2;DP=7143;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:118:99:32,23,31,32
chr2	111878565	.	C	T	1298.09	PASS	AC=1;AF=0.808;AN=2;DP=6642;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,59:114:99:2145,0,2779:32,23,31,28
chr2	111881810	.	C	T	518.18	PASS	AC=1;AF=0.55;AN=2;DP=753;MQ=60;set=variant13-variant14-variant18-variant24-variant29-variant34-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,25:71:99:554,0,1158:24,22,13,12
chr2	111886180	.	CTT	CT,CTTT,CTTTT,C	229.91	PASS	AC=1,0,0,0;AF=0.388,0.138,0.013,0.013;AN=2;DP=2417;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-filterInvariant7-variant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-filterInvariant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:65:99:21,6,32,6
chr2	111887703	.	T	A	522.91	PASS	AC=1;AF=0.793;AN=2;DP=463;set=variant5-variant6-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:153,0,382:5,8,2,5
chr2	111900057	.	A	C	166.67	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.851;QD=16.67;ReadPosRankSum=0.676;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:195,0,195:0,5,0,5
chr2	111907691	.	T	C	1060.81	PASS	AC=2;AF=0.8;AN=2;DP=2310;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2166,213,0:0,0,43,28
chr2	111907788	.	A	G	976.56	PASS	AC=1;AF=0.5;AN=2;DP=92;FS=1.697;FractionInformativeReads=1;MQ=60;MQRankSum=0.047;QD=10.61;ReadPosRankSum=1.968;SOR=0.561;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,45:92:99:1005,0,1139:21,26,23,22
chr2	111909713	.	T	G	256.01	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=1.908;FractionInformativeReads=1;MQ=60;MQRankSum=0.737;QD=7.53;ReadPosRankSum=-0.094;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,10:34:99:284,0,763:5,19,1,9
chr2	111918994	.	A	G	1741.14	PASS	AC=1;AF=0.5;AN=2;DP=156;FS=0.59;FractionInformativeReads=1;MQ=60;MQRankSum=-0.432;QD=11.16;ReadPosRankSum=-0.432;SOR=0.752;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:79,77:156:99:1769,0,1860:44,35,44,33
chr2	111921835	.	A	G	970.3	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.825;QD=12.44;ReadPosRankSum=0.105;SOR=0.613;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:999,0,1142:24,16,22,16
chr2	111921940	.	T	G	1529.52	PASS	AC=1;AF=0.5;AN=2;DP=139;FS=3.837;FractionInformativeReads=1;MQ=60;MQRankSum=0.649;QD=11;ReadPosRankSum=-1.034;SOR=1.149;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:88,51:139:99:1558,0,2835:64,24,41,10
chr2	111922033	.	G	A	3261.03	PASS	AC=1;AF=0.5;AN=2;DP=373;FS=3.452;FractionInformativeReads=1;MQ=60;MQRankSum=1.816;QD=8.74;ReadPosRankSum=-3.368;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:235,138:373:99:3289,0,6198:122,113,78,60
chr2	111922187	.	G	A	2272.78	PASS	AC=1;AF=0.5;AN=2;DP=243;FS=2.345;FractionInformativeReads=1;MQ=60;MQRankSum=0.693;QD=9.35;ReadPosRankSum=0.487;SOR=0.868;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:148,95:243:99:2301,0,3780:54,94,31,64
chr2	111922319	.	C	G	690.22	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=1.11;FractionInformativeReads=1;MQ=60;MQRankSum=0.542;QD=13.53;ReadPosRankSum=3.281;SOR=1.028;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,29:51:99:718,0,594:10,12,11,18
chr2	111923086	.	G	GT	563.66	PASS	AC=1;AF=0.6;AN=2;DP=309;MQ=60;set=variant16-variant36-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,28:72:99:596,0,1106:24,20,14,14
chr2	111923543	.	A	T	515.27	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=2.693;FractionInformativeReads=1;MQ=60;MQRankSum=-1.682;QD=11.2;ReadPosRankSum=-2.87;SOR=0.327;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:544,0,739:17,7,13,9
chr2	111923630	.	T	G	2599.99	PASS	AC=1;AF=0.781;AN=2;DP=3485;MQ=60;set=variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,45:94:99:1019,0,1156:27,22,23,22
chr2	111924141	.	A	T	1258.56	PASS	AC=1;AF=0.5;AN=2;DP=127;FS=0.673;FractionInformativeReads=0.953;MQ=60;MQRankSum=-0.76;QD=9.91;ReadPosRankSum=-0.029;SOR=0.727;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,62:121:99:1287,0,1366:30,29,30,32
chr2	111924829	.	C	G	537.67	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=2.441;FractionInformativeReads=1;MQ=60;MQRankSum=0.197;QD=10.75;ReadPosRankSum=-0.55;SOR=0.413;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,21:50:99:566,0,919:19,10,12,9
chr2	111925427	.	A	T	980.55	PASS	AC=1;AF=0.5;AN=2;DP=75;FS=0.87;FractionInformativeReads=1;MQ=60;MQRankSum=-1.246;QD=13.07;ReadPosRankSum=-1.585;SOR=0.648;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,39:75:99:1009,0,1016:19,17,19,20
chr2	112526866	.	G	A	610.17	DRAGENHardSNP	AC=1;AF=0.526;AN=2;DP=1660;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:41,38:79:99:746,0,856:16,25,16,22
chr2	112536264	.	G	T	140.39	PASS	AC=2;AF=1;AN=2;DP=473;FS=0;MQRankSum=-1.156;ReadPosRankSum=-0.771;set=variant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-variant10-filterInvariant11-variant12-variant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-filterInvariant20-filterInvariant21-variant22-variant23-variant24-filterInvariant25-filterInvariant26-variant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-variant38-variant39-filterInvariant40-filterInvariant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:366,33,0:0,0,11,0
chr2	112552427	.	C	T	178.97	PASS	AC=1;AF=0.55;AN=2;DP=73;FractionInformativeReads=1;set=variant3-variant13-filterInvariant14-variant16-filterInvariant19-variant33-variant35-variant39-filterInvariant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,6:7:12:177,0,12:0,1,2,4
chr2	112559827	.	T	C	147.21	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=34.3;MQRankSum=-1.61;QD=8.66;ReadPosRankSum=-0.537;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:175,0,285:8,2,5,2
chr2	112566517	.	C	T	208.22	DRAGENHardSNP	AC=1;AF=0.567;AN=2;DP=171;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:64:64,0,64:2,1,2,1
chr2	112578794	.	T	C	30.28	PASS	AC=1;AF=0.583;AN=2;DP=97;FractionInformativeReads=1;set=filterInvariant3-variant9-filterInvariant16-filterInvariant19-filterInvariant25-filterInvariant27-filterInvariant28-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:74:74,0,90:3,1,3,0
chr2	112582620	.	G	A	636.96	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=0;FractionInformativeReads=1;MQ=59.06;MQRankSum=1.225;QD=10.8;ReadPosRankSum=0.114;SOR=0.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:665,0,844:15,17,13,14
chr2	112582766	.	CTT	C	424.5	PASS	AC=1;AF=0.553;AN=2;DP=464;set=variant-variant3-variant8-variant9-variant13-variant14-variant16-variant19-variant25-variant27-variant28-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:375,0,678:6,9,3,7
chr2	112583224	.	C	T	378.49	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=57.5;MQRankSum=-0.754;QD=22.26;ReadPosRankSum=-1.457;SOR=0.804;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:407,0,362:5,1,9,2
chr2	112583476	.	C	T	323.26	PASS	AC=1;AF=0.526;AN=2;DP=685;FractionInformativeReads=1;set=variant-variant3-variant8-variant9-variant13-variant14-variant16-variant19-variant25-variant27-variant28-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,9:32:99:225,0,670:8,15,2,7
chr2	112588751	.	C	T	303.14	PASS	AC=1;AF=0.75;AN=2;DP=669;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:280,0,184:5,1,7,3
chr2	112589080	.	G	A	139.26	PASS	AC=1;AF=0.567;AN=2;DP=111;FractionInformativeReads=1;set=variant-variant3-variant8-filterInvariant14-filterInvariant16-variant19-variant27-filterInvariant28-variant32-filterInvariant33-filterInvariant35-variant37-variant39-filterInvariant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:47:74,0,47:0,2,0,3
chr2	112590989	.	A	T	311.09	PASS	AC=1;AF=0.763;AN=2;DP=1183;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:409,0,450:4,10,6,11
chr2	112592010	.	C	A	52.74	PASS	AC=2;AF=0.893;AN=2;DP=51;FractionInformativeReads=1;set=variant2-variant7-variant9-variant11-variant18-variant25-variant27-variant31-variant32-variant33-variant34-variant36-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:63,6,0:0,0,2,0
chr2	112605465	.	T	C	797.01	PASS	AC=2;AF=1;AN=2;DP=1426;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1053,122,0:0,0,19,22
chr2	112614585	.	T	A	88.71	PASS	AC=2;AF=0.891;AN=2;DP=101;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant7-variant9-variant11-variant14-variant19-variant22-variant23-variant27-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:159,12,0:0,0,1,3
chr2	112614589	.	A	C	91.72	PASS	AC=2;AF=0.891;AN=2;DP=89;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant7-variant9-variant11-variant14-variant19-variant22-variant23-variant27-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:135,9,0:0,0,0,3
chr2	112614598	.	T	C	49.73	PASS	AC=2;AF=0.868;AN=2;DP=67;FS=0;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant7-variant9-variant11-variant14-variant19-variant22-variant23-variant27-variant31-variant34-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,0,2
chr2	112621498	.	GA	G	349.93	PASS	AC=1;AF=0.66;AN=2;DP=483;set=variant3-variant7-variant9-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,19:27:99:424,0,130:0,8,4,15
chr2	112622643	.	A	G	293.15	PASS	AC=1;AF=0.77;AN=2;DP=553;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,11:16:99:325,0,185:1,4,3,8
chr2	112622650	.	T	C	166.67	PASS	AC=1;AF=0.77;AN=2;DP=456;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,14:16:1:567,0,1:1,1,2,12
chr2	112625575	.	T	C	159.5	PASS	AC=2;AF=0.8;AN=2;DP=348;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:212,24,0:0,0,5,3
chr2	112630412	.	A	C	241.5	PASS	AC=1;AF=0.743;AN=2;DP=358;FractionInformativeReads=1;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-filterInvariant16-variant18-variant19-variant22-filterInvariant23-variant27-variant28-variant30-variant31-filterInvariant32-variant33-variant34-filterInvariant35-variant36-variant37-filterInvariant38-variant39-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:345,0,143:2,5,1,11
chr2	112631033	.	G	A	241.61	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=15.911;FractionInformativeReads=1;MQ=41.14;MQRankSum=-2.951;QD=16.11;ReadPosRankSum=-0.289;SOR=0.454;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:270,0,509:0,8,4,3
chr2	112631034	.	A	G	241.61	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=15.911;FractionInformativeReads=1;MQ=41.14;MQRankSum=-2.835;QD=16.11;ReadPosRankSum=1.331;SOR=0.454;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:270,0,509:0,8,4,3
chr2	112641149	.	G	C	622.5	PASS	AC=1;AF=0.55;AN=2;DP=1608;MQ=60;set=variant-variant3-variant8-variant9-variant13-variant14-variant16-variant19-variant21-variant25-variant27-variant28-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:41,39:80:99:909,0,1000:23,18,21,18
chr2	112641256	.	G	A	831.08	PASS	AC=2;AF=1;AN=2;DP=1569;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1749,117,0:0,0,11,28
chr2	112641257	.	A	G	422.73	PASS	AC=2;AF=0.769;AN=2;DP=1376;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1749,117,0:0,0,11,28
chr2	112641266	.	G	C	350.34	PASS	AC=1;AF=0.525;AN=2;DP=612;MQ=60;set=variant-variant3-variant8-variant9-variant13-variant14-variant16-variant19-variant21-variant25-variant27-variant28-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:742,0,532:3,12,6,13
chr2	112641283	.	A	G	362.35	PASS	AC=1;AF=0.756;AN=2;DP=942;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,20:32:99:752,0,444:1,11,7,13
chr2	112641666	.	T	C	295.98	PASS	AC=2;AF=0.667;AN=2;DP=1841;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant21-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1452,146,0:0,0,23,26
chr2	112641854	.	C	T	1095.53	PASS	AC=1;AF=0.643;AN=2;DP=4484;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,49:115:99:1204,0,1677:36,30,27,22
chr2	112641909	.	C	T	1108.61	PASS	AC=1;AF=0.737;AN=2;DP=5205;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,57:123:99:1287,0,1654:36,30,29,28
chr2	112686988	.	G	A	2265.61	PASS	AC=1;AF=0.646;AN=2;DP=3096;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,53:102:99:1183,0,1312:24,25,23,30
chr2	112702647	.	C	T	4017.85	PASS	AC=1;AF=0.646;AN=2;DP=6999;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:156,128:284:99:3213,0,4082:75,81,52,76
chr2	112704862	.	A	G,C	180.71	PASS	AC=2,0;AF=0.605,0.132;AN=2;DP=907;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:24:69:0,0,6,18
chr2	112705157	.	T	C	360.92	PASS	AC=2;AF=0.769;AN=2;DP=1460;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1602,140,0:0,0,10,37
chr2	112705185	.	G	T	225.34	PASS	AC=2;AF=0.743;AN=2;DP=830;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:83:919,83,0:0,0,7,21
chr2	112725684	.	A	ATGTGTG	1432.82	PASS	AC=2;AF=0.769;AN=2;DP=4161;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,109:109:99:4755,344,0:0,0,65,44
chr2	112740373	.	G	A	309.33	PASS	AC=2;AF=0.769;AN=2;DP=1046;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:734,69,0:0,0,16,7
chr2	112740596	.	GA	G	2496.4	PASS	AC=1;AF=0.618;AN=2;DP=2454;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,71:137:99:2804,0,3840:34,32,35,36
chr2	112740598	.	T	G	2505.45	PASS	AC=1;AF=0.618;AN=2;DP=2446;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,72:137:99:2804,0,3840:33,32,35,37
chr2	112751928	.	G	A	1279.96	PASS	AC=2;AF=0.769;AN=2;DP=5457;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3336,336,0:0,0,69,44
chr2	112752142	.	A	C	246.31	PASS	AC=2;AF=0.769;AN=2;DP=1773;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1491,129,0:0,0,12,31
chr2	112752880	.	G	A	1422.91	PASS	AC=2;AF=0.769;AN=2;DP=3735;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2856,264,0:0,0,49,39
chr2	112753020	.	A	G	2521.04	PASS	AC=1;AF=0.618;AN=2;DP=2734;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:66,83:149:99:1941,0,1497:33,33,36,47
chr2	112753097	.	A	C	1716.33	PASS	AC=2;AF=0.769;AN=2;DP=4898;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2800,272,0:0,0,38,53
chr2	112753781	.	TA	T	1610.55	PASS	AC=2;AF=0.769;AN=2;DP=3665;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3818,322,0:0,0,50,57
chr2	112753883	.	C	T	998.7	PASS	AC=2;AF=0.769;AN=2;DP=2167;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2023,176,0:0,0,29,30
chr2	112753950	.	G	A	862.92	PASS	AC=1;AF=0.646;AN=2;DP=1484;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,36:79:99:1067,0,1148:26,17,20,16
chr2	112754720	.	A	C	442.73	PASS	AC=1;AF=0.652;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:337,0,398:10,1,8,1
chr2	112754828	.	G	T	1567.78	PASS	AC=1;AF=0.618;AN=2;DP=1638;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,47:87:99:1264,0,1019:26,14,31,16
chr2	112754880	.	G	A	1792.02	PASS	AC=1;AF=0.646;AN=2;DP=3476;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,64:131:99:1482,0,1720:37,30,34,30
chr2	112754943	.	C	T	2301.58	PASS	AC=1;AF=0.646;AN=2;DP=3895;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,76:147:99:1678,0,1767:35,36,36,40
chr2	112755001	.	A	G	1207.29	PASS	AC=2;AF=0.769;AN=2;DP=4790;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3308,311,0:0,0,36,68
chr2	112758559	.	T	A	461.51	PASS	AC=1;AF=0.588;AN=2;DP=334;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,8:14:99:300,0,163:5,1,8,0
chr2	112760616	.	T	C	425.49	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=1.775;FractionInformativeReads=1;MQ=60;MQRankSum=0.686;QD=14.67;ReadPosRankSum=0.731;SOR=0.299;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,17:29:99:454,0,342:10,2,12,5
chr2	112761653	.	C	G	582.43	PASS	AC=2;AF=0.769;AN=2;DP=1425;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1079,96,0:0,0,8,24
chr2	112765973	.	A	G	1065.66	PASS	AC=2;AF=0.769;AN=2;DP=3859;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3259,300,0:0,0,54,46
chr2	112766262	.	A	G	659.15	PASS	AC=2;AF=0.769;AN=2;DP=2009;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1281,105,0:0,0,14,21
chr2	112766304	.	G	C	634.52	PASS	AC=1;AF=0.618;AN=2;DP=945;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,13:47:99:351,0,881:18,16,7,6
chr2	112766319	.	T	C	556.48	PASS	AC=1;AF=0.618;AN=2;DP=980;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:34,13:47:99:307,0,882:19,15,8,5
chr2	112767406	.	A	G	559.16	PASS	AC=1;AF=0.618;AN=2;DP=383;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,11:32:99:256,0,593:14,7,8,3
chr2	112767483	.	A	G	1105.61	PASS	AC=1;AF=0.618;AN=2;DP=1123;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:874,0,1041:18,22,22,16
chr2	112767824	.	A	G	1549.12	PASS	AC=1;AF=0.618;AN=2;DP=1740;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,62:120:99:1614,0,1386:23,35,23,39
chr2	112767941	.	A	G	859.71	PASS	AC=1;AF=0.618;AN=2;DP=723;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:793,0,598:8,16,11,19
chr2	112770770	.	A	G	503.26	PASS	AC=2;AF=0.769;AN=2;DP=2758;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1778,173,0:0,0,32,26
chr2	112770798	.	T	C	1007.34	PASS	AC=2;AF=0.769;AN=2;DP=3123;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2103,177,0:0,0,28,31
chr2	112770799	.	G	A	1007.34	PASS	AC=1;AF=0.567;AN=2;DP=1101;MQ=60;set=variant-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,21:58:99:601,0,931:15,22,11,10
chr2	112773366	.	A	G	813.81	PASS	AC=2;AF=0.769;AN=2;DP=2280;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1863,189,0:0,0,36,27
chr2	112773500	.	A	G	1302.71	PASS	AC=1;AF=0.625;AN=2;DP=1173;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,33:65:99:767,0,709:15,17,13,20
chr2	112773528	.	TCTTGTAC	T	1456.67	PASS	AC=2;AF=0.769;AN=2;DP=2466;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2296,154,0:0,0,18,33
chr2	112776979	.	C	A	1147.38	PASS	AC=1;AF=0.594;AN=2;DP=1308;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant17-variant19-variant20-variant22-variant23-variant30-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,29:84:99:633,0,1524:33,22,14,15
chr2	112779286	.	A	ATC	407.07	PASS	AC=2;AF=0.782;AN=2;DP=898;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:969,69,0:0,0,2,21
chr2	112785775	.	T	C	153.09	PASS	AC=1;AF=0.683;AN=2;DP=499;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:248,0,373:10,2,7,1
chr2	112786751	.	A	G	480.88	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=2.052;FractionInformativeReads=1;MQ=60;MQRankSum=-1.111;QD=6.33;ReadPosRankSum=-1.768;SOR=0.419;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,26:76:99:509,0,1240:31,19,14,12
chr2	112812842	.	T	C	441.34	PASS	AC=1;AF=0.817;AN=2;DP=2970;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,42:74:99:1667,0,1538:18,14,25,17
chr2	112812856	.	C	G	2269.25	PASS	AC=1;AF=0.654;AN=2;DP=2122;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,43:78:99:1700,0,1617:19,16,26,17
chr2	112813066	.	G	C	1045.5	PASS	AC=1;AF=0.654;AN=2;DP=1673;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,40:71:99:1029,0,812:11,20,21,19
chr2	112813163	.	G	A	702.19	PASS	AC=1;AF=0.654;AN=2;DP=1243;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant32-variant34-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,21:37:99:583,0,367:7,9,12,9
chr2	112813391	.	C	G	2136.74	PASS	AC=1;AF=0.817;AN=2;DP=6712;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,78:150:99:1866,0,1626:29,43,33,45
chr2	112821662	.	T	C	407.84	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.68;QD=14.06;ReadPosRankSum=-1.506;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:436,0,489:13,2,13,1
chr2	112832535	.	CAAT	C	1582.53	PASS	AC=1;AF=0.694;AN=2;DP=2096;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,26:61:99:966,0,1925:20,15,14,12
chr2	112832684	.	G	A	518.67	PASS	AC=2;AF=1;AN=2;DP=811;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:594,45,0:0,0,2,13
chr2	112847164	.	C	T	1452.68	PASS	AC=1;AF=0.688;AN=2;DP=3800;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,50:99:99:1331,0,1102:28,21,28,22
chr2	112856165	.	C	A	714.4	PASS	AC=1;AF=0.782;AN=2;DP=3249;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,32:65:99:748,0,826:17,16,19,13
chr2	112858122	.	C	T	175.15	PASS	AC=1;AF=0.694;AN=2;DP=647;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant17-variant18-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:226,0,233:6,3,5,2
chr2	112865517	.	G	C	2143.62	PASS	AC=2;AF=1;AN=2;DP=2836;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1776,183,0:0,0,27,34
chr2	112874268	.	T	TTCCC,TC	107.5	PASS	AC=0,1;AF=0.071,0.429;AN=2;DP=860;MQ=60;set=filterInvariant10-variant11-filterInvariant14-filterInvariant19-filterInvariant23-filterInvariant36-filterInvariant41	GT:DP:GQ:SB	0/2:110:99:17,72,21,0
chr2	112874275	.	CAA	C	252.19	PASS	AC=1;AF=0.5;AN=2;DP=787;MQ=60;set=filterInvariant6-filterInvariant9-filterInvariant10-variant13-filterInvariant29-filterInvariant32-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:99,22:121:72:72,0,5091:21,78,22,0
chr2	112874281	.	A	C	383.61	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=2778;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:79,18:97:99:434,0,4378:5,74,18,0
chr2	112875039	.	A	G	2705.21	PASS	AC=1;AF=0.764;AN=2;DP=7309;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,100:217:99:2567,0,3112:58,59,52,48
chr2	112917102	.	G	C	250.13	PASS	AC=2;AF=0.694;AN=2;DP=1249;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,38:39:99:1250,107,0:1,0,26,12
chr2	112945188	.	T	A	978.94	PASS	AC=2;AF=0.808;AN=2;DP=4320;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3289,295,0:0,0,39,60
chr2	113079576	.	C	A	36.43	PASS	AC=1;AF=0.679;AN=2;DP=77;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant22-variant23-variant25-variant27-variant29-variant31-variant32-variant35-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:99:194,0,110:1,2,3,3
chr2	113082250	.	CT	C	950.89	PASS	AC=1;AF=0.596;AN=2;DP=2353;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,36:87:99:877,0,1345:18,33,11,25
chr2	113089267	.	T	C	1079.74	PASS	AC=1;AF=0.671;AN=2;DP=2936;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,46:98:99:1237,0,1392:28,24,22,24
chr2	113090047	.	T	C	2578.65	PASS	AC=1;AF=0.671;AN=2;DP=8134;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:136,114:250:99:2495,0,3028:69,67,58,56
chr2	113091340	.	A	G	3849.67	PASS	AC=1;AF=0.596;AN=2;DP=7115;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:144,131:275:99:2933,0,3469:80,64,71,60
chr2	113091685	.	T	G	3580.08	PASS	AC=1;AF=0.596;AN=2;DP=4367;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,72:177:99:2032,0,2858:37,68,21,51
chr2	113092433	.	C	A	5841.61	PASS	AC=1;AF=0.596;AN=2;DP=9558;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:169,164:333:99:3965,0,4414:90,79,79,85
chr2	113093928	.	C	T	1120.65	PASS	AC=1;AF=0.596;AN=2;DP=1629;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:696,0,847:11,17,17,11
chr2	113094793	.	G	A	1574.45	PASS	AC=1;AF=0.596;AN=2;DP=3210;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,50:114:99:1147,0,1563:27,37,21,29
chr2	113094921	.	A	G	283.47	PASS	AC=1;AF=0.596;AN=2;DP=536;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:123,0,323:1,9,1,4
chr2	113096857	.	G	C	2270.29	PASS	AC=1;AF=0.596;AN=2;DP=4121;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,75:147:99:2066,0,1853:42,30,48,27
chr2	113097174	.	C	T	1741.28	PASS	AC=1;AF=0.5;AN=2;DP=275;FractionInformativeReads=1;MQ=60;set=variant10-variant20-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,49:90:99:1445,0,1188:14,27,21,28
chr2	113097699	.	T	G	397.85	PASS	AC=1;AF=0.596;AN=2;DP=672;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant17-variant19-variant20-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:362,0,334:2,10,2,10
chr2	113147159	.	G	A	1680.82	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=13290;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:191,64:255:99:789,0,4067:70,121,27,37
chr2	113147238	.	A	G	201.83	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=1657;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:28,12:40:99:199,0,674:2,26,0,12
chr2	113147751	.	A	C	1462.02	PASS	AC=1;AF=0.5;AN=2;DP=126;FS=3.364;FractionInformativeReads=1;MQ=38.58;MQRankSum=0.366;QD=11.6;ReadPosRankSum=0.864;SOR=0.437;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,65:126:99:1490,0,1493:20,41,26,39
chr2	113181783	.	A	G	292.6	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=23;FS=1.603;FractionInformativeReads=1;MQ=25.87;MQRankSum=-0.22;QD=12.72;ReadPosRankSum=-0.094;SOR=1.075;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:321,0,145:5,4,9,5
chr2	113190819	.	G	T	31.73	PASS	AC=1;AF=0.5;AN=2;DP=48;FractionInformativeReads=1;set=filterInvariant25-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,5:22:98:98,0,602:15,2,4,1
chr2	113191088	.	C	T	772.46	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=52.5;MQRankSum=-1.23;QD=16.79;ReadPosRankSum=1.714;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,23:46:99:801,0,768:1,22,1,22
chr2	113191683	.	A	G	354.58	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.739;QD=14.18;ReadPosRankSum=0.411;SOR=1.061;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,14:25:99:383,0,301:7,4,10,4
chr2	113191878	.	G	A	801.23	PASS	AC=1;AF=0.5;AN=2;DP=71;FS=1.955;FractionInformativeReads=1;MQ=60;MQRankSum=-2.501;QD=11.28;ReadPosRankSum=-0.178;SOR=0.571;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,35:71:99:829,0,1051:16,20,18,17
chr2	113239833	.	C	T	544.96	PASS	AC=2;AF=0.6;AN=2;DP=531;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant8-variant9-variant10-variant21-variant25-variant30-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1104,104,0:0,0,25,10
chr2	113240183	.	T	C	626.25	PASS	AC=2;AF=0.611;AN=2;DP=1149;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant16-variant19-variant21-variant22-variant23-variant25-variant30-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1918,156,0:0,0,8,44
chr2	113286562	.	A	G	1958.33	PASS	AC=2;AF=0.977;AN=2;DP=3894;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,86:88:99:2669,177,0:2,0,48,38
chr2	113287329	.	C	G	850.02	PASS	AC=2;AF=0.966;AN=2;DP=1439;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:681,66,0:0,0,12,10
chr2	113287964	.	A	G	237.91	PASS	AC=2;AF=0.83;AN=2;DP=1218;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:991,93,0:0,0,16,15
chr2	113288580	.	G	A	340.19	PASS	AC=2;AF=0.985;AN=2;DP=135;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.731;ReadPosRankSum=0.731;set=variant-variant4-variant6-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,5,0
chr2	113288588	.	C	T	61.77	PASS	AC=2;AF=0.938;AN=2;DP=32;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;ReadPosRankSum=-0.727;set=variant8-variant11-variant20-variant22-variant27-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,5,0
chr2	113289032	.	A	G	1121.51	PASS	AC=1;AF=0.55;AN=2;DP=973;set=variant3-variant5-variant7-variant8-variant11-variant13-variant15-variant17-variant20-variant22-variant23-variant27-variant28-variant31-variant33-variant34-variant36-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,24:47:99:712,0,671:18,5,18,6
chr2	113289701	.	T	G	2268.96	PASS	AC=2;AF=0.977;AN=2;DP=3347;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,79:80:99:2719,230,0:0,1,38,41
chr2	113300330	.	G	A	827.87	PASS	AC=1;AF=0.744;AN=2;DP=1321;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:474,0,599:1,16,0,14
chr2	113303411	.	C	T	31.53	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=0;FractionInformativeReads=1;MQ=60;set=variant16-variant27-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:70:70,0,120:2,3,2,1
chr2	113303463	.	T	C	39.23	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;set=variant8-variant27-variant33-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:91:117,0,91:2,2,2,3
chr2	113306827	.	A	G	605.23	PASS	AC=1;AF=0.5;AN=2;DP=1147;MQ=60;set=variant5-variant8-variant11-variant15-variant16-variant22-variant23-variant27-variant30-variant33-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,32:83:99:817,0,1194:29,22,22,10
chr2	113310197	.	CT	C	1061.63	PASS	AC=1;AF=0.738;AN=2;DP=2142;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:406,0,506:15,9,16,4
chr2	113326281	.	C	G	1264.6	PASS	AC=1;AF=0.837;AN=2;DP=1918;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,19:29:99:507,0,167:6,4,12,7
chr2	113326502	.	C	T	2296.48	PASS	AC=1;AF=0.837;AN=2;DP=3117;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,38:86:99:935,0,1275:17,31,15,23
chr2	113334178	.	A	T	67.44	PASS	AC=1;AF=0.5;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant18-variant19-variant21-variant22-variant27-variant29-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:144,0,279:0,7,1,3
chr2	113344047	.	T	C	5181.59	PASS	AC=1;AF=0.826;AN=2;DP=8777;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,80:179:99:2176,0,2322:46,53,42,38
chr2	113344176	.	T	A	874.57	PASS	AC=1;AF=0.5;AN=2;DP=1432;MQ=60;set=variant2-variant6-variant7-variant9-variant10-variant14-variant16-variant18-variant21-variant34-variant35-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,42:80:99:1179,0,1096:12,26,11,31
chr2	113345313	.	C	G	807.82	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=5.208;FractionInformativeReads=1;MQ=60;MQRankSum=-1.114;QD=13.69;ReadPosRankSum=1.918;SOR=0.777;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,30:59:99:836,0,729:12,17,17,13
chr2	113346512	.	A	C	1090.52	PASS	AC=1;AF=0.833;AN=2;DP=2140;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,31:47:99:887,0,352:8,8,16,15
chr2	113403662	.	T	C	613.4	PASS	AC=2;AF=0.895;AN=2;DP=3669;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:2821,270,0:0,0,39,51
chr2	113404708	.	G	A	1773.12	PASS	AC=1;AF=0.721;AN=2;DP=5388;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,62:129:99:1528,0,1850:25,42,26,36
chr2	113410235	.	A	G	729.18	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=3.442;FractionInformativeReads=1;MQ=60;MQRankSum=1.23;QD=11.57;ReadPosRankSum=-0.447;SOR=1.074;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,32:63:99:757,0,831:15,16,19,13
chr2	113410965	.	A	G	1943.87	PASS	AC=1;AF=0.5;AN=2;DP=201;FS=0.537;FractionInformativeReads=1;MQ=60;MQRankSum=-0.906;QD=9.67;ReadPosRankSum=1.984;SOR=0.643;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:120,81:201:99:1972,0,3210:46,74,32,49
chr2	113416301	.	C	T	304.55	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=2.869;FractionInformativeReads=1;MQ=60;MQRankSum=-0.938;QD=20.3;ReadPosRankSum=-1.66;SOR=0.184;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:69:333,0,69:3,0,8,4
chr2	113417514	.	G	A	274.68	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.184;QD=14.46;ReadPosRankSum=-0.857;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:303,0,303:1,8,2,8
chr2	113418224	.	A	G	405.94	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=2.251;FractionInformativeReads=1;MQ=60;MQRankSum=0.655;QD=15.03;ReadPosRankSum=0.752;SOR=1.739;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,13:27:99:434,0,428:3,11,1,12
chr2	113418276	.	A	AG	97.73	PASS	AC=2;AF=0.927;AN=2;DP=367;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,1,7
chr2	113418277	.	T	TG	97.73	PASS	AC=2;AF=0.927;AN=2;DP=353;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,1,7
chr2	113421334	.	G	A	244.19	PASS	AC=2;AF=0.895;AN=2;DP=1002;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:74:794,74,0:0,0,9,16
chr2	113479568	.	A	G	2204.72	PASS	AC=1;AF=0.5;AN=2;DP=177;FS=2.612;FractionInformativeReads=1;MQ=60;MQRankSum=0.824;QD=12.46;ReadPosRankSum=-0.439;SOR=0.595;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:85,92:177:99:2233,0,2032:46,39,45,47
chr2	113479614	.	G	A	4281.42	PASS	AC=1;AF=0.694;AN=2;DP=6088;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,76:174:99:1795,0,2525:46,52,40,36
chr2	113479745	.	AC	A	1816.51	PASS	AC=2;AF=0.977;AN=2;DP=4991;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,115:115:99:3653,346,0:0,0,45,70
chr2	113479926	.	G	A	295.84	PASS	AC=1;AF=0.5;AN=2;DP=35;FS=1.421;FractionInformativeReads=1;MQ=60;MQRankSum=0.017;QD=8.45;ReadPosRankSum=1.025;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,12:35:99:324,0,644:9,14,6,6
chr2	113480491	.	T	C	196.77	PASS	AC=2;AF=0.977;AN=2;DP=454;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:494,33,0:0,0,6,5
chr2	113480493	.	G	GCCCC	187.73	PASS	AC=2;AF=0.988;AN=2;DP=405;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.729;ReadPosRankSum=-1.307;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:495,33,0:0,0,6,5
chr2	113480495	.	A	AATCCTGC	187.73	PASS	AC=2;AF=0.988;AN=2;DP=392;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.001;ReadPosRankSum=-0.573;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:36:540,36,0:0,0,6,5
chr2	113480498	.	C	CTGGTGCTGCCCCCAAGGGGTG	97.73	PASS	AC=2;AF=0.988;AN=2;DP=388;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.633;ReadPosRankSum=-1.036;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:42:587,42,0:0,0,7,4
chr2	113480532	.	G	A	214.36	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.206;QD=11.28;ReadPosRankSum=-0.95;SOR=0.892;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:243,0,353:9,2,7,1
chr2	113480971	.	C	CACACACAG	347.28	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=0.947;MQ=60;MQRankSum=0.272;QD=18.28;ReadPosRankSum=0.996;SOR=0.97;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,11:18:99:385,0,99:4,3,7,4
chr2	113481439	.	T	A	1600.04	PASS	AC=1;AF=0.682;AN=2;DP=3348;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1341,0,1026:18,21,25,21
chr2	113481547	.	A	G	2005.43	PASS	AC=2;AF=0.977;AN=2;DP=3981;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2426,212,0:0,0,34,37
chr2	113482779	.	A	C	2935.79	PASS	AC=1;AF=0.989;AN=2;DP=6794;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:64,77:141:99:1949,0,1525:32,32,39,38
chr2	113484319	.	G	A	1951.79	PASS	AC=2;AF=1;AN=2;DP=5751;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:3567,349,0:0,0,55,62
chr2	113484353	.	A	G	1580.23	PASS	AC=2;AF=1;AN=2;DP=4206;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2645,258,0:0,0,35,51
chr2	113484441	.	T	G	291.71	PASS	AC=1;AF=0.661;AN=2;DP=637;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:418,0,421:2,10,1,11
chr2	113494250	.	T	C	10451.1	PASS	AC=2;AF=0.977;AN=2;DP=12447;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,262:262:99:8295,785,0:0,0,100,162
chr2	113494891	.	A	G	943.25	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=1.246;FractionInformativeReads=1;MQ=60;MQRankSum=0.184;QD=18.86;ReadPosRankSum=-0.709;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:971,0,1676:20,6,17,7
chr2	113494913	.	C	T	1131.1	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.35;QD=16.63;ReadPosRankSum=0.933;SOR=0.723;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:1159,0,1833:22,13,21,12
chr2	113495120	.	C	T	1734.51	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=2.172;FractionInformativeReads=1;MQ=60;MQRankSum=-0.297;QD=12.85;ReadPosRankSum=2.867;SOR=0.917;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:68,67:135:99:1763,0,1789:34,34,37,30
chr2	113495536	.	CA	C	911.59	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=5.959;FractionInformativeReads=0.98;MQ=60;MQRankSum=0.318;QD=18.23;ReadPosRankSum=-0.031;SOR=0.993;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,30:49:99:949,0,560:11,8,12,18
chr2	113495785	.	T	C	4091.71	PASS	AC=2;AF=0.977;AN=2;DP=4670;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,124:124:99:4108,371,0:0,0,67,57
chr2	113496131	.	A	T	1319.52	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=1.701;FractionInformativeReads=1;MQ=60;MQRankSum=-1.24;QD=13.46;ReadPosRankSum=-0.245;SOR=0.489;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,48:98:99:1348,0,1393:33,17,29,19
chr2	113498337	.	C	T	287.33	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.76;QD=14.37;ReadPosRankSum=1.444;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:316,0,260:7,2,9,2
chr2	113498630	.	T	C	130.49	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.055;QD=7.68;ReadPosRankSum=2.06;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:159,0,315:2,9,1,5
chr2	113510000	.	A	G	307.61	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=1.875;FractionInformativeReads=1;MQ=60;MQRankSum=-0.927;QD=12.82;ReadPosRankSum=2.144;SOR=0.307;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:336,0,319:2,9,4,9
chr2	113513825	.	T	C	5415.05	PASS	AC=2;AF=0.977;AN=2;DP=6127;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,127:127:99:4260,381,0:0,0,59,68
chr2	113522021	.	G	T	228.83	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.184;QD=12.04;ReadPosRankSum=0.531;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:257,0,291:8,1,8,2
chr2	113531715	.	T	TTGAA	7611.35	PASS	AC=2;AF=0.732;AN=2;DP=6534;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:6497,444,0:0,0,64,82
chr2	113532236	.	T	C	6650.48	PASS	AC=1;AF=0.591;AN=2;DP=5264;MQ=60;set=variant2-variant8-variant9-variant11-variant12-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant30-variant31-variant32-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,137:241:99:3537,0,2691:48,56,70,67
chr2	113532885	.	G	T	2732.22	PASS	AC=2;AF=0.732;AN=2;DP=3993;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2849,264,0:0,0,29,59
chr2	113535395	.	G	T	652.2	PASS	AC=2;AF=0.732;AN=2;DP=933;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:689,54,0:0,0,14,4
chr2	113540084	.	G	A	743.66	PASS	AC=2;AF=0.744;AN=2;DP=764;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:778,72,0:0,0,17,7
chr2	113540144	.	G	A	363.89	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.288;QD=7;ReadPosRankSum=3.169;SOR=0.704;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,20:52:99:392,0,787:19,13,12,8
chr2	113540177	.	C	T	1380.42	PASS	AC=1;AF=0.591;AN=2;DP=1165;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant9-variant11-variant12-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant30-variant31-variant32-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,29:67:99:663,0,928:19,19,18,11
chr2	113540205	.	G	T	2531.26	PASS	AC=2;AF=0.732;AN=2;DP=2701;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2221,207,0:0,0,36,33
chr2	113541382	.	C	T	1104.11	PASS	AC=1;AF=0.5;AN=2;DP=93;FS=0.776;FractionInformativeReads=1;MQ=60;MQRankSum=-1.427;QD=11.87;ReadPosRankSum=2.535;SOR=0.603;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,44:93:99:1132,0,1219:20,29,19,25
chr2	113588302	.	C	T	237.96	PASS	AC=1;AF=0.536;AN=2;DP=321;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant26-variant27-variant29-variant31-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:164,0,332:3,8,1,5
chr2	113590467	.	C	T	388.06	PASS	AC=1;AF=0.536;AN=2;DP=1149;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant26-variant27-variant29-variant31-variant33-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:430,0,476:2,13,5,10
chr2	113594387	.	G	A	357.73	PASS	AC=2;AF=0.711;AN=2;DP=1016;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:928,90,0:0,0,13,17
chr2	113671303	.	T	C	3199.29	PASS	AC=2;AF=0.775;AN=2;DP=4049;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3090,284,0:0,0,61,34
chr2	113671378	.	G	T	2495.75	PASS	AC=2;AF=0.775;AN=2;DP=4089;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3631,318,0:0,0,54,52
chr2	113671410	.	A	G	1817.15	PASS	AC=2;AF=0.775;AN=2;DP=3154;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3351,300,0:0,0,43,57
chr2	113671518	.	G	A	278.65	PASS	AC=2;AF=0.782;AN=2;DP=652;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:82:1058,82,0:0,0,4,24
chr2	113675959	.	G	T	368.27	PASS	AC=2;AF=0.977;AN=2;DP=368;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:226,18,0:0,0,4,2
chr2	113676659	.	T	C	2325.36	PASS	AC=2;AF=0.932;AN=2;DP=2540;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:2184,180,0:0,0,13,47
chr2	113742734	.	G	A	1034.35	PASS	AC=1;AF=0.756;AN=2;DP=1747;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,40:61:99:1159,0,644:10,11,16,24
chr2	113763575	.	A	G	3801.07	PASS	AC=1;AF=0.756;AN=2;DP=5712;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,62:123:99:1574,0,1535:33,28,26,36
chr2	113765780	.	C	T	155.6	PASS	AC=1;AF=0.5;AN=2;DP=602;MQ=60;set=variant-variant4-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant28-variant33-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:636,0,689:3,18,4,16
chr2	113779875	.	G	A	5514.73	PASS	AC=1;AF=0.658;AN=2;DP=7025;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:69,103:172:99:2800,0,1664:37,32,55,48
chr2	113783570	.	C	T	926.59	PASS	AC=1;AF=0.658;AN=2;DP=1004;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:257,0,517:11,3,8,1
chr2	113783909	.	A	T	1677.15	PASS	AC=1;AF=0.788;AN=2;DP=1946;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:692,0,866:7,24,8,19
chr2	113785020	.	A	G	7717.19	PASS	AC=1;AF=0.697;AN=2;DP=8983;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:120,126:246:99:3203,0,3320:75,45,72,54
chr2	113785202	.	G	A	9009.99	PASS	AC=1;AF=0.671;AN=2;DP=10359;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:138,100:238:99:2656,0,3786:52,86,42,58
chr2	113785727	.	A	G	683.69	PASS	AC=2;AF=0.977;AN=2;DP=1048;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:598,54,0:0,0,7,11
chr2	113786833	.	C	G	344.41	PASS	AC=2;AF=0.782;AN=2;DP=547;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:475,39,0:0,0,2,11
chr2	113789316	.	C	T	222.57	PASS	AC=2;AF=0.73;AN=2;DP=926;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:772,69,0:0,0,11,12
chr2	113816090	.	T	A	45.95	PASS	AC=2;AF=0.789;AN=2;DP=491;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:506,48,0:0,0,11,5
chr2	113816940	.	C	G	1132.93	PASS	AC=2;AF=0.636;AN=2;DP=2843;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2828,193,0:0,0,31,31
chr2	113816942	.	A	C	1132.93	PASS	AC=2;AF=0.636;AN=2;DP=2868;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:2828,193,0:0,0,31,32
chr2	113818632	.	G	A	622.22	PASS	AC=2;AF=0.689;AN=2;DP=1872;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1397,132,0:0,0,14,30
chr2	113818702	.	G	C	146.08	PASS	AC=2;AF=0.703;AN=2;DP=543;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:536,42,0:0,0,3,11
chr2	113819614	.	T	C	683.09	PASS	AC=2;AF=0.689;AN=2;DP=2617;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2333,219,0:0,0,49,24
chr2	113820476	.	T	C	535.79	PASS	AC=2;AF=0.689;AN=2;DP=1577;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1073,99,0:0,0,18,15
chr2	113820530	.	A	G	502.35	PASS	AC=2;AF=0.689;AN=2;DP=1880;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1248,111,0:0,0,19,18
chr2	113820580	.	C	A	584.43	PASS	AC=2;AF=0.689;AN=2;DP=2055;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1581,144,0:0,0,29,19
chr2	113820655	.	A	T	1016.38	PASS	AC=2;AF=0.689;AN=2;DP=2664;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1919,174,0:0,0,38,20
chr2	113820672	.	A	G	1136.43	PASS	AC=2;AF=0.689;AN=2;DP=2876;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2279,204,0:0,0,42,26
chr2	113820732	.	T	C	1427.08	PASS	AC=2;AF=0.689;AN=2;DP=3466;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2561,236,0:0,0,43,36
chr2	113820814	.	C	G	1560.23	PASS	AC=2;AF=0.689;AN=2;DP=3975;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3771,332,0:0,0,61,50
chr2	113821117	.	C	T	1314.13	PASS	AC=2;AF=0.756;AN=2;DP=5923;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4252,446,0:0,0,84,65
chr2	113821200	.	T	C	1528.48	PASS	AC=2;AF=0.689;AN=2;DP=6398;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5277,500,0:0,0,81,86
chr2	113821653	.	T	C	251.41	PASS	AC=2;AF=0.689;AN=2;DP=1371;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:924,87,0:0,0,13,16
chr2	113825386	.	C	A	41.46	PASS	AC=2;AF=0.788;AN=2;DP=155;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant8-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant35-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:245,21,0:0,0,6,1
chr2	113829869	.	G	T	125.48	PASS	AC=2;AF=0.652;AN=2;DP=536;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:872,75,0:0,0,19,6
chr2	113830173	.	C	T	1079.22	PASS	AC=1;AF=0.5;AN=2;DP=450;FractionInformativeReads=1;MQ=60;set=variant13-variant33-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,28:77:99:702,0,1533:27,22,21,7
chr2	113830201	.	T	G	1912.71	PASS	AC=2;AF=0.711;AN=2;DP=4031;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3205,300,0:0,0,61,39
chr2	113830563	.	G	A	657.83	PASS	AC=1;AF=0.689;AN=2;DP=1908;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,29:48:99:765,0,515:5,14,9,20
chr2	113830582	.	A	C	634.67	PASS	AC=2;AF=0.718;AN=2;DP=1473;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1134,90,0:0,0,6,24
chr2	113830688	.	G	A	106.77	PASS	AC=2;AF=0.758;AN=2;DP=245;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant30-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:279,24,0:0,0,2,6
chr2	113832124	.	C	A	613.28	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=3.304;FractionInformativeReads=1;MQ=60;MQRankSum=-0.384;QD=19.17;ReadPosRankSum=-0.729;SOR=0.299;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:642,0,412:10,3,12,7
chr2	113832312	.	T	C	1311.79	PASS	AC=1;AF=0.736;AN=2;DP=4030;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:64,44:108:99:1055,0,1783:29,35,16,28
chr2	113832333	.	C	A	1165.89	PASS	AC=2;AF=0.75;AN=2;DP=3516;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2949,281,0:0,0,38,56
chr2	113832981	.	C	T	1330.77	PASS	AC=1;AF=0.619;AN=2;DP=2998;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant24-variant25-variant27-variant30-variant34-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,64:135:99:1601,0,1739:32,39,26,38
chr2	113875428	.	G	A	75.13	PASS	AC=1;AF=0.591;AN=2;DP=402;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,15:27:99:383,0,295:7,5,10,5
chr2	113875509	.	G	A	409.88	PASS	AC=1;AF=0.591;AN=2;DP=968;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:632,0,692:15,10,14,11
chr2	113875565	.	A	G	730.15	PASS	AC=1;AF=0.591;AN=2;DP=1505;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:1174,0,1309:20,15,15,14
chr2	113875584	.	G	C	970.97	PASS	AC=1;AF=0.591;AN=2;DP=1662;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:1158,0,1390:19,18,17,15
chr2	113875631	.	T	C	686.39	PASS	AC=1;AF=0.591;AN=2;DP=1886;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,36:74:99:910,0,916:19,19,15,21
chr2	113875753	.	C	G	566.8	PASS	AC=1;AF=0.591;AN=2;DP=1011;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,22:44:99:790,0,1095:8,14,10,12
chr2	113875773	.	A	G	424.91	PASS	AC=1;AF=0.591;AN=2;DP=802;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:644,0,904:7,10,8,10
chr2	113877495	.	G	T	584.72	PASS	AC=2;AF=0.886;AN=2;DP=1149;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:869,81,0:0,0,19,8
chr2	113877538	.	G	C	324.6	PASS	AC=1;AF=0.591;AN=2;DP=914;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,15:40:99:387,0,748:17,8,9,6
chr2	113877713	.	A	C	336.8	PASS	AC=1;AF=0.591;AN=2;DP=864;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:676,0,587:6,14,11,15
chr2	113887207	.	T	C	1037.16	PASS	AC=1;AF=0.614;AN=2;DP=2485;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,62:104:99:1576,0,1034:21,21,26,36
chr2	113887262	.	C	T	1061.77	PASS	AC=1;AF=0.614;AN=2;DP=1894;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,52:95:99:1224,0,1017:19,24,20,32
chr2	113887273	.	G	A	991.79	PASS	AC=1;AF=0.614;AN=2;DP=1715;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,46:87:99:1017,0,967:18,23,20,26
chr2	113887294	.	G	C	839.39	PASS	AC=1;AF=0.614;AN=2;DP=1335;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,32:64:99:759,0,761:12,20,10,22
chr2	113887338	.	A	C	474.68	PASS	AC=1;AF=0.619;AN=2;DP=573;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:382,0,463:4,11,2,11
chr2	113888465	.	A	G	974.01	PASS	AC=1;AF=0.591;AN=2;DP=948;FractionInformativeReads=1;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,19:49:99:708,0,1807:19,11,13,6
chr2	113888470	.	C	G	1058.2	PASS	AC=1;AF=0.591;AN=2;DP=992;FractionInformativeReads=1;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,19:50:99:705,0,1829:19,12,13,6
chr2	113888557	.	G	A	1147.88	PASS	AC=1;AF=0.583;AN=2;DP=2218;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,38:98:99:1343,0,3452:34,26,25,13
chr2	113888579	.	T	C	1466.84	PASS	AC=1;AF=0.591;AN=2;DP=2440;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,47:120:99:1538,0,3704:40,33,26,21
chr2	113888793	.	A	T	1600.44	PASS	AC=1;AF=0.587;AN=2;DP=3065;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,66:135:99:1624,0,1607:29,40,25,41
chr2	113888900	.	T	A	488.01	PASS	AC=2;AF=0.72;AN=2;DP=1490;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1181,99,0:0,0,6,27
chr2	113891412	.	G	A	474.78	PASS	AC=1;AF=0.609;AN=2;DP=1072;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant24-variant25-variant27-variant30-variant31-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:428,0,614:14,10,12,7
chr2	113953401	.	A	G	814.17	PASS	AC=2;AF=1;AN=2;DP=3820;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2278,216,0:0,0,29,43
chr2	113953508	.	G	A	672.71	PASS	AC=1;AF=0.533;AN=2;DP=833;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant12-variant16-variant23-variant24-variant25-variant26-variant32-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:582,0,807:13,14,8,15
chr2	113953657	.	A	C	2274.28	PASS	AC=1;AF=0.621;AN=2;DP=3825;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,58:107:99:1460,0,1155:29,20,34,24
chr2	113953952	.	T	C	775.97	PASS	AC=1;AF=0.621;AN=2;DP=1380;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,19:39:99:535,0,639:3,17,6,13
chr2	113953973	.	A	AT	580.73	PASS	AC=1;AF=0.621;AN=2;DP=989;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:652,0,579:0,14,4,13
chr2	113953974	.	GACA	G	580.73	PASS	AC=1;AF=0.621;AN=2;DP=953;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:652,0,579:0,15,4,13
chr2	113953984	.	G	A	335.95	PASS	AC=1;AF=0.533;AN=2;DP=330;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant8-variant12-variant16-variant23-variant24-variant25-variant26-variant32-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:13,11:24:99:403,0,555:3,10,0,11
chr2	113954006	.	A	G	362.08	PASS	AC=1;AF=0.625;AN=2;DP=495;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:307,0,256:0,7,2,8
chr2	113954879	.	A	C	3799.47	PASS	AC=1;AF=0.621;AN=2;DP=3105;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,73:114:99:1815,0,1032:23,18,38,35
chr2	113955074	.	G	A	3815.33	PASS	AC=1;AF=0.621;AN=2;DP=4373;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,75:149:99:1885,0,2142:39,35,36,39
chr2	113956371	.	G	C	5454.3	PASS	AC=1;AF=0.621;AN=2;DP=6874;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,87:176:99:2237,0,2356:49,40,42,45
chr2	113956821	.	C	G	2597.97	PASS	AC=1;AF=0.621;AN=2;DP=3416;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,56:117:99:1451,0,1540:20,41,18,38
chr2	113959452	.	A	G	2238	PASS	AC=2;AF=1;AN=2;DP=3425;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2082,216,0:0,0,41,31
chr2	113973467	.	T	C	211.67	PASS	AC=1;AF=0.529;AN=2;DP=165;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant10-variant16-variant17-variant19-variant23-variant24-variant25-variant26-variant30-variant32-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,2:8:66:66,0,180:5,1,2,0
chr2	113973632	.	G	A	869.92	PASS	AC=1;AF=0.621;AN=2;DP=1280;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:423,0,751:16,12,10,10
chr2	113973801	.	T	C	1286.45	PASS	AC=2;AF=0.726;AN=2;DP=2385;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1827,171,0:0,0,27,30
chr2	113973964	.	T	C	1544.39	PASS	AC=1;AF=0.621;AN=2;DP=2203;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,35:63:99:834,0,645:14,14,16,19
chr2	113974196	.	G	C	597.27	PASS	AC=1;AF=0.526;AN=2;DP=734;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant10-variant12-variant14-variant16-variant17-variant19-variant23-variant24-variant25-variant26-variant30-variant32-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,22:39:99:496,0,509:10,7,11,11
chr2	113974303	.	G	C	935.18	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0;FractionInformativeReads=0.986;MQ=60;MQRankSum=-1.378;QD=13.36;ReadPosRankSum=-1.51;SOR=0.739;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:963,0,1053:25,12,22,10
chr2	113977454	.	G	A	1089.45	PASS	AC=1;AF=0.58;AN=2;DP=634;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant8-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant21-variant25-variant27-variant28-variant29-variant30-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:283,0,536:14,4,8,3
chr2	113977862	.	T	G	201.22	PASS	AC=2;AF=1;AN=2;DP=593;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.552;ReadPosRankSum=1.552;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:743,69,0:0,0,8,15
chr2	113992967	.	G	A	465.98	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.896;QD=12.59;ReadPosRankSum=2.932;SOR=0.551;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,19:37:99:494,0,480:13,5,13,6
chr2	113994141	.	C	T	527.12	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.215;QD=11.71;ReadPosRankSum=-0.329;SOR=0.634;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:555,0,645:16,7,15,7
chr2	113994417	.	G	T	158.3	PASS	AC=1;AF=0.611;AN=2;DP=1450;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,26:51:99:659,0,681:7,18,6,20
chr2	114000458	.	C	A	1227.62	PASS	AC=2;AF=1;AN=2;DP=2052;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1729,162,0:0,0,20,34
chr2	114020848	.	T	G	916.27	PASS	AC=2;AF=0.679;AN=2;DP=2384;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1832,170,0:0,0,36,21
chr2	114036436	.	G	C	2992.08	PASS	AC=1;AF=0.989;AN=2;DP=4786;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:48,38:86:99:909,0,1242:29,19,21,17
chr2	114210817	.	GT	G	520.58	PASS	AC=1;AF=0.5;AN=2;DP=823;set=variant5-variant7-variant11-variant13-variant14-variant18-variant20-variant27-variant29-variant31-variant34-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:230,0,369:4,12,3,8
chr2	114213299	.	AT	A	30.94	PASS	AC=1;AF=0.5;AN=2;DP=772;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant6-variant7-variant9-variant11-variant13-variant14-variant15-filterInvariant19-variant20-variant21-variant22-variant25-variant27-variant29-variant31-variant33-variant34-variant35-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:68:103,0,68:1,3,0,6
chr2	114220055	.	T	C	1040.69	PASS	AC=1;AF=0.5;AN=2;DP=1769;set=variant5-variant7-variant11-variant13-variant14-variant18-variant20-variant27-variant29-variant31-variant34-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,59:104:99:1588,0,1063:22,23,28,31
chr2	114251453	.	AGTT	A	2032.82	PASS	AC=2;AF=0.75;AN=2;DP=355;FS=0;set=variant5-variant6-variant30-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:2508,169,0:0,0,28,28
chr2	114256759	.	A	G	288.1	PASS	AC=1;AF=0.5;AN=2;DP=365;FractionInformativeReads=1;set=variant5-variant7-variant11-variant13-variant14-variant18-variant20-variant29-filterInvariant31-variant34-variant40-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:199,0,355:8,5,5,4
chr2	114256840	.	C	T	467	PASS	AC=1;AF=0.5;AN=2;DP=732;FractionInformativeReads=1;set=variant5-variant7-filterInvariant11-variant13-variant14-variant18-filterInvariant20-variant27-variant29-variant31-variant34-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,12:45:99:341,0,1467:19,14,5,7
chr2	114256859	.	C	T	445.3	PASS	AC=1;AF=0.5;AN=2;DP=690;FractionInformativeReads=1;set=variant5-variant7-variant13-variant14-variant18-filterInvariant27-variant29-variant31-variant34-filterInvariant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,9:45:99:270,0,1518:20,16,2,7
chr2	114335380	.	A	G	43.71	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=342;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:28:105,0,28:1,1,2,3
chr2	114335753	.	T	G	183.34	PASS	AC=1;AF=0.8;AN=2;DP=358;set=variant-variant2-variant3-variant4-variant5-variant10-variant13-variant17-variant19-variant25-variant31-filterInvariant35-variant39-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:41,6:47:98:98,0,995:22,19,0,6
chr2	114340433	.	A	G	119.88	PASS	AC=1;AF=0.5;AN=2;DP=684;set=variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:196,0,330:9,5,6,3
chr2	114340494	.	G	A	64.66	PASS	AC=1;AF=0.5;AN=2;DP=1755;FractionInformativeReads=1;set=variant-variant2-variant3-variant5-variant6-variant8-filterInvariant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant20-filterInvariant22-variant23-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:474,0,669:16,13,11,12
chr2	114340663	.	G	A	262.84	PASS	AC=1;AF=0.5;AN=2;DP=1814;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,21:44:99:730,0,829:10,13,9,12
chr2	114340677	.	C	A	237.1	PASS	AC=1;AF=0.5;AN=2;DP=1576;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:675,0,744:7,12,6,10
chr2	114340706	.	A	G	310.29	PASS	AC=1;AF=0.5;AN=2;DP=926;set=variant3-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,9:20:99:222,0,305:3,8,1,8
chr2	114346484	.	C	T	80.75	DRAGENHardSNP	AC=1;AF=0.654;AN=2;DP=583;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:75:142,0,75:2,2,4,3
chr2	114346531	.	A	G	358.79	DRAGENHardSNP	AC=1;AF=0.602;AN=2;DP=1769;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:9,21:30:99:435,0,140:6,3,12,9
chr2	114346567	.	G	A	382.72	DRAGENHardSNP	AC=1;AF=0.535;AN=2;DP=2778;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:12,27:39:99:552,0,189:8,4,14,13
chr2	114346582	.	A	G	822.49	DRAGENHardSNP	AC=1;AF=0.602;AN=2;DP=3232;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:15,28:43:99:564,0,249:9,6,14,14
chr2	114346668	.	ACC	A	1177.76	PASS	AC=1;AF=0.602;AN=2;DP=2213;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:205,0,407:4,5,2,4
chr2	114351882	.	C	T	485.17	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=2.851;FractionInformativeReads=1;MQ=46.55;MQRankSum=-0.672;QD=11.03;ReadPosRankSum=0.978;SOR=1.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:513,0,586:15,9,15,5
chr2	114352806	.	T	C	209.36	PASS	AC=1;AF=0.5;AN=2;DP=1138;set=filterInvariant-filterInvariant2-variant3-filterInvariant4-variant5-variant6-variant7-variant9-filterInvariant10-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-filterInvariant40-variant41-filterInvariant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,4:27:99:99,0,812:10,13,2,2
chr2	114352820	.	C	T	193.62	PASS	AC=1;AF=0.5;AN=2;DP=877;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-filterInvariant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant19-variant21-variant22-variant23-variant28-variant30-variant32-variant33-variant34-variant37-variant38-variant40-variant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,4:21:99:117,0,702:6,11,2,2
chr2	114353296	.	C	T	67.61	PASS	AC=1;AF=0.5;AN=2;DP=4841;set=filterInvariant-filterInvariant2-filterInvariant5-variant6-variant7-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant16-filterInvariant17-filterInvariant20-filterInvariant22-filterInvariant26-variant27-filterInvariant29-filterInvariant32-filterInvariant33-filterInvariant37-filterInvariant38-variant40-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:168,30:198:99:149,0,4004:85,83,15,15
chr2	114353351	.	C	T	1495.73	PASS	AC=1;AF=0.5;AN=2;DP=3564;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant19-variant20-variant21-variant27-variant30-variant31-variant34-variant35-variant36-filterInvariant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,39:126:99:716,0,2013:34,53,19,20
chr2	114353635	.	A	G	250.1	PASS	AC=1;AF=0.636;AN=2;DP=803;FractionInformativeReads=1;set=variant-variant2-variant4-filterInvariant6-variant7-variant9-variant10-variant13-variant16-variant19-variant20-filterInvariant21-variant27-filterInvariant30-variant31-filterInvariant34-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,7:28:99:162,0,502:8,13,2,5
chr2	114355998	.	C	G	130.79	PASS	AC=1;AF=0.5;AN=2;DP=2885;set=filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-variant14-filterInvariant15-filterInvariant18-variant19-filterInvariant20-variant21-variant23-filterInvariant24-variant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant31-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-variant38-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:74,13:87:83:83,0,1792:39,35,9,4
chr2	114356059	.	G	A	1789.37	PASS	AC=1;AF=0.5;AN=2;DP=3257;set=filterInvariant-variant2-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-variant9-filterInvariant10-filterInvariant13-variant16-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant27-filterInvariant30-filterInvariant31-filterInvariant34-variant35-filterInvariant36-filterInvariant37-filterInvariant39-variant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,34:116:99:523,0,1961:40,42,16,18
chr2	114356221	.	C	T	34.98	PASS	AC=2;AF=0.75;AN=2;DP=26;FS=0;set=filterInvariant-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,19:20:33:614,33,0:0,1,5,14
chr2	114356341	.	C	G	196.23	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=39.74;MQRankSum=0.747;QD=24.53;ReadPosRankSum=0.747;SOR=1.447;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:17:224,0,17:1,0,2,5
chr2	114357350	.	T	C	828.98	PASS	AC=1;AF=0.611;AN=2;DP=1289;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant16-variant19-variant20-variant21-variant23-variant27-variant30-variant31-filterInvariant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,15:44:99:316,0,947:24,5,12,3
chr2	114357862	.	C	T	735.31	PASS	AC=1;AF=0.667;AN=2;DP=1823;set=variant-variant2-variant4-filterInvariant5-variant6-variant7-variant9-filterInvariant10-filterInvariant13-variant16-filterInvariant19-variant20-filterInvariant21-variant22-variant25-variant26-filterInvariant27-variant30-variant31-variant34-variant35-variant36-filterInvariant37-variant39-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:63,20:83:99:407,0,1577:21,42,3,17
chr2	114357926	.	CCT	C	1213.23	PASS	AC=1;AF=0.604;AN=2;DP=1334;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant27-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,19:54:99:680,0,1500:13,22,4,15
chr2	114358139	.	TA	T	406.68	PASS	AC=1;AF=0.661;AN=2;DP=1160;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant16-variant17-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:426,0,591:14,5,10,5
chr2	114358432	.	TGGG	T	1087.85	PASS	AC=1;AF=0.583;AN=2;DP=1205;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant27-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,21:48:99:784,0,2763:12,15,10,11
chr2	114358437	.	C	T	1106.39	PASS	AC=1;AF=0.583;AN=2;DP=1175;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant27-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:787,0,2718:11,14,10,10
chr2	114358438	.	CA	C	1097.35	PASS	AC=1;AF=0.583;AN=2;DP=1176;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant27-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:790,0,2662:10,13,10,10
chr2	114358772	.	G	A	1547.26	PASS	AC=1;AF=0.604;AN=2;DP=1480;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant27-filterInvariant30-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:15,24:39:99:509,0,278:9,6,13,11
chr2	114369771	.	C	T	296.37	PASS	AC=1;AF=0.543;AN=2;DP=719;set=filterInvariant-variant2-filterInvariant4-filterInvariant6-variant7-variant9-variant10-variant13-variant16-variant19-filterInvariant20-variant21-filterInvariant26-filterInvariant27-variant31-filterInvariant34-variant35-filterInvariant36-filterInvariant37-filterInvariant39-variant41-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,20:45:99:411,0,746:7,18,10,10
chr2	114369935	.	T	G	193.67	PASS	AC=1;AF=0.8;AN=2;DP=136;FS=0;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-filterInvariant13-variant15-variant17-variant19-filterInvariant23-variant26-variant27-variant28-variant29-variant30-variant31-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:101,0,34:0,1,0,3
chr2	114386338	.	G	A	1005.17	PASS	AC=1;AF=0.6;AN=2;DP=895;FractionInformativeReads=1;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant26-variant27-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,17:35:99:413,0,454:11,7,12,5
chr2	114425425	.	C	A	577.5	PASS	AC=1;AF=0.63;AN=2;DP=636;FractionInformativeReads=1;set=variant-variant2-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant13-variant16-variant19-variant20-variant21-variant26-variant27-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,9:28:99:211,0,522:16,3,7,2
chr2	114426115	.	T	C	1269.78	PASS	AC=1;AF=0.688;AN=2;DP=4356;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,41:123:99:927,0,2166:49,33,27,14
chr2	114470778	.	G	A	5384.82	PASS	AC=2;AF=0.817;AN=2;DP=8326;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,214:214:99:6266,641,0:0,0,104,110
chr2	114470840	.	A	T	2119.84	PASS	AC=1;AF=0.5;AN=2;DP=149;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.866;QD=14.23;ReadPosRankSum=0.363;SOR=0.661;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,76:149:99:2148,0,2056:33,40,35,41
chr2	114471061	.	T	C	14208.2	PASS	AC=1;AF=0.614;AN=2;DP=8649;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant13-variant16-variant20-variant21-variant26-variant27-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:189,201:390:99:4969,0,4739:103,86,100,101
chr2	114471346	.	A	AGAG,AAGAG,AAAGAG,AAAAGAG,AG	2043.1	PASS	AC=0,1,0,0,0;AF=0.179,0.375,0.125,0.018,0.018;AN=2;DP=2002;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:50:99:9,17,10,14
chr2	114471782	.	C	T	3559	PASS	AC=1;AF=0.614;AN=2;DP=2387;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant13-variant16-variant20-variant21-variant26-variant27-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,43:101:99:1270,0,1650:21,37,13,30
chr2	114471921	.	A	G	1042.8	PASS	AC=1;AF=0.583;AN=2;DP=1276;MQ=60;set=variant3-variant4-variant7-variant12-variant15-variant16-variant17-variant23-variant24-variant28-variant29-variant32-variant33-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,35:64:99:930,0,785:16,13,15,20
chr2	114471932	.	G	C	1630.12	PASS	AC=1;AF=0.697;AN=2;DP=2323;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:785,0,934:14,21,17,12
chr2	114476582	.	C	A	568.49	PASS	AC=1;AF=0.703;AN=2;DP=663;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:144,0,275:7,1,3,1
chr2	114480812	.	A	AAAC	446.07	PASS	AC=2;AF=0.825;AN=2;DP=880;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:778,54,0:0,0,5,13
chr2	114486907	.	T	C	151.77	PASS	AC=1;AF=0.724;AN=2;DP=276;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant19-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:99:114,0,111:3,0,2,1
chr2	114492135	.	C	T	1855.07	PASS	AC=1;AF=0.697;AN=2;DP=2174;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,29:64:99:693,0,854:16,19,11,18
chr2	114493260	.	A	G	113.25	PASS	AC=2;AF=0.708;AN=2;DP=69;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant12-variant15-variant17-variant24-variant28-variant29-variant32-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:139,12,0:0,0,3,1
chr2	114493509	.	CT	C	1026.11	PASS	AC=1;AF=0.583;AN=2;DP=1333;MQ=60;set=variant3-variant4-variant7-variant12-variant15-variant16-variant17-variant23-variant24-variant28-variant29-variant32-variant33-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,19:54:99:443,0,948:12,23,7,12
chr2	114493524	.	C	T	1427.42	PASS	AC=1;AF=0.697;AN=2;DP=1985;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,34:53:99:969,0,446:7,12,11,23
chr2	114499605	.	A	C	13338.8	PASS	AC=1;AF=0.697;AN=2;DP=13575;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:205,192:397:99:4600,0,5017:108,97,95,97
chr2	114500131	.	C	A	10078.3	PASS	AC=1;AF=0.697;AN=2;DP=9217;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:158,117:275:99:3067,0,4036:65,93,48,69
chr2	114501112	.	C	T	276.84	PASS	AC=1;AF=0.588;AN=2;DP=412;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant12-variant15-variant16-variant17-variant23-variant24-variant28-variant29-variant32-variant33-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,13:33:99:361,0,620:15,5,9,4
chr2	114501242	.	T	C	2470.53	PASS	AC=1;AF=0.614;AN=2;DP=1689;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant13-variant16-variant20-variant21-variant26-variant27-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,53:87:99:1300,0,730:16,18,26,27
chr2	114503630	.	T	G	232.42	PASS	AC=1;AF=0.588;AN=2;DP=186;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant7-variant12-variant15-variant16-variant17-variant23-variant24-variant28-variant29-variant32-variant33-variant36-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:271,0,189:5,0,7,0
chr2	114507947	.	T	C	717.05	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=1.367;FractionInformativeReads=1;MQ=60;MQRankSum=0.447;QD=17.49;ReadPosRankSum=1.204;SOR=1.051;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,26:41:99:745,0,347:10,5,19,7
chr2	114513386	.	C	T	2064.95	PASS	AC=1;AF=0.697;AN=2;DP=2493;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,34:64:99:940,0,817:18,12,19,15
chr2	114513787	.	C	G	4230.46	PASS	AC=2;AF=0.919;AN=2;DP=7300;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,183:183:99:5576,549,0:0,0,104,79
chr2	114513901	.	C	T	2710.65	PASS	AC=1;AF=0.583;AN=2;DP=3900;MQ=60;set=variant3-variant4-variant7-variant12-variant15-variant16-variant17-variant23-variant24-variant28-variant29-variant32-variant33-variant36-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:121,91:212:99:2037,0,3065:53,68,45,46
chr2	114514098	.	A	C	2778.48	PASS	AC=1;AF=0.697;AN=2;DP=3999;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,57:124:99:1464,0,1545:33,34,24,33
chr2	114514298	.	C	T	954.55	PASS	AC=1;AF=0.579;AN=2;DP=1927;MQ=60;set=variant-variant2-variant6-variant7-variant9-variant10-variant13-variant16-variant21-variant26-variant27-variant31-variant34-variant35-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,29:77:99:597,0,1282:23,25,15,14
chr2	114514338	.	T	G	1882.93	PASS	AC=1;AF=0.697;AN=2;DP=3645;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant19-variant20-variant21-variant22-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,32:87:99:801,0,1290:29,26,18,14
chr2	114514391	.	T	G	1683.92	PASS	AC=2;AF=0.817;AN=2;DP=4067;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2477,245,0:0,0,40,42
chr2	114647551	.	G	C	247.9	PASS	AC=1;AF=0.5;AN=2;DP=53;MQ=60;set=variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:372,0,177:5,0,9,1
chr2	114647945	.	A	G	222.21	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.424;QD=11.11;ReadPosRankSum=-2.43;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:250,0,398:7,5,4,4
chr2	114715533	.	G	A	1215.25	PASS	AC=1;AF=0.738;AN=2;DP=2312;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,18:58:99:484,0,1076:14,26,9,9
chr2	114716178	.	GT	G,GTT	109.7	PASS	AC=1,0;AF=0.429,0.143;AN=2;DP=373;MQ=60;set=variant10-variant14-variant15-variant16-variant23-variant25-variant28-variant29-variant30-variant31-variant35-variant38-variant41-variant42	GT:DP:GQ:SB	0/1:35:99:10,6,15,4
chr2	114716365	.	G	A	2187.59	PASS	AC=1;AF=0.545;AN=2;DP=1795;FractionInformativeReads=1;MQ=60;set=variant10-variant14-variant15-variant16-variant25-variant28-variant29-variant30-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:95,66:161:99:1622,0,2353:51,44,31,35
chr2	114716920	.	A	C	3277.27	PASS	AC=1;AF=0.5;AN=2;DP=891;FractionInformativeReads=1;MQ=60;set=variant29-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:194,114:308:99:2637,0,5387:107,87,59,55
chr2	114718282	.	A	G	2406.11	PASS	AC=1;AF=0.5;AN=2;DP=175;FS=0.555;FractionInformativeReads=1;MQ=60;MQRankSum=1.204;QD=13.75;ReadPosRankSum=-1.043;SOR=0.763;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:88,87:175:99:2434,0,2345:45,43,46,41
chr2	114719451	.	A	G	12648.4	PASS	AC=1;AF=0.738;AN=2;DP=14420;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:159,148:307:99:3710,0,4341:80,79,76,72
chr2	115919270	.	G	C	816.33	PASS	AC=1;AF=0.5;AN=2;DP=138;FractionInformativeReads=1;MQ=60;set=variant11-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,16:24:99:422,0,210:2,6,6,10
chr2	115919677	.	C	G	2250.7	PASS	AC=2;AF=1;AN=2;DP=2686;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:2059,138,0:0,0,28,18
chr2	115919678	.	T	C	2250.7	PASS	AC=2;AF=1;AN=2;DP=2711;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:2059,138,0:0,0,28,18
chr2	116066984	.	G	A	1899.03	PASS	AC=2;AF=0.857;AN=2;DP=2023;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1420,117,0:0,0,8,31
chr2	116099725	.	A	T	4300.01	PASS	AC=2;AF=0.93;AN=2;DP=4811;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4017,384,0:0,0,47,81
chr2	116283668	.	G	A	681.29	PASS	AC=1;AF=0.567;AN=2;DP=1012;MQ=60;set=variant-variant5-variant8-variant11-variant16-variant20-variant22-variant29-variant31-variant33-variant34-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,34:58:99:967,0,667:6,18,11,23
chr2	116497479	.	A	G	2797.89	PASS	AC=2;AF=1;AN=2;DP=3446;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2988,272,0:0,0,27,64
chr2	116497528	.	A	G	1419.36	PASS	AC=2;AF=1;AN=2;DP=1510;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1161,93,0:0,0,4,27
chr2	116525960	.	G	A	3394.71	PASS	AC=2;AF=1;AN=2;DP=5503;FS=0;MQ=60;MQRankSum=0.66;ReadPosRankSum=0.561;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,133:133:99:3921,397,0:0,0,67,66
chr2	116534922	.	A	G	1492.84	PASS	AC=2;AF=0.618;AN=2;DP=1916;MQ=60;set=variant3-variant4-variant7-variant8-variant10-variant17-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2521,228,0:0,0,26,50
chr2	116535086	.	T	C	453.85	PASS	AC=2;AF=1;AN=2;DP=577;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:445,33,0:0,0,1,10
chr2	116539846	.	GA	G	348.25	PASS	AC=1;AF=0.583;AN=2;DP=520;MQ=60;set=variant3-variant7-variant8-variant10-variant17-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant35-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:422,0,317:9,4,12,4
chr2	116548526	.	A	G	509.76	PASS	AC=2;AF=0.919;AN=2;DP=605;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:718,57,0:0,0,17,2
chr2	116548820	.	C	T	2849.35	PASS	AC=2;AF=0.919;AN=2;DP=3525;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2575,243,0:0,0,31,50
chr2	116593675	.	ATG	A	438.21	PASS	AC=2;AF=0.925;AN=2;DP=457;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:276,24,0:0,0,5,3
chr2	116598546	.	G	A	461.7	PASS	AC=2;AF=0.977;AN=2;DP=627;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:695,57,0:0,0,5,14
chr2	116599659	.	A	T	1435.05	PASS	AC=2;AF=0.966;AN=2;DP=1738;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:95:1147,95,0:0,0,27,5
chr2	116599803	.	G	T	1529.84	PASS	AC=1;AF=0.5;AN=2;DP=151;FS=4.993;FractionInformativeReads=1;MQ=60;MQRankSum=1.511;QD=10.13;ReadPosRankSum=-2.542;SOR=1.113;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:88,63:151:99:1558,0,2541:48,40,40,23
chr2	116599927	.	T	C	11398.5	PASS	AC=2;AF=0.989;AN=2;DP=14420;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,292:292:99:9052,875,0:0,0,166,126
chr2	116601631	.	C	T	7122.02	PASS	AC=1;AF=0.731;AN=2;DP=7621;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,105:189:99:2594,0,2137:44,40,47,58
chr2	116602353	.	T	A	3823.16	PASS	AC=2;AF=1;AN=2;DP=5850;FS=0;MQ=60;MQRankSum=0.323;ReadPosRankSum=1.243;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4636,390,0:0,0,51,79
chr2	118572471	.	A	C,T	3108.6	PASS	AC=1,0;AF=0.643,0.014;AN=2;DP=9408;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:228:99:45,67,44,72
chr2	118578691	.	TA	T	284.1	PASS	AC=2;AF=0.898;AN=2;DP=1810;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1075,108,0:0,0,21,15
chr2	118582932	.	C	G	1319.4	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=0.761;FractionInformativeReads=0.99;MQ=60;MQRankSum=-1.075;QD=13.33;ReadPosRankSum=-1.104;SOR=0.813;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:44,54:98:99:1348,0,1012:24,20,31,23
chr2	118582936	.	A	ATAAAG	2531.88	PASS	AC=2;AF=0.898;AN=2;DP=5707;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:4272,290,0:0,0,50,42
chr2	118583940	.	C	T	669.38	PASS	AC=1;AF=0.662;AN=2;DP=2232;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,21:56:99:436,0,858:19,16,13,8
chr2	118588640	.	C	T	1931.52	PASS	AC=2;AF=0.898;AN=2;DP=5976;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:3195,275,0:0,0,28,64
chr2	118673164	.	T	C	1560.46	PASS	AC=1;AF=0.5;AN=2;DP=787;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant19-variant21-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,70:110:99:1805,0,922:22,18,40,30
chr2	118673663	.	T	C	11096.6	PASS	AC=1;AF=0.667;AN=2;DP=7370;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:112,94:206:99:2565,0,3382:55,57,43,51
chr2	118673912	.	TA	T	9730.96	PASS	AC=1;AF=0.672;AN=2;DP=7763;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant30-variant31-variant33-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:117,140:257:99:3111,0,2493:53,64,64,76
chr2	118674716	.	G	GATC	4869.86	PASS	AC=1;AF=0.667;AN=2;DP=2631;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:1484,0,2261:28,23,20,19
chr2	118675578	.	C	T	1721.22	PASS	AC=1;AF=0.667;AN=2;DP=1284;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:521,0,571:11,11,11,8
chr2	118675743	.	G	A	1964.61	PASS	AC=1;AF=0.667;AN=2;DP=1357;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:684,0,589:12,9,12,10
chr2	118676836	.	T	C	1532.02	PASS	AC=1;AF=0.667;AN=2;DP=1132;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant30-variant31-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,27:44:99:708,0,470:9,8,17,10
chr2	118677256	.	A	AAAATT	449.65	PASS	AC=1;AF=0.5;AN=2;DP=215;MQ=60;set=variant8-variant9-variant19-variant21-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:414,0,573:2,7,3,7
chr2	118677841	.	GA	G	2439.58	PASS	AC=1;AF=0.5;AN=2;DP=1199;MQ=60;set=variant8-variant9-variant19-variant21-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,64:140:99:1969,0,2415:44,32,34,30
chr2	118688754	.	T	C	2379.45	PASS	AC=2;AF=0.989;AN=2;DP=2728;MQ=60;MQRankSum=0.12;ReadPosRankSum=2.065;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1817,168,0:0,0,22,34
chr2	118698676	.	T	C	394.47	PASS	AC=1;AF=0.5;AN=2;DP=179;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant19-variant21-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:346,0,417:10,2,9,3
chr2	118701699	.	G	A	813.02	PASS	AC=1;AF=0.5;AN=2;DP=545;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant19-variant21-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:1097,0,957:19,23,19,21
chr2	118701764	.	C	T	853.75	PASS	AC=1;AF=0.542;AN=2;DP=533;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant9-variant11-variant12-variant19-variant21-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:739,0,597:9,14,11,17
chr2	118704478	.	T	G	2182.25	PASS	AC=2;AF=1;AN=2;DP=2211;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1919,159,0:0,0,15,38
chr2	118704503	.	A	G	1391.48	PASS	AC=2;AF=0.763;AN=2;DP=1360;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1441,111,0:0,0,8,29
chr2	118705570	.	A	G	2569.3	PASS	AC=2;AF=0.989;AN=2;DP=3110;MQRankSum=0.542;ReadPosRankSum=1.075;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2789,282,0:0,0,59,35
chr2	118706879	.	A	G	2778.79	PASS	AC=2;AF=0.989;AN=2;DP=3528;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2219,225,0:0,0,41,34
chr2	118731573	.	G	A	2247.44	PASS	AC=1;AF=0.706;AN=2;DP=3780;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,37:79:99:967,0,1010:22,20,19,18
chr2	118732975	.	T	C	1455.63	PASS	AC=2;AF=0.989;AN=2;DP=3368;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2506,236,0:0,0,33,46
chr2	118735395	.	G	A	944.04	PASS	AC=2;AF=0.989;AN=2;DP=1147;FS=0;MQ=60;MQRankSum=0.228;ReadPosRankSum=-0.152;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:89:976,89,0:0,0,23,7
chr2	118753148	.	A	ATC	1078.68	PASS	AC=2;AF=0.989;AN=2;DP=1836;MQ=60;MQRankSum=0.716;ReadPosRankSum=-1.273;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:2156,147,0:0,0,15,34
chr2	118764242	.	C	CA	3387.83	PASS	AC=1;AF=0.682;AN=2;DP=2603;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:44,39:83:99:1204,0,1399:23,21,23,16
chr2	118766024	.	A	G	1620.32	PASS	AC=2;AF=0.989;AN=2;DP=2035;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1836,150,0:0,0,39,11
chr2	118771663	.	A	G	4128.67	PASS	AC=2;AF=0.989;AN=2;DP=6324;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,130:130:99:4046,389,0:0,0,56,74
chr2	118771682	.	TGCCGCCGCC	TGCCGCC,T,TGCC	2400.9	PASS	AC=0,1,0;AF=0.26,0.12,0.24;AN=2;DP=3189;set=variant3-variant6-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant30-variant31-variant33-variant37-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:85:99:18,18,21,28
chr2	118850469	.	G	A	548.9	PASS	AC=1;AF=0.5;AN=2;DP=1284;set=variant-variant10-variant13-variant15-variant18-variant27-variant31-variant32-variant34-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,46:104:99:1192,0,1653:32,26,30,16
chr2	118850594	.	G	T	796.24	PASS	AC=1;AF=0.5;AN=2;DP=1838;set=variant-variant4-variant7-variant8-variant10-variant13-variant15-variant18-variant22-filterInvariant25-variant27-variant31-variant32-variant34-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,66:131:99:1695,0,1598:27,38,34,32
chr2	118850895	.	GAGGAGGAGAGTTCTGTAGCTACTGAACCTTGCCAAAAGCAACCAGATGATGATGATGATGATGATGATGATGA	G	154.03	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=1.69;FractionInformativeReads=0.933;MQ=33.73;MQRankSum=-1.195;QD=5.13;ReadPosRankSum=3.077;SOR=1.08;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,8:28:99:191,0,778:9,11,5,3
chr2	118851167	.	T	TGAG	717.8	PASS	AC=1;AF=0.75;AN=2;DP=42;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,14:19:89:708,0,89:5,0,10,4
chr2	118851809	.	AGAT	AGATGAT,AGATGATGAT,AGATGATGATGAT,AGATGATGATGATGAT,A	1256.93	PASS	AC=2,0,0,0,0;AF=0.663,0.188,0.025,0.013,0.013;AN=2;DP=3731;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:58:99:0,0,25,33
chr2	118854094	.	AT	ATT,A	999.98	PASS	AC=1,0;AF=0.375,0.156;AN=2;DP=1558;set=variant-variant8-variant10-variant13-variant15-variant18-variant19-variant21-variant27-variant31-variant32-variant34-variant37-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:81:99:25,16,25,15
chr2	118866033	.	G	GA	778.04	PASS	AC=1;AF=0.69;AN=2;DP=1668;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant13-variant14-variant15-variant17-variant19-variant23-variant24-variant25-variant27-variant28-variant29-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,23:48:99:707,0,791:11,14,8,15
chr2	118866963	.	C	T	7396.24	PASS	AC=2;AF=1;AN=2;DP=8655;FS=0;MQRankSum=0.871;ReadPosRankSum=0.38;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,194:194:99:6247,581,0:0,0,104,90
chr2	119599735	.	A	G	444.15	PASS	AC=2;AF=0.708;AN=2;DP=813;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:463,48,0:0,0,9,7
chr2	119600067	.	C	CT	639.55	PASS	AC=2;AF=0.869;AN=2;DP=566;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:634,54,0:0,0,7,11
chr2	119604255	.	C	T	1131.62	PASS	AC=1;AF=0.5;AN=2;DP=142;FractionInformativeReads=1;MQ=60;set=variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,31:62:99:757,0,743:18,13,16,15
chr2	119700096	.	T	C	1538.16	PASS	AC=2;AF=0.707;AN=2;DP=1862;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1619,131,0:0,0,7,37
chr2	119726932	.	C	A	108.15	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.566;QD=6.76;ReadPosRankSum=0.113;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:136,0,362:2,9,1,4
chr2	119729172	.	C	T	1795.34	PASS	AC=1;AF=0.5;AN=2;DP=127;FS=2.291;FractionInformativeReads=1;MQ=60;MQRankSum=-0.775;QD=14.14;ReadPosRankSum=-1.26;SOR=0.924;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,71:127:99:1824,0,1264:25,31,28,43
chr2	119734894	.	AAGAGAGAG	AAG,A	1233.69	PASS	AC=1,1;AF=0.5,0.071;AN=2;DP=462;MQ=60;set=variant2-variant7-variant10-variant26-variant29-variant41-variant43	GT:DP:GQ:SB	2/1:65:99:0,0,47,18
chr2	119735251	.	C	T	624.48	PASS	AC=2;AF=0.571;AN=2;DP=377;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant10-variant26-variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1451,141,0:0,0,25,22
chr2	119739063	.	T	C	139	PASS	AC=2;AF=0.571;AN=2;DP=226;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant10-variant26-variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:791,78,0:0,0,15,11
chr2	119739182	.	T	C	473.33	PASS	AC=2;AF=0.571;AN=2;DP=503;MQ=60;set=variant2-variant7-variant10-variant26-variant29-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2056,202,0:0,0,42,26
chr2	119739754	.	T	C	980.21	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0.896;FractionInformativeReads=1;MQ=60;MQRankSum=-2.133;QD=13.25;ReadPosRankSum=-3.4;SOR=0.534;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,35:74:99:1008,0,949:24,15,20,15
chr2	119748135	.	TC	T,TCC	2507.87	PASS	AC=2,0;AF=0.526,0.026;AN=2;DP=2518;MQ=60;set=variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant17-variant18-variant21-variant33-variant34-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:115:99:0,0,59,56
chr2	119749477	.	T	G	2231.23	PASS	AC=2;AF=0.872;AN=2;DP=7013;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:4989,479,0:0,0,71,89
chr2	119749542	.	G	A	1376.3	PASS	AC=1;AF=0.5;AN=2;DP=105;FS=2.635;FractionInformativeReads=1;MQ=60;MQRankSum=3.234;QD=13.11;ReadPosRankSum=2.643;SOR=1.018;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,56:105:99:1405,0,1143:20,29,19,37
chr2	119749858	.	A	G	125.14	PASS	AC=2;AF=0.688;AN=2;DP=390;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:389,27,0:0,0,9,0
chr2	119750882	.	T	C	738.47	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0.984;FractionInformativeReads=1;MQ=60;MQRankSum=-0.2;QD=11.19;ReadPosRankSum=-0.097;SOR=0.837;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,30:66:99:767,0,977:12,24,9,21
chr2	119751769	.	AAAC	A,AAACAAC	340.72	PASS	AC=1,0;AF=0.671,0.073;AN=2;DP=949;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:20:99:6,0,12,2
chr2	119751867	.	C	T	1097.34	PASS	AC=1;AF=0.5;AN=2;DP=930;MQ=60;set=variant2-variant4-variant15-variant17-variant21-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,48:97:99:1336,0,1194:29,20,33,15
chr2	119914101	.	T	G	1210.36	PASS	AC=1;AF=0.769;AN=2;DP=2408;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,42:86:99:1099,0,1132:24,20,22,20
chr2	119915132	.	CG	C	943.22	PASS	AC=2;AF=0.966;AN=2;DP=2073;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1372,126,0:0,0,31,11
chr2	119915249	.	T	C	793.2	PASS	AC=1;AF=0.805;AN=2;DP=6778;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,91:173:99:2102,0,1812:41,41,50,41
chr2	119915432	.	T	G	452.69	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.434;QD=9.43;ReadPosRankSum=-0.696;SOR=0.587;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,19:48:99:481,0,719:10,19,7,12
chr2	119915750	.	G	T	1376.55	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=0.676;FractionInformativeReads=1;MQ=60;MQRankSum=-0.903;QD=11.28;ReadPosRankSum=-0.795;SOR=0.591;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,57:122:99:1405,0,1640:29,36,27,30
chr2	119915988	.	A	G	492.14	PASS	AC=1;AF=0.805;AN=2;DP=1552;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,15:31:99:304,0,498:7,9,9,6
chr2	120003642	.	C	T	2091.06	PASS	AC=2;AF=0.909;AN=2;DP=3746;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:3050,270,0:0,0,40,50
chr2	120005173	.	C	T	573.81	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.264;QD=17.93;ReadPosRankSum=-1.133;SOR=0.826;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:602,0,549:14,1,16,1
chr2	120005312	.	G	A	2729.13	PASS	AC=2;AF=0.625;AN=2;DP=858;MQ=60;set=variant26-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:6468,616,0:0,0,117,89
chr2	120014985	.	A	G	331.77	PASS	AC=2;AF=1;AN=2;DP=998;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:841,63,0:0,0,18,3
chr2	120015197	.	A	T	1895.32	PASS	AC=2;AF=0.625;AN=2;DP=579;MQ=60;set=variant26-variant27-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:3486,324,0:0,0,51,57
chr2	120021785	.	T	C	1047.71	PASS	AC=2;AF=0.943;AN=2;DP=2393;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1593,159,0:0,0,21,32
chr2	120022390	.	G	C,GCC	1365.61	PASS	AC=0,2;AF=0.333,0.25;AN=2;DP=513;MQ=60;set=variant13-variant17-variant20-variant22-variant24-variant26-variant27-variant30-variant33-variant37-variant38-variant41	GT:DP:GQ:SB	2/2:29:85:0,0,3,26
chr2	120023188	.	A	G	5296.53	PASS	AC=2;AF=0.943;AN=2;DP=7004;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,165:165:99:5183,493,0:0,0,75,90
chr2	120059895	.	G	GGAAA	984.77	PASS	AC=2;AF=0.735;AN=2;DP=2559;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2730,184,0:0,0,37,22
chr2	120059988	.	T	C	1398.69	PASS	AC=2;AF=0.735;AN=2;DP=4140;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3012,312,0:0,0,55,49
chr2	120060082	.	T	C	926.72	PASS	AC=2;AF=0.735;AN=2;DP=2578;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2255,222,0:0,0,31,43
chr2	120069241	.	T	G	429.78	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=1.402;FractionInformativeReads=1;MQ=60;MQRankSum=0.52;QD=12.64;ReadPosRankSum=0.59;SOR=1.085;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:458,0,325:9,6,13,6
chr2	120069281	.	T	TA	451.74	PASS	AC=1;AF=0.5;AN=2;DP=429;MQ=60;set=variant5-variant6-variant10-variant14-variant26-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:612,0,663:21,11,15,12
chr2	120075164	.	G	A	369.59	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=3.037;FractionInformativeReads=1;MQ=60;MQRankSum=1.876;QD=11.2;ReadPosRankSum=0.82;SOR=0.321;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:398,0,510:7,12,7,7
chr2	120078731	.	A	G	509.88	PASS	AC=1;AF=0.5;AN=2;DP=89;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,25:51:99:601,0,646:16,10,16,9
chr2	120078778	.	T	C	990.43	PASS	AC=2;AF=0.735;AN=2;DP=2618;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,78:80:99:2096,190,0:1,1,44,34
chr2	120078951	.	T	C	285.59	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.18;QD=20.4;ReadPosRankSum=-0.778;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,11:14:95:314,0,95:0,3,2,9
chr2	120097851	.	A	G	142.88	PASS	AC=1;AF=0.639;AN=2;DP=2066;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:566,0,592:13,12,13,11
chr2	120125029	.	A	G	4838.05	PASS	AC=2;AF=0.841;AN=2;DP=6894;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5099,482,0:0,0,91,70
chr2	120125936	.	T	C	1156.15	PASS	AC=2;AF=0.83;AN=2;DP=3117;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2093,200,0:0,0,29,38
chr2	120125973	.	G	C	271.55	PASS	AC=1;AF=0.528;AN=2;DP=883;MQ=60;set=variant-variant3-variant4-variant7-variant9-variant13-variant15-variant17-variant19-variant20-variant23-variant25-variant29-variant31-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,16:44:99:372,0,691:12,16,6,10
chr2	120187344	.	A	G	77.3	PASS	AC=1;AF=0.705;AN=2;DP=923;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,13:30:99:369,0,493:12,5,11,2
chr2	120187770	.	G	A	893.08	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=0.997;FractionInformativeReads=1;MQ=60;MQRankSum=-0.812;QD=15.14;ReadPosRankSum=-1.131;SOR=0.507;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:921,0,695:16,12,16,15
chr2	120189404	.	A	G	538.86	PASS	AC=2;AF=0.864;AN=2;DP=643;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:337,36,0:0,0,6,6
chr2	120189433	.	G	C	787.34	PASS	AC=2;AF=0.864;AN=2;DP=838;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:437,45,0:0,0,8,7
chr2	120194651	.	A	AGTGTGC	5059.99	PASS	AC=2;AF=0.909;AN=2;DP=7932;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,175:175:99:7983,544,0:0,0,86,89
chr2	120195163	.	T	A	447.91	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=1.242;FractionInformativeReads=1;MQ=60;MQRankSum=1.192;QD=8.78;ReadPosRankSum=-0.719;SOR=0.439;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:33,18:51:99:476,0,960:9,24,6,12
chr2	120195182	.	C	G	1424.6	PASS	AC=2;AF=0.907;AN=2;DP=2282;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1582,129,0:0,0,15,28
chr2	120195426	.	C	T	516.39	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=1.053;FractionInformativeReads=0.982;MQ=60;MQRankSum=0.83;QD=9.06;ReadPosRankSum=-1.116;SOR=0.787;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,22:56:99:545,0,921:16,18,12,10
chr2	120195496	.	AGGACT	A	946.25	PASS	AC=1;AF=0.688;AN=2;DP=2388;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:1137,0,1046:16,11,16,13
chr2	120195699	.	T	TC	2469.1	PASS	AC=2;AF=0.917;AN=2;DP=2740;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2544,171,0:0,0,24,33
chr2	120195700	.	G	C,GC	2325.77	PASS	AC=2,0;AF=0.9,0.1;AN=2;DP=2261;FS=0;MQ=60;set=variant14-variant16-variant17-variant18-variant19-variant2-variant20-variant21-variant3-variant22-variant4-variant23-variant5-variant24-variant25-variant6-variant26-variant27-variant7-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:55:99:0,0,24,31
chr2	120196149	.	A	G	139.46	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:151,0,186:1,5,1,4
chr2	120197670	.	G	A	1068.44	PASS	AC=1;AF=0.675;AN=2;DP=4102;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,42:81:99:1188,0,1073:19,20,22,20
chr2	120199140	.	A	G	809.26	PASS	AC=2;AF=0.907;AN=2;DP=3535;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2003,213,0:0,0,33,38
chr2	120204211	.	C	G	511.02	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.296;QD=16.48;ReadPosRankSum=0.415;SOR=0.77;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:539,0,487:12,3,13,3
chr2	120209689	.	A	G	1841.72	PASS	AC=2;AF=0.907;AN=2;DP=5171;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:2558,258,0:0,0,34,52
chr2	120219287	.	CAAAAA	CAA,CA,CAAAA,CAAA,C	217.24	PASS	AC=0,0,2,0,0;AF=0.159,0.091,0.205,0.068,0.023;AN=2;DP=329;set=variant4-variant7-variant8-variant10-variant12-variant16-variant19-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43	GT:DP:GQ:SB	3/3:16:13:1,1,13,1
chr2	120221585	.	G	A	132.17	PASS	AC=1;AF=0.7;AN=2;DP=799;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:266,0,280:8,2,7,1
chr2	120221883	.	C	T	1175.3	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=4.584;FractionInformativeReads=1;MQ=60;MQRankSum=-1.65;QD=15.88;ReadPosRankSum=1.207;SOR=1.115;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,45:74:99:1204,0,666:15,14,18,27
chr2	120221984	.	A	C	463.53	PASS	AC=2;AF=0.919;AN=2;DP=886;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:667,51,0:0,0,3,14
chr2	120230998	.	G	A	1992.23	PASS	AC=2;AF=0.905;AN=2;DP=4184;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3135,301,0:0,0,65,36
chr2	120231165	.	T	C	5079.83	PASS	AC=1;AF=0.857;AN=2;DP=7499;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:99,78:177:99:1945,0,2420:45,54,35,43
chr2	120231303	.	T	C	1868.17	PASS	AC=2;AF=0.907;AN=2;DP=2534;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:2016,183,0:0,0,18,43
chr2	120317621	.	CTT	CT,CTTT,CTTTT,C	167.59	PASS	AC=0,0,0,1;AF=0.273,0.136,0.03,0.091;AN=2;DP=3278;set=filterInvariant-variant3-variant4-variant5-variant7-filterInvariant9-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant32-variant34-variant35-variant38-variant39-filterInvariant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/4:46:99:12,16,7,11
chr2	120344873	.	T	A	763.78	PASS	AC=2;AF=0.528;AN=2;DP=761;MQ=60;set=variant-variant5-variant7-variant12-variant13-variant16-variant20-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1227,108,0:0,0,9,27
chr2	120362407	.	C	T	3828.3	PASS	AC=2;AF=0.955;AN=2;DP=6083;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:4927,485,0:0,0,77,85
chr2	120362897	.	T	A	1126.92	PASS	AC=2;AF=1;AN=2;DP=1842;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1318,123,0:0,0,12,29
chr2	120366057	.	G	GT,GTT	384.45	PASS	AC=2,0;AF=0.875,0.045;AN=2;DP=1352;set=Intersection	GT:DP:GQ:SB	1/1:28:57:1,0,17,10
chr2	120369300	.	T	C	3021.8	PASS	AC=2;AF=1;AN=2;DP=4595;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2453,246,0:0,0,41,41
chr2	120383202	.	G	A	1281.22	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=1.548;FractionInformativeReads=0.991;MQ=60;MQRankSum=-0.516;QD=11.75;ReadPosRankSum=1.801;SOR=0.864;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,53:108:99:1309,0,1246:31,24,32,21
chr2	120385094	.	GATATATATAT	GATAT,GAT,GATATAT,G,GATATATAT	341.69	PASS	AC=1,1,0,0,0;AF=0.75,0.119,0.048,0.036,0.012;AN=2;DP=434;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:10:99:0,0,7,3
chr2	120387637	.	G	C	196.77	PASS	AC=2;AF=1;AN=2;DP=281;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:373,33,0:0,0,3,8
chr2	120388320	.	G	A	1926.49	PASS	AC=1;AF=0.5;AN=2;DP=355;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:97,91:188:99:2342,0,2578:52,45,44,47
chr2	120388412	.	G	A	6409.69	PASS	AC=2;AF=1;AN=2;DP=9098;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,219:219:99:7057,655,0:0,0,120,99
chr2	120395773	.	G	C	503.59	PASS	AC=1;AF=0.5;AN=2;DP=91;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,20:50:99:544,0,789:20,10,13,7
chr2	120404629	.	AT	A	1418.21	PASS	AC=2;AF=0.989;AN=2;DP=3871;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:3,61:64:99:1513,128,0:1,2,26,35
chr2	120409430	.	A	G	1281.35	PASS	AC=2;AF=1;AN=2;DP=1187;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1194,84,0:0,0,25,3
chr2	120409616	.	G	T	1792.56	PASS	AC=2;AF=0.531;AN=2;DP=2134;MQ=60;set=variant5-variant7-variant12-variant13-variant16-variant20-variant21-variant26-variant27-variant28-variant30-variant33-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:3778,385,0:0,0,51,78
chr2	120436681	.	A	G	909.24	PASS	AC=1;AF=0.966;AN=2;DP=1216;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:604,0,494:13,6,16,0
chr2	120436770	.	C	G	2565.66	PASS	AC=1;AF=0.5;AN=2;DP=193;FS=1.844;FractionInformativeReads=1;MQ=60;MQRankSum=-0.841;QD=13.29;ReadPosRankSum=-1.458;SOR=0.559;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:80,113:193:99:2594,0,1971:51,29,68,45
chr2	120438523	.	A	G	639.4	PASS	AC=2;AF=0.83;AN=2;DP=6262;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,148:148:99:4682,444,0:0,0,76,72
chr2	120438696	.	A	G	3178.22	PASS	AC=2;AF=1;AN=2;DP=8952;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,202:203:99:6342,576,0:1,0,109,93
chr2	120439230	.	C	G	627.88	PASS	AC=2;AF=0.83;AN=2;DP=5506;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3630,355,0:0,0,56,63
chr2	120439459	.	C	A	327.41	PASS	AC=2;AF=0.83;AN=2;DP=2499;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1785,162,0:0,0,25,29
chr2	120439702	.	G	GTTT,GTT,GT	89.9	PASS	AC=0,1,0;AF=0.154,0.481,0.212;AN=2;DP=268;set=variant2-variant3-variant4-variant6-variant8-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant33-variant34-variant35-variant37-variant40-variant41-variant42	GT:DP:GQ:SB	0/2:7:12:0,1,1,5
chr2	120443443	.	A	G	950.14	PASS	AC=1;AF=0.795;AN=2;DP=3437;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,25:50:99:737,0,721:12,13,9,16
chr2	120443665	.	T	C	621.83	PASS	AC=1;AF=0.818;AN=2;DP=2310;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:364,0,525:13,9,6,8
chr2	120517250	.	C	A	270.71	PASS	AC=1;AF=0.529;AN=2;DP=757;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant12-variant14-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:418,0,429:10,7,10,4
chr2	120643280	.	G	GT	132.06	PASS	AC=1;AF=0.528;AN=2;DP=226;MQ=60;set=variant2-variant4-variant6-variant7-variant12-variant14-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant28-variant29-variant31-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:160,0,316:9,3,6,1
chr2	120690217	.	G	A	1122.89	PASS	AC=1;AF=0.5;AN=2;DP=550;FractionInformativeReads=1;MQ=60;set=variant5-variant10-variant12-variant27-variant34-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,42:86:99:1145,0,1377:8,36,11,31
chr2	120703842	.	A	G	357.65	PASS	AC=1;AF=0.813;AN=2;DP=398;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:75:75,0,80:2,1,2,0
chr2	120718672	.	T	G	737.45	PASS	AC=1;AF=0.966;AN=2;DP=501;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:6,7:13:99:222,0,231:0,6,1,6
chr2	120725704	.	A	G	406.13	PASS	AC=2;AF=0.989;AN=2;DP=433;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.406;ReadPosRankSum=0.406;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:466,33,0:0,0,0,11
chr2	120734737	.	C	CA	2053.18	PASS	AC=1;AF=0.575;AN=2;DP=3458;MQ=60;set=variant2-variant4-variant6-variant7-variant12-variant14-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,68:134:99:1527,0,1456:41,25,43,25
chr2	120736007	.	GT	G	994.36	PASS	AC=1;AF=0.966;AN=2;DP=1701;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:17,7:24:99:146,0,451:8,9,3,4
chr2	120736882	.	T	C	5755.12	PASS	AC=1;AF=0.579;AN=2;DP=9104;MQ=60;set=variant2-variant4-variant6-variant7-variant12-variant14-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:247,182:429:99:4295,0,6385:122,125,92,90
chr2	120737825	.	C	A	3192.13	PASS	AC=1;AF=0.525;AN=2;DP=6565;MQ=60;set=variant2-variant4-variant6-variant7-variant12-variant14-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant31-variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:143,143:286:99:3891,0,3659:66,77,57,86
chr2	120738504	.	G	A	4090.52	PASS	AC=1;AF=0.977;AN=2;DP=4816;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,65:118:99:1804,0,1321:25,28,28,37
chr2	120740051	.	C	CTA	5160.65	PASS	AC=2;AF=1;AN=2;DP=5392;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,117:117:99:5268,355,0:0,0,64,53
chr2	120770633	.	T	C	2008.38	PASS	AC=2;AF=1;AN=2;DP=2798;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2023,212,0:0,0,38,33
chr2	120770708	.	A	C	2202.53	PASS	AC=1;AF=0.821;AN=2;DP=3227;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,46:82:99:1074,0,799:17,19,23,23
chr2	120776972	.	TG	T	1195.13	PASS	AC=1;AF=0.833;AN=2;DP=980;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:397,0,525:1,14,1,11
chr2	120830815	.	A	G	1029.62	PASS	AC=1;AF=0.833;AN=2;DP=1519;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,28:52:99:644,0,581:8,16,12,16
chr2	120862453	.	G	T	2800.04	PASS	AC=1;AF=0.798;AN=2;DP=3483;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,29:77:99:772,0,1389:34,14,24,5
chr2	120885310	.	G	A	4044.94	PASS	AC=1;AF=0.798;AN=2;DP=5069;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,54:115:99:1288,0,1384:33,28,29,25
chr2	120889173	.	G	C	2117.49	PASS	AC=1;AF=0.798;AN=2;DP=4560;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,51:86:99:1283,0,970:22,13,30,21
chr2	120918585	.	A	C	1792.76	PASS	AC=1;AF=0.798;AN=2;DP=2449;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,17:55:99:454,0,1033:13,25,4,13
chr2	120979322	.	T	C	1944.98	PASS	AC=1;AF=0.814;AN=2;DP=3338;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:852,0,891:18,18,17,19
chr2	120980428	.	G	C	5435.95	PASS	AC=1;AF=0.744;AN=2;DP=8224;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,77:175:99:1957,0,2637:46,52,33,44
chr2	120997867	.	T	A	483.78	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=1.508;FractionInformativeReads=1;MQ=60;MQRankSum=0.747;QD=14.66;ReadPosRankSum=0.856;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:512,0,395:5,9,5,14
chr2	120997869	.	A	T	175.94	PASS	AC=2;AF=0.556;AN=2;DP=1178;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:96:1287,96,0:0,0,10,21
chr2	121010443	.	A	T	2301.4	PASS	AC=2;AF=0.89;AN=2;DP=3034;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1590,164,0:0,0,25,30
chr2	121036385	.	T	G	728.03	PASS	AC=2;AF=0.878;AN=2;DP=1708;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1341,90,0:0,0,7,23
chr2	121036386	.	T	A	728.03	PASS	AC=2;AF=0.878;AN=2;DP=1673;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:90:1341,90,0:0,0,7,22
chr2	121038290	.	GA	G	692.39	PASS	AC=2;AF=0.85;AN=2;DP=1017;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:686,78,0:0,0,18,8
chr2	121038558	.	G	GT	144.11	PASS	AC=1;AF=0.5;AN=2;DP=254;MQ=60;set=variant4-variant11-variant13-variant17-variant18-variant20-variant23-filterInvariant28-variant31-variant32-variant34-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:193,0,111:1,4,2,6
chr2	121043403	.	G	A	932.48	PASS	AC=2;AF=0.89;AN=2;DP=931;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:858,69,0:0,0,20,3
chr2	121050989	.	T	A	4768.32	PASS	AC=2;AF=0.89;AN=2;DP=5195;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,112:112:99:3866,336,0:0,0,65,47
chr2	121052268	.	A	T	915.9	PASS	AC=2;AF=0.9;AN=2;DP=830;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:786,66,0:0,0,5,17
chr2	121052324	.	G	T	176.42	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;set=variant32-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:115,0,112:1,3,1,3
chr2	121103903	.	T	G	426.39	PASS	AC=1;AF=0.5;AN=2;DP=491;MQ=60;set=variant5-variant10-variant14-variant23-variant26-variant31-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,20:56:99:401,0,914:23,13,11,9
chr2	121108974	.	CAA	CA,C,CAAA	110.07	PASS	AC=1,0,0;AF=0.458,0.028,0.028;AN=2;DP=1706;set=variant-variant2-variant3-variant4-variant5-filterInvariant9-variant10-variant11-variant12-filterInvariant13-variant14-filterInvariant15-filterInvariant16-filterInvariant17-variant20-variant21-variant22-variant23-variant24-filterInvariant25-variant26-filterInvariant27-variant28-filterInvariant29-variant30-filterInvariant31-variant32-filterInvariant34-filterInvariant36-filterInvariant37-variant38-filterInvariant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:51:99:13,14,10,14
chr2	121223274	.	C	T	2468.18	PASS	AC=1;AF=0.5;AN=2;DP=929;FractionInformativeReads=1;MQ=60;set=variant14-variant16-variant31-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:80,75:155:99:1661,0,1983:40,40,41,34
chr2	121549800	.	A	C	151.77	PASS	AC=2;AF=1;AN=2;DP=212;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:166,12,0:0,0,4,0
chr2	121554750	.	A	G	261.64	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=2.197;FractionInformativeReads=1;MQ=60;MQRankSum=-0.533;QD=12.46;ReadPosRankSum=-0.107;SOR=1.445;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,9:21:99:290,0,370:9,3,8,1
chr2	121684663	.	C	G	1370.12	PASS	AC=1;AF=0.953;AN=2;DP=1743;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,20:37:99:539,0,405:10,7,12,8
chr2	121708663	.	A	G	1570.95	PASS	AC=1;AF=0.898;AN=2;DP=1847;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:738,0,817:22,1,19,3
chr2	121712729	.	C	T	444.24	PASS	AC=1;AF=0.725;AN=2;DP=494;set=variant-filterInvariant4-variant6-variant8-variant9-variant11-variant13-filterInvariant16-variant22-variant25-variant26-variant27-variant28-variant30-variant33-variant36-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,11:17:99:307,0,133:6,0,10,1
chr2	121713022	.	C	G	2520.55	PASS	AC=2;AF=1;AN=2;DP=2861;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2758,207,0:0,0,20,49
chr2	121713030	.	G	A	2385.95	PASS	AC=1;AF=0.898;AN=2;DP=2385;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,34:53:99:1021,0,600:4,15,10,24
chr2	121713041	.	T	C	1605.81	PASS	AC=1;AF=0.898;AN=2;DP=1878;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:14,27:41:99:908,0,434:2,12,5,22
chr2	121726447	.	G	A	6330.34	PASS	AC=1;AF=0.932;AN=2;DP=14278;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:149,149:298:99:3630,0,3518:67,82,64,85
chr2	121729323	.	A	G	966.63	PASS	AC=1;AF=0.886;AN=2;DP=1222;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:11,16:27:99:496,0,367:11,0,13,3
chr2	121729360	.	T	C	1356.63	PASS	AC=2;AF=0.943;AN=2;DP=2305;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1617,140,0:0,0,36,11
chr2	121729490	.	C	T	4378.78	PASS	AC=2;AF=0.943;AN=2;DP=8641;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:4978,500,0:0,0,86,81
chr2	121729686	.	T	C	1174.85	PASS	AC=2;AF=0.943;AN=2;DP=1770;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1621,150,0:0,0,15,35
chr2	121730138	.	C	G	2176.28	PASS	AC=2;AF=0.943;AN=2;DP=2805;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2273,201,0:0,0,46,21
chr2	121730391	.	C	T	1136.74	PASS	AC=1;AF=0.5;AN=2;DP=284;FractionInformativeReads=1;MQ=60;set=variant19-variant22-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,24:57:99:723,0,959:10,23,4,20
chr2	121740190	.	C	T	976.17	PASS	AC=2;AF=1;AN=2;DP=1258;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:90:1328,90,0:0,0,25,4
chr2	121740194	.	T	G	976.17	PASS	AC=2;AF=1;AN=2;DP=1353;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1328,90,0:0,0,26,4
chr2	121740505	.	C	T	507.89	PASS	AC=2;AF=0.898;AN=2;DP=3243;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2200,213,0:0,0,26,45
chr2	121744225	.	A	G	395.28	PASS	AC=1;AF=0.789;AN=2;DP=2295;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:857,0,745:15,18,12,21
chr2	121746956	.	G	T	1305.04	PASS	AC=1;AF=0.782;AN=2;DP=7926;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:96,95:191:99:2336,0,2322:50,46,41,54
chr2	121747406	.	G	A	1715.75	PASS	AC=1;AF=0.808;AN=2;DP=6464;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,76:153:99:1965,0,2101:36,41,32,44
chr2	121747429	.	A	G	1659.54	PASS	AC=1;AF=0.782;AN=2;DP=5869;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,61:135:99:1569,0,1938:34,40,26,35
chr2	121749067	.	G	C	854.1	PASS	AC=1;AF=0.782;AN=2;DP=2685;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,30:64:99:846,0,1039:15,19,15,15
chr2	121749583	.	TACACACACACACACACACAC	T,TACACACACACACACACACACACAC,TACACACACACACACACAC,TACACACACACACACACACACACACAC,TACACACACACACACACACACAC,TACACACACACACAC,TACACACACACACACACACACACACACAC,TACACACACAC	283.97	PASS	AC=0,0,0,1,0,0,0,1;AF=0.013,0.256,0.051,0.256,0.103,0.013,0.026,0.013;AN=2;DP=1053;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	8/4:16:99:0,0,6,10
chr2	121976066	.	C	A	1384.28	PASS	AC=1;AF=0.5;AN=2;DP=290;MQ=60;set=variant2-variant6-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,46:89:99:1298,0,1178:19,24,15,31
chr2	121976519	.	G	A	607.38	PASS	AC=1;AF=0.645;AN=2;DP=3125;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant21-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,38:77:99:956,0,1039:20,19,20,18
chr2	121976642	.	G	A	1158.49	PASS	AC=1;AF=0.667;AN=2;DP=4402;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,59:106:99:1467,0,1179:22,25,31,28
chr2	121976715	.	T	C	1443.46	PASS	AC=2;AF=0.977;AN=2;DP=4185;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2863,264,0:0,0,44,44
chr2	121977438	.	G	A	67.66	PASS	AC=1;AF=0.5;AN=2;DP=355;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:111,0,190:3,3,3,2
chr2	121977576	.	A	C	170.8	PASS	AC=1;AF=0.5;AN=2;DP=446;MQ=60;set=filterInvariant3-variant5-variant8-filterInvariant9-filterInvariant16-variant18-variant20-filterInvariant25-variant26-variant28-filterInvariant29-filterInvariant34-variant39-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:251,0,2990:2,18,12,0
chr2	121977582	.	G	C	160.76	PASS	AC=1;AF=0.5;AN=2;DP=477;MQ=60;set=variant3-variant5-variant8-variant9-variant12-variant16-variant18-variant20-filterInvariant25-variant26-variant28-variant29-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:248,0,3136:3,18,12,0
chr2	121977594	.	A	C	70.33	PASS	AC=1;AF=0.5;AN=2;DP=65;FractionInformativeReads=1;MQ=60;set=variant3-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,5:30:99:187,0,3543:5,20,5,0
chr2	121978976	.	TA	T	92.83	PASS	AC=2;AF=0.875;AN=2;DP=1009;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,19:21:15:449,15,0:1,1,9,10
chr2	121979217	.	G	C	3673.47	PASS	AC=2;AF=0.866;AN=2;DP=8068;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:7163,485,0:0,0,92,69
chr2	121979220	.	T	TACA	3703.38	PASS	AC=2;AF=0.866;AN=2;DP=8065;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:7215,484,0:0,0,88,69
chr2	121979534	.	TA	T	1414.89	PASS	AC=2;AF=0.854;AN=2;DP=5166;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,97:99:99:2686,247,0:1,1,42,55
chr2	121980405	.	TC	T	438.54	PASS	AC=2;AF=0.854;AN=2;DP=2264;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1731,141,0:0,0,26,21
chr2	121980465	.	C	T	537.89	PASS	AC=2;AF=0.854;AN=2;DP=2283;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1654,156,0:0,0,28,24
chr2	121980857	.	ATAGT	A	316.68	PASS	AC=1;AF=0.691;AN=2;DP=1333;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,16:42:99:594,0,1423:11,15,11,5
chr2	121981210	.	G	A	514.63	PASS	AC=1;AF=0.521;AN=2;DP=857;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,22:38:99:690,0,427:7,9,8,14
chr2	121981608	.	A	G	858.16	PASS	AC=1;AF=0.521;AN=2;DP=2040;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:53,47:100:99:1318,0,1149:27,26,19,28
chr2	121981950	.	A	G	1084.24	PASS	AC=1;AF=0.521;AN=2;DP=2380;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant12-variant15-variant16-variant17-variant21-variant25-variant27-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,44:83:99:1147,0,1088:23,16,23,21
chr2	121982011	.	T	A	691.27	PASS	AC=1;AF=0.697;AN=2;DP=3181;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,50:94:99:1266,0,945:19,25,26,24
chr2	121989489	.	G	A	629.34	PASS	AC=1;AF=0.697;AN=2;DP=4114;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,74:117:99:1808,0,1005:25,18,40,34
chr2	121997035	.	C	T	1364.6	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=3.695;FractionInformativeReads=1;MQ=60;MQRankSum=-0.381;QD=12.52;ReadPosRankSum=-1.227;SOR=0.392;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,60:109:99:1393,0,1256:33,16,35,25
chr2	122004596	.	C	G	642.87	PASS	AC=1;AF=0.7;AN=2;DP=1780;MQ=60;set=variant-variant2-variant3-variant8-variant10-variant11-variant12-variant13-variant16-variant17-variant21-variant25-variant27-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,44:73:99:1210,0,879:4,25,12,32
chr2	122006851	.	A	C	731.01	PASS	AC=1;AF=0.531;AN=2;DP=1088;MQ=60;set=variant9-variant10-variant11-variant12-variant16-variant17-variant21-variant23-variant27-variant31-variant33-variant35-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,34:65:99:882,0,721:10,21,10,24
chr2	122007378	.	A	C	527.38	PASS	AC=2;AF=0.708;AN=2;DP=1219;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:1025,84,0:0,0,3,25
chr2	122042750	.	A	T	5085.39	PASS	AC=1;AF=0.647;AN=2;DP=6337;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:94,87:181:99:1773,0,2068:39,55,36,51
chr2	122095325	.	G	C	2336.53	PASS	AC=1;AF=0.5;AN=2;DP=205;FS=4.848;FractionInformativeReads=1;MQ=60;MQRankSum=-2.087;QD=11.4;ReadPosRankSum=1.777;SOR=0.444;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:102,103:205:99:2365,0,2458:59,43,52,51
chr2	122095400	.	T	TTTG	5227.45	PASS	AC=1;AF=0.529;AN=2;DP=4334;set=variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant23-variant25-variant32-variant33-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:98,110:208:99:4042,0,3770:41,57,48,62
chr2	122095519	.	GCC	GC,G	1667.15	PASS	AC=2,0;AF=0.795,0.159;AN=2;DP=3348;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:78:99:0,0,38,40
chr2	122095640	.	C	T	181.94	PASS	AC=1;AF=0.5;AN=2;DP=389;FractionInformativeReads=1;MQ=60;set=variant10-variant11-variant12-variant15-variant17-variant18-variant23-variant25-variant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,18:48:99:481,0,896:13,17,5,13
chr2	122096018	.	C	A	891.59	PASS	AC=1;AF=0.525;AN=2;DP=1293;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant16-variant18-variant20-variant27-variant29-variant34-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:27,32:59:99:807,0,710:10,17,16,16
chr2	122096389	.	A	C	1592.68	PASS	AC=1;AF=0.5;AN=2;DP=147;FS=2.076;FractionInformativeReads=1;MQ=60;MQRankSum=-0.06;QD=10.83;ReadPosRankSum=-0.813;SOR=0.704;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:82,65:147:99:1621,0,2288:43,39,31,34
chr2	122096707	.	CCACACA	CCACA,CCACACACACACACA,CCACACACA,C,CCACACACACACACACACACA,CCA,CCACACACACA	117.32	PASS	AC=0,0,0,0,1,0,0;AF=0.175,0.05,0.175,0.05,0.05,0.025,0.075;AN=2;DP=356;set=variant4-variant9-variant11-variant12-variant14-variant17-variant19-variant21-variant22-variant26-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/5:10:99:3,3,1,3
chr2	122144705	.	A	T	1402.64	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.122;QD=12.52;ReadPosRankSum=-1.8;SOR=0.752;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,61:112:99:1431,0,1109:25,26,29,32
chr2	122160297	.	C	A	854.96	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=1.82;FractionInformativeReads=1;MQ=60;MQRankSum=-0.371;QD=23.75;ReadPosRankSum=1.218;SOR=1.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,26:36:99:883,0,219:3,7,5,21
chr2	122227839	.	C	T	312.38	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.76;QD=15.62;ReadPosRankSum=0.228;SOR=0.721;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:341,0,222:4,5,6,5
chr2	122283554	.	C	T	121.44	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.307;QD=13.49;ReadPosRankSum=0.361;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:99:150,0,160:1,4,0,4
chr2	122485435	.	C	T	594.94	PASS	AC=1;AF=0.5;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant2-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,16:51:99:348,0,804:20,15,11,5
chr2	125192068	.	T	C	1123.38	PASS	AC=2;AF=0.932;AN=2;DP=5498;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:3873,387,0:0,0,67,62
chr2	125232609	.	G	T	801.34	PASS	AC=2;AF=0.875;AN=2;DP=3455;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2335,207,0:0,0,19,50
chr2	125405302	.	C	T	1123.53	PASS	AC=1;AF=0.686;AN=2;DP=5215;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,53:112:99:1335,0,1506:36,23,34,19
chr2	125669260	.	A	G	548.54	PASS	AC=1;AF=0.682;AN=2;DP=536;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant26-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:159,0,320:1,8,0,5
chr2	125671918	.	C	T	705.81	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=0;FractionInformativeReads=0.985;MQ=60;MQRankSum=-1.171;QD=10.38;ReadPosRankSum=-0.804;SOR=0.658;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:38,29:67:99:734,0,1094:18,20,14,15
chr2	127413616	.	G	A	667.41	PASS	AC=2;AF=0.692;AN=2;DP=1683;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-filterInvariant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,17:19:3:370,3,0:1,1,9,8
chr2	127414309	.	T	C	577.85	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=0.953;FractionInformativeReads=1;MQ=60;MQRankSum=0.521;QD=9.03;ReadPosRankSum=0.589;SOR=0.869;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:606,0,821:17,19,12,16
chr2	127447763	.	G	A	732.66	PASS	AC=1;AF=0.662;AN=2;DP=2397;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,18:51:99:392,0,851:18,15,12,6
chr2	127453664	.	A	C	1395.74	PASS	AC=1;AF=0.662;AN=2;DP=5943;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,70:125:99:1805,0,1362:31,24,42,28
chr2	127454100	.	C	G	275.82	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.169;QD=11.03;ReadPosRankSum=-0.462;SOR=0.551;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:304,0,302:5,7,6,7
chr2	127656383	.	A	G	205.39	PASS	AC=1;AF=0.5;AN=2;DP=323;MQ=60;set=variant2-variant4-variant5-variant9-variant14-variant27-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:512,0,351:10,5,14,5
chr2	127657221	.	C	T	1009.57	PASS	AC=1;AF=0.814;AN=2;DP=1351;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,26:42:99:808,0,491:10,6,13,13
chr2	127807941	.	C	T	529.76	PASS	AC=1;AF=0.556;AN=2;DP=751;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant15-variant19-variant20-variant31-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,49:83:99:1442,0,985:26,8,35,14
chr2	127808161	.	G	A	1599.28	PASS	AC=1;AF=0.556;AN=2;DP=1536;MQ=60;set=variant-variant2-variant15-variant19-variant20-variant31-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,86:168:99:3162,0,4129:31,51,35,51
chr2	127808170	.	G	A	1556.7	PASS	AC=1;AF=0.556;AN=2;DP=1421;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant15-variant19-variant20-variant31-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,75:149:99:2912,0,4038:28,46,28,47
chr2	127811707	.	C	T	380.53	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.361;QD=8.27;ReadPosRankSum=-0.58;SOR=0.686;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,19:46:99:409,0,652:10,17,7,12
chr2	127816743	.	G	T	1124.46	PASS	AC=1;AF=0.556;AN=2;DP=1233;MQ=60;set=variant-variant2-variant15-variant19-variant20-variant31-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,54:123:99:1013,0,1599:30,39,25,29
chr2	127816846	.	CTGTG	CTG,CTGTGTG,C	262.77	PASS	AC=1,0,0;AF=0.672,0.016,0.016;AN=2;DP=950;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:18:99:3,4,4,7
chr2	127818406	.	G	A	78.36	PASS	AC=1;AF=0.556;AN=2;DP=175;MQ=60;set=variant-variant15-variant19-variant20-variant31-variant34-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:251,0,383:3,9,1,7
chr2	127826533	.	A	G	851.04	PASS	AC=1;AF=0.604;AN=2;DP=2412;MQ=60;set=variant-variant4-variant7-variant9-variant13-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,46:98:99:1168,0,1297:22,30,25,21
chr2	127826632	.	A	G	571.04	PASS	AC=1;AF=0.559;AN=2;DP=797;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant8-variant9-variant10-variant12-variant13-variant15-variant19-variant20-variant21-variant31-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,31:57:99:828,0,637:10,16,12,19
chr2	127864921	.	C	G	172.53	PASS	AC=1;AF=0.594;AN=2;DP=374;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant13-variant15-variant17-variant19-variant21-variant24-variant27-variant29-variant30-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:589,0,877:8,11,7,9
chr2	127864922	.	G	C	172.53	PASS	AC=1;AF=0.594;AN=2;DP=370;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant13-variant15-variant17-variant19-variant21-variant24-variant27-variant29-variant30-variant32-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:589,0,877:8,11,6,9
chr2	127941798	.	T	C	4502.86	PASS	AC=2;AF=0.688;AN=2;DP=8738;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,239:239:99:7332,716,0:0,0,103,136
chr2	127941973	.	G	GT	1493.79	PASS	AC=1;AF=0.5;AN=2;DP=199;FS=4.558;FractionInformativeReads=0.844;MQ=60;MQRankSum=-1.432;QD=7.51;ReadPosRankSum=-2.694;SOR=1.037;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:92,76:168:99:1531,0,2085:42,50,29,47
chr2	127942231	.	G	A	380.65	PASS	AC=1;AF=0.607;AN=2;DP=705;FractionInformativeReads=1;set=variant-variant3-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant27-variant30-variant31-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,7:17:99:217,0,271:6,4,5,2
chr2	127942334	.	C	T	907.59	PASS	AC=2;AF=0.688;AN=2;DP=1719;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:865,90,0:0,0,13,17
chr2	127943821	.	TTTATTTATTTA	T	1318.52	PASS	AC=1;AF=0.5;AN=2;DP=113;FS=1.555;FractionInformativeReads=0.398;MQ=60;MQRankSum=-2.047;QD=11.67;ReadPosRankSum=1.915;SOR=0.382;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,34:45:99:1356,0,889:2,9,10,24
chr2	127943945	.	CATTTTATTTTATTTT	CATTTTATTTTATTTTATTTT,C	52.26	PASS	AC=0,1;AF=0.8,0.1;AN=2;DP=23;FS=0;MQ=60;MQRankSum=0.727;ReadPosRankSum=0.727;set=variant-variant5-variant9-variant33-variant41	GT:DP:GQ:SB	0/2:4:98:1,0,0,3
chr2	127944781	.	A	AC	2858.62	PASS	AC=2;AF=0.738;AN=2;DP=3507;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:2095,156,0:0,0,24,28
chr2	127945023	.	C	G	653.02	PASS	AC=1;AF=0.5;AN=2;DP=463;MQ=60;set=variant7-variant8-variant17-variant19-variant21-variant29-variant32-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,25:54:99:482,0,722:12,17,11,14
chr2	127953054	.	A	C	1292.34	PASS	AC=2;AF=0.538;AN=2;DP=3319;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant15-variant17-variant18-variant19-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,113:113:99:3661,338,0:0,0,34,79
chr2	127963096	.	G	A	1103.87	PASS	AC=1;AF=0.5;AN=2;DP=89;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.267;QD=12.4;ReadPosRankSum=0.669;SOR=0.756;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,44:89:99:1132,0,1107:29,16,29,15
chr2	127977550	.	G	C,A	3539.37	PASS	AC=0,1;AF=0.629,0.016;AN=2;DP=3841;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	0/2:82:99:26,18,25,13
chr2	128015367	.	C	T	557.97	PASS	AC=2;AF=0.866;AN=2;DP=815;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:632,48,0:0,0,3,13
chr2	128028792	.	T	C	1841.95	PASS	AC=2;AF=0.857;AN=2;DP=2959;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2061,191,0:0,0,43,21
chr2	128029065	.	GA	G	481.39	PASS	AC=1;AF=0.536;AN=2;DP=1035;MQ=60;set=variant2-variant3-filterInvariant5-variant7-variant8-variant9-variant11-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant25-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,26:39:99:616,0,248:4,9,9,17
chr2	128030377	.	T	C	532.23	PASS	AC=1;AF=0.5;AN=2;DP=349;FractionInformativeReads=1;MQ=60;set=variant5-variant17-variant19-variant28-variant32-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,17:42:99:455,0,786:19,6,12,5
chr2	128047670	.	TTTCTC	T	1170.63	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=3.064;FractionInformativeReads=0.962;MQ=60;MQRankSum=-1.055;QD=15.01;ReadPosRankSum=-0.702;SOR=1.053;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,32:75:99:1208,0,2796:22,21,19,13
chr2	128050000	.	A	G	341.84	PASS	AC=2;AF=0.897;AN=2;DP=232;set=variant3-variant5-variant6-variant7-variant8-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:459,36,0:0,0,10,2
chr2	128050134	.	T	C	1436.56	PASS	AC=2;AF=0.857;AN=2;DP=2382;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1520,138,0:0,0,27,19
chr2	128050483	.	T	C	817.03	PASS	AC=1;AF=0.5;AN=2;DP=346;FractionInformativeReads=1;MQ=60;set=variant5-variant17-variant19-variant28-variant32-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:14,30:44:99:795,0,299:5,9,11,19
chr2	128056530	.	A	T	1058.32	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0.813;FractionInformativeReads=1;MQ=60;MQRankSum=0.136;QD=12.45;ReadPosRankSum=1.261;SOR=0.656;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:1087,0,1086:20,22,22,21
chr2	128057560	.	C	CAG	10013.1	PASS	AC=2;AF=0.932;AN=2;DP=9486;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:7156,487,0:0,0,76,84
chr2	128058627	.	C	T	1927.67	PASS	AC=1;AF=0.5;AN=2;DP=1232;MQ=60;set=variant5-variant17-variant19-variant28-variant32-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:68,86:154:99:2242,0,1635:38,30,50,36
chr2	128059258	.	T	A	4015.67	PASS	AC=1;AF=0.5;AN=2;DP=313;FS=1.342;FractionInformativeReads=0.994;MQ=60;MQRankSum=5.317;QD=12.83;ReadPosRankSum=2.408;SOR=0.66;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:157,154:311:99:4044,0,3975:81,76,76,78
chr2	128059746	.	T	C	1033.8	PASS	AC=1;AF=0.5;AN=2;DP=494;FractionInformativeReads=1;MQ=60;set=variant5-variant17-variant19-variant28-variant32-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,39:58:99:1262,0,514:11,8,16,23
chr2	128060017	.	CCA	C	1937.9	PASS	AC=2;AF=0.775;AN=2;DP=2449;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,65:65:99:2296,196,0:0,0,40,25
chr2	128062048	.	T	C	5176.68	PASS	AC=1;AF=0.704;AN=2;DP=4019;MQ=60;set=variant-variant3-variant5-variant7-variant9-variant12-variant14-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant26-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,79:154:99:2113,0,1856:35,40,42,37
chr2	128063506	.	CTT	C,CT	2140.69	PASS	AC=1,1;AF=0.25,0.5;AN=2;DP=7424;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:156:99:21,4,64,67
chr2	128063697	.	G	A	4835.71	PASS	AC=1;AF=0.5;AN=2;DP=3588;MQ=60;set=variant5-variant17-variant19-variant28-variant32-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:236,207:443:99:4737,0,5947:107,129,99,108
chr2	128063945	.	T	C	1998.93	PASS	AC=2;AF=0.869;AN=2;DP=2134;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2495,210,0:0,0,37,33
chr2	128064423	.	CGTGTGT	C,CGT,CGTGT,CGTGTGTGTGTGT	7846.14	PASS	AC=1,0,1,0;AF=0.239,0.284,0.307,0.011;AN=2;DP=9545;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:143:99:1,0,76,66
chr2	128065066	.	C	CT	61.6	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=10.395;FractionInformativeReads=1;MQ=60;MQRankSum=-0.252;QD=2.2;ReadPosRankSum=0.252;SOR=0.039;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,6:28:99:99,0,583:19,3,3,3
chr2	128093503	.	T	G	851.46	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.812;QD=14.43;ReadPosRankSum=1.632;SOR=0.569;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:880,0,729:9,19,11,20
chr2	128145800	.	TCC	T	198.26	PASS	AC=1;AF=0.5;AN=2;DP=138;MQ=60;set=variant5-variant17-variant19-variant28-variant32-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,1163:4,2,3,1
chr2	128145803	.	GTGTGCGCGGCGCATA	G	191.73	PASS	AC=1;AF=0.5;AN=2;DP=147;FractionInformativeReads=1;MQ=60;set=variant5-variant17-variant19-variant28-variant32-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:6,4:10:99:150,0,1163:4,2,3,1
chr2	128146147	.	C	CAA	34.62	PASS	AC=1;AF=0.625;AN=2;DP=60;MQ=60;set=variant2-variant4-variant13-variant20-variant26-variant30-variant31-variant33-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:156,0,178:0,4,2,2
chr2	128176040	.	A	T	2459.89	PASS	AC=2;AF=0.593;AN=2;DP=5032;MQ=60;set=variant2-variant4-variant5-variant10-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,187:187:99:5680,560,0:0,0,81,106
chr2	128176195	.	G	A	261.53	PASS	AC=2;AF=1;AN=2;DP=761;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:849,63,0:0,0,3,18
chr2	128180872	.	G	T	3825.58	PASS	AC=1;AF=0.681;AN=2;DP=4030;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,56:113:99:1440,0,1513:35,22,35,21
chr2	128181028	.	A	G	5081.22	PASS	AC=2;AF=1;AN=2;DP=7875;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,180:180:99:5899,540,0:0,0,87,93
chr2	128181234	.	GC	G	2537.49	PASS	AC=1;AF=0.681;AN=2;DP=2747;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,27:52:99:717,0,657:12,13,11,16
chr2	128186060	.	C	T	2806.66	PASS	AC=1;AF=0.5;AN=2;DP=231;FS=4.503;FractionInformativeReads=1;MQ=60;MQRankSum=1.401;QD=12.15;ReadPosRankSum=1.606;SOR=0.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:110,121:231:99:2835,0,3001:66,44,65,56
chr2	128249441	.	C	T	106.65	PASS	AC=2;AF=0.932;AN=2;DP=565;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:486,39,0:0,0,11,2
chr2	128253784	.	T	C	654.35	PASS	AC=1;AF=0.5;AN=2;DP=238;FractionInformativeReads=1;MQ=60;set=variant5-variant18-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:684,0,554:9,12,8,18
chr2	128261245	.	AAAATAAAT	AAAAT,A	53.47	PASS	AC=0,2;AF=0.8,0.2;AN=2;DP=48;FS=0;MQ=60;set=variant22-variant26-variant31-variant39-variant41	GT:DP:GQ:SB	2/2:2:7:0,0,0,2
chr2	128264246	.	T	C	1213.72	PASS	AC=1;AF=0.5;AN=2;DP=505;FractionInformativeReads=1;MQ=60;set=variant5-variant18-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,44:83:99:1098,0,887:23,16,23,21
chr2	128264431	.	C	T	265.9	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant18-variant32-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:67:239,0,67:0,2,0,6
chr2	128271958	.	C	T	1065.9	PASS	AC=1;AF=0.645;AN=2;DP=3625;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant26-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,66:99:99:1676,0,840:8,25,25,41
chr2	128272020	.	C	T	983.78	PASS	AC=1;AF=0.5;AN=2;DP=294;MQ=60;set=variant5-variant18-variant32-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,18:47:99:506,0,751:10,19,4,14
chr2	128281469	.	C	T	304.32	PASS	AC=1;AF=0.718;AN=2;DP=1062;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,24:41:99:693,0,480:3,14,5,19
chr2	128283652	.	T	C	731.05	PASS	AC=1;AF=0.5;AN=2;DP=232;MQ=60;set=variant5-variant18-variant32-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,18:47:99:501,0,844:21,8,14,4
chr2	128284073	.	A	G	1984.86	PASS	AC=1;AF=0.5;AN=2;DP=534;MQ=60;set=variant5-variant18-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:64,53:117:99:1408,0,1719:22,42,19,34
chr2	128331645	.	C	A	994.84	PASS	AC=1;AF=0.5;AN=2;DP=360;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant20-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,48:77:99:1327,0,799:7,22,13,35
chr2	128339758	.	C	G	808.37	PASS	AC=2;AF=0.647;AN=2;DP=1017;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1421,111,0:0,0,14,23
chr2	128342547	.	G	A	424.5	PASS	AC=2;AF=0.92;AN=2;DP=2916;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2577,225,0:0,0,19,56
chr2	128346228	.	A	C	177.19	PASS	AC=2;AF=0.92;AN=2;DP=888;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1042,87,0:0,0,5,24
chr2	128350551	.	G	A	4438.84	PASS	AC=2;AF=0.647;AN=2;DP=6359;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:5065,478,0:0,0,53,107
chr2	128350578	.	T	TG	2037.52	PASS	AC=2;AF=0.989;AN=2;DP=4954;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:3376,286,0:0,0,21,73
chr2	128351346	.	T	C	72.46	PASS	AC=2;AF=0.671;AN=2;DP=714;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:919,81,0:0,0,7,20
chr2	128363530	.	G	GC	1662.15	PASS	AC=2;AF=1;AN=2;DP=1850;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1459,123,0:0,0,8,33
chr2	128369896	.	A	G	576.67	PASS	AC=2;AF=0.713;AN=2;DP=4281;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3436,312,0:0,0,58,46
chr2	128377833	.	C	G	1114.23	PASS	AC=2;AF=0.713;AN=2;DP=3979;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2996,251,0:0,0,48,36
chr2	128382859	.	C	T	157.25	PASS	AC=2;AF=0.7;AN=2;DP=727;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:56:599,56,0:0,0,14,5
chr2	128388437	.	A	C	1196.47	PASS	AC=1;AF=0.5;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant5-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:796,0,1060:21,20,16,21
chr2	128393261	.	T	C	1452.43	PASS	AC=2;AF=0.737;AN=2;DP=1964;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2113,203,0:0,0,45,23
chr2	128393800	.	T	C	4286.45	PASS	AC=1;AF=0.565;AN=2;DP=3720;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant14-variant17-variant18-variant20-variant21-variant25-variant28-variant29-variant33-variant34-variant35-variant36-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,78:150:99:1780,0,1690:37,35,40,38
chr2	128394758	.	T	C	3138.9	PASS	AC=1;AF=0.662;AN=2;DP=3821;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,57:100:99:1612,0,1213:22,21,30,27
chr2	128394877	.	C	CT,T	7926.36	PASS	AC=2,0;AF=0.237,0.5;AN=2;DP=7260;MQ=60;set=variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant3-variant4-variant33-variant2-variant13-variant34-variant35-variant6-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:196:99:0,0,112,84
chr2	128395138	.	G	A	1448.34	PASS	AC=1;AF=0.5;AN=2;DP=540;MQ=60;set=variant6-variant20-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:52,56:108:99:1406,0,1267:26,26,28,28
chr2	128396059	.	C	G	695.38	PASS	AC=1;AF=0.5;AN=2;DP=436;FractionInformativeReads=1;MQ=60;set=variant6-variant20-variant32-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,46:79:99:1120,0,778:17,16,23,23
chr2	128396807	.	A	G	1482.56	PASS	AC=1;AF=0.714;AN=2;DP=1634;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,29:45:99:939,0,542:11,5,16,13
chr2	128399414	.	G	A	141.16	PASS	AC=2;AF=0.6;AN=2;DP=159;FractionInformativeReads=1;MQ=60;set=variant6-variant10-variant19-variant20-variant24-variant25-variant27-variant30-variant32-variant34-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:395,30,0:0,0,9,1
chr2	128400783	.	G	A	1371.51	PASS	AC=2;AF=0.708;AN=2;DP=1780;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1072,109,0:0,0,18,19
chr2	128400992	.	A	G	367.23	PASS	AC=1;AF=0.5;AN=2;DP=557;MQ=60;set=variant6-variant8-variant19-variant24-variant30-variant31-variant32-variant34-variant36-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:25,17:42:99:429,0,758:18,7,12,5
chr2	128401091	.	A	G	2519.28	PASS	AC=2;AF=0.731;AN=2;DP=2962;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2533,252,0:0,0,46,38
chr2	128405921	.	C	T	171.18	PASS	AC=1;AF=0.5;AN=2;DP=60;FS=0;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant11-variant25-variant32-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:98:98,0,240:2,5,0,3
chr2	128407499	.	G	A	1458.29	PASS	AC=2;AF=0.727;AN=2;DP=1640;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1669,156,0:0,0,30,22
chr2	128408121	.	G	GC	2585.67	PASS	AC=2;AF=1;AN=2;DP=2766;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2290,172,0:0,0,36,21
chr2	128409337	.	G	C	1269.54	PASS	AC=1;AF=0.545;AN=2;DP=848;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant17-variant18-variant25-variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,39:91:99:1477,0,2710:23,29,19,20
chr2	128409338	.	C	A	1269.54	PASS	AC=1;AF=0.545;AN=2;DP=835;MQ=60;set=variant2-variant5-variant6-variant8-variant9-variant17-variant18-variant25-variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,41:92:99:1477,0,2710:22,29,20,21
chr2	128411934	.	A	G	630.86	PASS	AC=2;AF=0.919;AN=2;DP=1701;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1194,105,0:0,0,24,11
chr2	128411950	.	A	G	842.22	PASS	AC=2;AF=0.93;AN=2;DP=2123;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1324,117,0:0,0,26,13
chr2	128460956	.	G	A	1938.8	PASS	AC=2;AF=0.989;AN=2;DP=2154;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1718,150,0:0,0,20,30
chr2	128477084	.	G	C	1497.16	PASS	AC=2;AF=0.625;AN=2;DP=765;MQ=60;set=variant6-variant8-variant9-variant11-variant20-variant25-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2220,222,0:0,0,37,37
chr2	128480973	.	G	A	1366.86	PASS	AC=2;AF=0.625;AN=2;DP=900;MQ=60;set=variant6-variant8-variant9-variant11-variant20-variant25-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:2863,272,0:0,0,34,57
chr2	128495645	.	G	A	2943.93	PASS	AC=2;AF=0.742;AN=2;DP=6479;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:2,215:217:99:6494,599,0:1,1,83,132
chr2	128520262	.	T	C	3642.61	PASS	AC=2;AF=0.625;AN=2;DP=2212;MQ=60;set=variant6-variant8-variant9-variant11-variant20-variant25-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,266:266:99:8115,796,0:0,0,113,153
chr2	128522207	.	C	T	972.82	PASS	AC=2;AF=0.625;AN=2;DP=789;MQ=60;set=variant6-variant8-variant9-variant11-variant20-variant25-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3079,332,0:0,0,60,51
chr2	128522383	.	T	C	1529.71	PASS	AC=2;AF=0.625;AN=2;DP=891;MQ=60;set=variant6-variant8-variant9-variant11-variant20-variant25-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3284,314,0:0,0,60,45
chr2	128526579	.	TTAAA	TTAAATAAATAAA,T,TTAAATAAA,TTAAATAAATAAATAAA	1479.08	PASS	AC=0,2,0,0;AF=0.122,0.256,0.476,0.024;AN=2;DP=5250;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	2/2:58:99:0,0,16,42
chr2	128605207	.	TA	T	596.38	PASS	AC=1;AF=0.5;AN=2;DP=3189;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,19:48:99:259,0,437:19,10,12,7
chr2	128608271	.	GAA	GA,G	888.45	PASS	AC=2,0;AF=0.764,0.014;AN=2;DP=824;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:22:66:0,0,7,15
chr2	128608290	.	T	C	842.46	PASS	AC=2;AF=0.786;AN=2;DP=673;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:741,51,0:0,0,6,11
chr2	128610648	.	T	C	1276.63	PASS	AC=2;AF=0.688;AN=2;DP=966;MQ=60;set=variant6-variant8-variant9-variant11-variant20-variant25-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:3453,302,0:0,0,46,55
chr2	128610747	.	G	A	1039.81	PASS	AC=2;AF=0.688;AN=2;DP=780;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant11-variant20-variant25-variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3248,305,0:0,0,47,55
chr2	128621094	.	A	G	679.24	PASS	AC=2;AF=0.676;AN=2;DP=2060;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1723,174,0:0,0,22,36
chr2	128622491	.	G	A	1078.15	PASS	AC=2;AF=0.676;AN=2;DP=1887;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1424,129,0:0,0,21,22
chr2	128642367	.	C	G	265.64	PASS	AC=2;AF=0.707;AN=2;DP=949;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:813,81,0:0,0,16,11
chr2	128708063	.	T	C	1578.42	PASS	AC=1;AF=0.989;AN=2;DP=3197;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,42:85:99:1073,0,1179:18,25,17,25
chr2	128735310	.	A	T	321.17	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.62;QD=24.71;ReadPosRankSum=0.077;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:349,0,127:4,0,8,1
chr2	128747023	.	A	G	66.47	PASS	AC=1;AF=0.5;AN=2;DP=88;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant12-variant13-variant25-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:106,0,245:6,1,3,1
chr2	128753854	.	T	C	1070.58	PASS	AC=1;AF=0.989;AN=2;DP=3077;MQ=60;MQRankSum=-1.667;ReadPosRankSum=-2.723;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:47,22:69:99:553,0,1333:32,15,12,10
chr2	128757995	.	A	C	643.39	PASS	AC=1;AF=0.5;AN=2;DP=489;MQ=60;set=variant2-variant11-variant12-variant13-variant25-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,25:53:99:685,0,791:10,18,10,15
chr2	128772310	.	C	T	715.06	PASS	AC=2;AF=0.588;AN=2;DP=1188;MQ=60;set=variant2-variant4-variant10-variant11-variant12-variant13-variant17-variant20-variant25-variant27-variant28-variant30-variant31-variant33-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2473,226,0:0,0,55,21
chr2	128848683	.	G	T	211.88	PASS	AC=2;AF=0.989;AN=2;DP=704;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:524,45,0:0,0,12,3
chr2	128849114	.	T	C	2024.75	PASS	AC=2;AF=0.989;AN=2;DP=4229;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,102:102:99:3333,306,0:0,0,44,58
chr2	128860835	.	A	G	1428.81	PASS	AC=2;AF=1;AN=2;DP=1834;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.075;ReadPosRankSum=1.657;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,45:46:97:1634,97,0:1,0,9,36
chr2	128870808	.	T	C	1467.55	PASS	AC=2;AF=0.989;AN=2;DP=1873;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.739;ReadPosRankSum=-0.512;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:1054,102,0:0,0,14,20
chr2	128874061	.	G	A	765.23	PASS	AC=2;AF=0.989;AN=2;DP=1182;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:995,78,0:0,0,5,21
chr2	128877837	.	G	C	335.14	PASS	AC=2;AF=0.989;AN=2;DP=429;FS=0;MQ=60;MQRankSum=1.683;ReadPosRankSum=-0.573;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:406,30,0:0,0,8,2
chr2	128878014	.	G	A	2138.88	PASS	AC=2;AF=0.989;AN=2;DP=3644;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2077,215,0:0,0,36,36
chr2	128878667	.	T	C	879.88	PASS	AC=2;AF=0.989;AN=2;DP=671;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:668,54,0:0,0,15,3
chr2	128878979	.	C	CT,CTT,CTTT	213.99	PASS	AC=1,1,0;AF=0.318,0.242,0.045;AN=2;DP=957;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant29-variant31-variant32-variant33-variant35-filterInvariant36-variant37-filterInvariant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/2:20:99:0,1,6,13
chr2	128879022	.	G	C	328.54	PASS	AC=2;AF=1;AN=2;DP=339;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:483,33,0:0,0,1,10
chr2	128880899	.	T	A	1307.4	PASS	AC=2;AF=0.989;AN=2;DP=1906;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1331,135,0:0,0,17,28
chr2	128880993	.	A	G	106.77	PASS	AC=2;AF=1;AN=2;DP=280;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:347,24,0:0,0,0,8
chr2	128890878	.	T	TG	2426.19	PASS	AC=2;AF=0.705;AN=2;DP=5407;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:5027,409,0:0,0,60,76
chr2	128934400	.	T	C	1550.41	PASS	AC=1;AF=0.595;AN=2;DP=4423;MQ=60;set=variant-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,45:97:99:1276,0,1327:28,24,20,25
chr2	128949840	.	GTT	GT,G	214.57	PASS	AC=1,0;AF=0.5,0.023;AN=2;DP=6387;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-filterInvariant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:127:99:46,41,20,20
chr2	129075961	.	T	C	1553.55	PASS	AC=1;AF=0.706;AN=2;DP=6027;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:123,67:190:99:1378,0,2793:51,72,35,32
chr2	130681407	.	G	C	331.77	PASS	AC=2;AF=0.756;AN=2;DP=971;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:1031,81,0:0,0,4,23
chr2	130681447	.	G	A	151.77	PASS	AC=2;AF=0.763;AN=2;DP=488;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:671,51,0:0,0,3,14
chr2	130737320	.	T	C	1876.91	PASS	AC=1;AF=0.5;AN=2;DP=694;FractionInformativeReads=1;set=variant6-variant9-variant23-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:92,64:156:99:1326,0,2257:43,49,33,31
chr2	130737541	.	C	T	181.69	PASS	AC=1;AF=0.697;AN=2;DP=1077;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,13:21:99:358,0,224:2,6,5,8
chr2	130737578	.	G	A	205.39	PASS	AC=1;AF=0.513;AN=2;DP=1964;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,15:29:99:416,0,335:8,6,6,9
chr2	130737955	.	T	A	1248.53	PASS	AC=1;AF=0.5;AN=2;DP=108;FS=0;FractionInformativeReads=1;MQ=41.46;MQRankSum=-0.997;QD=11.56;ReadPosRankSum=0.425;SOR=0.699;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,51:108:99:1277,0,1477:39,18,35,16
chr2	130738163	.	G	A	2318.4	PASS	AC=1;AF=0.697;AN=2;DP=7358;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,78:161:99:1717,0,2202:35,48,30,48
chr2	130750446	.	C	A	267.2	PASS	AC=1;AF=0.5;AN=2;DP=2319;FractionInformativeReads=1;set=variant-variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-variant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-variant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-variant20-variant21-filterInvariant22-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-filterInvariant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,8:40:99:103,0,750:15,17,2,6
chr2	130807680	.	A	G	100.44	PASS	AC=2;AF=0.958;AN=2;DP=80;FractionInformativeReads=1;MQRankSum=-3.595;ReadPosRankSum=1.241;set=filterInvariant2-filterInvariant3-variant4-filterInvariant19-variant21-filterInvariant25-variant32-filterInvariant33-variant35-filterInvariant39-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:258,27,0:0,0,3,6
chr2	130807780	.	G	C	94.81	PASS	AC=2;AF=1;AN=2;DP=6;FS=0;FractionInformativeReads=1;set=filterInvariant19-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:71,6,0:0,0,0,2
chr2	130832185	.	G	A	215.45	DRAGENHardSNP	AC=2;AF=0.989;AN=2;DP=2109;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1025,122,0:0,0,25,16
chr2	130832292	.	T	A	378.42	PASS	AC=2;AF=0.659;AN=2;DP=3655;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-variant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1061,125,0:0,0,15,27
chr2	130832358	.	T	C	139.27	DRAGENHardSNP	AC=2;AF=0.964;AN=2;DP=116;FS=0;MQRankSum=-1.741;ReadPosRankSum=-1.044;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:247,24,0:0,0,8,0
chr2	130832444	.	C	A	214.89	PASS	AC=2;AF=0.689;AN=2;DP=4238;set=variant-variant2-variant3-variant4-filterInvariant6-filterInvariant7-filterInvariant8-variant10-variant11-variant12-variant13-variant14-filterInvariant16-variant17-filterInvariant18-filterInvariant19-filterInvariant20-variant21-filterInvariant23-variant24-variant25-variant26-variant28-variant29-filterInvariant30-variant31-variant32-variant33-filterInvariant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1387,119,0:0,0,40,0
chr2	130832531	.	A	G	2050.54	PASS	AC=2;AF=0.654;AN=2;DP=13535;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,264:264:99:7937,790,0:0,0,165,99
chr2	130832873	.	G	A	311.83	PASS	AC=1;AF=0.5;AN=2;DP=4654;set=variant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant9-filterInvariant12-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant33-filterInvariant36-filterInvariant37-filterInvariant38-variant39-filterInvariant40-variant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:99,38:137:99:515,0,2737:48,51,19,19
chr2	130869609	.	A	G	58.54	PASS	AC=2;AF=1;AN=2;DP=29;FS=0;FractionInformativeReads=1;set=variant3-variant10-variant17-variant18-variant25-variant28-variant33-variant39-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:58,6,0:0,0,2,0
chr2	130869734	.	G	A	33.21	PASS	AC=2;AF=0.833;AN=2;DP=114;FractionInformativeReads=1;set=filterInvariant-filterInvariant8-variant10-variant17-filterInvariant19-variant25-variant28-variant33-filterInvariant38-variant39-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:95,9,0:0,0,0,3
chr2	130872658	.	A	T	649.82	DRAGENHardSNP	AC=2;AF=0.679;AN=2;DP=2663;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1634,168,0:0,0,43,13
chr2	130877752	.	T	C	301.8	PASS	AC=2;AF=0.692;AN=2;DP=5699;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-filterInvariant10-variant11-variant12-variant13-variant14-variant16-filterInvariant17-filterInvariant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2576,249,0:0,0,53,30
chr2	130897036	.	G	A	1391.58	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=0.804;FractionInformativeReads=1;MQ=57.45;MQRankSum=0.254;QD=13.51;ReadPosRankSum=1.066;SOR=0.573;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,54:103:99:1420,0,1275:35,14,37,17
chr2	130897055	.	G	A	631.14	PASS	AC=2;AF=0.731;AN=2;DP=3732;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:4478,348,0:0,0,80,36
chr2	130897218	.	T	C	4787.35	PASS	AC=1;AF=0.618;AN=2;DP=4827;set=variant3-variant4-variant5-variant13-variant16-variant18-variant19-variant23-variant25-variant26-variant30-variant31-variant35-variant36-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:137,107:244:99:2812,0,3519:65,72,52,55
chr2	130897234	.	C	T	1877.95	PASS	AC=1;AF=0.646;AN=2;DP=6600;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,129:242:99:3257,0,2862:54,59,59,70
chr2	130897620	.	A	G	511.71	PASS	AC=1;AF=0.64;AN=2;DP=2975;set=variant-variant2-filterInvariant3-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant14-variant17-variant18-variant20-variant21-variant27-variant28-variant32-variant33-variant34-variant37-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,27:117:99:500,0,2550:48,42,21,6
chr2	130899804	.	T	C	581.68	PASS	AC=2;AF=1;AN=2;DP=432;FS=0;FractionInformativeReads=1;set=variant3-variant4-variant7-variant8-variant10-variant11-variant14-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant28-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:536,45,0:0,0,0,15
chr2	130900188	.	A	G	3326.74	PASS	AC=1;AF=0.673;AN=2;DP=10171;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:180,187:367:99:4429,0,4547:88,92,89,98
chr2	130902067	.	C	T	361.08	PASS	AC=1;AF=0.646;AN=2;DP=3143;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:98,50:148:99:1063,0,2592:57,41,27,23
chr2	130902194	.	C	T	1546.39	PASS	AC=1;AF=0.66;AN=2;DP=3459;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,61:147:99:1440,0,2488:41,45,37,24
chr2	130902549	.	C	T	776.72	PASS	AC=1;AF=0.652;AN=2;DP=1072;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,23:40:99:624,0,462:0,17,1,22
chr2	130910847	.	G	A	1741.43	PASS	AC=1;AF=0.615;AN=2;DP=5185;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,108:189:99:2788,0,2011:42,39,63,45
chr2	130914797	.	T	C	339.6	PASS	AC=1;AF=0.615;AN=2;DP=580;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:159,0,256:7,1,5,1
chr2	130925088	.	C	T	328.8	PASS	AC=1;AF=0.625;AN=2;DP=1331;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,18:35:99:430,0,487:9,8,8,10
chr2	130930819	.	C	T	771.2	PASS	AC=1;AF=0.625;AN=2;DP=2349;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,39:89:99:913,0,1238:27,23,21,18
chr2	130932402	.	C	T	394.49	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=0;FractionInformativeReads=1;MQ=59.17;MQRankSum=-0.36;QD=13.15;ReadPosRankSum=1.122;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,18:30:99:423,0,248:7,5,11,7
chr2	130939288	.	A	G	2428.07	PASS	AC=1;AF=0.654;AN=2;DP=4925;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,93:174:99:2392,0,1824:38,43,43,50
chr2	130939348	.	G	A	1817.75	PASS	AC=1;AF=0.625;AN=2;DP=3746;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,66:139:99:1627,0,1702:30,43,27,39
chr2	130940090	.	G	T	1539.6	PASS	AC=1;AF=0.625;AN=2;DP=3561;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,68:158:99:1862,0,2546:48,42,41,27
chr2	130941034	.	T	G	165.62	PASS	AC=1;AF=0.648;AN=2;DP=927;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,9:32:99:285,0,593:14,9,8,1
chr2	130941065	.	T	C	1317.48	PASS	AC=2;AF=0.909;AN=2;DP=3170;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2046,171,0:0,0,40,17
chr2	130948303	.	T	C	1319.61	PASS	AC=1;AF=0.648;AN=2;DP=1799;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,26:57:99:936,0,1172:9,22,7,19
chr2	130948314	.	G	GT,GTT	1011.49	PASS	AC=1,0;AF=0.595,0.024;AN=2;DP=1389;set=variant4-variant5-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant22-filterInvariant24-variant25-variant26-variant30-variant31-variant35-variant36-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	0/1:41:99:5,18,5,13
chr2	130948327	.	G	T,GTT	2294.96	PASS	AC=1,0;AF=0.609,0.065;AN=2;DP=992;set=variant3-variant7-variant8-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant2-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:32:99:5,15,4,8
chr2	130949303	.	T	C	111.05	PASS	AC=1;AF=0.685;AN=2;DP=791;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:345,0,272:8,2,8,4
chr2	130949411	.	G	T	1363.59	PASS	AC=2;AF=0.919;AN=2;DP=5221;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2646,255,0:0,0,55,30
chr2	130949491	.	G	A	460.74	PASS	AC=1;AF=0.648;AN=2;DP=3869;set=variant-variant2-variant3-filterInvariant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,33:146:99:595,0,2840:62,51,10,23
chr2	130949553	.	A	G	213.8	PASS	AC=1;AF=0.62;AN=2;DP=3555;set=variant-filterInvariant2-variant3-variant7-variant8-variant9-variant10-variant11-filterInvariant12-filterInvariant14-variant17-filterInvariant20-filterInvariant21-variant25-variant27-variant28-filterInvariant32-variant33-variant34-filterInvariant37-filterInvariant40-filterInvariant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:146,24:170:99:359,0,3985:79,67,12,12
chr2	130951548	.	G	A	2349.83	PASS	AC=1;AF=0.898;AN=2;DP=6778;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:16,141:157:99:5554,0,284:13,3,57,84
chr2	130951566	.	G	A	2468.97	PASS	AC=1;AF=0.83;AN=2;DP=6538;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,130:154:99:5329,0,537:18,6,54,76
chr2	130951581	.	A	G	1343.81	PASS	AC=1;AF=0.648;AN=2;DP=4056;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,69:157:99:2625,0,3330:42,46,34,35
chr2	130951584	.	T	C	1336.8	PASS	AC=1;AF=0.648;AN=2;DP=4069;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:88,69:157:99:2565,0,3393:42,46,34,35
chr2	130951754	.	G	T	474.29	PASS	AC=1;AF=0.58;AN=2;DP=3082;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:111,40:151:99:854,0,2923:48,63,14,26
chr2	130951949	.	G	A	136.56	PASS	AC=1;AF=0.75;AN=2;DP=834;set=variant-variant3-filterInvariant6-variant7-variant8-variant9-variant10-filterInvariant12-variant14-filterInvariant17-filterInvariant20-variant21-variant25-filterInvariant28-filterInvariant32-variant33-filterInvariant37-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:56,14:70:99:154,0,1629:34,22,7,7
chr2	130952038	.	G	A	46.39	PASS	AC=1;AF=0.7;AN=2;DP=1218;set=filterInvariant-filterInvariant2-variant3-filterInvariant6-variant7-variant8-filterInvariant12-filterInvariant14-variant17-variant20-variant21-variant25-variant28-variant32-variant33-variant34-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:99,16:115:99:187,0,2654:56,43,12,4
chr2	130952053	.	G	C	38.92	PASS	AC=1;AF=0.705;AN=2;DP=1470;set=filterInvariant-filterInvariant2-variant3-filterInvariant6-variant7-variant8-filterInvariant11-filterInvariant12-filterInvariant14-variant17-filterInvariant18-variant20-variant21-variant25-variant28-variant32-variant33-variant34-filterInvariant37-variant40-variant41-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:101,21:122:99:306,0,2627:55,46,18,3
chr2	130952111	.	G	A	171.5	PASS	AC=1;AF=0.696;AN=2;DP=1594;set=variant2-variant3-variant6-variant7-variant8-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant28-variant32-variant33-variant34-variant37-variant40-variant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:78,31:109:99:455,0,2084:33,45,16,15
chr2	130952498	.	G	A	714.43	PASS	AC=1;AF=0.667;AN=2;DP=2019;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,38:82:99:1218,0,1434:36,8,33,5
chr2	130952540	.	C	T	1580.35	PASS	AC=1;AF=0.667;AN=2;DP=4493;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:85,87:172:99:2270,0,2344:61,24,61,26
chr2	130952718	.	G	A	1296.41	PASS	AC=1;AF=0.667;AN=2;DP=5854;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:188,47:235:99:1373,0,9495:72,116,17,30
chr2	130952725	.	C	T	1200.81	PASS	AC=1;AF=0.704;AN=2;DP=5612;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:183,49:232:99:1438,0,9338:70,113,21,28
chr2	130960023	.	T	C	1377.47	PASS	AC=1;AF=0.685;AN=2;DP=3971;set=variant-variant2-variant3-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant23-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,65:118:99:1945,0,1350:24,29,29,36
chr2	130961729	.	AT	ATT,A	187.66	PASS	AC=1,0;AF=0.63,0.037;AN=2;DP=1153;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant17-variant18-variant20-variant21-variant24-variant25-variant27-variant28-variant32-variant33-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:31:99:7,10,7,7
chr2	130988166	.	A	G	691.88	PASS	AC=1;AF=0.5;AN=2;DP=4342;set=variant-variant2-variant3-variant6-variant9-variant10-filterInvariant12-filterInvariant14-variant15-filterInvariant17-variant18-variant20-filterInvariant24-filterInvariant25-variant26-variant31-filterInvariant32-variant35-filterInvariant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:126,49:175:99:930,0,3614:61,65,32,17
chr2	130988203	.	C	T	753.16	PASS	AC=1;AF=0.5;AN=2;DP=4189;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:128,57:185:99:1075,0,3789:65,63,34,23
chr2	130988216	.	C	G	876.86	PASS	AC=1;AF=0.5;AN=2;DP=4133;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:121,56:177:99:1073,0,3731:61,60,32,24
chr2	130988276	.	C	T	474.82	PASS	AC=1;AF=0.5;AN=2;DP=3849;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:142,38:180:99:633,0,4267:73,69,15,23
chr2	130988410	.	G	A	1200.75	PASS	AC=1;AF=0.5;AN=2;DP=5350;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:166,39:205:99:1115,0,9882:86,80,22,17
chr2	130988421	.	C	T	1327.45	PASS	AC=1;AF=0.5;AN=2;DP=5753;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:175,46:221:99:1221,0,10122:97,78,25,21
chr2	131100204	.	G	A	1188.62	PASS	AC=1;AF=0.5;AN=2;DP=176;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,40:84:99:1103,0,1317:27,17,26,14
chr2	131103479	.	C	T	2955.83	PASS	AC=1;AF=0.5;AN=2;DP=430;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,111:220:99:2995,0,2871:55,54,62,49
chr2	131103635	.	C	T	4126.37	PASS	AC=1;AF=0.5;AN=2;DP=1781;MQ=60;set=variant5-variant13-variant19-variant35-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:151,122:273:99:2837,0,3949:71,80,56,66
chr2	131132366	.	C	T	608.19	PASS	AC=1;AF=0.5;AN=2;DP=380;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant10-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,29:73:99:786,0,1284:18,26,13,16
chr2	131221102	.	T	C	794.89	DRAGENHardSNP	AC=2;AF=0.989;AN=2;DP=1983;FS=0;MQRankSum=-2.896;ReadPosRankSum=0.055;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1250,132,0:0,0,33,11
chr2	131221170	.	C	T	2296.48	DRAGENHardSNP	AC=2;AF=0.895;AN=2;DP=7370;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:3805,437,0:0,0,90,56
chr2	131221445	.	G	A	33.29	DRAGENHardSNP	AC=2;AF=0.988;AN=2;DP=218;FS=0;FractionInformativeReads=1;MQRankSum=-0.55;ReadPosRankSum=0.937;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:358,36,0:0,0,1,11
chr2	131232617	.	G	T	32.29	DRAGENHardSNP	AC=2;AF=0.917;AN=2;DP=112;FS=0;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:79,9,0:0,0,1,2
chr2	131266530	.	C	A	2870.96	PASS	AC=2;AF=0.875;AN=2;DP=11532;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:2,194:196:99:5616,548,0:1,1,112,82
chr2	131377452	.	G	A	208.27	PASS	AC=1;AF=0.5;AN=2;DP=75;FractionInformativeReads=1;set=variant2-variant6-filterInvariant12-variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:68:68,0,344:9,2,2,2
chr2	131390144	.	G	A	46.46	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=5;FS=0;FractionInformativeReads=1;MQ=27.84;MQRankSum=-0.358;QD=9.29;ReadPosRankSum=1.231;SOR=1.022;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:28:75,0,28:2,0,3,0
chr2	131407692	.	T	C	158.89	PASS	AC=1;AF=0.512;AN=2;DP=426;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:217,0,238:6,1,6,0
chr2	131407943	.	T	G	116.99	PASS	AC=1;AF=0.5;AN=2;DP=1368;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant7-filterInvariant9-filterInvariant10-variant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-variant20-variant21-filterInvariant22-variant23-filterInvariant24-variant25-variant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-variant31-variant32-filterInvariant33-filterInvariant34-variant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-variant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:29,7:36:95:95,0,748:9,20,1,6
chr2	131414061	.	A	G	59.59	PASS	AC=1;AF=0.513;AN=2;DP=719;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-filterInvariant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:240,0,291:4,0,6,0
chr2	131414073	.	T	A	142.1	PASS	AC=1;AF=0.511;AN=2;DP=1012;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:279,0,322:5,0,7,0
chr2	131414176	.	C	T	1123.66	PASS	AC=1;AF=0.511;AN=2;DP=5871;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,40:99:99:890,0,1440:39,20,29,11
chr2	131414878	.	A	C	225.96	PASS	AC=1;AF=0.563;AN=2;DP=223;FractionInformativeReads=1;set=filterInvariant2-variant12-filterInvariant15-variant27-filterInvariant34-variant36-filterInvariant38-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:412,0,527:18,1,16,0
chr2	131486765	.	C	G	1052.78	PASS	AC=1;AF=0.5;AN=2;DP=257;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,33:66:99:960,0,963:19,14,23,10
chr2	131487200	.	T	C	2854.03	PASS	AC=1;AF=0.5;AN=2;DP=226;FS=0;FractionInformativeReads=0.996;MQ=60;MQRankSum=-0.126;QD=12.63;ReadPosRankSum=1.185;SOR=0.673;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:109,116:225:99:2882,0,2516:53,56,57,59
chr2	131487673	.	A	C	3726.13	PASS	AC=2;AF=0.86;AN=2;DP=7169;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,161:161:99:5263,482,0:0,0,89,72
chr2	131487897	.	A	C	2866.39	PASS	AC=1;AF=0.5;AN=2;DP=957;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:122,133:255:99:3510,0,3003:54,68,61,72
chr2	131512905	.	C	G	114.45	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=3.68;FractionInformativeReads=1;MQ=60;MQRankSum=0.922;QD=14.31;ReadPosRankSum=-0.922;SOR=0.039;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:143,0,159:4,0,2,2
chr2	131519466	.	C	T	136.66	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;set=variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:85:243,0,85:3,0,6,2
chr2	131520663	.	T	C	6108.01	PASS	AC=2;AF=0.943;AN=2;DP=9706;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,227:227:99:7063,680,0:0,0,99,128
chr2	131520945	.	C	G	2718.12	PASS	AC=1;AF=0.5;AN=2;DP=948;FS=0;MQ=60;set=variant2-variant10-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:90,132:222:99:3540,0,2170:46,44,68,64
chr2	131524230	.	T	C	210.74	PASS	AC=2;AF=0.907;AN=2;DP=477;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:506,48,0:0,0,11,5
chr2	131524991	.	T	C	593.41	PASS	AC=2;AF=0.625;AN=2;DP=251;FractionInformativeReads=1;MQ=60;set=variant2-variant10-variant36-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2378,207,0:0,0,22,47
chr2	131525505	.	C	T	521.24	PASS	AC=1;AF=0.5;AN=2;DP=222;MQ=60;set=variant2-variant10-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,26:44:99:735,0,398:8,10,11,15
chr2	131525684	.	T	C	520.12	PASS	AC=1;AF=0.5;AN=2;DP=136;FractionInformativeReads=1;MQ=60;set=variant2-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,19:43:99:472,0,625:9,15,8,11
chr2	131525832	.	G	A	47.92	PASS	AC=1;AF=0.5;AN=2;DP=39;FractionInformativeReads=1;MQ=60;set=variant2-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:78:78,0,79:1,1,0,2
chr2	131595022	.	G	C	1181.69	PASS	AC=1;AF=0.5;AN=2;DP=613;MQ=60;set=variant5-variant6-variant10-variant20-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:68,59:127:99:1384,0,1792:36,32,31,28
chr2	131672101	.	T	C	2093	PASS	AC=2;AF=0.722;AN=2;DP=2619;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2231,201,0:0,0,30,37
chr2	131672271	.	T	C	1445.56	PASS	AC=2;AF=1;AN=2;DP=3020;FS=0;MQ=60;MQRankSum=1.319;ReadPosRankSum=1.474;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2237,198,0:0,0,31,35
chr2	131672950	.	A	G	1734.45	PASS	AC=1;AF=0.686;AN=2;DP=4064;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,54:105:99:1539,0,1345:20,31,28,26
chr2	131673316	.	C	T	2647.56	PASS	AC=2;AF=0.714;AN=2;DP=4378;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,126:126:99:3772,373,0:0,0,64,62
chr2	131673496	.	T	G	2515.32	PASS	AC=1;AF=0.5;AN=2;DP=321;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,79:154:99:1959,0,1793:43,32,42,37
chr2	131674285	.	A	G	1600.1	PASS	AC=1;AF=0.686;AN=2;DP=2895;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,30:68:99:826,0,1035:18,20,15,15
chr2	131674870	.	G	A	1412.3	PASS	AC=1;AF=0.5;AN=2;DP=319;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,84:158:99:2062,0,1801:41,33,42,42
chr2	131688587	.	G	A	1101.7	PASS	AC=1;AF=0.556;AN=2;DP=1600;MQ=60;set=variant4-variant10-variant12-variant16-variant17-variant18-variant19-variant20-variant29-variant30-variant31-variant33-variant34-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,39:85:99:922,0,1308:17,29,21,18
chr2	131703968	.	G	C	412.56	PASS	AC=1;AF=0.583;AN=2;DP=347;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant12-variant16-variant17-variant18-variant19-variant20-variant29-variant30-variant31-variant33-variant34-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:389,0,299:8,1,10,2
chr2	131769237	.	G	A	1172.17	PASS	AC=1;AF=0.846;AN=2;DP=2247;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,28:71:99:642,0,1173:28,15,16,12
chr2	131785286	.	G	A	110.94	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.8;QD=7.92;ReadPosRankSum=0.533;SOR=0.631;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:139,0,268:7,2,4,1
chr2	131785721	.	C	T	358.62	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=1.202;FractionInformativeReads=1;MQ=60;MQRankSum=-0.218;QD=7.32;ReadPosRankSum=0.28;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,18:49:99:387,0,934:10,21,7,11
chr2	131796772	.	T	C	325.66	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=3.274;FractionInformativeReads=1;MQ=60;MQRankSum=-0.241;QD=19.16;ReadPosRankSum=2.454;SOR=1.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:354,0,205:1,7,0,9
chr2	131798509	.	A	AC	31.66	PASS	AC=2;AF=0.6;AN=2;DP=84;MQ=60;set=variant23-variant29-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:434,36,0:0,0,9,3
chr2	131798517	.	C	A	102.01	PASS	AC=1;AF=0.5;AN=2;DP=93;FractionInformativeReads=1;MQ=60;set=variant23-variant29-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:124,0,226:6,3,4,0
chr2	131798737	.	C	G	1022.92	PASS	AC=2;AF=0.6;AN=2;DP=516;MQ=60;set=variant23-variant29-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,90:91:99:2938,227,0:1,0,54,36
chr2	131799563	.	C	T	916.39	PASS	AC=2;AF=0.6;AN=2;DP=483;MQ=60;set=variant23-variant29-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2760,263,0:0,0,33,55
chr2	131800943	.	G	C	484.1	PASS	AC=2;AF=0.571;AN=2;DP=255;FractionInformativeReads=1;MQ=60;set=variant14-variant23-variant29-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1071,87,0:0,0,23,6
chr2	131802045	.	C	T	1464.8	PASS	AC=1;AF=0.5;AN=2;DP=1213;MQ=60;set=variant14-variant23-variant29-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,75:137:99:1932,0,1828:21,41,30,45
chr2	131803361	.	C	T	1661.83	PASS	AC=1;AF=0.5;AN=2;DP=195;FS=2.525;FractionInformativeReads=1;MQ=60;MQRankSum=0.282;QD=8.52;ReadPosRankSum=1.24;SOR=0.884;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:119,76:195:99:1690,0,2812:62,57,43,33
chr2	131804366	.	T	TTGTG,TTG	1030.4	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=200;MQ=60;set=variant34-variant41	GT:DP:GQ:SB	0/2:93:99:19,25,17,32
chr2	131804649	.	G	A	641.6	PASS	AC=1;AF=0.5;AN=2;DP=61;FS=5.145;FractionInformativeReads=1;MQ=60;MQRankSum=2.439;QD=10.52;ReadPosRankSum=0.253;SOR=0.618;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,33:61:99:670,0,751:17,11,15,18
chr2	131804913	.	G	A	82.93	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.851;QD=8.29;ReadPosRankSum=-1.951;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:111,0,134:1,4,1,4
chr2	131805984	.	G	T	916.48	PASS	AC=1;AF=0.5;AN=2;DP=550;MQ=60;set=variant14-variant23-variant29-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,43:90:99:1012,0,1214:20,27,19,24
chr2	131806905	.	T	C	1130.68	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=5.51;FractionInformativeReads=1;MQ=60;MQRankSum=-0.207;QD=13.3;ReadPosRankSum=0.489;SOR=0.995;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1159,0,898:21,18,19,27
chr2	131807128	.	A	G	574.89	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.201;QD=13.69;ReadPosRankSum=0.025;SOR=0.708;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:603,0,586:10,11,11,10
chr2	131808556	.	A	AT	705.09	PASS	AC=1;AF=0.5;AN=2;DP=68;FS=2.059;FractionInformativeReads=0.956;MQ=60;MQRankSum=-0.455;QD=10.37;ReadPosRankSum=0.086;SOR=0.584;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:742,0,956:20,16,14,15
chr2	131808655	.	C	T	839.22	PASS	AC=1;AF=0.5;AN=2;DP=76;FS=1.852;FractionInformativeReads=1;MQ=60;MQRankSum=-1.699;QD=11.04;ReadPosRankSum=-1.094;SOR=0.831;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,35:76:99:867,0,1085:21,20,16,19
chr2	131809056	.	GA	G,GAA	205.56	PASS	AC=2,0;AF=0.5,0.036;AN=2;DP=2792;set=filterInvariant2-filterInvariant5-filterInvariant10-filterInvariant12-variant14-filterInvariant19-variant21-variant23-variant29-variant35-variant37-variant38-variant40-variant41	GT:DP:GQ:SB	1/1:140:99:1,4,65,70
chr2	131809197	.	C	T	1797.59	PASS	AC=2;AF=0.571;AN=2;DP=1464;MQ=60;set=variant14-variant23-variant29-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,192:192:99:5812,574,0:0,0,102,90
chr2	131809436	.	A	T	1013.26	PASS	AC=1;AF=0.5;AN=2;DP=429;MQ=60;set=variant14-variant29-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:47,43:90:99:1003,0,1172:20,27,18,25
chr2	131810267	.	T	G	118.94	PASS	AC=1;AF=0.5;AN=2;DP=111;FractionInformativeReads=1;MQ=60;set=variant14-variant23-variant29-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:149,0,164:5,2,4,1
chr2	131810380	.	T	C	752.4	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=1.15;FractionInformativeReads=1;MQ=60;MQRankSum=-2.065;QD=16.01;ReadPosRankSum=0.952;SOR=0.438;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,26:47:99:781,0,532:13,8,14,12
chr2	131812738	.	C	T	1028.88	PASS	AC=1;AF=0.5;AN=2;DP=528;FractionInformativeReads=1;MQ=60;set=variant14-variant23-variant29-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,36:81:99:831,0,1277:33,12,23,13
chr2	131813442	.	A	G	201.22	PASS	AC=2;AF=1;AN=2;DP=372;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:217,15,0:0,0,0,5
chr2	131829557	.	G	GACAC	980.56	PASS	AC=1;AF=0.5;AN=2;DP=85;FS=0.863;FractionInformativeReads=0.918;MQ=60;MQRankSum=0.944;QD=11.54;ReadPosRankSum=-1.406;SOR=0.856;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,43:78:99:1018,0,888:16,19,18,25
chr2	131829560	.	A	ACACC	950.33	PASS	AC=1;AF=0.5;AN=2;DP=502;MQ=60;set=variant14-variant23-variant29-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,35:79:99:925,0,1035:18,26,16,19
chr2	131850822	.	C	A	449.82	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=2.386;FractionInformativeReads=1;MQ=60;MQRankSum=0.214;QD=9;ReadPosRankSum=-0.292;SOR=1.085;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:478,0,608:14,13,14,9
chr2	131862700	.	A	T	51.54	PASS	AC=2;AF=0.625;AN=2;DP=68;MQ=60;set=variant23-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:291,33,0:0,0,5,6
chr2	131865064	.	A	G	885.08	PASS	AC=1;AF=0.5;AN=2;DP=669;MQ=60;set=variant14-variant23-variant29-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,58:97:99:1642,0,1099:30,9,41,17
chr2	131878495	.	T	C	2607.96	PASS	AC=1;AF=0.5;AN=2;DP=239;FS=2.851;FractionInformativeReads=1;MQ=60;MQRankSum=0.23;QD=10.91;ReadPosRankSum=-0.301;SOR=0.876;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:130,109:239:99:2636,0,3096:64,66,49,60
chr2	131888424	.	C	G	240.19	PASS	AC=2;AF=0.571;AN=2;DP=81;FractionInformativeReads=1;MQ=60;set=variant23-variant29-variant34-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:366,30,0:0,0,2,8
chr2	131905296	.	A	G	75.48	PASS	AC=2;AF=0.75;AN=2;DP=18;FractionInformativeReads=1;MQ=60;set=variant14-variant29-variant38-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:90,6,0:0,0,2,0
chr2	131906250	.	C	G	2676.61	PASS	AC=1;AF=0.5;AN=2;DP=1508;set=variant14-variant23-variant29-variant34-variant35-variant37-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:115,99:214:99:2731,0,2766:64,51,57,42
chr2	131948059	.	C	T	562.4	PASS	AC=1;AF=0.5;AN=2;DP=148;FractionInformativeReads=1;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,48:82:99:1259,0,868:17,17,25,23
chr2	131976272	.	G	C	1515.06	PASS	AC=2;AF=0.953;AN=2;DP=4762;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3171,315,0:0,0,60,45
chr2	131988269	.	T	C	138.58	PASS	AC=2;AF=0.963;AN=2;DP=82;FS=0;FractionInformativeReads=1;MQRankSum=-1.231;set=variant3-filterInvariant4-variant5-variant7-variant8-variant9-variant13-variant15-variant16-variant18-variant19-filterInvariant21-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,2:2:6:84,6,0:0,0,2,0
chr2	132021908	.	G	A	712.15	PASS	AC=1;AF=0.5;AN=2;DP=1505;set=variant3-filterInvariant4-filterInvariant5-filterInvariant13-variant16-filterInvariant19-filterInvariant23-variant25-filterInvariant26-variant30-filterInvariant31-filterInvariant36-filterInvariant39-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:75,13:88:88:88,0,2074:11,64,2,11
chr2	132021946	.	G	A	395.19	PASS	AC=1;AF=0.5;AN=2;DP=1088;set=filterInvariant2-variant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant35-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:19,16:35:99:425,0,488:1,18,1,15
chr2	132044701	.	G	A	70.64	PASS	AC=1;AF=0.5;AN=2;DP=230;FractionInformativeReads=1;set=variant2-variant3-variant4-variant9-variant10-variant14-variant15-variant17-variant21-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,2:10:99:102,0,327:7,1,2,0
chr2	132044707	.	G	A	58.6	PASS	AC=1;AF=0.5;AN=2;DP=305;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant11-variant14-variant15-variant17-variant26-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,327:7,1,3,0
chr2	132044708	.	T	A	58.6	PASS	AC=1;AF=0.522;AN=2;DP=313;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant14-variant15-variant17-variant26-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,327:7,1,3,0
chr2	132044712	.	A	G	91.97	PASS	AC=1;AF=0.521;AN=2;DP=353;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant26-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,327:7,1,3,0
chr2	132044713	.	G	T	91.97	PASS	AC=1;AF=0.521;AN=2;DP=356;FractionInformativeReads=1;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant26-variant29-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:99:102,0,327:7,1,3,0
chr2	132044730	.	G	A	229.2	PASS	AC=1;AF=0.5;AN=2;DP=580;set=variant2-variant4-variant6-variant8-variant9-variant10-variant11-variant14-variant15-variant17-variant19-variant20-variant22-variant25-variant26-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:202,0,252:8,1,6,3
chr2	132044746	.	C	A	276.63	PASS	AC=1;AF=0.5;AN=2;DP=851;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-filterInvariant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:206,0,317:9,3,6,4
chr2	132044787	.	G	A	49.44	PASS	AC=1;AF=0.5;AN=2;DP=2049;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:442,0,642:9,8,6,6
chr2	132044797	.	C	A	49.44	PASS	AC=1;AF=0.5;AN=2;DP=2221;FractionInformativeReads=1;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:448,0,594:7,8,6,6
chr2	132044842	.	G	A	388.22	PASS	AC=1;AF=0.5;AN=2;DP=1342;set=variant2-variant4-variant8-variant9-filterInvariant12-variant13-filterInvariant14-variant17-variant18-variant20-filterInvariant21-variant22-variant23-filterInvariant25-variant26-variant28-variant33-filterInvariant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:22,10:32:99:293,0,894:9,13,5,5
chr2	132044849	.	T	A	382.67	PASS	AC=1;AF=0.5;AN=2;DP=2181;set=variant2-variant4-variant6-filterInvariant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-filterInvariant24-variant25-variant26-filterInvariant27-variant28-filterInvariant29-filterInvariant30-variant33-filterInvariant35-variant36-variant38-variant39-variant40-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:23,7:30:99:246,0,921:9,14,3,4
chr2	132044876	.	T	C	32.14	PASS	AC=1;AF=0.5;AN=2;DP=2024;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-variant6-filterInvariant7-variant9-variant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant16-variant18-variant19-variant20-filterInvariant21-variant22-variant23-filterInvariant24-variant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-filterInvariant35-variant36-variant38-variant39-variant40-filterInvariant41-filterInvariant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:23,4:27:79:79,0,919:10,13,1,3
chr2	132044992	.	T	C	203.04	PASS	AC=2;AF=1;AN=2;DP=527;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:121,12,0:0,0,1,3
chr2	132110463	.	G	C	1093.01	PASS	AC=2;AF=0.953;AN=2;DP=1849;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1085,99,0:0,0,17,16
chr2	132110828	.	G	T	61.02	PASS	AC=2;AF=0.932;AN=2;DP=159;FS=0;FractionInformativeReads=1;set=filterInvariant3-variant4-variant5-variant7-variant8-variant10-filterInvariant11-variant12-variant13-variant16-variant19-variant24-filterInvariant25-variant26-variant28-variant33-variant34-variant35-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:334,36,0:0,0,5,7
chr2	132111121	.	G	A	973.5	PASS	AC=2;AF=0.942;AN=2;DP=1401;set=variant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-variant22-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:90:1350,90,0:0,0,11,18
chr2	132111123	.	T	C	973.5	PASS	AC=2;AF=0.942;AN=2;DP=1362;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-variant22-variant24-variant25-variant26-filterInvariant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1350,90,0:0,0,12,18
chr2	132111127	.	G	T	889.52	PASS	AC=2;AF=0.942;AN=2;DP=1318;FractionInformativeReads=1;set=variant-variant2-variant3-filterInvariant4-variant5-filterInvariant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-filterInvariant16-filterInvariant17-variant18-filterInvariant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-filterInvariant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:93:1387,93,0:0,0,11,18
chr2	132111166	.	G	GCC	907.08	PASS	AC=2;AF=0.942;AN=2;DP=1389;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:84:1170,84,0:0,0,11,16
chr2	132111167	.	G	GCCGCCGCCGC,GCCGCCGCCGCCGC,GCCGCCGC,GCCGCCACCGC	907.21	PASS	AC=1,0,0,1;AF=0.884,0.012,0.023,0.023;AN=2;DP=1352;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/1:21:99:0,0,10,11
chr2	132120501	.	C	CT	1308.74	PASS	AC=2;AF=0.895;AN=2;DP=2369;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1709,168,0:0,0,45,11
chr2	132120997	.	G	A	1873.6	PASS	AC=1;AF=0.5;AN=2;DP=145;FS=0;FractionInformativeReads=1;MQ=46.38;MQRankSum=-0.501;QD=12.92;ReadPosRankSum=0.651;SOR=0.664;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:69,76:145:99:1902,0,1796:24,45,27,49
chr2	132121350	.	G	C	309.42	PASS	AC=1;AF=0.857;AN=2;DP=1136;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:436,0,411:10,11,10,5
chr2	132200096	.	A	G	306.23	PASS	AC=1;AF=0.632;AN=2;DP=294;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:143,0,246:6,2,3,1
chr2	132200114	.	T	C	512.99	PASS	AC=1;AF=0.625;AN=2;DP=404;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,11:23:99:288,0,385:10,2,7,4
chr2	132200136	.	C	A	596.53	PASS	AC=1;AF=0.625;AN=2;DP=563;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:325,0,520:14,5,8,6
chr2	132200256	.	T	C	3041.08	PASS	AC=1;AF=0.625;AN=2;DP=2780;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,66:128:99:1594,0,1580:35,27,38,28
chr2	132200307	.	G	A	4344.5	PASS	AC=1;AF=0.625;AN=2;DP=4211;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:102,111:213:99:2558,0,2670:59,43,65,46
chr2	132200529	.	A	G	3979.86	PASS	AC=1;AF=0.625;AN=2;DP=3834;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:114,87:201:99:2265,0,3085:65,49,52,35
chr2	132200935	.	C	T	1271.28	PASS	AC=1;AF=0.632;AN=2;DP=2602;set=variant-filterInvariant2-filterInvariant3-variant6-variant9-variant10-filterInvariant12-filterInvariant14-variant15-variant17-variant18-variant20-filterInvariant24-filterInvariant25-filterInvariant31-variant32-variant35-filterInvariant37-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:124,30:154:99:752,0,3181:54,70,0,30
chr2	132200984	.	G	A	519.48	PASS	AC=1;AF=0.679;AN=2;DP=1167;set=variant-filterInvariant3-variant6-filterInvariant9-variant15-filterInvariant17-variant18-variant24-variant25-filterInvariant31-filterInvariant32-variant35-filterInvariant37-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:97,13:110:99:219,0,4780:46,51,0,13
chr2	132200995	.	C	T	564.58	PASS	AC=1;AF=0.615;AN=2;DP=987;FractionInformativeReads=1;set=variant-filterInvariant3-variant6-filterInvariant9-variant15-variant18-variant24-variant25-filterInvariant31-filterInvariant32-variant35-filterInvariant37-filterInvariant41	GT:AD:DP:GQ:PL:SB	0/1:92,9:101:99:160,0,4747:46,46,0,9
chr2	132201288	.	A	G	1528.34	PASS	AC=1;AF=0.625;AN=2;DP=2918;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:118,48:166:99:1302,0,3198:70,48,41,7
chr2	132201582	.	A	G	3752.45	PASS	AC=1;AF=0.625;AN=2;DP=5553;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:146,142:288:99:3848,0,3854:71,75,65,77
chr2	132201663	.	T	C	3945.33	PASS	AC=1;AF=0.63;AN=2;DP=6896;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant34-variant35-variant37-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:148,140:288:99:3563,0,4002:68,80,65,75
chr2	132201718	.	T	C	4168.14	PASS	AC=1;AF=0.625;AN=2;DP=6007;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:119,152:271:99:5788,0,4369:56,63,72,80
chr2	132201736	.	C	G	3713.19	PASS	AC=1;AF=0.625;AN=2;DP=5852;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:114,148:262:99:5662,0,4253:53,61,64,84
chr2	132201862	.	C	G	1220.38	PASS	AC=1;AF=0.625;AN=2;DP=3480;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:87,66:153:99:1814,0,2274:37,50,24,42
chr2	132201889	.	C	A	1045.27	PASS	AC=1;AF=0.625;AN=2;DP=2980;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,51:128:99:1247,0,1985:34,43,20,31
chr2	132201930	.	T	C	881.48	PASS	AC=1;AF=0.625;AN=2;DP=2297;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,35:99:99:989,0,1854:24,40,13,22
chr2	132202050	.	T	C	488.39	PASS	AC=1;AF=0.625;AN=2;DP=964;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,20:43:99:565,0,653:10,13,10,10
chr2	132229725	.	C	T	1893.5	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=0;FractionInformativeReads=0.993;MQ=58.75;MQRankSum=-2.682;QD=13.43;ReadPosRankSum=1.347;SOR=0.708;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:67,73:140:99:1922,0,1770:25,42,27,46
chr2	132238082	.	T	C	580.28	PASS	AC=1;AF=0.5;AN=2;DP=185;set=variant24-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,19:107:99:449,0,2348:46,42,18,1
chr2	132240190	.	C	T	2041.81	PASS	AC=1;AF=0.5;AN=2;DP=230;FS=3.755;FractionInformativeReads=1;MQ=46.93;MQRankSum=-1.842;QD=8.88;ReadPosRankSum=-1.404;SOR=0.797;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:139,91:230:99:2070,0,3563:72,67,42,49
chr2	132240509	.	C	A	715.07	PASS	AC=1;AF=0.635;AN=2;DP=962;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,10:29:99:270,0,669:2,17,3,7
chr2	132248168	.	G	A	1477.75	PASS	AC=1;AF=0.5;AN=2;DP=138;FS=0.642;FractionInformativeReads=0.993;MQ=60;MQRankSum=-0.283;QD=10.71;ReadPosRankSum=0.408;SOR=0.592;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,64:137:99:1506,0,1900:43,30,36,28
chr2	132248262	.	C	T	1591.23	PASS	AC=1;AF=0.5;AN=2;DP=146;FS=4.892;FractionInformativeReads=1;MQ=59.52;MQRankSum=-1.13;QD=10.9;ReadPosRankSum=0.926;SOR=0.975;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:76,70:146:99:1619,0,1898:39,37,30,40
chr2	132248379	.	T	G	3986.88	PASS	AC=1;AF=0.635;AN=2;DP=4336;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:75,62:137:99:1717,0,1864:39,36,35,27
chr2	132248584	.	T	C	8230.81	PASS	AC=2;AF=1;AN=2;DP=12870;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,243:243:99:7557,728,0:0,0,130,113
chr2	132248876	.	A	G	480.6	PASS	AC=1;AF=0.635;AN=2;DP=350;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:215,0,300:4,8,1,6
chr2	132249372	.	C	T	1076.75	PASS	AC=2;AF=0.989;AN=2;DP=1585;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1105,107,0:0,0,21,15
chr2	132249600	.	G	A	7504.38	PASS	AC=1;AF=0.684;AN=2;DP=2738;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,46:109:99:1696,0,3494:40,23,28,18
chr2	132249605	.	G	A	7528.88	PASS	AC=1;AF=0.684;AN=2;DP=2785;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,46:109:99:1712,0,3551:39,24,27,19
chr2	132250067	.	G	GGGAGCGGCA,GGGAGCCGCA	1196.93	PASS	AC=1,0;AF=0.658,0.026;AN=2;DP=877;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:DP:GQ:SB	0/1:35:99:12,12,7,4
chr2	132250093	.	T	G	906.42	PASS	AC=1;AF=0.684;AN=2;DP=965;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:31,13:44:99:326,0,820:16,15,9,4
chr2	132256319	.	C	G	201.22	PASS	AC=1;AF=0.684;AN=2;DP=330;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,6:19:99:132,0,361:8,5,4,2
chr2	132256410	.	G	A	1501.77	PASS	AC=1;AF=0.684;AN=2;DP=1067;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:819,0,819:10,11,11,10
chr2	132256414	.	C	T	1501.77	PASS	AC=1;AF=0.684;AN=2;DP=1089;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,21:43:99:858,0,882:11,11,11,10
chr2	132256420	.	C	T	1586.03	PASS	AC=1;AF=0.684;AN=2;DP=1119;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,23:45:99:892,0,879:11,11,13,10
chr2	132256505	.	A	C	1478.79	PASS	AC=1;AF=0.648;AN=2;DP=1529;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:417,0,452:9,10,9,10
chr2	132256559	.	T	C	1233.79	PASS	AC=1;AF=0.684;AN=2;DP=761;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:349,0,339:7,8,6,9
chr2	132258031	.	A	G	1270.47	PASS	AC=1;AF=0.684;AN=2;DP=946;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:593,0,559:13,6,16,6
chr2	132258815	.	G	A	1702.77	PASS	AC=1;AF=0.684;AN=2;DP=2828;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,65:142:99:1706,0,2123:40,37,31,34
chr2	132259005	.	G	A	2166.96	PASS	AC=1;AF=0.5;AN=2;DP=158;FS=1.994;FractionInformativeReads=1;MQ=59.3;MQRankSum=1.632;QD=13.71;ReadPosRankSum=2.276;SOR=0.548;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:71,87:158:99:2195,0,1770:29,42,39,48
chr2	132263793	.	C	G	184.26	PASS	AC=1;AF=0.684;AN=2;DP=743;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,20:36:99:549,0,480:12,4,13,7
chr2	132266015	.	T	A	5250.46	PASS	AC=1;AF=0.684;AN=2;DP=3770;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:88,96:184:99:2321,0,2009:48,40,56,40
chr2	132266142	.	G	C	4681.1	PASS	AC=1;AF=0.648;AN=2;DP=3976;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:83,77:160:99:2062,0,2054:34,49,31,46
chr2	132266281	.	TG	T	916.11	PASS	AC=1;AF=0.684;AN=2;DP=573;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:416,0,414:3,11,1,13
chr2	132272149	.	G	A	196.77	PASS	AC=1;AF=0.694;AN=2;DP=162;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:58:165,0,58:1,0,3,0
chr2	132272158	.	T	A	241.77	PASS	AC=1;AF=0.694;AN=2;DP=194;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:95:288,0,95:1,1,6,1
chr2	132272160	.	G	A	241.77	PASS	AC=1;AF=0.694;AN=2;DP=202;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:95:288,0,95:1,1,6,1
chr2	132272235	.	GA	G	470.55	PASS	AC=1;AF=0.684;AN=2;DP=703;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,25:36:99:596,0,200:6,5,14,11
chr2	132272326	.	A	G	628.24	PASS	AC=1;AF=0.684;AN=2;DP=850;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,29:49:99:688,0,380:10,10,12,17
chr2	132273092	.	T	G	5805.15	PASS	AC=1;AF=0.684;AN=2;DP=4069;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:72,88:160:99:2157,0,1629:45,27,54,34
chr2	132273230	.	AC	A	2292.48	PASS	AC=1;AF=0.5;AN=2;DP=264;set=variant-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,62:112:99:1953,0,1493:12,38,21,41
chr2	132273426	.	GGAGTC	G	232.73	PASS	AC=1;AF=0.722;AN=2;DP=135;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:240,0,290:1,3,3,3
chr2	132273797	.	C	CA	1672.73	PASS	AC=1;AF=0.684;AN=2;DP=1888;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:56,41:97:99:1580,0,9426:32,24,25,16
chr2	132273798	.	C	CT	1672.73	PASS	AC=1;AF=0.684;AN=2;DP=1883;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,42:100:99:1580,0,9426:34,24,26,16
chr2	132273801	.	C	T	1726.77	PASS	AC=1;AF=0.684;AN=2;DP=1920;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,41:101:99:1540,0,9472:35,25,26,15
chr2	132273802	.	C	CATTAG	1717.73	PASS	AC=1;AF=0.684;AN=2;DP=1933;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:60,41:101:99:1540,0,9472:35,25,26,15
chr2	132274474	.	G	A	3116.65	PASS	AC=1;AF=0.684;AN=2;DP=2594;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,46:101:99:1215,0,1307:23,32,22,24
chr2	132275343	.	G	T	1360.27	PASS	AC=1;AF=0.648;AN=2;DP=4615;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:85,69:154:99:1574,0,2037:47,38,37,32
chr2	132275396	.	T	C	1476.03	PASS	AC=1;AF=0.672;AN=2;DP=5375;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,79:173:99:1769,0,2152:46,48,36,43
chr2	132275838	.	C	G	1037.35	PASS	AC=1;AF=0.684;AN=2;DP=480;FractionInformativeReads=1;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,17:22:99:501,0,132:5,0,11,6
chr2	132276650	.	G	C	213.97	PASS	AC=1;AF=0.706;AN=2;DP=771;set=variant-variant2-variant3-variant6-variant9-variant13-filterInvariant14-variant15-variant17-variant18-variant20-variant24-variant25-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,13:51:99:213,0,1059:28,10,9,4
chr2	132277686	.	C	T	8383.25	PASS	AC=1;AF=0.684;AN=2;DP=7981;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:179,192:371:99:4520,0,4237:91,88,106,86
chr2	132277962	.	T	C	5112.83	PASS	AC=1;AF=0.648;AN=2;DP=5023;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:88,85:173:99:1929,0,2283:41,47,38,47
chr2	132277984	.	G	A	3615.19	PASS	AC=1;AF=0.684;AN=2;DP=2864;set=variant-variant2-variant3-variant6-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:75,68:143:99:1621,0,1922:30,45,26,42
chr2	132286046	.	A	G	817.67	PASS	AC=1;AF=0.648;AN=2;DP=3009;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,38:93:99:910,0,1566:20,35,20,18
chr2	132286061	.	A	G	675.43	PASS	AC=1;AF=0.648;AN=2;DP=2872;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,38:86:99:911,0,1326:19,29,18,20
chr2	132287824	.	C	T	7163.88	PASS	AC=1;AF=0.648;AN=2;DP=9616;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:139,124:263:99:2896,0,3736:71,68,73,51
chr2	132288102	.	T	C	1186.47	PASS	AC=1;AF=0.722;AN=2;DP=1873;FractionInformativeReads=1;set=variant-variant6-filterInvariant9-filterInvariant10-filterInvariant12-variant15-variant17-variant18-variant20-filterInvariant25-variant31-variant33-variant35-filterInvariant37-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:140,15:155:60:60,0,3612:63,77,0,15
chr2	132290399	.	G	A	7184	PASS	AC=1;AF=0.648;AN=2;DP=6142;set=variant-variant2-variant3-variant6-variant9-variant10-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant24-variant25-variant26-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:104,112:216:99:3131,0,2540:51,53,54,58
chr2	132291070	.	A	G	1046.83	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0;FractionInformativeReads=1;MQ=58.76;MQRankSum=1.628;QD=15.62;ReadPosRankSum=-0.572;SOR=0.589;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,36:67:99:1075,0,979:7,24,9,27
chr2	132349509	.	G	T	4121.13	PASS	AC=1;AF=0.613;AN=2;DP=5370;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,73:154:99:1900,0,2041:42,39,29,44
chr2	132349648	.	T	G	3431.02	PASS	AC=1;AF=0.597;AN=2;DP=3186;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,47:101:99:1251,0,1470:22,32,24,23
chr2	132354365	.	G	C	4213.77	PASS	AC=2;AF=1;AN=2;DP=6881;FS=0;MQRankSum=0.469;ReadPosRankSum=1.498;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5255,499,0:0,0,97,70
chr2	132354479	.	C	A	5919.73	PASS	AC=2;AF=1;AN=2;DP=9507;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,171:171:99:5281,511,0:0,0,81,90
chr2	132354586	.	A	G	5834.78	PASS	AC=2;AF=1;AN=2;DP=9011;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,189:190:99:6320,559,0:1,0,102,87
chr2	132354807	.	C	T	3946.51	PASS	AC=2;AF=1;AN=2;DP=5820;FS=0;MQRankSum=1.435;ReadPosRankSum=0.718;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4316,384,0:0,0,36,92
chr2	132354853	.	C	G	2121.15	PASS	AC=2;AF=1;AN=2;DP=2504;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1979,156,0:0,0,8,44
chr2	132357474	.	C	T	314.83	PASS	AC=2;AF=1;AN=2;DP=894;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1065,105,0:0,0,24,11
chr2	132357667	.	A	G	1153.34	PASS	AC=2;AF=1;AN=2;DP=1662;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1103,108,0:0,0,12,24
chr2	132361473	.	C	T	367.02	PASS	AC=1;AF=0.731;AN=2;DP=150;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:33:120,0,33:1,0,3,0
chr2	132361518	.	G	A	446.49	PASS	AC=2;AF=1;AN=2;DP=622;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:360,24,0:0,0,6,2
chr2	132361543	.	A	G	741.71	PASS	AC=2;AF=1;AN=2;DP=1025;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:523,39,0:0,0,9,4
chr2	132383729	.	T	C	4180.38	PASS	AC=1;AF=0.75;AN=2;DP=254;FS=0;FractionInformativeReads=1;MQRankSum=-7.034;ReadPosRankSum=0.422;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:67,55:122:99:1324,0,1845:34,33,28,27
chr2	132384011	.	G	A	8096.81	PASS	AC=1;AF=0.75;AN=2;DP=554;FS=0;MQRankSum=-0.369;ReadPosRankSum=0.696;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:138,150:288:99:3813,0,3380:82,56,89,61
chr2	132384137	.	A	C,G	2784.81	PASS	AC=0,1;AF=0.4,0.15;AN=2;DP=3624;set=variant-variant6-variant10-variant16-variant23-variant28-variant32-variant35-variant36-variant41	GT:DP:GQ:SB	0/2:336:99:76,95,80,85
chr2	132384339	.	C	T	1462.47	PASS	AC=1;AF=0.895;AN=2;DP=9776;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,101:193:99:2641,0,2650:46,46,50,51
chr2	132384381	.	G	A	5153.16	PASS	AC=1;AF=0.653;AN=2;DP=7363;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,91:180:99:2406,0,2232:45,44,47,44
chr2	132384588	.	C	G	5057.37	PASS	AC=1;AF=0.653;AN=2;DP=7388;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:104,78:182:99:1904,0,2705:47,57,37,41
chr2	132384682	.	T	C	4003.27	PASS	AC=2;AF=1;AN=2;DP=7005;FS=0;FractionInformativeReads=1;MQRankSum=-0.129;ReadPosRankSum=1.62;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,144:144:99:6398,433,0:0,0,64,80
chr2	132384683	.	T	G	4003.27	PASS	AC=2;AF=1;AN=2;DP=6897;FS=0;FractionInformativeReads=1;MQRankSum=-0.572;ReadPosRankSum=0.853;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,142:142:99:6398,433,0:0,0,63,79
chr2	132481803	.	G	C	632.45	PASS	AC=2;AF=0.607;AN=2;DP=258;FractionInformativeReads=1;set=variant2-variant5-variant9-variant12-variant13-variant21-variant29-variant30-variant31-variant32-variant34-variant38-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:713,75,0:0,0,11,14
chr2	132517068	.	A	G	268.36	PASS	AC=1;AF=0.708;AN=2;DP=968;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:374,0,324:9,5,9,5
chr2	132558335	.	G	T	3081.83	PASS	AC=1;AF=0.586;AN=2;DP=3144;set=variant2-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,59:117:99:1663,0,1647:44,14,45,14
chr2	132591648	.	C	T	234.51	PASS	AC=1;AF=0.526;AN=2;DP=1013;set=variant-variant6-variant7-variant10-variant13-variant16-variant17-variant23-variant26-variant28-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:1054,0,1022:21,12,25,9
chr2	132591957	.	C	T,G	2375.87	PASS	AC=1,0;AF=0.5,0.083;AN=2;DP=1425;set=variant6-variant10-variant13-variant34-variant39-variant41	GT:DP:GQ:SB	0/1:238:99:50,58,63,67
chr2	132592178	.	T	C	1927.88	PASS	AC=2;AF=0.661;AN=2;DP=7513;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant16-variant17-variant21-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,228:228:99:6915,683,0:0,0,105,123
chr2	132593636	.	C	T	1376.93	PASS	AC=1;AF=0.62;AN=2;DP=3705;set=variant-variant2-variant5-variant7-variant9-variant12-variant13-variant16-variant17-variant21-variant23-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,72:145:99:1756,0,2004:38,35,40,32
chr2	132594052	.	G	A	2018.59	PASS	AC=1;AF=0.5;AN=2;DP=818;set=variant6-variant10-variant13-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:94,89:183:99:1956,0,2196:44,50,43,46
chr2	132594079	.	C	A	1188.74	PASS	AC=2;AF=0.737;AN=2;DP=5125;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,169:169:99:4980,505,0:0,0,68,101
chr2	132905664	.	G	T	838.04	PASS	AC=1;AF=0.5;AN=2;DP=2354;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,22:59:99:851,0,1566:25,12,13,9
chr2	132905682	.	T	C	975.9	PASS	AC=1;AF=0.5;AN=2;DP=3128;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,29:79:99:1106,0,2090:33,17,15,14
chr2	132905693	.	T	C	957.84	PASS	AC=1;AF=0.5;AN=2;DP=3545;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,32:91:99:1163,0,2482:37,22,15,17
chr2	132905703	.	C	G	945.8	PASS	AC=1;AF=0.5;AN=2;DP=3851;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,32:97:99:1145,0,2734:41,24,15,17
chr2	132905706	.	A	G	939.81	PASS	AC=1;AF=0.5;AN=2;DP=3933;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,32:98:99:1145,0,2734:40,26,15,17
chr2	132905741	.	G	A	872.33	PASS	AC=1;AF=0.5;AN=2;DP=4631;set=variant-variant3-variant5-variant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant15-filterInvariant16-variant18-variant19-variant20-variant21-variant22-variant23-filterInvariant24-variant25-variant26-filterInvariant27-filterInvariant28-variant29-variant30-variant31-variant32-variant33-filterInvariant34-variant35-variant36-variant37-variant38-filterInvariant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,32:112:99:1103,0,3059:44,36,15,17
chr2	132905792	.	G	C	401.57	PASS	AC=1;AF=0.5;AN=2;DP=3910;set=variant-variant2-variant3-filterInvariant4-filterInvariant5-variant6-variant7-filterInvariant8-variant9-variant10-variant12-variant13-variant14-variant15-variant18-variant19-variant20-filterInvariant21-variant22-variant23-filterInvariant24-variant25-variant26-filterInvariant27-variant29-variant30-filterInvariant31-variant32-filterInvariant34-variant35-variant37-filterInvariant38-filterInvariant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:77,23:100:99:527,0,2783:34,43,7,16
chr2	132905814	.	G	C	52.14	PASS	AC=1;AF=0.5;AN=2;DP=2019;FractionInformativeReads=1;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant6-filterInvariant7-filterInvariant9-variant10-variant13-variant14-variant15-variant18-filterInvariant19-filterInvariant20-variant23-variant25-variant26-filterInvariant30-filterInvariant35-variant37-filterInvariant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,8:64:99:180,0,2385:22,34,1,7
chr2	132905819	.	T	A	31.05	PASS	AC=1;AF=0.5;AN=2;DP=1504;FractionInformativeReads=1;set=filterInvariant2-filterInvariant4-filterInvariant6-filterInvariant9-variant10-variant14-variant15-variant18-filterInvariant19-filterInvariant20-variant23-filterInvariant25-variant26-filterInvariant30-variant35-variant37-filterInvariant38-variant40-filterInvariant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:53,6:59:99:131,0,2236:20,33,1,5
chr2	132911348	.	C	T	314.84	PASS	AC=1;AF=0.556;AN=2;DP=128;FractionInformativeReads=1;set=variant6-variant10-variant11-variant13-variant22-variant35-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:184,0,114:1,3,0,5
chr2	132914520	.	T	G	183.52	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=113;FS=0.934;FractionInformativeReads=1;MQ=44.1;MQRankSum=-3.093;QD=1.62;ReadPosRankSum=-0.663;SOR=0.501;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:91,22:113:99:212,0,2306:58,33,13,9
chr2	132914561	.	G	A	1013.9	PASS	AC=1;AF=0.5;AN=2;DP=6910;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:77,87:164:99:1636,0,1742:40,37,44,43
chr2	132914587	.	T	C	193.55	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=157;FS=0.781;FractionInformativeReads=1;MQ=42.13;MQRankSum=-3.533;QD=1.23;ReadPosRankSum=-0.814;SOR=0.565;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:129,28:157:99:222,0,3045:60,69,14,14
chr2	133014497	.	G	C	607.18	PASS	AC=1;AF=0.5;AN=2;DP=4478;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:52,29:81:99:1095,0,2115:32,20,18,11
chr2	133014504	.	G	T	631.11	PASS	AC=1;AF=0.5;AN=2;DP=4810;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:55,30:85:99:1083,0,2275:35,20,19,11
chr2	133014510	.	T	C	638.29	PASS	AC=1;AF=0.5;AN=2;DP=5173;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:62,33:95:99:1140,0,2279:39,23,20,13
chr2	133014552	.	C	T	165.34	PASS	AC=1;AF=0.5;AN=2;DP=7442;set=filterInvariant-filterInvariant2-variant3-variant4-filterInvariant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-filterInvariant16-variant18-variant19-filterInvariant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant29-variant32-variant33-variant34-variant37-filterInvariant38-filterInvariant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:137,31:168:99:476,0,4690:89,48,16,15
chr2	133014592	.	G	A	613.02	PASS	AC=1;AF=0.5;AN=2;DP=13702;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:213,69:282:99:1300,0,8395:135,78,43,26
chr2	133014602	.	G	C	4820.71	PASS	AC=1;AF=0.5;AN=2;DP=14938;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:125,191:316:99:7943,0,4539:75,50,115,76
chr2	133014612	.	A	C	5028.35	PASS	AC=1;AF=0.5;AN=2;DP=16029;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:124,218:342:99:8636,0,4494:72,52,128,90
chr2	133014619	.	C	T	1859.52	PASS	AC=1;AF=0.5;AN=2;DP=16976;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:261,108:369:99:3777,0,11119:152,109,61,47
chr2	133014640	.	C	T	2539.17	PASS	AC=1;AF=0.5;AN=2;DP=19084;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:287,124:411:99:4201,0,12069:161,126,69,55
chr2	133014651	.	A	AC	6280.36	PASS	AC=1;AF=0.5;AN=2;DP=20068;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:159,272:431:99:9666,0,4342:85,74,149,123
chr2	133014657	.	G	A	2611.92	PASS	AC=1;AF=0.5;AN=2;DP=20727;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-filterInvariant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-filterInvariant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:316,136:452:99:4534,0,12680:169,147,77,59
chr2	133014678	.	A	G	7409.48	PASS	AC=1;AF=0.5;AN=2;DP=21102;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:158,305:463:99:12031,0,5147:73,85,161,144
chr2	133014703	.	T	C	7910.09	PASS	AC=1;AF=0.5;AN=2;DP=21571;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:143,307:450:99:12073,0,5988:58,85,142,165
chr2	133014721	.	T	C	7339.97	PASS	AC=1;AF=0.5;AN=2;DP=21946;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:139,308:447:99:11992,0,5774:54,85,131,177
chr2	133014751	.	T	C	2894.76	PASS	AC=1;AF=0.5;AN=2;DP=20261;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:284,124:408:99:4210,0,13291:119,165,56,68
chr2	133014776	.	C	T	3094.95	PASS	AC=1;AF=0.5;AN=2;DP=18499;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:264,114:378:99:3947,0,13005:114,150,50,64
chr2	133014777	.	A	G	3094.95	PASS	AC=1;AF=0.5;AN=2;DP=18400;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:263,113:376:99:3953,0,12962:113,150,50,63
chr2	133014786	.	G	A	2727.12	PASS	AC=1;AF=0.5;AN=2;DP=17554;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:224,135:359:99:4725,0,10184:98,126,57,78
chr2	133074745	.	A	T	1931.07	PASS	AC=1;AF=0.5;AN=2;DP=3877;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,48:74:99:1231,0,543:14,12,29,19
chr2	133074759	.	A	C	1959.58	PASS	AC=1;AF=0.5;AN=2;DP=3918;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:25,46:71:99:1238,0,515:14,11,27,19
chr2	133074851	.	A	T	1971.29	PASS	AC=1;AF=0.5;AN=2;DP=4991;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,60:105:99:1750,0,1250:30,15,38,22
chr2	133074876	.	A	G	1920.16	PASS	AC=1;AF=0.5;AN=2;DP=5751;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:57,68:125:99:1782,0,1587:38,19,38,30
chr2	133075027	.	G	A	2482.67	PASS	AC=1;AF=0.5;AN=2;DP=8681;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:95,108:203:99:2630,0,2409:45,50,55,53
chr2	133174764	.	C	T	2320.44	PASS	AC=1;AF=0.583;AN=2;DP=4821;MQ=60;set=variant6-variant7-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant27-variant29-variant30-variant32-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,82:163:99:2199,0,2102:42,39,37,45
chr2	133174999	.	A	G	2569.14	PASS	AC=1;AF=0.58;AN=2;DP=5421;MQ=60;set=variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant22-variant23-variant24-variant27-variant29-variant30-variant32-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:93,100:193:99:2589,0,2288:44,49,54,46
chr2	133175524	.	G	A	991.61	PASS	AC=1;AF=0.5;AN=2;DP=806;MQ=60;set=variant15-variant19-variant24-variant29-variant30-variant32-variant35-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:23,41:64:99:1044,0,558:7,16,16,25
chr2	133402607	.	C	T	2409.51	PASS	AC=1;AF=0.63;AN=2;DP=3094;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant8-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:63,45:108:99:1086,0,1576:30,33,19,26
chr2	133403433	.	G	A	1929.59	PASS	AC=1;AF=0.648;AN=2;DP=1448;MQ=60;set=variant2-variant3-variant6-variant8-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,24:50:99:685,0,606:12,14,7,17
chr2	133404223	.	C	A	1318.72	PASS	AC=1;AF=0.759;AN=2;DP=1336;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant23-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:565,0,613:5,15,4,12
chr2	133429918	.	T	C	1387.61	PASS	AC=1;AF=0.5;AN=2;DP=222;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,49:86:99:1233,0,860:17,20,20,29
chr2	133430502	.	T	TTTA	2022.08	PASS	AC=1;AF=0.5;AN=2;DP=158;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,42:64:99:1815,0,817:14,8,29,13
chr2	133430536	.	AC	A,CC	952.25	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=117;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	1/2:7,18,16:41:99:830,309,428,366,0,1088:1,6,16,18
chr2	133430543	.	A	C	579.12	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=127;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:32,12:44:99:331,0,1647:6,26,12,0
chr2	133430547	.	A	C	499.3	PASS	AC=1;AF=0.5;AN=2;DP=143;set=filterInvariant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,9:53:99:300,0,2034:16,28,9,0
chr2	133430548	.	T	C	399.19	PASS	AC=1;AF=0.5;AN=2;DP=140;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,8:54:99:271,0,1995:17,29,8,0
chr2	133472385	.	CAA	CA,C	104.29	PASS	AC=1,0;AF=0.457,0.129;AN=2;DP=846;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:12:94:3,3,5,1
chr2	133489334	.	G	A	3106.1	PASS	AC=1;AF=0.5;AN=2;DP=654;FractionInformativeReads=1;MQ=60;set=variant10-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:109,108:217:99:2745,0,2815:56,53,51,57
chr2	133539460	.	A	T	394.59	PASS	AC=1;AF=0.714;AN=2;DP=551;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:348,0,265:8,1,9,0
chr2	133539566	.	G	A	2601.97	PASS	AC=1;AF=0.708;AN=2;DP=2341;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,27:43:99:741,0,453:8,8,17,10
chr2	133541444	.	T	C	6722.15	PASS	AC=1;AF=0.718;AN=2;DP=6312;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,70:146:99:2631,0,4497:42,34,40,30
chr2	133541454	.	A	G	6714.49	PASS	AC=1;AF=0.711;AN=2;DP=6489;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:84,71:155:99:2605,0,4721:45,39,41,30
chr2	133541575	.	C	T	4478.73	PASS	AC=1;AF=0.571;AN=2;DP=4527;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant21-variant22-variant23-variant25-variant26-variant28-variant31-variant32-variant34-variant35-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:91,83:174:99:1929,0,2365:44,47,37,46
chr2	133542014	.	T	C	3129.64	PASS	AC=1;AF=0.724;AN=2;DP=3317;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,46:82:99:1268,0,775:16,20,24,22
chr2	133542545	.	G	A	5358.01	PASS	AC=1;AF=0.574;AN=2;DP=4496;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant21-variant22-variant23-variant25-variant28-variant31-variant32-variant34-variant35-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,89:150:99:2278,0,1501:29,32,48,41
chr2	133547538	.	C	G	327.81	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=4.298;FractionInformativeReads=1;MQ=60;MQRankSum=0.689;QD=10.93;ReadPosRankSum=-1.764;SOR=1.765;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,11:30:99:356,0,598:14,5,10,1
chr2	133554288	.	A	G	1943.11	PASS	AC=1;AF=0.724;AN=2;DP=2525;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,22:48:99:544,0,808:11,15,9,13
chr2	133636209	.	ACACACACACACACACACACG	A	410.95	PASS	AC=1;AF=0.542;AN=2;DP=349;set=variant5-variant8-variant9-variant13-variant14-variant16-variant19-filterInvariant21-variant22-variant24-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,7:21:99:236,0,487:10,4,7,0
chr2	133683658	.	G	T	1187.68	PASS	AC=1;AF=0.808;AN=2;DP=1965;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,17:41:99:416,0,664:11,13,10,7
chr2	133879915	.	A	G	1340.14	PASS	AC=1;AF=0.571;AN=2;DP=3490;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant11-variant12-variant14-variant15-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,51:86:99:1457,0,966:19,16,28,23
chr2	134060719	.	T	C	2266.03	PASS	AC=1;AF=0.571;AN=2;DP=692;FractionInformativeReads=1;MQ=60;set=variant-variant6-variant17-variant27-variant31-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,45:89:99:1085,0,1119:17,27,20,25
chr2	134274912	.	C	T	353.38	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.106;QD=16.83;ReadPosRankSum=1.655;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:382,0,325:9,1,9,2
chr2	134316522	.	C	A	276.63	PASS	AC=1;AF=0.56;AN=2;DP=425;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant12-variant14-variant17-variant18-variant19-variant21-variant22-variant24-variant28-variant29-variant31-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:190,0,431:11,4,6,0
chr2	134316603	.	C	T	1220.23	PASS	AC=1;AF=0.558;AN=2;DP=3016;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant12-variant14-variant17-variant18-variant19-variant21-variant22-variant24-variant27-variant28-variant29-variant31-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,48:97:99:1187,0,1258:31,18,31,17
chr2	134325809	.	C	T	349.82	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.101;QD=8.33;ReadPosRankSum=-2.502;SOR=0.724;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,19:42:99:378,0,666:11,12,10,9
chr2	134884700	.	G	A	981.64	PASS	AC=2;AF=0.646;AN=2;DP=2772;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant13-variant14-variant15-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant32-variant35-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,115:116:99:3415,309,0:1,0,66,49
chr2	135076111	.	C	G	471.22	PASS	AC=2;AF=0.966;AN=2;DP=503;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:438,36,0:0,0,10,2
chr2	135096097	.	T	C	724.18	PASS	AC=2;AF=0.966;AN=2;DP=930;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:527,48,0:0,0,3,13
chr2	135120034	.	A	C	263.98	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.959;QD=6.6;ReadPosRankSum=-0.959;SOR=0.735;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,12:40:99:292,0,834:10,18,4,8
chr2	135160755	.	G	A	1261.94	PASS	AC=1;AF=0.63;AN=2;DP=3044;MQ=60;set=variant2-variant3-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant29-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:61,55:116:99:1330,0,1462:29,32,26,29
chr2	135170699	.	A	G	295.42	PASS	AC=1;AF=0.65;AN=2;DP=133;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant7-variant12-variant19-variant20-variant28-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:373,0,295:1,8,0,10
chr2	135180550	.	C	T	719.3	PASS	AC=1;AF=0.625;AN=2;DP=163;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:395,0,465:2,12,2,10
chr2	135199030	.	G	A	51.2	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,9:11:16:242,0,16:1,1,6,3
chr2	135206618	.	G	A	1074.39	PASS	AC=1;AF=0.5;AN=2;DP=452;MQ=60;set=variant11-variant16-variant32-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,40:74:99:940,0,901:16,18,15,25
chr2	135206934	.	C	T	1332.75	PASS	AC=1;AF=0.773;AN=2;DP=1507;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,31:58:99:758,0,750:16,11,15,16
chr2	135208077	.	A	G	562.32	PASS	AC=1;AF=0.829;AN=2;DP=2498;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,17:45:99:417,0,630:15,13,7,10
chr2	135208213	.	A	G	524.38	PASS	AC=1;AF=0.829;AN=2;DP=1528;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:482,0,566:7,13,11,7
chr2	135208354	.	AGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT	AGTGTGTGTGTGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGTGTGT,AGTGTGTGTGTGTGT,AGTGTGTGTGTGTGTGTGT,A,AGTGTGTGTGTGTGTGT,AGTGT,AGTGTGTGTGT	40.34	PASS	AC=0,1,1,0,0,0,0,0,0,0;AF=0.159,0.366,0.085,0.037,0.012,0.049,0.061,0.012,0.012,0.012;AN=2;DP=1294;set=filterInvariant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/3:31:99:1,1,20,9
chr2	135209142	.	G	A	1234.59	PASS	AC=1;AF=0.795;AN=2;DP=2642;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,37:72:99:1136,0,992:26,9,22,15
chr2	135209154	.	A	G	2489.29	PASS	AC=1;AF=0.788;AN=2;DP=2495;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,45:81:99:1244,0,980:26,10,24,21
chr2	135209591	.	C	T	10418.6	PASS	AC=1;AF=0.788;AN=2;DP=10248;set=variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant25-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,120:260:99:3438,0,4067:48,92,38,82
chr2	135210390	.	A	G	2484.49	PASS	AC=1;AF=0.692;AN=2;DP=1924;MQ=60;set=variant-variant10-variant12-variant13-variant19-variant20-variant24-variant26-variant28-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:71,81:152:99:2004,0,1872:40,31,46,35
chr2	135211544	.	A	T	885.21	PASS	AC=1;AF=0.583;AN=2;DP=757;FractionInformativeReads=1;set=variant-variant10-variant12-variant16-variant19-variant20-variant24-variant28-variant34-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:39,24:63:99:475,0,1187:23,16,11,13
chr2	135212329	.	G	T	51.2	PASS	AC=1;AF=0.75;AN=2;DP=149;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant33-variant34-variant37-variant38-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,6:9:82:196,0,82:0,3,1,5
chr2	135214017	.	C	A	867.09	PASS	AC=1;AF=0.5;AN=2;DP=406;FractionInformativeReads=1;MQ=60;set=variant11-variant25-variant32-variant35-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,26:58:99:671,0,1241:18,14,11,15
chr2	135214034	.	T	TA	1440.64	PASS	AC=1;AF=0.559;AN=2;DP=1113;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant16-variant17-variant19-variant24-variant25-variant28-variant34-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,32:55:99:1264,0,933:9,14,17,15
chr2	135214042	.	G	A	1449.7	PASS	AC=1;AF=0.559;AN=2;DP=1103;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant10-variant11-variant16-variant17-variant19-variant24-variant25-variant28-variant34-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,33:56:99:1292,0,866:9,14,17,16
chr2	135214570	.	C	T	754.42	PASS	AC=1;AF=0.6;AN=2;DP=247;FractionInformativeReads=1;MQ=60;set=variant24-variant28-variant34-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:36,28:64:99:694,0,982:12,24,10,18
chr2	135223497	.	C	A	308.78	PASS	AC=1;AF=0.5;AN=2;DP=184;FractionInformativeReads=1;MQ=60;set=variant15-variant19-variant20-variant28-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:110,0,292:7,1,4,1
chr2	135308431	.	A	G	396.58	PASS	AC=1;AF=0.682;AN=2;DP=365;MQ=60;set=variant5-variant6-variant7-variant11-variant12-variant13-variant14-variant18-variant19-variant27-variant28-variant30-variant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:405,0,198:0,6,1,11
chr2	135470735	.	A	T	502.26	PASS	AC=1;AF=0.563;AN=2;DP=557;MQ=60;set=variant2-variant5-variant7-variant12-variant13-variant16-variant17-variant20-variant23-variant25-variant28-variant29-variant30-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,18:44:99:584,0,785:19,7,17,1
chr2	135471290	.	T	C	594.13	PASS	AC=2;AF=0.594;AN=2;DP=633;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant7-variant12-variant13-variant16-variant17-variant20-variant23-variant25-variant28-variant29-variant30-variant35-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1408,117,0:0,0,9,30
chr2	135476253	.	G	A	365.58	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.366;QD=13.54;ReadPosRankSum=2.171;SOR=0.877;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:394,0,822:8,7,7,5
chr2	135476270	.	C	T	557.99	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=1.365;FractionInformativeReads=1;MQ=60;MQRankSum=0.936;QD=16.41;ReadPosRankSum=-1.422;SOR=0.943;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:586,0,779:7,8,11,8
chr2	135595968	.	GTTTT	G	40.69	PASS	AC=1;AF=0.6;AN=2;DP=111;MQ=60;set=variant2-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant23-variant25-variant28-variant29-variant33-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:183,0,456:6,3,5,0
chr2	135602156	.	G	A	140.08	PASS	AC=1;AF=0.766;AN=2;DP=193;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:74:95,0,74:0,2,1,3
chr2	135602601	.	T	A	471.95	PASS	AC=2;AF=0.803;AN=2;DP=1728;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:1190,98,0:0,0,27,6
chr2	135602931	.	G	A	1169.25	PASS	AC=1;AF=0.5;AN=2;DP=474;FractionInformativeReads=1;MQ=60;set=variant4-variant9-variant25-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:64,47:111:99:1193,0,1822:23,41,16,31
chr2	135617133	.	C	T	429.44	PASS	AC=1;AF=0.5;AN=2;DP=138;MQ=60;set=variant4-variant9-variant25-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:375,0,410:1,11,3,10
chr2	135629927	.	C	T	678.65	PASS	AC=2;AF=0.803;AN=2;DP=2410;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2230,204,0:0,0,44,24
chr2	135676246	.	G	C	505.08	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.215;QD=11.22;ReadPosRankSum=-1.692;SOR=0.818;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:533,0,575:15,8,15,7
chr2	135676647	.	C	T	1019.23	PASS	AC=1;AF=0.5;AN=2;DP=327;MQ=60;set=variant4-variant9-variant25-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,30:54:99:912,0,672:5,19,7,23
chr2	135677211	.	A	G	234.11	PASS	AC=1;AF=0.5;AN=2;DP=121;MQ=60;set=variant4-variant9-variant25-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:295,0,361:9,7,8,5
chr2	135677268	.	G	A	624.96	PASS	AC=2;AF=0.672;AN=2;DP=1322;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,40:41:99:1244,111,0:1,0,22,18
chr2	135677471	.	A	AGTTT	1181.98	PASS	AC=2;AF=0.672;AN=2;DP=2199;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:3032,207,0:0,0,33,34
chr2	135694354	.	G	C	485.96	PASS	AC=2;AF=0.679;AN=2;DP=785;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant23-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1578,117,0:0,0,23,13
chr2	135694379	.	C	T	386.35	PASS	AC=2;AF=0.803;AN=2;DP=1547;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1904,138,0:0,0,29,17
chr2	135700151	.	A	T	588.7	PASS	AC=2;AF=0.672;AN=2;DP=2910;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,85:85:99:2468,254,0:0,0,52,33
chr2	135703338	.	CT	C	1295.87	PASS	AC=2;AF=0.672;AN=2;DP=2244;MQ=60;set=variant2-variant4-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2016,213,0:0,0,47,24
chr2	135705558	.	G	A	823.62	PASS	AC=2;AF=0.825;AN=2;DP=2746;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2523,233,0:0,0,32,46
chr2	135710322	.	A	G	1391.38	PASS	AC=2;AF=0.803;AN=2;DP=4437;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,98:98:99:3018,294,0:0,0,49,49
chr2	135711516	.	C	T	693.66	PASS	AC=2;AF=0.803;AN=2;DP=2350;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1566,147,0:0,0,26,23
chr2	135711657	.	G	A	902.82	PASS	AC=2;AF=0.803;AN=2;DP=4490;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3454,348,0:0,0,61,55
chr2	135713385	.	TAAAA	T	1235.29	PASS	AC=1;AF=0.589;AN=2;DP=2541;MQ=60;set=variant2-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:1632,0,1887:14,28,12,31
chr2	135713703	.	G	A	3846.73	PASS	AC=2;AF=0.803;AN=2;DP=9640;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:6467,603,0:0,0,102,99
chr2	135715169	.	T	G	3843.22	PASS	AC=1;AF=0.587;AN=2;DP=4040;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant19-variant20-variant23-variant24-variant25-variant26-variant29-variant33-variant34-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:66,87:153:99:2809,0,1819:27,39,26,61
chr2	135715174	.	TC	T	3740.66	PASS	AC=2;AF=0.803;AN=2;DP=6210;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:6286,442,0:0,0,48,98
chr2	135715465	.	ATAAT	A	4475.01	PASS	AC=2;AF=0.803;AN=2;DP=9176;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,228:229:99:10138,679,0:1,0,127,101
chr2	135715957	.	A	G	1666.38	PASS	AC=2;AF=0.803;AN=2;DP=4312;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,120:121:99:4357,328,0:1,0,29,91
chr2	135716598	.	T	C	2621.68	PASS	AC=1;AF=0.587;AN=2;DP=5541;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant13-variant14-variant19-variant20-variant23-variant24-variant25-variant26-variant29-variant33-variant34-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:111,96:207:99:2381,0,3014:56,55,45,51
chr2	135722143	.	A	C	1363.71	PASS	AC=2;AF=0.789;AN=2;DP=4601;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,118:119:99:3501,347,0:0,1,67,51
chr2	135740876	.	A	G	1485.41	PASS	AC=1;AF=0.58;AN=2;DP=2748;set=variant2-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,49:110:99:1379,0,1626:25,36,21,28
chr2	135741061	.	G	A	394.47	PASS	AC=1;AF=0.615;AN=2;DP=729;MQ=60;set=variant2-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,14:29:99:502,0,423:6,9,3,11
chr2	135745392	.	G	A	1400.27	PASS	AC=1;AF=0.577;AN=2;DP=1953;MQ=60;set=variant2-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,27:66:99:757,0,1173:18,21,11,16
chr2	135745545	.	C	T	1250.61	PASS	AC=1;AF=0.615;AN=2;DP=2298;set=variant2-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,36:90:99:927,0,1429:28,26,22,14
chr2	135745722	.	A	G	1408.69	PASS	AC=1;AF=0.615;AN=2;DP=3042;MQ=60;set=variant2-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,51:89:99:1375,0,963:19,19,23,28
chr2	135748872	.	AAAAAC	A,AAAAACAAAACAAAAC,AAAAACAAAAC	507.93	PASS	AC=1,0,0;AF=0.577,0.019,0.019;AN=2;DP=887;set=variant2-variant6-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant23-variant28-variant30-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:18:99:7,2,6,3
chr2	135756265	.	G	T	153.01	PASS	AC=1;AF=0.571;AN=2;DP=85;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant13-variant17-variant24-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,11:14:91:409,0,91:3,0,9,2
chr2	135779588	.	G	A	858.84	PASS	AC=2;AF=0.528;AN=2;DP=642;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant26-variant28-variant29-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1418,105,0:0,0,2,33
chr2	135781035	.	C	T	1059.09	PASS	AC=1;AF=0.5;AN=2;DP=1275;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant18-variant20-variant26-variant28-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:47,31:78:99:794,0,1250:28,19,19,12
chr2	135781301	.	A	T	685.85	PASS	AC=2;AF=0.526;AN=2;DP=979;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant22-variant26-variant28-variant29-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1520,132,0:0,0,17,27
chr2	135781913	.	A	ACTATAAGTC	876.74	PASS	AC=2;AF=0.526;AN=2;DP=874;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant22-variant26-variant28-variant29-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:2236,153,0:0,0,32,12
chr2	135809731	.	TA	T	187.2	PASS	AC=1;AF=0.5;AN=2;DP=120;FractionInformativeReads=1;MQ=60;set=variant17-variant22-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,17:31:99:544,0,430:11,3,13,4
chr2	135888078	.	G	T	107.47	PASS	AC=1;AF=0.5;AN=2;DP=29;FractionInformativeReads=1;MQ=60;set=variant17-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:62:62,0,80:2,1,2,0
chr2	135890608	.	G	C	484.55	PASS	AC=1;AF=0.5;AN=2;DP=397;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant18-variant20-variant26-variant28-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,16:30:99:542,0,432:2,12,3,13
chr2	135907846	.	T	C	803.45	PASS	AC=1;AF=0.5;AN=2;DP=225;FractionInformativeReads=1;MQ=60;set=variant12-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,35:65:99:903,0,776:21,9,24,11
chr2	135911422	.	T	C	1360.96	PASS	AC=2;AF=0.667;AN=2;DP=3413;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3403,330,0:0,0,47,63
chr2	135920091	.	C	T	563.56	PASS	AC=1;AF=0.5;AN=2;DP=249;MQ=60;set=variant17-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,41:86:99:1051,0,1118:26,19,25,16
chr2	135925453	.	T	C	591.22	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0;FractionInformativeReads=0.937;MQ=60;MQRankSum=-0.872;QD=9.38;ReadPosRankSum=-0.28;SOR=0.648;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,29:59:99:619,0,761:9,21,9,20
chr2	135926606	.	T	TG	507.83	PASS	AC=1;AF=0.5;AN=2;DP=348;MQ=60;set=variant17-variant29-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,34:66:99:841,0,780:30,2,33,1
chr2	135927544	.	TAA	TA,T	144.93	PASS	AC=2,0;AF=0.556,0.083;AN=2;DP=204;MQ=60;set=variant5-variant6-variant8-variant10-variant12-variant16-variant18-variant19-variant20-variant26-variant27-variant29-variant31-variant33-variant34-variant36-variant41-variant44	GT:DP:GQ:SB	1/1:6:18:0,0,2,4
chr2	135928312	.	A	G	49.73	PASS	AC=2;AF=0.533;AN=2;DP=78;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant18-variant22-variant26-variant28-variant29-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,1,4
chr2	135954501	.	G	C	206.45	PASS	AC=1;AF=0.5;AN=2;DP=176;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant10-variant12-variant14-variant16-variant18-variant20-variant24-variant26-variant28-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,4:5:30:147,0,30:1,0,3,1
chr2	135954531	.	G	A	53.42	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.566;QD=4.86;ReadPosRankSum=0.978;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,3:11:82:82,0,290:7,1,3,0
chr2	135954797	.	T	C	1359.31	PASS	AC=2;AF=0.788;AN=2;DP=4417;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:4153,375,0:0,0,53,72
chr2	135956745	.	G	A	1007.92	PASS	AC=2;AF=0.526;AN=2;DP=1179;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant24-variant26-variant28-variant29-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2134,210,0:0,0,29,41
chr2	135956865	.	T	TG	602.71	PASS	AC=1;AF=0.5;AN=2;DP=299;MQ=60;set=variant-variant6-variant10-variant14-variant20-variant24-variant26-variant28-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,8:18:99:263,0,269:4,6,2,6
chr2	135957159	.	C	T	731.03	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=9.935;FractionInformativeReads=1;MQ=60;MQRankSum=-0.687;QD=12.6;ReadPosRankSum=-1.318;SOR=2.272;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:759,0,1028:25,9,22,2
chr2	135965376	.	T	C	1035.45	PASS	AC=1;AF=0.5;AN=2;DP=1285;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant24-variant26-variant28-variant29-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:44,30:74:99:700,0,1210:16,28,13,17
chr2	135985564	.	T	C	685.2	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=0;FractionInformativeReads=0.984;MQ=60;MQRankSum=0.809;QD=10.71;ReadPosRankSum=-1.736;SOR=0.629;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:35,28:63:99:713,0,925:12,23,10,18
chr2	135988127	.	T	A	1631.58	PASS	AC=2;AF=0.526;AN=2;DP=2876;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant24-variant26-variant28-variant29-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4974,466,0:0,0,80,76
chr2	135988186	.	G	A	1811.1	PASS	AC=1;AF=0.5;AN=2;DP=2607;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant18-variant20-variant24-variant26-variant28-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:84,83:167:99:2228,0,2175:42,42,39,44
chr2	135988235	.	C	T	1917.72	PASS	AC=1;AF=0.5;AN=2;DP=733;MQ=60;set=variant12-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:97,86:183:99:2231,0,2549:53,44,43,43
chr2	135988282	.	G	A	2938.39	PASS	AC=1;AF=0.5;AN=2;DP=211;FS=2.38;FractionInformativeReads=1;MQ=60;MQRankSum=-1.212;QD=13.93;ReadPosRankSum=2.644;SOR=0.884;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:91,120:211:99:2967,0,2175:45,46,54,66
chr2	135988416	.	C	T	1715.82	PASS	AC=1;AF=0.5;AN=2;DP=2008;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant24-variant26-variant28-variant29-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:48,60:108:99:1634,0,1287:13,35,19,41
chr2	136026781	.	A	T	352.59	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.249;QD=16.79;ReadPosRankSum=1.883;SOR=0.509;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:381,0,334:1,8,2,10
chr2	136103038	.	CA	C,CAA	640.72	PASS	AC=1,1;AF=0.5,0.5;AN=2;DP=32;FS=0;FractionInformativeReads=0.906;MQ=60;QD=20.02;SOR=1.688;set=variant41	GT:AD:DP:GQ:PL:SB	1/2:0,11,18:29:99:678,449,578,302,0,330:0,0,20,9
chr2	136107512	.	C	T,G	557.54	PASS	AC=0,1;AF=0.1,0.4;AN=2;DP=341;FractionInformativeReads=1;MQ=60;set=variant11-variant12-variant33-variant41-variant42	GT:DP:GQ:SB	0/2:62:99:21,15,17,9
chr2	136107839	.	G	A	225.42	PASS	AC=2;AF=0.526;AN=2;DP=461;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant17-variant18-variant20-variant24-variant26-variant28-variant29-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:827,78,0:0,0,9,17
chr2	136148400	.	A	AT	189.55	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=0.846;MQ=60;MQRankSum=-0.278;QD=14.58;ReadPosRankSum=0.278;SOR=1.402;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:227,0,137:1,3,1,6
chr2	136148401	.	A	T	142.42	PASS	AC=1;AF=0.533;AN=2;DP=198;MQ=60;set=variant-variant5-variant6-variant10-variant16-variant17-variant20-variant24-variant26-variant28-variant29-variant33-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:137,0,272:1,6,1,3
chr2	136148402	.	A	T	142.42	PASS	AC=1;AF=0.542;AN=2;DP=143;MQ=60;set=variant-variant5-variant6-variant10-variant16-variant20-variant24-variant26-variant28-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:7,4:11:99:137,0,272:1,6,1,3
chr2	136288262	.	T	C	72.16	PASS	AC=1;AF=0.5;AN=2;DP=31;FS=1.643;FractionInformativeReads=1;MQ=60;MQRankSum=-0.449;QD=2.33;ReadPosRankSum=-0.591;SOR=0.832;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,7:31:99:100,0,615:11,13,4,3
chr2	136288273	.	C	T	344.83	PASS	AC=2;AF=0.528;AN=2;DP=473;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant10-variant12-variant14-variant16-variant17-variant18-variant24-variant26-variant28-variant29-variant33-variant34-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:814,81,0:0,0,12,15
chr2	136379194	.	GT	G	783.42	PASS	AC=2;AF=0.545;AN=2;DP=593;MQ=60;set=variant5-variant12-variant16-variant17-variant18-variant28-variant29-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1155,117,0:0,0,14,25
chr2	136407479	.	A	G	1801.47	PASS	AC=2;AF=0.758;AN=2;DP=4546;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4663,408,0:0,0,87,49
chr2	136409574	.	A	C	835.78	PASS	AC=1;AF=0.556;AN=2;DP=657;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant16-variant18-variant28-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:26,41:67:99:1155,0,657:9,17,14,27
chr2	136418741	.	T	C	193.64	PASS	AC=1;AF=0.556;AN=2;DP=187;FractionInformativeReads=1;MQ=60;set=variant5-variant12-variant16-variant18-variant28-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:6,12:18:99:405,0,164:4,2,10,2
chr2	136466831	.	C	G	185.43	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=0;FractionInformativeReads=1;MQ=60;set=variant17-variant30-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:255,0,274:6,1,7,0
chr2	136467164	.	C	A	931.48	PASS	AC=2;AF=1;AN=2;DP=1378;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:98:1109,98,0:0,0,6,27
chr2	136499188	.	T	C	3175.02	PASS	AC=2;AF=1;AN=2;DP=5853;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:4819,478,0:0,0,89,71
chr2	136511874	.	C	T	480.88	PASS	AC=2;AF=0.625;AN=2;DP=160;FS=0;MQ=60;set=variant14-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1605,147,0:0,0,17,32
chr2	136511898	.	A	AT	179.26	PASS	AC=2;AF=0.583;AN=2;DP=147;MQ=60;set=variant14-variant28-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:535,60,0:0,0,4,16
chr2	136528224	.	A	G	959.61	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=1.025;FractionInformativeReads=1;MQ=60;MQRankSum=-0.483;QD=16.26;ReadPosRankSum=-2.177;SOR=0.563;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:21,38:59:99:988,0,519:13,8,22,16
chr2	136530248	.	G	A	161.27	PASS	AC=2;AF=0.625;AN=2;DP=61;FS=0;FractionInformativeReads=1;MQ=60;set=variant14-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:398,33,0:0,0,1,10
chr2	136541061	.	AT	A	2610.76	PASS	AC=2;AF=0.73;AN=2;DP=7927;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,158:160:99:4359,423,0:1,1,75,83
chr2	136541587	.	TTC	T	5100.88	PASS	AC=2;AF=0.625;AN=2;DP=1041;MQ=60;set=variant14-variant33-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,232:233:99:10263,685,0:1,0,90,142
chr2	136542427	.	T	TA	9007.2	PASS	AC=2;AF=1;AN=2;DP=10718;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,234:234:99:7646,716,0:0,0,127,107
chr2	136545844	.	C	G	340.87	PASS	AC=2;AF=0.737;AN=2;DP=2636;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2563,234,0:0,0,48,30
chr2	136548169	.	A	G	379.22	PASS	AC=2;AF=1;AN=2;DP=430;FS=0;MQ=60;MQRankSum=0;ReadPosRankSum=-0.869;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:370,33,0:0,0,8,3
chr2	136548192	.	G	A	484.91	PASS	AC=2;AF=1;AN=2;DP=635;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.639;ReadPosRankSum=1.369;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:415,36,0:0,0,7,5
chr2	136555484	.	T	C	1038.86	PASS	AC=2;AF=0.55;AN=2;DP=547;FractionInformativeReads=1;MQ=60;set=variant14-variant16-variant17-variant18-variant28-variant29-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1946,165,0:0,0,37,18
chr2	136561557	.	G	A	1614.79	PASS	AC=2;AF=0.716;AN=2;DP=4111;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3519,353,0:0,0,56,62
chr2	136562472	.	G	A	2776.92	PASS	AC=2;AF=0.583;AN=2;DP=1138;MQ=60;set=variant14-variant28-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,165:166:99:4880,450,0:1,0,90,75
chr2	136565028	.	C	G	1073.53	PASS	AC=2;AF=1;AN=2;DP=1614;FS=0;MQ=60;MQRankSum=-0.289;ReadPosRankSum=0.289;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1864,150,0:0,0,9,41
chr2	136570613	.	A	T	756.59	PASS	AC=2;AF=0.583;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant14-variant28-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:1,50:51:99:1641,111,0:0,1,18,32
chr2	136575534	.	T	C	2746.76	PASS	AC=2;AF=1;AN=2;DP=6825;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5103,500,0:0,0,79,88
chr2	136581354	.	T	G	107.99	PASS	AC=2;AF=1;AN=2;DP=248;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:424,30,0:0,0,10,0
chr2	136590558	.	C	T	204.37	PASS	AC=2;AF=0.583;AN=2;DP=194;FractionInformativeReads=1;MQ=60;set=variant14-variant28-variant33-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1244,120,0:0,0,21,19
chr2	136597793	.	TAAAAA	TAAAA,T,TAAA	40.6	PASS	AC=1,0,1;AF=0.429,0.071,0.071;AN=2;DP=137;MQ=60;set=variant14-variant28-variant29-variant33-variant40-variant41-variant42	GT:DP:GQ:SB	3/1:24:99:0,0,21,3
chr2	136622825	.	A	G	1396.47	PASS	AC=2;AF=1;AN=2;DP=1368;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1249,105,0:0,0,8,27
chr2	136633771	.	T	C	596.74	PASS	AC=2;AF=0.694;AN=2;DP=1547;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:1874,174,0:0,0,41,17
chr2	136664812	.	CTT	CT,CTTTTTTTTTTTTT,C,CTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTT,CTTTTTTTTTTTTTTTTT	776.31	PASS	AC=1,0,0,0,0,0,0;AF=0.364,0.061,0.045,0.015,0.061,0.03,0.015;AN=2;DP=2918;set=variant-variant3-variant4-variant5-variant7-variant8-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant18-filterInvariant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-filterInvariant36-variant37-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:58:99:10,15,13,20
chr2	136680363	.	T	C	1011.87	PASS	AC=1;AF=0.5;AN=2;DP=118;FS=0.686;FractionInformativeReads=1;MQ=60;MQRankSum=-1.304;QD=8.58;ReadPosRankSum=2.083;SOR=0.79;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,53:118:99:1040,0,1552:34,31,29,24
chr2	136690414	.	TA	T	686.85	PASS	AC=2;AF=0.661;AN=2;DP=1075;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-filterInvariant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:389,45,0:0,0,4,11
chr2	136740900	.	T	C	1123.26	PASS	AC=2;AF=0.694;AN=2;DP=1636;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1270,129,0:0,0,26,17
chr2	136742939	.	T	C	1221.07	PASS	AC=2;AF=0.75;AN=2;DP=147;FS=0;MQ=60;MQRankSum=-1.952;ReadPosRankSum=0.517;set=variant33-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2489,222,0:0,0,53,21
chr2	137523036	.	T	C	91.72	PASS	AC=1;AF=0.553;AN=2;DP=662;set=variant-variant2-variant3-variant5-variant6-variant8-variant11-variant14-variant16-variant19-variant20-variant25-variant28-variant30-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:179,0,186:5,4,5,4
chr2	137639616	.	C	T	377.42	PASS	AC=2;AF=1;AN=2;DP=588;FS=0;MQ=60;MQRankSum=1.239;ReadPosRankSum=-0.743;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:53:486,53,0:0,0,12,6
chr2	137640006	.	CTTT	CTT,C	358.97	PASS	AC=1,0;AF=0.833,0.026;AN=2;DP=599;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:15:99:1,6,1,7
chr2	137748575	.	A	G	461.52	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.498;QD=8.88;ReadPosRankSum=1.063;SOR=0.704;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,20:52:99:490,0,771:13,19,8,12
chr2	137814138	.	T	C	2292.81	PASS	AC=1;AF=0.5;AN=2;DP=1761;MQ=60;set=variant7-variant11-variant13-variant16-variant22-variant25-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:99,89:188:99:2290,0,2360:55,44,47,42
chr2	137814477	.	C	G	4457.54	PASS	AC=1;AF=0.625;AN=2;DP=3945;MQ=60;set=variant-variant6-variant7-variant9-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:74,70:144:99:1854,0,1822:36,38,26,44
chr2	137814804	.	G	A	981.16	PASS	AC=1;AF=0.5;AN=2;DP=648;FractionInformativeReads=1;MQ=60;set=variant7-variant11-variant13-variant16-variant22-variant25-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,27:52:99:717,0,647:7,18,8,19
chr2	137852698	.	C	T	758.53	PASS	AC=1;AF=0.545;AN=2;DP=732;FractionInformativeReads=1;MQ=60;set=variant7-variant14-variant17-variant22-variant25-variant29-variant33-variant34-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,26:68:99:550,0,1075:16,26,9,17
chr2	137917922	.	T	A	1044.42	PASS	AC=1;AF=0.657;AN=2;DP=3691;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:66,53:119:99:1207,0,1531:29,37,24,29
chr2	137990678	.	C	T	1382.75	PASS	AC=1;AF=0.5;AN=2;DP=228;MQ=60;set=variant16-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,49:111:99:1253,0,1973:14,48,14,35
chr2	138000226	.	T	C	2282.63	PASS	AC=2;AF=0.966;AN=2;DP=2195;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1604,147,0:0,0,18,31
chr2	138030271	.	G	A	860.27	PASS	AC=1;AF=0.742;AN=2;DP=1154;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,24:43:99:614,0,478:6,13,8,16
chr2	138163391	.	T	C	442.25	PASS	AC=2;AF=0.92;AN=2;DP=1742;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1491,126,0:0,0,11,31
chr2	138169158	.	T	C	1215.66	PASS	AC=2;AF=1;AN=2;DP=1634;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1415,117,0:0,0,31,8
chr2	138208631	.	G	T	630.95	PASS	AC=1;AF=0.7;AN=2;DP=2155;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:531,0,682:2,17,3,16
chr2	138237038	.	C	T	687.04	PASS	AC=2;AF=0.814;AN=2;DP=1890;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1402,126,0:0,0,30,12
chr2	138320764	.	AT	A	1172.03	PASS	AC=1;AF=0.5;AN=2;DP=136;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:900,0,631:18,6,19,12
chr2	138378351	.	AG	A	1206.41	PASS	AC=1;AF=0.65;AN=2;DP=1271;MQ=60;set=variant3-variant4-variant8-variant10-variant11-variant13-variant15-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant31-variant35-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,37:64:99:1301,0,894:7,20,15,22
chr2	138378388	.	A	G	499.83	PASS	AC=1;AF=0.65;AN=2;DP=733;MQ=60;set=variant3-variant4-variant8-variant10-variant11-variant13-variant15-variant18-variant19-variant21-variant24-variant26-variant27-variant28-variant31-variant35-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:563,0,451:4,11,3,16
chr2	138414230	.	T	C	417.08	PASS	AC=1;AF=0.5;AN=2;DP=41;FS=3.075;FractionInformativeReads=1;MQ=60;MQRankSum=0.771;QD=10.17;ReadPosRankSum=1.294;SOR=0.257;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,19:41:99:445,0,660:17,5,12,7
chr2	138420996	.	A	G	1327.45	PASS	AC=1;AF=0.671;AN=2;DP=3307;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,37:87:99:886,0,1208:29,21,20,17
chr2	138434663	.	T	C	11499.1	PASS	AC=2;AF=0.909;AN=2;DP=13566;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,269:269:99:8491,805,0:0,0,145,124
chr2	138435014	.	T	G	1724.62	PASS	AC=1;AF=0.78;AN=2;DP=4640;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,45:101:99:1253,0,1594:18,38,13,32
chr2	138721597	.	C	T	593.6	PASS	AC=2;AF=0.629;AN=2;DP=1746;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1621,161,0:0,0,29,25
chr2	138721942	.	ATTT	A,AT,ATTTT,ATT	1807.38	PASS	AC=0,0,0,1;AF=0.093,0.384,0.012,0.151;AN=2;DP=4428;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:87:99:35,18,20,14
chr2	138725002	.	C	T	156.22	PASS	AC=2;AF=1;AN=2;DP=564;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:448,39,0:0,0,3,10
chr2	138762851	.	G	A	385.4	PASS	AC=1;AF=0.5;AN=2;DP=88;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:605,0,578:4,15,2,16
chr2	138773638	.	C	T	5304.42	PASS	AC=1;AF=0.542;AN=2;DP=8896;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant20-variant23-variant24-variant27-variant28-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:145,142:287:99:3934,0,3996:80,65,77,65
chr2	138773752	.	T	C	5404.98	PASS	AC=1;AF=0.542;AN=2;DP=9284;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant14-variant20-variant23-variant24-variant27-variant28-variant32-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:185,168:353:99:4258,0,4899:92,93,85,83
chr2	139036688	.	C	G	445.34	PASS	AC=1;AF=0.743;AN=2;DP=2228;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,33:54:99:762,0,535:12,9,14,19
chr2	139045855	.	C	T	1840.87	PASS	AC=1;AF=0.563;AN=2;DP=1281;MQ=60;set=variant9-variant17-variant19-variant23-variant24-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:69,63:132:99:1676,0,1936:32,37,26,37
chr2	139045972	.	T	C	1242.62	PASS	AC=1;AF=0.708;AN=2;DP=5033;FractionInformativeReads=1;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:65,60:125:99:1598,0,1604:28,37,28,32
chr2	139045987	.	C	T	1671.54	PASS	AC=1;AF=0.563;AN=2;DP=1023;MQ=60;set=variant9-variant17-variant19-variant23-variant24-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:61,58:119:99:1441,0,1545:25,36,27,31
chr2	139046301	.	A	G	4933.16	PASS	AC=1;AF=0.708;AN=2;DP=14979;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:213,203:416:99:4872,0,5037:119,94,108,95
chr2	139046385	.	G	A	3208.13	PASS	AC=1;AF=0.708;AN=2;DP=10826;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:171,157:328:99:3828,0,4277:71,100,63,94
chr2	139259507	.	T	C	580.59	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=1.249;FractionInformativeReads=1;MQ=60;MQRankSum=-0.216;QD=13.82;ReadPosRankSum=3.215;SOR=0.431;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:609,0,430:12,6,14,10
chr2	139308397	.	TTC	TTCTCTCTC,T,TTCTCTCTCTC,TTCTC,TTCTCTC,TTCTCTCTCTCTC	2241.78	PASS	AC=0,0,1,0,0,0;AF=0.558,0.07,0.047,0.058,0.012,0.012;AN=2;DP=1871;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/3:24:99:5,10,6,3
chr2	139310358	.	T	C	121.69	PASS	AC=1;AF=0.5;AN=2;DP=37;FS=0;FractionInformativeReads=1;MQ=60;set=variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,9:24:99:205,0,434:5,10,3,6
chr2	139312237	.	T	C	413.82	PASS	AC=1;AF=0.5;AN=2;DP=67;FractionInformativeReads=1;MQ=60;set=variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,19:33:99:529,0,352:5,9,4,15
chr2	139316780	.	G	C	1020.08	PASS	AC=1;AF=0.5;AN=2;DP=146;FractionInformativeReads=1;MQ=60;set=variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,24:58:99:602,0,884:16,18,11,13
chr2	139316934	.	G	T	802.22	PASS	AC=2;AF=0.538;AN=2;DP=622;MQ=60;set=variant4-variant5-variant8-variant14-variant15-variant17-variant34-variant35-variant36-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1608,164,0:0,0,24,31
chr2	139318551	.	AG	A	197.03	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.186;QD=7.3;ReadPosRankSum=-0.239;SOR=0.602;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,8:27:99:234,0,684:10,9,4,4
chr2	139322129	.	G	A	183.91	PASS	AC=1;AF=0.5;AN=2;DP=164;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant8-variant14-variant15-variant17-variant34-variant35-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:11,12:23:99:309,0,266:7,4,8,4
chr2	139322237	.	T	C	1675.76	PASS	AC=1;AF=0.5;AN=2;DP=118;FS=0.715;FractionInformativeReads=1;MQ=60;MQRankSum=-0.971;QD=14.2;ReadPosRankSum=0.426;SOR=0.84;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,63:118:99:1704,0,1360:34,21,41,22
chr2	139326879	.	G	C	4487.42	PASS	AC=2;AF=1;AN=2;DP=5873;FS=0;MQ=60;MQRankSum=1.347;ReadPosRankSum=0.93;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,116:116:99:3432,348,0:0,0,63,53
chr2	139327055	.	A	G	2369.13	PASS	AC=1;AF=0.5;AN=2;DP=1023;set=variant3-variant9-variant14-variant18-variant19-variant22-variant23-variant30-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,56:100:99:1564,0,1288:27,17,28,28
chr2	139329256	.	C	T	7590.6	PASS	AC=2;AF=0.989;AN=2;DP=9907;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,201:201:99:6338,603,0:0,0,115,86
chr2	139330057	.	G	A	2155.75	PASS	AC=1;AF=0.5;AN=2;DP=1830;MQ=60;set=variant4-variant5-variant8-variant14-variant15-variant17-variant34-variant35-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:84,57:141:99:1450,0,2190:52,32,35,22
chr2	139330238	.	TTATAAAGACAGC	T	4117.89	PASS	AC=1;AF=0.5;AN=2;DP=543;MQ=60;set=variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:149,111:260:99:4117,0,10408:84,65,47,64
chr2	139330940	.	G	A	3065.05	PASS	AC=1;AF=0.5;AN=2;DP=485;MQ=60;set=variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:134,99:233:99:2332,0,3589:57,77,38,61
chr2	139429068	.	G	A	4008.67	PASS	AC=2;AF=0.813;AN=2;DP=6763;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,156:156:99:4914,466,0:0,0,85,71
chr2	140989586	.	C	T	992.29	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=1.065;FractionInformativeReads=1;MQ=60;MQRankSum=1.565;QD=15.75;ReadPosRankSum=-2.82;SOR=0.929;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,34:63:99:1021,0,851:20,9,25,9
chr2	140989774	.	GT	G	12689.9	PASS	AC=1;AF=0.737;AN=2;DP=14835;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:189,185:374:99:4763,0,4863:99,90,97,88
chr2	140989843	.	A	G	11431	PASS	AC=1;AF=0.711;AN=2;DP=12883;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:160,167:327:99:4271,0,3733:74,86,79,88
chr2	140990351	.	T	A	8350.61	PASS	AC=2;AF=1;AN=2;DP=10038;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,221:221:99:6652,662,0:0,0,111,110
chr2	140990647	.	TAAAG	T	2139.71	PASS	AC=1;AF=0.5;AN=2;DP=132;FS=0.661;FractionInformativeReads=0.977;MQ=60;MQRankSum=-1.672;QD=16.21;ReadPosRankSum=2.549;SOR=0.788;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,57:129:99:2177,0,3707:32,40,24,33
chr2	140992337	.	C	A	4029.18	PASS	AC=1;AF=0.684;AN=2;DP=5146;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,44:103:99:942,0,2411:31,28,24,20
chr2	140992340	.	A	T	1289.49	PASS	AC=1;AF=0.5;AN=2;DP=906;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant19-variant29-variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,61:104:99:1470,0,1597:23,20,33,28
chr2	140996866	.	G	A	125.43	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.387;QD=11.4;ReadPosRankSum=-0.143;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:154,0,196:5,1,5,0
chr2	141004513	.	C	T	740.04	PASS	AC=1;AF=0.75;AN=2;DP=699;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:94:408,0,94:3,0,9,1
chr2	141004529	.	A	G	989.69	PASS	AC=1;AF=0.966;AN=2;DP=1258;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:6,14:20:99:486,0,204:6,0,12,2
chr2	141032088	.	C	T	4661.96	PASS	AC=1;AF=0.75;AN=2;DP=6034;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:72,60:132:99:1264,0,1627:34,38,29,31
chr2	141072384	.	T	C	233.41	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.637;QD=15.56;ReadPosRankSum=-0.868;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:262,0,279:7,1,7,0
chr2	141199904	.	C	T	213.17	PASS	AC=1;AF=0.583;AN=2;DP=344;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant8-variant9-variant14-variant16-variant17-variant19-variant20-variant27-variant31-variant33-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:265,0,291:6,5,7,3
chr2	141202369	.	G	C	280.16	PASS	AC=1;AF=0.588;AN=2;DP=271;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant8-variant9-variant14-variant16-variant17-variant19-variant20-variant27-variant31-variant33-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,10:23:99:324,0,428:2,11,1,9
chr2	141242882	.	A	T	602.95	PASS	AC=1;AF=0.5;AN=2;DP=237;FractionInformativeReads=1;MQ=60;set=variant6-variant19-variant20-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:570,0,373:10,8,15,5
chr2	141242918	.	T	C	999.66	PASS	AC=1;AF=0.5;AN=2;DP=396;FractionInformativeReads=1;MQ=60;set=variant6-variant19-variant20-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,34:68:99:863,0,774:19,15,22,12
chr2	141260458	.	T	C	193.66	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.485;QD=13.83;ReadPosRankSum=0.71;SOR=1.402;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:222,0,233:7,1,6,0
chr2	141260507	.	T	C	478.47	PASS	AC=1;AF=0.588;AN=2;DP=840;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant8-variant9-variant14-variant16-variant19-variant20-variant27-variant33-variant34-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,18:38:99:438,0,560:16,4,12,6
chr2	141260668	.	A	G	1094.68	PASS	AC=1;AF=0.688;AN=2;DP=2896;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,32:80:99:770,0,1265:18,30,11,21
chr2	141267744	.	T	C	278.95	PASS	AC=2;AF=1;AN=2;DP=864;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:692,57,0:0,0,3,16
chr2	141272253	.	C	T	1631.29	PASS	AC=1;AF=0.5;AN=2;DP=175;FS=0;FractionInformativeReads=0.994;MQ=60;MQRankSum=0.91;QD=9.32;ReadPosRankSum=-1.333;SOR=0.715;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:94,80:174:99:1660,0,2249:50,44,43,37
chr2	141272360	.	GAA	GAAA,GA,G	801.03	PASS	AC=0,0,1;AF=0.167,0.167,0.167;AN=2;DP=255;MQ=60;set=variant29-variant31-variant41	GT:DP:GQ:SB	0/3:59:99:10,25,7,17
chr2	141272413	.	T	C	252.53	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=2.793;FractionInformativeReads=1;MQ=60;MQRankSum=0.29;QD=10.98;ReadPosRankSum=1.581;SOR=1.552;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:281,0,508:2,13,0,8
chr2	141274576	.	T	C	4185.36	PASS	AC=1;AF=0.802;AN=2;DP=4831;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,29:53:99:875,0,700:5,19,5,24
chr2	141283603	.	T	G	1640.88	PASS	AC=2;AF=1;AN=2;DP=2244;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1905,152,0:0,0,7,44
chr2	141284041	.	A	G	108.94	PASS	AC=1;AF=0.989;AN=2;DP=445;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.937;ReadPosRankSum=1.754;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:159,0,116:0,3,0,4
chr2	141359287	.	C	T	88.49	PASS	AC=1;AF=0.667;AN=2;DP=88;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant9-variant13-variant14-variant23-variant25-variant27-variant28-variant31-variant32-variant37-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:66:66,0,208:0,5,0,2
chr2	141457985	.	T	A	729.95	PASS	AC=1;AF=0.533;AN=2;DP=1339;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant20-variant24-variant31-variant32-variant33-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:49,34:83:99:969,0,1476:22,27,16,18
chr2	141458326	.	T	TA	60.01	PASS	AC=1;AF=0.545;AN=2;DP=98;FS=0;MQ=60;set=variant2-variant3-variant4-variant8-variant20-variant24-variant31-variant32-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:44:105,0,44:0,2,0,4
chr2	141459964	.	C	T	1332.03	PASS	AC=1;AF=0.533;AN=2;DP=1700;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant20-variant24-variant31-variant32-variant33-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:48,37:85:99:895,0,1364:28,20,22,15
chr2	141460213	.	G	A	166.67	PASS	AC=1;AF=0.536;AN=2;DP=269;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant20-variant24-variant31-variant32-variant33-variant36-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,6:17:99:181,0,393:1,10,0,6
chr2	141473409	.	CA	C	51.11	PASS	AC=1;AF=0.673;AN=2;DP=265;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant21-variant22-variant24-variant25-variant26-variant29-variant30-variant31-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:64:103,0,64:2,0,3,0
chr2	141473505	.	A	T	403.42	PASS	AC=2;AF=0.662;AN=2;DP=1410;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,22:23:58:667,58,0:1,0,15,7
chr2	141474402	.	G	GA	137.87	PASS	AC=2;AF=0.684;AN=2;DP=1481;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-filterInvariant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:868,90,0:0,0,5,25
chr2	141474456	.	C	T	108.19	PASS	AC=1;AF=0.652;AN=2;DP=448;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:182,0,269:1,7,0,5
chr2	141527013	.	A	G	651.34	PASS	AC=2;AF=0.78;AN=2;DP=805;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:62:635,62,0:0,0,6,15
chr2	141528592	.	T	C	2142.35	PASS	AC=2;AF=0.841;AN=2;DP=3073;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,70:70:99:2408,210,0:0,0,18,52
chr2	141533662	.	T	C	538.5	PASS	AC=2;AF=0.85;AN=2;DP=918;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:527,45,0:0,0,10,5
chr2	141571329	.	T	C	5297.15	PASS	AC=2;AF=0.852;AN=2;DP=6168;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3438,362,0:0,0,53,68
chr2	141571440	.	C	G	499.72	PASS	AC=1;AF=0.632;AN=2;DP=1118;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,16:23:99:556,0,203:0,7,1,15
chr2	141571456	.	GA	GAA,G	195.35	PASS	AC=2,0;AF=0.632,0.044;AN=2;DP=790;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-filterInvariant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:13:39:0,0,0,13
chr2	141571480	.	A	G	332.92	PASS	AC=1;AF=0.636;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant29-variant30-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:186,0,192:0,5,0,5
chr2	141598473	.	A	T,AT	2685.77	PASS	AC=0,2;AF=0.012,0.988;AN=2;DP=2345;FS=0;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:55:99:0,0,33,22
chr2	141625834	.	TAAA	TA,TAA,T,TAAAA	131.14	PASS	AC=0,1,0,0;AF=0.16,0.34,0.02,0.02;AN=2;DP=731;set=variant-variant2-variant3-variant4-variant7-variant8-variant10-filterInvariant13-variant15-variant17-variant19-variant20-variant21-variant24-variant25-variant26-filterInvariant27-variant28-variant29-variant31-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:10:33:1,2,2,5
chr2	141707694	.	C	T	202.44	PASS	AC=2;AF=0.897;AN=2;DP=252;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:226,18,0:0,0,3,3
chr2	141707774	.	G	T	284.27	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.041;QD=14.96;ReadPosRankSum=-0.454;SOR=0.76;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,11:19:99:312,0,173:5,3,7,4
chr2	141709419	.	T	G	3521.67	PASS	AC=1;AF=0.8;AN=2;DP=5013;MQ=60;set=variant-variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,75:133:99:1879,0,1280:25,33,34,41
chr2	141747249	.	A	T	1355.58	PASS	AC=1;AF=0.659;AN=2;DP=1972;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant19-variant22-variant24-variant26-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:28,40:68:99:1119,0,757:7,21,10,30
chr2	141747293	.	T	C	800.96	PASS	AC=1;AF=0.667;AN=2;DP=844;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant11-variant12-variant19-variant22-variant24-variant26-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:674,0,452:1,12,2,17
chr2	141751461	.	C	T	143.55	PASS	AC=1;AF=0.595;AN=2;DP=451;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant19-variant22-variant24-variant26-variant28-variant30-variant33-variant34-variant35-variant36-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:350,0,322:9,1,9,3
chr2	141751592	.	G	A	962.36	PASS	AC=1;AF=0.636;AN=2;DP=2015;MQ=60;set=variant2-variant3-variant6-variant8-variant9-variant10-variant11-variant12-variant19-variant22-variant24-variant26-variant28-variant30-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:33,40:73:99:926,0,777:17,16,20,20
chr2	141762830	.	C	T	727.39	PASS	AC=1;AF=0.794;AN=2;DP=909;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:320,0,425:10,5,9,3
chr2	141771058	.	T	A	722.16	PASS	AC=1;AF=0.757;AN=2;DP=766;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:154,0,143:4,0,4,1
chr2	141816621	.	A	G	1321.73	PASS	AC=2;AF=0.989;AN=2;DP=1102;MQ=60;MQRankSum=0.134;ReadPosRankSum=2.005;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:838,75,0:0,0,7,18
chr2	141945949	.	C	T	1172.19	PASS	AC=2;AF=1;AN=2;DP=1579;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1294,105,0:0,0,26,9
chr2	142237868	.	G	A	222.97	PASS	AC=1;AF=0.574;AN=2;DP=903;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:396,0,247:7,1,10,2
chr2	142301902	.	TC	T	245.64	PASS	AC=1;AF=0.5;AN=2;DP=78;set=variant3-variant4-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:12,6:18:99:165,0,139:4,8,3,3
chr2	142567709	.	AGAAAGAAAGAAAGAAAGAAAGAAAGAAG	A	275.02	PASS	AC=1;AF=0.75;AN=2;DP=122;MQ=60;set=variant5-variant11-filterInvariant21-variant41	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:72:191,0,72:2,1,5,0
chr2	142567910	.	T	C	1173.64	PASS	AC=1;AF=0.643;AN=2;DP=2955;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant13-variant14-variant17-variant18-variant19-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant37-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,30:67:99:840,0,964:15,22,11,19
chr2	143713700	.	T	A	268.55	PASS	AC=1;AF=0.583;AN=2;DP=674;FractionInformativeReads=1;MQ=60;set=variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant40-variant41-filterInvariant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:256,0,382:9,3,7,1
chr2	143718459	.	T	TAAA,TAAAA,TAAAAA	485.54	PASS	AC=0,1,0;AF=0.089,0.446,0.054;AN=2;DP=642;MQ=60;set=variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant19-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:19:99:2,9,2,6
chr2	143746494	.	C	G	3705.3	PASS	AC=1;AF=0.563;AN=2;DP=1716;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant15-variant16-variant17-variant19-variant20-variant24-variant29-variant34-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,43:93:99:1074,0,1255:24,26,18,25
chr2	143746849	.	C	A	3237.63	PASS	AC=1;AF=0.556;AN=2;DP=1519;MQ=60;set=variant-variant5-variant6-variant8-variant10-variant15-variant16-variant17-variant19-variant20-variant24-variant29-variant34-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,42:75:99:1186,0,855:21,12,32,10
chr2	143787161	.	C	A	1815.55	PASS	AC=1;AF=0.788;AN=2;DP=2737;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,22:64:99:339,0,1134:23,19,10,12
chr2	143787274	.	C	T	1621.12	PASS	AC=2;AF=0.989;AN=2;DP=3116;FS=0;FractionInformativeReads=1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1753,185,0:0,0,26,36
chr2	143886953	.	T	C	847.04	PASS	AC=1;AF=0.781;AN=2;DP=711;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant17-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:298,0,200:3,6,2,7
chr2	143913004	.	T	G	642.75	PASS	AC=2;AF=0.989;AN=2;DP=1066;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:660,57,0:0,0,16,3
chr2	143959863	.	C	T	1059.97	PASS	AC=1;AF=0.5;AN=2;DP=767;MQ=60;set=variant-variant2-variant3-variant7-variant13-variant15-variant21-variant26-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,24:59:99:585,0,960:16,19,10,14
chr2	143959892	.	C	T	466.3	PASS	AC=1;AF=0.5;AN=2;DP=627;MQ=60;set=variant-variant2-variant3-variant7-variant13-variant15-variant21-variant26-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:551,0,690:12,13,8,14
chr2	143959961	.	A	G	302.88	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=3.96;FractionInformativeReads=1;MQ=60;MQRankSum=0.471;QD=12.12;ReadPosRankSum=2.247;SOR=1.688;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,10:25:99:331,0,435:6,9,2,8
chr2	143973860	.	G	A	701.4	PASS	AC=2;AF=0.833;AN=2;DP=3298;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2498,248,0:0,0,52,31
chr2	143973978	.	A	G	1323.15	PASS	AC=1;AF=0.5;AN=2;DP=111;FS=3.524;FractionInformativeReads=1;MQ=60;MQRankSum=-0.634;QD=11.92;ReadPosRankSum=-1.271;SOR=0.414;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:54,57:111:99:1351,0,1448:21,33,27,30
chr2	143986002	.	T	C	329.04	PASS	AC=1;AF=0.652;AN=2;DP=398;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant13-variant15-variant18-variant19-variant21-variant26-variant29-variant32-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:148,0,432:11,4,5,1
chr2	144193151	.	CT	CTTT,CTT,C	399.08	PASS	AC=0,1,0;AF=0.262,0.429,0.024;AN=2;DP=1859;set=variant-variant2-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-filterInvariant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:31:99:11,10,6,4
chr2	144193452	.	G	A	411.16	PASS	AC=1;AF=0.5;AN=2;DP=100;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant13-variant15-variant26-variant32-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:286,0,219:0,6,2,8
chr2	144194447	.	T	C	427.26	PASS	AC=1;AF=0.5;AN=2;DP=236;FractionInformativeReads=1;MQ=60;set=variant-variant7-variant13-variant15-variant22-variant26-variant32-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,20:29:99:589,0,221:8,1,14,6
chr2	144276715	.	C	CA	161.43	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.01;QD=9.5;ReadPosRankSum=1.876;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:199,0,200:8,1,8,0
chr2	144703500	.	T	C	14588.3	PASS	AC=2;AF=1;AN=2;DP=17091;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,376:377:99:12137,1120,0:1,0,172,204
chr2	144899559	.	C	A	1907.99	PASS	AC=1;AF=0.706;AN=2;DP=4613;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:52,51:103:99:1215,0,1257:25,27,23,28
chr2	144934655	.	A	AG	940.19	PASS	AC=2;AF=1;AN=2;DP=1409;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:977,90,0:0,0,23,7
chr2	144934819	.	T	TAA,TA	465.84	PASS	AC=1,0;AF=0.091,0.53;AN=2;DP=2000;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:64:99:13,27,11,13
chr2	144993201	.	C	T	206.33	PASS	AC=1;AF=0.5;AN=2;DP=95;MQ=60;set=variant-variant2-variant29-variant31-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:70:70,0,116:2,2,1,2
chr2	145052168	.	ATT	A	289.01	PASS	AC=1;AF=0.5;AN=2;DP=11;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.354;QD=26.27;ReadPosRankSum=-1.532;SOR=0.293;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,9:11:55:326,0,55:0,2,3,6
chr2	145052183	.	A	G	193.54	PASS	AC=2;AF=1;AN=2;DP=300;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:30:447,30,0:0,0,2,7
chr2	145188029	.	G	GT	1334.3	PASS	AC=1;AF=0.5;AN=2;DP=103;FS=3.936;FractionInformativeReads=0.981;MQ=60;MQRankSum=-0.691;QD=12.95;ReadPosRankSum=-1.549;SOR=0.382;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,54:101:99:1372,0,1152:33,14,33,21
chr2	145255210	.	T	C	1044.88	PASS	AC=1;AF=0.688;AN=2;DP=4852;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,65:101:99:1685,0,893:23,13,43,22
chr2	145255399	.	TATATATATATATGTCATTCTCAACATATATATATATATGTCATTCTCAAC	T	356.1	PASS	AC=2;AF=0.9;AN=2;DP=967;set=variant10-variant13-variant16-variant17-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:73:604,73,0:0,0,2,12
chr2	145780723	.	CTT	C	1812.46	PASS	AC=1;AF=0.5;AN=2;DP=241;MQ=60;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,49:91:99:1931,0,1698:28,14,27,22
chr2	147346154	.	A	C	2529.73	PASS	AC=1;AF=0.625;AN=2;DP=887;FractionInformativeReads=1;MQ=60;set=variant10-variant21-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:82,107:189:99:2770,0,2062:49,33,50,57
chr2	147596973	.	A	G	541.36	PASS	AC=1;AF=0.633;AN=2;DP=1235;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant26-variant30-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,19:32:99:500,0,369:10,3,9,10
chr2	147597203	.	G	A	166.2	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.059;QD=10.39;ReadPosRankSum=0.106;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:194,0,252:2,7,2,5
chr2	148602544	.	C	CT,CTT	217.08	PASS	AC=2,0;AF=0.667,0.214;AN=2;DP=909;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:17:6:1,1,10,5
chr2	148687924	.	GTT	GT,GTTT,G	261.73	PASS	AC=1,0,0;AF=0.539,0.013,0.026;AN=2;DP=2490;set=variant-variant2-variant3-variant4-variant5-filterInvariant6-filterInvariant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-filterInvariant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:56:99:13,13,19,11
chr2	148688425	.	GT	G,GTT	876.64	PASS	AC=0,1;AF=0.31,0.19;AN=2;DP=6263;set=variant-variant2-variant3-filterInvariant4-variant5-variant6-filterInvariant7-variant8-variant9-filterInvariant10-filterInvariant11-variant12-variant14-filterInvariant15-variant16-variant17-variant18-variant19-variant20-filterInvariant21-variant22-variant23-variant24-variant25-variant26-variant27-filterInvariant28-filterInvariant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-filterInvariant38-filterInvariant40-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:108:85:19,71,5,13
chr2	148701099	.	GAA	GA,G	256.37	PASS	AC=1,0;AF=0.569,0.028;AN=2;DP=1351;set=variant-variant2-variant3-variant5-variant9-variant10-variant11-variant12-variant14-filterInvariant15-variant16-variant17-filterInvariant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-filterInvariant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-filterInvariant44	GT:DP:GQ:SB	0/1:25:99:4,12,4,5
chr2	148730367	.	G	C	782.42	PASS	AC=1;AF=0.5;AN=2;DP=494;MQ=60;set=variant10-variant11-variant16-variant29-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:644,0,704:18,14,15,13
chr2	148733548	.	T	TA	1868.72	PASS	AC=1;AF=0.722;AN=2;DP=1896;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,31:50:99:800,0,427:8,11,10,21
chr2	149227542	.	G	A	1400.25	PASS	AC=1;AF=0.5;AN=2;DP=109;FS=3.58;FractionInformativeReads=1;MQ=60;MQRankSum=-0.294;QD=12.85;ReadPosRankSum=-2.258;SOR=1.095;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:56,53:109:99:1428,0,1653:30,26,33,20
chr2	149240657	.	GT	G	657.21	PASS	AC=1;AF=0.818;AN=2;DP=4612;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,51:94:99:972,0,756:24,19,35,16
chr2	149243260	.	G	A	291.86	PASS	AC=1;AF=0.729;AN=2;DP=538;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:212,0,388:10,0,5,1
chr2	149271566	.	T	A	11113.5	PASS	AC=1;AF=0.842;AN=2;DP=13085;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:152,128:280:99:2930,0,3630:68,84,52,76
chr2	149402404	.	C	CG	111.94	PASS	AC=2;AF=1;AN=2;DP=219;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant21-variant23-variant24-variant26-variant28-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:374,30,0:0,0,6,4
chr2	149544648	.	G	GA	2490.44	PASS	AC=1;AF=0.5;AN=2;DP=1218;set=variant-variant12-variant14-variant19-variant30-variant32-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:74,58:132:99:1444,0,1870:37,37,27,31
chr2	149804599	.	C	T	806.61	PASS	AC=1;AF=0.55;AN=2;DP=536;FractionInformativeReads=1;set=variant-variant3-variant13-variant14-variant19-variant22-variant28-variant29-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,28:42:99:920,0,364:3,11,5,23
chr2	149830134	.	G	A	111.87	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.529;QD=9.32;ReadPosRankSum=-2.141;SOR=0.412;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:140,0,242:1,6,1,4
chr2	149838132	.	T	G	54.58	PASS	AC=1;AF=0.556;AN=2;DP=108;FractionInformativeReads=1;MQ=60;set=variant11-variant18-variant20-variant27-variant30-variant34-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:169,0,278:4,7,2,6
chr2	149853960	.	A	G	1727.44	PASS	AC=2;AF=0.703;AN=2;DP=2385;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2390,231,0:0,0,30,47
chr2	149881029	.	AGTGTGTGTGTGT	AGTGTGTGT,AGTGTGTGTGT,AGT,A,AGTGT,AGTGTGT,AGTGTGTGTGTGTGTGT	113.56	PASS	AC=1,0,0,0,1,0,0;AF=0.523,0.174,0.023,0.023,0.035,0.07,0.012;AN=2;DP=1616;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	5/1:24:99:2,0,13,9
chr2	149883080	.	G	A	1383.37	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=0.819;FractionInformativeReads=1;MQ=60;MQRankSum=1.165;QD=15.9;ReadPosRankSum=-1.131;SOR=0.885;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,48:87:99:1412,0,1026:21,18,28,20
chr2	149894905	.	ATTGGTT	A	773.08	PASS	AC=1;AF=0.989;AN=2;DP=1023;FS=0;MQ=60;MQRankSum=0.489;ReadPosRankSum=1.209;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:12,14:26:99:552,0,872:7,5,9,5
chr2	149895132	.	T	C	1026.69	PASS	AC=1;AF=0.686;AN=2;DP=1080;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:17,12:29:99:300,0,486:5,12,3,9
chr2	149895193	.	A	G	373.36	PASS	AC=2;AF=1;AN=2;DP=669;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:366,36,0:0,0,4,8
chr2	149933985	.	T	TAAG	5926.93	PASS	AC=1;AF=0.625;AN=2;DP=3148;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant21-variant22-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,33:96:99:1196,0,3080:33,30,21,12
chr2	149934100	.	T	C	3935.87	PASS	AC=1;AF=0.593;AN=2;DP=2454;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant21-variant22-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,29:58:99:669,0,810:6,23,11,18
chr2	149934159	.	G	C	2044.24	PASS	AC=1;AF=0.593;AN=2;DP=931;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant15-variant21-variant22-variant24-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:403,0,492:1,8,2,9
chr2	149934167	.	G	A	1871.24	PASS	AC=1;AF=0.932;AN=2;DP=1269;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:309,0,501:0,8,1,7
chr2	150071861	.	A	C	565.59	PASS	AC=1;AF=0.594;AN=2;DP=577;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant14-variant16-variant17-variant19-variant21-variant22-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:415,0,489:1,13,2,10
chr2	150187025	.	C	A	37.29	PASS	AC=1;AF=0.672;AN=2;DP=248;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant13-variant17-variant18-variant20-variant21-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:63:82,0,63:2,1,3,0
chr2	150187137	.	G	C	1038.76	PASS	AC=2;AF=1;AN=2;DP=1577;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:83:765,83,0:0,0,14,14
chr2	150305703	.	G	A	1820.11	PASS	AC=1;AF=0.542;AN=2;DP=2052;FractionInformativeReads=1;MQ=60;set=variant12-variant13-variant14-variant17-variant18-variant25-variant26-variant27-variant28-variant30-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:107,82:189:99:2157,0,2840:50,57,31,51
chr2	150320627	.	TAA	TA,TAAA,T	234.13	PASS	AC=1,0,0;AF=0.651,0.07,0.023;AN=2;DP=754;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:16:5:3,2,9,2
chr2	150328912	.	T	C	2671.88	PASS	AC=1;AF=0.829;AN=2;DP=4006;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,50:93:99:1368,0,1163:18,25,24,26
chr2	150329726	.	G	C	5374	PASS	AC=2;AF=0.898;AN=2;DP=6277;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4650,401,0:0,0,53,81
chr2	150329806	.	T	C	2830.57	PASS	AC=2;AF=0.898;AN=2;DP=3031;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,75:75:99:2777,225,0:0,0,27,48
chr2	150329973	.	A	C	7866.52	PASS	AC=2;AF=0.898;AN=2;DP=9668;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,216:216:99:6613,647,0:0,0,126,90
chr2	150330248	.	T	C	7696.8	PASS	AC=2;AF=0.898;AN=2;DP=10119;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,196:196:99:6631,588,0:0,0,88,108
chr2	150330618	.	A	G	5370.89	PASS	AC=1;AF=0.829;AN=2;DP=6165;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,71:110:99:1977,0,950:16,23,23,48
chr2	150426362	.	T	C	762.44	PASS	AC=1;AF=0.714;AN=2;DP=1852;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,22:46:99:565,0,664:8,16,8,14
chr2	150426399	.	A	G	1216.86	PASS	AC=2;AF=1;AN=2;DP=1386;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:944,75,0:0,0,9,16
chr2	150427516	.	C	T	396.4	PASS	AC=1;AF=0.825;AN=2;DP=857;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,10:22:99:262,0,315:8,4,7,3
chr2	150428849	.	C	CAAAAAAAAAA,CAAAAAAAAAAA,CAAAAAAAAAAAA,CAAAAAAAAA,CAAAAAAAA	547.62	PASS	AC=0,0,0,1,0;AF=0.532,0.129,0.097,0.129,0.048;AN=2;DP=383;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant19-variant20-variant23-variant24-variant27-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/4:16:99:9,4,3,0
chr2	150432377	.	C	G	939.79	PASS	AC=1;AF=0.825;AN=2;DP=1826;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:401,0,312:8,8,8,10
chr2	150432469	.	G	T	340.68	PASS	AC=1;AF=0.872;AN=2;DP=470;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,2:5:67:67,0,107:0,3,0,2
chr2	150432976	.	C	T	2267.16	PASS	AC=1;AF=0.93;AN=2;DP=3466;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,37:79:99:829,0,1015:24,18,19,18
chr2	150433128	.	C	G	1192.44	PASS	AC=1;AF=0.866;AN=2;DP=1501;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,19:35:99:458,0,448:3,13,8,11
chr2	150435889	.	C	CAA	2490.78	PASS	AC=1;AF=0.866;AN=2;DP=2685;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,25:64:99:921,0,1580:26,13,15,10
chr2	150443689	.	C	G	3532.2	PASS	AC=1;AF=0.93;AN=2;DP=5340;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,49:100:99:1095,0,1310:24,27,25,24
chr2	150443813	.	C	T	1381.61	PASS	AC=1;AF=0.872;AN=2;DP=2544;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,14:43:99:326,0,789:12,17,5,9
chr2	150443922	.	G	C	166.58	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=3.862;FractionInformativeReads=1;MQ=60;MQRankSum=-0.903;QD=6.66;ReadPosRankSum=1.078;SOR=1.022;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,8:25:99:195,0,494:10,7,3,5
chr2	151324743	.	G	GA	1161.64	PASS	AC=2;AF=0.977;AN=2;DP=1861;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:99:913,99,0:0,0,21,11
chr2	151325295	.	A	G	4681.49	PASS	AC=2;AF=0.8;AN=2;DP=4635;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,108:108:99:4015,324,0:0,0,60,48
chr2	151326084	.	C	T	1236.29	PASS	AC=1;AF=0.5;AN=2;DP=329;FractionInformativeReads=1;MQ=60;set=variant8-variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:50,34:84:99:828,0,1291:19,31,14,20
chr2	151326157	.	C	CAAA,CAA,CA,CAAAA	1176.67	PASS	AC=2,0,0,0;AF=0.523,0.148,0.273,0.034;AN=2;DP=1874;set=Intersection	GT:DP:GQ:SB	1/1:25:76:0,0,10,15
chr2	151328284	.	GAA	GA,G	1080.68	PASS	AC=2,0;AF=0.989,0.011;AN=2;DP=1960;FS=0;set=Intersection	GT:DP:GQ:SB	1/1:24:72:0,0,9,15
chr2	151343978	.	GAAA	G,GAA,GAAAAAAAA,GA	246.46	PASS	AC=1,0,0,0;AF=0.308,0.231,0.038,0.115;AN=2;DP=235;FS=0;MQ=60;set=variant3-variant8-variant13-variant15-filterInvariant19-variant21-variant25-variant27-variant32-filterInvariant35-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:4:18:0,1,1,2
chr2	151900223	.	T	C	4973.73	PASS	AC=2;AF=1;AN=2;DP=6010;FS=0;MQ=60;MQRankSum=1.687;ReadPosRankSum=0.691;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4082,402,0:0,0,74,60
chr2	151900390	.	TAAAAACAAAAAC	TAAAAAC,T	781.42	PASS	AC=0,2;AF=0.333,0.643;AN=2;DP=1897;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	2/2:14:46:0,0,0,14
chr2	151905383	.	T	C	309.03	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.366;QD=11.45;ReadPosRankSum=3.586;SOR=0.675;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,12:27:99:337,0,464:5,10,4,8
chr2	151905413	.	A	T	670.08	PASS	AC=2;AF=1;AN=2;DP=852;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,21:21:63:735,63,0:0,0,6,15
chr2	152105759	.	A	G	1010.35	PASS	AC=2;AF=0.538;AN=2;DP=869;MQ=60;set=variant4-variant5-variant9-variant10-variant11-variant14-variant17-variant20-variant25-variant28-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2026,206,0:0,0,29,40
chr2	152106653	.	G	A	4003.47	PASS	AC=2;AF=0.538;AN=2;DP=3608;MQ=60;set=variant4-variant5-variant9-variant10-variant11-variant14-variant17-variant20-variant25-variant28-variant29-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,212:212:99:6543,635,0:0,0,91,121
chr2	152107112	.	C	CA,CAA,CAAA	258.77	PASS	AC=1,0,0;AF=0.412,0.162,0.059;AN=2;DP=631;set=variant-variant2-variant3-variant4-variant5-variant7-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:15:22:4,0,9,2
chr2	152107214	.	T	C	4488.74	PASS	AC=2;AF=0.989;AN=2;DP=5121;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:2940,297,0:0,0,58,42
chr2	152109159	.	C	T	999.65	PASS	AC=2;AF=0.989;AN=2;DP=1173;MQ=60;MQRankSum=-0.106;ReadPosRankSum=0.176;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1207,105,0:0,0,26,9
chr2	152118338	.	G	GT	2942.3	PASS	AC=2;AF=0.731;AN=2;DP=5206;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,119:119:99:3688,358,0:0,0,61,58
chr2	152132130	.	A	G	1572.84	PASS	AC=2;AF=0.542;AN=2;DP=1702;MQ=60;set=variant4-variant5-variant9-variant10-variant11-variant14-variant17-variant20-variant25-variant28-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:4039,360,0:0,0,55,65
chr2	152135514	.	A	G	1001.75	PASS	AC=2;AF=0.542;AN=2;DP=777;MQ=60;set=variant4-variant5-variant9-variant10-variant11-variant14-variant17-variant20-variant25-variant28-variant37-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1665,149,0:0,0,14,36
chr2	152138522	.	T	C	1550.42	PASS	AC=2;AF=0.713;AN=2;DP=1537;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1126,120,0:0,0,19,21
chr2	152139022	.	T	C	143.53	PASS	AC=2;AF=0.8;AN=2;DP=178;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant9-variant10-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:170,21,0:0,0,4,3
chr2	152139271	.	C	T	628.49	PASS	AC=2;AF=0.713;AN=2;DP=1345;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:86:845,86,0:0,0,15,14
chr2	152139493	.	A	G	256.33	PASS	AC=2;AF=0.764;AN=2;DP=534;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:330,39,0:0,0,5,8
chr2	152146672	.	G	T	1636.77	PASS	AC=2;AF=0.725;AN=2;DP=1640;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1518,108,0:0,0,1,35
chr2	152236045	.	TA	T,TAA	449.15	PASS	AC=1,0;AF=0.636,0.015;AN=2;DP=1083;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant23-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:34:99:8,12,4,10
chr2	152266311	.	T	C	760.43	PASS	AC=1;AF=0.667;AN=2;DP=2889;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,29:65:99:610,0,984:22,14,16,13
chr2	152266473	.	T	C	1767.3	PASS	AC=1;AF=0.667;AN=2;DP=4839;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:82,61:143:99:1498,0,2097:43,39,37,24
chr2	152266731	.	T	A	1321.79	PASS	AC=1;AF=0.667;AN=2;DP=3372;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:60,39:99:99:958,0,1648:26,34,19,20
chr2	152267061	.	G	A	2110.43	PASS	AC=1;AF=0.5;AN=2;DP=852;MQ=60;set=variant5-variant10-variant29-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:86,77:163:99:1699,0,2221:38,48,35,42
chr2	152267072	.	T	G	1307.51	PASS	AC=1;AF=0.661;AN=2;DP=4599;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,69:145:99:1668,0,1779:31,45,28,41
chr2	152267672	.	G	A	692.87	PASS	AC=2;AF=1;AN=2;DP=556;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:514,45,0:0,0,12,3
chr2	152273503	.	G	A	509.95	PASS	AC=2;AF=0.743;AN=2;DP=1091;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:494,42,0:0,0,3,11
chr2	152295141	.	A	G	812.38	PASS	AC=1;AF=0.614;AN=2;DP=1052;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant30-variant33-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,22:47:99:522,0,625:17,8,14,8
chr2	152303171	.	G	A	851.59	PASS	AC=1;AF=0.817;AN=2;DP=1051;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:298,0,164:3,4,2,8
chr2	152311570	.	G	A	4457.44	PASS	AC=1;AF=0.775;AN=2;DP=5048;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,57:105:99:1499,0,1311:23,25,22,35
chr2	152314385	.	G	A	1490.45	PASS	AC=1;AF=0.63;AN=2;DP=3191;MQ=60;set=variant-variant3-variant7-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:62,50:112:99:1250,0,1504:30,32,25,25
chr2	152314547	.	C	CA	432.91	PASS	AC=1;AF=0.817;AN=2;DP=682;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:257,0,162:0,6,0,9
chr2	152315549	.	G	T	788.89	PASS	AC=1;AF=0.775;AN=2;DP=915;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:348,0,316:1,8,0,9
chr2	152317905	.	ATT	AT,A,ATTT	75.89	PASS	AC=2,0,0;AF=0.477,0.023,0.023;AN=2;DP=551;set=variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant17-variant19-filterInvariant20-variant23-filterInvariant24-filterInvariant25-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant44	GT:DP:GQ:SB	1/1:9:16:0,1,2,6
chr2	152318713	.	TATC	T	337.52	PASS	AC=1;AF=0.63;AN=2;DP=536;set=variant-variant3-variant7-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:291,0,744:10,5,6,2
chr2	152320118	.	G	A	3052.8	PASS	AC=1;AF=0.775;AN=2;DP=3428;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,44:89:99:1115,0,1334:25,20,26,18
chr2	152322095	.	A	T	2755.26	PASS	AC=1;AF=0.817;AN=2;DP=3895;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:914,0,1139:18,19,15,17
chr2	152331418	.	C	G	2196.28	PASS	AC=1;AF=0.817;AN=2;DP=2507;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,27:47:99:793,0,472:11,9,17,10
chr2	152331745	.	T	G	6497.21	PASS	AC=1;AF=0.614;AN=2;DP=8780;MQ=60;set=variant-variant3-variant7-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant30-variant33-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:184,167:351:99:4260,0,4586:96,88,98,69
chr2	152331999	.	G	T	11165.6	PASS	AC=1;AF=0.788;AN=2;DP=11513;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:140,163:303:99:4318,0,3881:73,67,82,81
chr2	152333118	.	C	G	4851.76	PASS	AC=1;AF=0.63;AN=2;DP=8083;MQ=60;set=variant-variant3-variant7-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:141,154:295:99:3992,0,3659:56,85,63,91
chr2	152333812	.	G	A	8583.64	PASS	AC=1;AF=0.775;AN=2;DP=10402;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:107,139:246:99:3775,0,2769:33,74,45,94
chr2	152342481	.	A	G	1113.68	PASS	AC=1;AF=0.63;AN=2;DP=1808;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,28:58:99:759,0,851:8,22,10,18
chr2	152349026	.	G	A	1563.72	PASS	AC=1;AF=0.775;AN=2;DP=1932;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,22:36:99:635,0,487:2,12,5,17
chr2	152350462	.	T	C	1034.85	PASS	AC=1;AF=0.775;AN=2;DP=1318;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:370,0,679:6,16,4,10
chr2	152352843	.	C	G	2951.91	PASS	AC=1;AF=0.775;AN=2;DP=3950;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,33:76:99:805,0,1143:23,20,19,14
chr2	152369117	.	T	C	1525.85	PASS	AC=2;AF=1;AN=2;DP=1278;FS=0;MQRankSum=-0.657;ReadPosRankSum=-0.299;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:928,72,0:0,0,20,4
chr2	152374800	.	G	A	3314.75	PASS	AC=1;AF=0.75;AN=2;DP=4704;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,44:83:99:1150,0,1019:24,15,26,18
chr2	152381168	.	CTTTT	CTT,CT,C,CTTTTT	131.76	PASS	AC=1,0,0,0;AF=0.289,0.158,0.026,0.026;AN=2;DP=1075;set=filterInvariant-variant2-filterInvariant3-variant4-filterInvariant5-variant7-variant9-variant16-variant17-variant21-filterInvariant26-variant28-variant31-variant32-filterInvariant33-variant34-variant35-filterInvariant41-filterInvariant42	GT:DP:GQ:SB	0/1:12:73:2,3,0,7
chr2	152382298	.	G	A	197.48	PASS	AC=1;AF=0.5;AN=2;DP=45;FractionInformativeReads=1;MQ=60;set=variant3-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,5:18:99:113,0,374:10,3,4,1
chr2	152382329	.	G	A	684.01	PASS	AC=1;AF=0.75;AN=2;DP=1175;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,10:35:99:240,0,737:18,7,7,3
chr2	152382454	.	C	G	3194.92	PASS	AC=1;AF=0.75;AN=2;DP=4514;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,54:108:99:1307,0,1376:33,21,34,20
chr2	152383913	.	T	C	1312.3	PASS	AC=1;AF=0.775;AN=2;DP=1659;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,23:41:99:622,0,417:9,9,16,7
chr2	152387553	.	T	C	3371.4	PASS	AC=1;AF=0.75;AN=2;DP=4481;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,41:88:99:1101,0,1117:19,28,16,25
chr2	152388228	.	G	C	2592.08	PASS	AC=1;AF=0.75;AN=2;DP=3388;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,30:73:99:888,0,1027:25,18,17,13
chr2	152388415	.	AT	A	2054.05	PASS	AC=1;AF=0.75;AN=2;DP=2039;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,29:54:99:924,0,772:8,17,9,20
chr2	152394534	.	T	G	2548.16	PASS	AC=1;AF=0.75;AN=2;DP=2394;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:671,0,1057:16,25,15,18
chr2	152396726	.	T	TA	723.03	PASS	AC=1;AF=0.782;AN=2;DP=1011;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:303,0,450:14,4,11,2
chr2	152402171	.	C	A	64.45	PASS	AC=1;AF=0.776;AN=2;DP=578;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,14:17:86:504,0,86:3,0,13,1
chr2	152402515	.	TA	TAA,TAAA,T,TAAAA	603.12	PASS	AC=2,0,0,0;AF=0.368,0.176,0.044,0.015;AN=2;DP=1414;set=variant2-variant3-variant4-variant6-variant7-filterInvariant8-filterInvariant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant38-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:24:25:1,1,6,16
chr2	152403014	.	C	T	929.67	PASS	AC=1;AF=0.763;AN=2;DP=3752;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,44:89:99:1046,0,1089:18,27,16,28
chr2	152404294	.	C	T	751.18	PASS	AC=1;AF=0.763;AN=2;DP=2111;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,27:58:99:703,0,871:7,24,6,21
chr2	152409416	.	C	T	893.62	PASS	AC=1;AF=0.756;AN=2;DP=2188;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,28:60:99:677,0,907:9,23,11,17
chr2	152409809	.	C	A	604.48	PASS	AC=1;AF=0.731;AN=2;DP=1290;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,13:43:99:322,0,891:21,9,9,4
chr2	152417064	.	G	A	1303.12	PASS	AC=1;AF=0.595;AN=2;DP=1941;MQ=60;set=variant-variant3-variant7-variant9-variant11-variant14-variant15-variant16-variant18-variant20-variant24-variant25-variant26-variant27-variant30-variant33-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,61:77:99:1623,0,368:13,3,33,28
chr2	152418488	.	T	C	141.05	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=2.066;FractionInformativeReads=1;MQ=60;MQRankSum=-0.226;QD=6.13;ReadPosRankSum=-1.13;SOR=0.193;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,8:23:99:169,0,511:12,3,5,3
chr2	152420361	.	C	T	2033.07	PASS	AC=1;AF=0.5;AN=2;DP=364;MQ=60;set=variant3-variant20-variant41	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:1010,0,1215:23,19,22,21
chr2	152422076	.	C	G	2579.86	PASS	AC=1;AF=0.763;AN=2;DP=6193;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:80,64:144:99:1684,0,2217:34,46,30,34
chr2	152422087	.	A	G	2527.26	PASS	AC=1;AF=0.593;AN=2;DP=4204;MQ=60;set=variant-variant2-variant3-variant7-variant9-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:79,65:144:99:1575,0,2051:34,45,31,34
chr2	152424933	.	T	TA	241.8	PASS	AC=1;AF=0.663;AN=2;DP=1299;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-filterInvariant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:299,0,279:7,7,7,7
chr2	152425692	.	T	C	680.62	PASS	AC=1;AF=0.589;AN=2;DP=1325;MQ=60;set=variant-variant2-variant3-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,20:53:99:469,0,928:22,11,14,6
chr2	152427249	.	A	G	553.26	PASS	AC=1;AF=0.744;AN=2;DP=1139;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,8:30:99:186,0,482:10,12,2,6
chr2	152431888	.	C	T	88.67	PASS	AC=1;AF=0.614;AN=2;DP=298;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant24-variant25-variant26-variant27-variant30-variant33-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:151,0,157:4,1,3,2
chr2	152432886	.	G	A	70.87	PASS	AC=1;AF=0.614;AN=2;DP=478;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant9-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant24-variant25-variant26-variant27-variant30-variant33-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:317,0,256:1,6,1,9
chr2	152436012	.	T	G	139.08	DRAGENHardSNP	AC=1;AF=0.658;AN=2;DP=529;FractionInformativeReads=1;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:16,10:26:99:179,0,391:4,12,4,6
chr2	152466728	.	T	C	1239.24	PASS	AC=1;AF=0.615;AN=2;DP=855;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,17:37:99:513,0,548:6,14,3,14
chr2	152472417	.	C	T	761.92	PASS	AC=1;AF=0.6;AN=2;DP=682;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant7-variant10-variant11-variant14-variant15-variant16-variant18-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant33-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,16:26:99:541,0,282:8,2,14,2
chr2	152474001	.	A	G	255.88	PASS	AC=1;AF=0.604;AN=2;DP=773;set=variant-variant2-variant3-variant7-variant11-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant34-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:141,0,231:1,7,1,6
chr2	152481977	.	A	G	247.66	PASS	AC=1;AF=0.763;AN=2;DP=650;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,10:14:99:367,0,141:3,1,9,1
chr2	152487574	.	T	C	1160.89	PASS	AC=1;AF=0.593;AN=2;DP=2339;MQ=60;set=variant-variant2-variant3-variant7-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,57:100:99:1489,0,1254:30,13,34,23
chr2	152490219	.	A	G	1932.2	PASS	AC=1;AF=0.75;AN=2;DP=6932;set=variant-variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,84:178:99:2132,0,2164:46,48,39,45
chr2	152490458	.	A	G	3687.28	PASS	AC=2;AF=1;AN=2;DP=4835;FS=0;MQ=60;MQRankSum=-1.1;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3534,330,0:0,0,50,60
chr2	152496038	.	G	A	93.22	PASS	AC=1;AF=0.556;AN=2;DP=52;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant12-variant15-variant22-variant28-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,5:7:59:163,0,59:0,2,1,4
chr2	152496526	.	A	G	1142.58	PASS	AC=1;AF=0.538;AN=2;DP=950;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant9-variant10-variant12-variant15-variant18-variant22-variant28-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,43:75:99:1107,0,779:13,19,16,27
chr2	152500449	.	C	G	1579.5	PASS	AC=1;AF=0.717;AN=2;DP=2683;set=variant2-variant4-variant8-variant13-variant14-variant17-variant19-variant20-variant21-variant23-variant27-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:67,54:121:99:1613,0,1823:31,36,24,30
chr2	152511778	.	A	C	793.99	PASS	AC=1;AF=0.538;AN=2;DP=512;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant9-variant10-variant12-variant15-variant18-variant22-variant28-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:20,12:32:99:319,0,477:13,7,9,3
chr2	152512992	.	A	T	1100.13	PASS	AC=1;AF=0.5;AN=2;DP=366;MQ=60;set=variant5-variant9-variant15-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,30:55:99:763,0,804:3,22,10,20
chr2	152514690	.	CTT	C	335.82	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=0;MQ=60;set=variant5-variant9-variant15-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:99:214,0,127:0,4,1,5
chr2	152520027	.	A	G	813.64	PASS	AC=1;AF=0.536;AN=2;DP=1001;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant9-variant10-variant12-variant15-variant18-variant22-variant28-variant33-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,33:67:99:979,0,965:23,11,25,8
chr2	152521096	.	C	T	1092.49	PASS	AC=1;AF=0.536;AN=2;DP=1147;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant5-variant9-variant10-variant12-variant15-variant18-variant22-variant28-variant33-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,23:55:99:595,0,823:17,15,14,9
chr2	152527572	.	C	T	1426.65	PASS	AC=1;AF=0.849;AN=2;DP=4154;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:45,46:91:99:1056,0,1199:25,20,26,20
chr2	152531077	.	A	G	1256.89	PASS	AC=2;AF=0.898;AN=2;DP=6136;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3356,333,0:0,0,55,56
chr2	152536498	.	T	A	1858.73	PASS	AC=1;AF=0.833;AN=2;DP=5147;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:83,31:114:99:612,0,2244:32,51,13,18
chr2	152537351	.	C	T	1006.99	PASS	AC=1;AF=0.5;AN=2;DP=1154;MQ=60;set=variant5-variant9-variant15-variant18-variant22-variant32-variant33-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,20:63:99:428,0,1130:19,24,8,12
chr2	152552062	.	A	C	874.75	PASS	AC=1;AF=0.81;AN=2;DP=4740;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,35:103:99:961,0,1847:33,35,23,12
chr2	152566433	.	A	G	193.25	PASS	AC=1;AF=0.833;AN=2;DP=1803;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:581,0,832:6,21,7,16
chr2	152573902	.	A	AGGC	2481.32	PASS	AC=1;AF=0.833;AN=2;DP=4489;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,34:84:99:1284,0,2267:31,19,26,8
chr2	152573981	.	A	G	2053.52	PASS	AC=1;AF=0.833;AN=2;DP=6257;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:90,68:158:99:1472,0,2083:41,49,35,33
chr2	152581866	.	T	C	884.19	PASS	AC=2;AF=0.92;AN=2;DP=3599;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2226,216,0:0,0,45,27
chr2	152584153	.	A	C	1373.62	PASS	AC=2;AF=0.932;AN=2;DP=4325;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,74:74:99:2391,221,0:0,0,51,23
chr2	152590120	.	TA	T	691.99	PASS	AC=1;AF=0.5;AN=2;DP=257;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant15-variant18-variant22-variant33-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:550,0,437:11,2,14,2
chr2	152655471	.	C	T	5706.59	PASS	AC=1;AF=0.845;AN=2;DP=18987;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:221,180:401:99:4353,0,5534:118,103,104,76
chr2	152655652	.	G	A	4197.28	PASS	AC=1;AF=0.55;AN=2;DP=4098;MQ=60;set=variant5-variant9-variant15-variant18-variant22-variant33-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:215,155:370:99:3734,0,5938:98,117,67,88
chr2	152656758	.	G	GACA	2805.73	PASS	AC=1;AF=0.845;AN=2;DP=5671;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,58:108:99:1535,0,1201:26,24,29,29
chr2	152656759	.	A	ACAG	1129.09	PASS	AC=1;AF=0.55;AN=2;DP=1293;MQ=60;set=variant5-variant9-variant15-variant18-variant22-variant33-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:63,50:113:99:1194,0,1579:33,30,26,24
chr2	152657055	.	C	T	4238.38	PASS	AC=2;AF=0.932;AN=2;DP=13258;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,249:249:99:7791,745,0:0,0,138,111
chr2	152657849	.	T	A	6898.59	PASS	AC=1;AF=0.845;AN=2;DP=19778;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:208,206:414:99:5358,0,5018:95,113,94,112
chr2	152684704	.	AC	ACC,A	1010.32	PASS	AC=2,0;AF=0.886,0.011;AN=2;DP=6019;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:110:99:0,5,49,56
chr2	152685113	.	A	T	115.69	PASS	AC=1;AF=0.857;AN=2;DP=554;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:73:73,0,88:1,4,2,2
chr2	152690248	.	G	A	3916.04	PASS	AC=2;AF=0.977;AN=2;DP=6474;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:3847,386,0:0,0,57,72
chr2	152690860	.	T	C	5570.43	PASS	AC=1;AF=0.5;AN=2;DP=458;FS=1.112;FractionInformativeReads=1;MQ=60;MQRankSum=1.573;QD=12.16;ReadPosRankSum=-1.823;SOR=0.814;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:233,225:458:99:5599,0,5905:128,105,130,95
chr2	152691829	.	C	G	5260.77	PASS	AC=1;AF=0.563;AN=2;DP=6526;MQ=60;set=variant-variant2-variant8-variant9-variant10-variant12-variant13-variant22-variant26-variant28-variant29-variant30-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:250,212:462:99:4998,0,6661:117,133,107,105
chr2	152694131	.	G	GT	1820.3	PASS	AC=1;AF=0.5;AN=2;DP=197;FS=7.172;FractionInformativeReads=0.975;MQ=60;MQRankSum=-0.919;QD=9.24;ReadPosRankSum=-0.381;SOR=0.373;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:100,92:192:99:1858,0,2234:60,40,46,46
chr2	152694349	.	A	C	1381.61	PASS	AC=1;AF=0.5;AN=2;DP=106;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.679;QD=13.03;ReadPosRankSum=-2.372;SOR=0.634;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,47:106:99:1410,0,1521:23,36,19,28
chr2	152695105	.	T	A	2095.63	PASS	AC=1;AF=0.5;AN=2;DP=198;FS=1.128;FractionInformativeReads=1;MQ=60;MQRankSum=-0.425;QD=10.58;ReadPosRankSum=2.124;SOR=0.596;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:115,83:198:99:2124,0,3021:68,47,47,36
chr2	152695191	.	C	T	2129.84	PASS	AC=1;AF=0.528;AN=2;DP=6160;set=variant-variant2-variant8-variant9-variant10-variant12-variant13-variant21-variant22-variant26-variant27-variant28-variant29-variant30-variant37-variant39-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:177,106:283:99:1813,0,4590:92,85,59,47
chr2	152695481	.	AT	A	2257.76	PASS	AC=1;AF=0.5;AN=2;DP=241;FS=3.811;FractionInformativeReads=0.909;MQ=60;MQRankSum=-1.826;QD=9.37;ReadPosRankSum=2.394;SOR=0.971;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:114,105:219:99:2295,0,2524:56,58,45,60
chr2	152729138	.	T	C	319.62	PASS	AC=1;AF=0.989;AN=2;DP=369;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.322;ReadPosRankSum=1.221;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:111,0,145:0,5,0,3
chr2	152739667	.	C	A	345.23	PASS	AC=1;AF=0.5;AN=2;DP=30;FS=4.091;FractionInformativeReads=1;MQ=60;MQRankSum=0.913;QD=11.51;ReadPosRankSum=0.498;SOR=0.144;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:373,0,468:13,2,10,5
chr2	152827973	.	A	G	3458.86	PASS	AC=1;AF=0.909;AN=2;DP=6015;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,59:112:99:1659,0,1415:33,20,38,21
chr2	152828281	.	C	G	1319.89	PASS	AC=1;AF=0.909;AN=2;DP=1424;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:15,19:34:99:550,0,435:3,12,5,14
chr2	152954985	.	G	C	1265.52	PASS	AC=1;AF=0.6;AN=2;DP=815;FractionInformativeReads=1;MQ=60;set=variant3-variant7-variant8-variant20-variant23-variant26-variant28-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,41:76:99:1236,0,958:11,24,19,22
chr2	152955084	.	A	C	214.07	PASS	AC=1;AF=0.5;AN=2;DP=1897;set=variant-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant17-filterInvariant18-filterInvariant20-filterInvariant21-filterInvariant24-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,17:56:99:514,0,5280:12,27,17,0
chr2	152955090	.	A	C	186.8	PASS	AC=1;AF=0.5;AN=2;DP=2021;set=variant-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant17-variant18-variant20-variant21-filterInvariant24-filterInvariant27-variant28-filterInvariant29-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:45,16:61:99:471,0,6474:17,28,16,0
chr2	152955094	.	A	C	176.66	PASS	AC=1;AF=0.5;AN=2;DP=1979;set=variant-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant13-variant14-filterInvariant15-filterInvariant17-variant18-variant20-filterInvariant24-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant33-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:54,14:68:99:455,0,6546:22,32,14,0
chr2	152955098	.	A	C	173.65	PASS	AC=1;AF=0.5;AN=2;DP=2105;set=variant-filterInvariant4-variant5-variant6-filterInvariant10-filterInvariant11-variant13-variant14-filterInvariant15-filterInvariant17-variant18-filterInvariant20-variant21-filterInvariant24-filterInvariant27-variant28-variant29-filterInvariant33-variant34-filterInvariant35-filterInvariant36-filterInvariant38-filterInvariant39-filterInvariant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:56,14:70:99:404,0,6714:24,32,14,0
chr2	152955100	.	T	C	560.16	PASS	AC=1;AF=0.5;AN=2;DP=788;FractionInformativeReads=1;set=variant10-variant11-variant13-variant14-variant18-filterInvariant20-variant29-filterInvariant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:58,13:71:99:398,0,6758:25,33,13,0
chr2	152955101	.	G	C	544.12	PASS	AC=1;AF=0.5;AN=2;DP=795;FractionInformativeReads=1;set=variant10-variant11-variant13-variant14-variant18-filterInvariant20-variant29-filterInvariant35-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:59,12:71:99:365,0,6761:26,33,12,0
chr2	152976002	.	G	C	5503.99	PASS	AC=1;AF=0.6;AN=2;DP=3707;MQ=60;set=variant7-variant8-variant12-variant20-variant23-variant26-variant28-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:188,170:358:99:4476,0,5234:103,85,98,72
chr2	152976703	.	T	A	1940.76	PASS	AC=1;AF=0.5;AN=2;DP=3391;set=variant4-variant7-variant8-variant11-variant12-variant14-variant20-variant22-variant23-filterInvariant26-filterInvariant28-variant30-filterInvariant31-variant32-variant37-variant38-variant41-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:63,44:107:99:1299,0,1752:28,35,19,25
chr2	152976909	.	GAA	G,GA	1934.76	PASS	AC=0,1;AF=0.154,0.385;AN=2;DP=10404;set=variant-variant2-variant3-variant4-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-filterInvariant17-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:155:99:57,38,45,15
chr2	152988610	.	C	CT	2586.62	PASS	AC=1;AF=0.632;AN=2;DP=2778;MQ=60;set=variant4-variant7-variant8-variant11-variant12-variant14-variant20-variant22-variant23-variant26-variant28-variant30-variant31-variant32-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:71,59:130:99:1803,0,2268:30,41,27,32
chr2	152991915	.	AT	A	218.52	PASS	AC=1;AF=0.6;AN=2;DP=110;MQ=60;set=variant7-variant8-variant12-variant20-variant23-variant26-variant28-variant31-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:46:188,0,46:2,0,5,1
chr2	152992237	.	G	A	248.54	PASS	AC=1;AF=0.639;AN=2;DP=235;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant8-variant12-variant14-variant20-variant22-variant23-variant26-variant28-variant30-variant31-variant32-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:115,0,117:1,3,1,3
chr2	153000337	.	T	A	2206.26	PASS	AC=1;AF=0.645;AN=2;DP=2073;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,35:57:99:847,0,506:13,9,21,14
chr2	153191866	.	A	G	1883.05	PASS	AC=1;AF=0.989;AN=2;DP=4361;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:45,23:68:99:586,0,1118:24,21,14,9
chr2	153399497	.	A	C	746.07	PASS	AC=1;AF=0.581;AN=2;DP=1044;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,19:44:99:476,0,662:10,15,7,12
chr2	153399594	.	G	A	103.54	PASS	AC=2;AF=0.905;AN=2;DP=343;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:456,33,0:0,0,0,11
chr2	153415170	.	A	C	316.35	PASS	AC=1;AF=0.706;AN=2;DP=625;MQ=60;set=variant-variant2-variant3-variant4-variant8-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,8:20:99:292,0,439:10,2,8,0
chr2	153415244	.	T	C,TC	1461.97	PASS	AC=0,2;AF=0.622,0.232;AN=2;DP=2781;set=variant6-variant7-variant2-variant8-variant9-variant3-variant11-variant4-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant-variant29-variant10-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	2/2:49:93:2,0,27,20
chr2	153415376	.	T	G	2496.95	PASS	AC=2;AF=0.849;AN=2;DP=7170;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:3977,401,0:0,0,68,66
chr2	153417325	.	A	G	282.05	PASS	AC=2;AF=0.849;AN=2;DP=1576;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1425,120,0:0,0,30,10
chr2	153431964	.	CAA	C,CA	167.68	PASS	AC=0,2;AF=0.598,0.28;AN=2;DP=590;FS=0;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	2/2:9:27:0,0,1,8
chr2	153435434	.	C	T	1167.49	PASS	AC=2;AF=0.6;AN=2;DP=1522;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant18-variant19-variant25-variant29-variant30-variant32-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2049,206,0:0,0,34,35
chr2	153463984	.	TACACAC	TACAC,TAC,T,TACACACACACACAC,TACACACAC	668.95	PASS	AC=0,2,0,0,0;AF=0.419,0.407,0.023,0.012,0.012;AN=2;DP=1247;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:17:52:0,0,1,16
chr2	153468187	.	C	T	859.93	PASS	AC=1;AF=0.5;AN=2;DP=592;FractionInformativeReads=1;MQ=60;set=variant7-variant11-variant16-variant19-variant22-variant23-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,33:70:99:802,0,997:14,23,9,24
chr2	153471255	.	T	TCAAAA,A	296.9	PASS	AC=2,0;AF=0.571,0.071;AN=2;DP=62;FS=0;MQ=60;set=variant16-variant22-variant23-variant25-variant34-variant40-variant41	GT:DP:GQ:SB	1/1:5:18:0,0,4,1
chr2	153473435	.	G	A	239.43	PASS	AC=2;AF=0.696;AN=2;DP=337;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant30-variant32-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:414,36,0:0,0,9,3
chr2	153473492	.	G	A	331.66	PASS	AC=2;AF=0.577;AN=2;DP=491;MQ=60;set=variant5-variant7-variant11-variant13-variant16-variant18-variant19-variant22-variant23-variant25-variant34-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1383,123,0:0,0,30,11
chr2	153473521	.	A	C	1081.97	PASS	AC=2;AF=0.65;AN=2;DP=1025;MQ=60;set=variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant30-variant34-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,60:61:99:1889,173,0:0,1,41,19
chr2	153473794	.	T	G	738.42	PASS	AC=2;AF=0.632;AN=2;DP=575;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant10-variant11-variant12-variant13-variant16-variant18-variant19-variant20-variant22-variant23-variant25-variant30-variant34-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1268,90,0:0,0,1,29
chr2	153475263	.	GTA	G	403.55	PASS	AC=1;AF=0.5;AN=2;DP=87;FractionInformativeReads=1;MQ=60;set=variant5-variant18-variant19-variant25-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,10:21:99:387,0,457:9,2,7,3
chr2	153475556	.	T	C	1916.04	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=0.631;FractionInformativeReads=1;MQ=60;MQRankSum=1.708;QD=13.59;ReadPosRankSum=1.637;SOR=0.799;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,80:141:99:1944,0,1399:29,32,36,44
chr2	153476066	.	G	C,GCCA	826.25	PASS	AC=0,2;AF=0.018,0.911;AN=2;DP=476;set=variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:9:27:0,0,2,7
chr2	153478931	.	T	C	783.75	PASS	AC=2;AF=1;AN=2;DP=740;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.542;ReadPosRankSum=1.542;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:622,42,0:0,0,14,0
chr2	153481943	.	T	C	2484.43	PASS	AC=2;AF=1;AN=2;DP=3638;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2582,231,0:0,0,52,25
chr2	153482128	.	G	A	959.26	PASS	AC=1;AF=0.5;AN=2;DP=585;MQ=60;set=variant5-variant10-variant11-variant12-variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:43,40:83:99:1034,0,1090:15,28,14,26
chr2	153483257	.	T	C	278.62	PASS	AC=1;AF=0.758;AN=2;DP=522;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:50:402,0,50:1,2,3,9
chr2	153484685	.	G	A	400.38	PASS	AC=1;AF=0.75;AN=2;DP=441;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:237,0,285:8,1,7,3
chr2	153492910	.	G	T	1102.91	PASS	AC=1;AF=0.905;AN=2;DP=3701;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:43,38:81:99:960,0,1113:22,21,24,14
chr2	153497168	.	C	T	1470.73	PASS	AC=2;AF=1;AN=2;DP=1443;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:83:899,83,0:0,0,21,7
chr2	153501958	.	G	T	799.85	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.189;QD=13.56;ReadPosRankSum=-1.097;SOR=0.618;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,34:59:99:828,0,643:16,9,21,13
chr2	153504552	.	G	A	7270.45	PASS	AC=1;AF=0.7;AN=2;DP=5006;set=variant2-variant3-variant5-variant6-variant7-variant10-variant11-variant12-variant13-variant17-variant20-variant21-variant24-variant30-variant31-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:92,121:213:99:3001,0,2282:47,45,56,65
chr2	153505003	.	C	T	3049.94	PASS	AC=1;AF=0.863;AN=2;DP=8437;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:94,82:176:99:2291,0,2694:48,46,44,38
chr2	153509557	.	G	T	465.78	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=1.77;FractionInformativeReads=1;MQ=60;MQRankSum=-0.732;QD=19.41;ReadPosRankSum=-0.381;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,14:24:99:494,0,281:3,7,3,11
chr2	153509899	.	G	GT	2378.18	PASS	AC=1;AF=0.863;AN=2;DP=8550;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,98:185:99:2415,0,2079:53,34,58,40
chr2	153511485	.	GAAT	G	1811.02	PASS	AC=1;AF=0.5;AN=2;DP=98;FS=2.653;FractionInformativeReads=0.959;MQ=60;MQRankSum=-1.615;QD=18.48;ReadPosRankSum=0.571;SOR=0.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,48:94:99:1848,0,2251:26,20,24,24
chr2	153511786	.	G	A	2378.31	PASS	AC=1;AF=0.863;AN=2;DP=8215;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:120,84:204:99:2031,0,3330:53,67,39,45
chr2	153514583	.	G	C	559.55	PASS	AC=1;AF=0.863;AN=2;DP=1709;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,20:40:99:528,0,606:5,15,6,14
chr2	153519524	.	A	G	729.46	PASS	AC=1;AF=0.863;AN=2;DP=1870;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:478,0,618:16,10,13,7
chr2	153520465	.	A	G	407.59	PASS	AC=1;AF=0.5;AN=2;DP=58;FS=2.475;FractionInformativeReads=1;MQ=60;MQRankSum=-0.227;QD=7.03;ReadPosRankSum=-2.546;SOR=1.21;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,18:58:99:436,0,1129:22,18,12,6
chr2	153520782	.	A	G	547.88	PASS	AC=1;AF=0.863;AN=2;DP=1462;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,14:37:99:398,0,678:9,14,4,10
chr2	153520819	.	C	A	390.41	PASS	AC=1;AF=0.863;AN=2;DP=696;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:206,0,402:4,8,2,5
chr2	153526595	.	T	A	41.73	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.423;QD=3.21;ReadPosRankSum=-1.944;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:70:70,0,372:9,1,3,0
chr2	153527691	.	G	A	83.18	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.922;QD=10.4;ReadPosRankSum=0.421;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:111,0,117:3,1,2,2
chr2	153529361	.	T	C	198.04	PASS	AC=1;AF=0.863;AN=2;DP=596;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,10:12:56:292,0,56:2,0,7,3
chr2	153535670	.	C	T	1213.46	PASS	AC=2;AF=1;AN=2;DP=1683;FS=0;MQ=60;MQRankSum=1.141;ReadPosRankSum=-0.38;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:887,93,0:0,0,16,15
chr2	153549814	.	G	C	585.19	PASS	AC=1;AF=0.863;AN=2;DP=1188;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:140,0,210:7,2,4,1
chr2	153572438	.	C	T	889.56	PASS	AC=2;AF=1;AN=2;DP=1110;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:717,60,0:0,0,15,5
chr2	153573528	.	C	T	922.53	PASS	AC=1;AF=0.792;AN=2;DP=2305;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:869,0,724:12,17,18,14
chr2	153574145	.	TG	TGG,TGGG,T	195.82	PASS	AC=1,0,0;AF=0.188,0.375,0.063;AN=2;DP=852;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant20-variant26-variant30-variant38-variant41	GT:DP:GQ:SB	0/1:46:99:13,17,10,6
chr2	153574157	.	A	G	188.88	PASS	AC=1;AF=0.5;AN=2;DP=301;set=variant5-filterInvariant6-variant10-variant12-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,21:59:99:274,0,859:15,23,15,6
chr2	153574568	.	A	G	871.44	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=0.802;FractionInformativeReads=1;MQ=60;MQRankSum=0.981;QD=10.02;ReadPosRankSum=1.083;SOR=0.573;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,42:87:99:900,0,1245:21,24,21,21
chr2	153574642	.	G	C	1008.43	PASS	AC=1;AF=0.863;AN=2;DP=3262;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,38:74:99:1016,0,937:20,16,20,18
chr2	153576548	.	G	GTCAGTCTTAAATGATTGGCTGCCAATGTTTCATTTCTTTATCATTCCCCTCCCCCCTTTTTTACCCTTTTTTGAATGTGCATGGAATGTAAATTA	1822.62	PASS	AC=1;AF=0.85;AN=2;DP=3650;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,32:61:99:1718,0,4766:8,21,13,19
chr2	153577013	.	G	A	1401.25	PASS	AC=1;AF=0.863;AN=2;DP=4056;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,39:86:99:978,0,1188:23,24,21,18
chr2	153617420	.	C	T	584.04	PASS	AC=2;AF=0.863;AN=2;DP=1397;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1374,117,0:0,0,28,11
chr2	154757320	.	G	A	896.75	PASS	AC=1;AF=0.779;AN=2;DP=1670;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,16:41:99:541,0,841:22,3,15,1
chr2	155099146	.	G	A	81.4	PASS	AC=1;AF=0.591;AN=2;DP=76;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant7-variant11-variant17-variant29-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,3:10:64:64,0,244:6,1,2,1
chr2	155265623	.	G	A	1093.52	PASS	AC=1;AF=0.658;AN=2;DP=2543;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,27:59:99:736,0,885:12,20,9,18
chr2	155294058	.	T	C	518.7	PASS	AC=1;AF=0.6;AN=2;DP=190;FractionInformativeReads=1;MQ=60;set=variant21-variant27-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:300,0,332:7,7,6,8
chr2	155294364	.	TAAA	TAA,TA,T	170.63	PASS	AC=2,0,0;AF=0.485,0.197,0.061;AN=2;DP=398;MQ=60;set=variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant37-variant39-variant41-variant42-variant43	GT:DP:GQ:SB	1/1:7:20:0,0,3,4
chr2	155295072	.	AT	A	1609.06	PASS	AC=1;AF=0.6;AN=2;DP=393;MQ=60;set=variant21-variant27-variant33-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:29,42:71:99:1070,0,666:21,8,29,13
chr2	155306839	.	T	A	200.41	PASS	AC=1;AF=0.5;AN=2;DP=12;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.831;QD=16.7;ReadPosRankSum=-1.134;SOR=1.085;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:229,0,140:4,1,6,1
chr2	155306885	.	C	T	673.84	PASS	AC=2;AF=1;AN=2;DP=1721;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1203,111,0:0,0,26,11
chr2	155307336	.	G	C	3748.1	PASS	AC=2;AF=1;AN=2;DP=5249;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:1,110:111:99:3596,321,0:1,0,59,51
chr2	155307832	.	T	C	2290.01	PASS	AC=1;AF=0.884;AN=2;DP=3480;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,46:85:99:1257,0,918:16,23,18,28
chr2	155308061	.	G	A	4613.17	PASS	AC=2;AF=0.65;AN=2;DP=9480;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,299:300:99:8960,889,0:0,1,168,131
chr2	155308898	.	C	T	3754.2	PASS	AC=2;AF=0.65;AN=2;DP=6605;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant34-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:5076,461,0:0,0,104,50
chr2	155555165	.	A	C	624.68	PASS	AC=1;AF=0.5;AN=2;DP=2085;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant13-filterInvariant15-variant16-filterInvariant17-variant18-filterInvariant19-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-variant28-filterInvariant29-variant30-filterInvariant31-filterInvariant32-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant40-filterInvariant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,14:49:99:109,0,1460:8,27,14,0
chr2	155555169	.	A	C	622.13	PASS	AC=1;AF=0.5;AN=2;DP=1472;set=filterInvariant-variant2-filterInvariant3-variant4-filterInvariant5-filterInvariant6-filterInvariant7-variant8-variant10-filterInvariant11-variant13-variant16-filterInvariant17-variant18-filterInvariant19-filterInvariant21-filterInvariant22-variant23-filterInvariant24-filterInvariant26-filterInvariant29-variant30-filterInvariant32-filterInvariant34-filterInvariant37-filterInvariant38-filterInvariant40-filterInvariant41-filterInvariant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,13:48:99:288,0,984:7,28,13,0
chr2	155712135	.	A	T	134.47	PASS	AC=1;AF=0.583;AN=2;DP=56;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant13-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:72:147,0,72:2,2,1,4
chr2	157181836	.	CTG	C	1147.79	PASS	AC=2;AF=0.638;AN=2;DP=3409;set=variant3-variant4-variant6-variant7-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:2637,230,0:0,0,39,38
chr2	157181925	.	A	C	1764.19	PASS	AC=1;AF=0.611;AN=2;DP=3185;MQ=60;set=variant3-variant4-variant6-variant7-variant10-variant12-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:52,50:102:99:1264,0,1416:24,28,23,27
chr2	157183211	.	TC	T	1178.32	PASS	AC=2;AF=0.756;AN=2;DP=3458;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,95:95:99:3386,286,0:0,0,58,37
chr2	157183635	.	C	T	128.66	PASS	AC=1;AF=0.694;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:166,0,241:3,6,1,5
chr2	157184832	.	C	G	191.59	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.184;QD=10.08;ReadPosRankSum=1.592;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:220,0,244:7,2,7,3
chr2	157189011	.	G	C	2910.73	PASS	AC=2;AF=1;AN=2;DP=4869;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2775,287,0:0,0,47,49
chr2	157189088	.	G	A	957.85	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.136;QD=13.68;ReadPosRankSum=2.482;SOR=0.779;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,38:70:99:986,0,814:15,17,17,21
chr2	157198532	.	C	G	73.71	PASS	AC=1;AF=0.659;AN=2;DP=247;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant10-variant12-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:163,0,240:5,4,2,3
chr2	157291952	.	GT	G,GTT	38.65	PASS	AC=0,1;AF=0.375,0.125;AN=2;DP=115;MQ=60;set=filterInvariant2-filterInvariant3-filterInvariant29-variant41	GT:DP:GQ:SB	0/2:11:96:3,3,4,1
chr2	157425502	.	CT	CTT,C,CTTT	398.01	PASS	AC=0,1,0;AF=0.488,0.024,0.012;AN=2;DP=2183;set=variant-variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant34-filterInvariant35-variant36-variant37-variant38-variant39-variant40-filterInvariant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:31:73:5,18,2,6
chr2	157427593	.	T	C	1020.26	PASS	AC=2;AF=0.989;AN=2;DP=1581;MQ=60;MQRankSum=-0.739;ReadPosRankSum=-0.849;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:514,48,0:0,0,12,4
chr2	157435346	.	GA	G,GAA	141.9	PASS	AC=1,0;AF=0.25,0.25;AN=2;DP=21;FS=0;MQ=60;set=variant41-variant42	GT:DP:GQ:SB	0/1:13:99:5,1,6,1
chr2	157439857	.	A	G	10260.5	PASS	AC=2;AF=0.989;AN=2;DP=12106;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,236:236:99:7213,706,0:0,0,130,106
chr2	157441664	.	G	C	7394.14	PASS	AC=2;AF=0.633;AN=2;DP=7065;MQ=60;set=variant3-variant6-variant7-variant8-variant11-variant19-variant20-variant25-variant28-variant30-variant33-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,399:399:99:11875,1196,0:0,0,210,189
chr2	157442253	.	G	A	3852.6	PASS	AC=2;AF=0.633;AN=2;DP=3032;MQ=60;set=variant3-variant6-variant7-variant8-variant11-variant19-variant20-variant25-variant28-variant30-variant33-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,150:150:99:5607,450,0:0,0,80,70
chr2	157467040	.	A	G	340.23	PASS	AC=1;AF=0.588;AN=2;DP=501;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant11-variant15-variant19-variant20-variant21-variant25-variant30-variant33-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,11:25:99:297,0,374:10,4,9,2
chr2	157467106	.	T	C	819.73	PASS	AC=1;AF=0.583;AN=2;DP=1104;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant11-variant15-variant19-variant20-variant21-variant25-variant28-variant30-variant33-variant35-variant38-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,24:49:99:633,0,614:14,11,14,10
chr2	158114498	.	T	TCTGCTGCTG,TCTGCTGCTGCTGCTG	1782.15	PASS	AC=1,0;AF=0.5,0.038;AN=2;DP=1105;set=variant3-variant8-variant9-variant10-variant13-variant18-variant19-variant21-variant23-variant29-variant34-variant41-variant42	GT:DP:GQ:SB	0/1:69:99:19,18,14,18
chr2	158116128	.	C	T	464.49	PASS	AC=1;AF=0.5;AN=2;DP=94;MQ=60;set=variant18-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,11:28:99:370,0,589:3,14,1,10
chr2	158140717	.	C	T	2283.01	PASS	AC=1;AF=0.588;AN=2;DP=1017;MQ=60;set=variant-variant2-variant3-variant9-variant10-variant15-variant18-variant21-variant25-variant26-variant29-variant31-variant36-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:32,23:55:99:639,0,917:21,11,15,8
chr2	158141079	.	T	C	678.53	PASS	AC=1;AF=0.583;AN=2;DP=391;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant9-variant10-variant15-variant18-variant21-variant25-variant26-variant29-variant31-variant34-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:103,0,399:1,10,1,3
chr2	158142486	.	T	C	451.14	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=1.556;FractionInformativeReads=1;MQ=60;MQRankSum=-0.264;QD=14.1;ReadPosRankSum=-2.001;SOR=1.204;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,17:32:99:479,0,376:10,5,13,4
chr2	158155849	.	T	G	94.73	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:94:94,0,361:9,2,3,1
chr2	158157361	.	C	T	4255.61	PASS	AC=1;AF=0.943;AN=2;DP=6913;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:77,81:158:99:2064,0,1996:37,40,44,37
chr2	158162327	.	G	A	967.72	PASS	AC=1;AF=0.5;AN=2;DP=81;FS=1.821;FractionInformativeReads=1;MQ=60;MQRankSum=0.997;QD=11.95;ReadPosRankSum=0.629;SOR=0.478;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:39,42:81:99:996,0,928:17,22,21,21
chr2	158162475	.	C	T	897.73	PASS	AC=1;AF=0.943;AN=2;DP=912;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:312,0,248:2,7,2,8
chr2	158162521	.	T	G	196.77	PASS	AC=1;AF=0.953;AN=2;DP=332;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,3:7:99:114,0,116:1,3,0,3
chr2	158165004	.	C	T	350.27	PASS	AC=1;AF=0.932;AN=2;DP=346;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:1,7:8:22:247,0,22:1,0,6,1
chr2	158170723	.	TA	T,TAAA	135.34	PASS	AC=1,0;AF=0.487,0.013;AN=2;DP=2629;set=variant-filterInvariant3-variant4-variant5-filterInvariant6-variant7-filterInvariant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-filterInvariant19-variant20-filterInvariant21-variant22-variant23-filterInvariant24-filterInvariant25-variant26-variant27-filterInvariant28-variant29-filterInvariant31-variant32-variant33-variant34-variant35-filterInvariant36-variant37-variant38-variant39-variant40-filterInvariant41-variant44	GT:DP:GQ:SB	0/1:39:99:2,26,0,11
chr2	158177489	.	G	A	4666.9	PASS	AC=1;AF=0.5;AN=2;DP=2002;MQ=60;set=variant4-variant15-variant34-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:170,140:310:99:3462,0,4231:73,97,61,79
chr2	158271093	.	CAGAGAGAGAG	CAGAGAGAGAGAG,C,CAG,CAGAGAGAGAGAGAGAGAG,CAGAGAGAGAGAGAG,CAGAGAGAGAGAGAGAG,CAGAGAGAGAGAGAGAGAGAGAG,CAGAGAG,CAGAGAGAG	505.2	PASS	AC=1,0,0,0,0,0,0,0,1;AF=0.489,0.011,0.011,0.023,0.045,0.023,0.023,0.011,0.011;AN=2;DP=1735;set=Intersection	GT:DP:GQ:SB	9/1:28:99:5,1,20,2
chr2	158271512	.	C	T	1660.6	PASS	AC=1;AF=0.955;AN=2;DP=1613;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:22,14:36:99:478,0,639:9,13,4,10
chr2	158283710	.	A	G	262.05	PASS	AC=2;AF=0.953;AN=2;DP=413;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:321,27,0:0,0,7,2
chr2	158284056	.	C	T	278.66	PASS	AC=2;AF=0.989;AN=2;DP=479;MQ=60;MQRankSum=0.342;ReadPosRankSum=1.61;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:404,33,0:0,0,2,9
chr2	158291107	.	T	TAG,TAGAG	331.8	PASS	AC=2,0;AF=0.636,0.011;AN=2;DP=634;MQ=60;set=Intersection	GT:DP:GQ:SB	1/1:9:7:1,0,5,3
chr2	158291188	.	A	C	1632.78	PASS	AC=2;AF=0.955;AN=2;DP=2075;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1195,125,0:0,0,23,19
chr2	158291353	.	TCTCTCTCTCACACACA	T	63.99	PASS	AC=2;AF=1;AN=2;DP=10;FS=0;FractionInformativeReads=0.3;MQ=60;QD=6.4;SOR=1.179;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:101,9,0:0,0,1,2
chr2	158388885	.	GT	G,GTT	163.76	PASS	AC=1,0;AF=0.414,0.1;AN=2;DP=1285;set=variant-filterInvariant2-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-filterInvariant24-filterInvariant25-filterInvariant27-filterInvariant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant41-variant42-filterInvariant43	GT:DP:GQ:SB	0/1:24:99:13,2,6,3
chr2	158395079	.	C	G	1261.16	PASS	AC=2;AF=0.898;AN=2;DP=2270;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1230,117,0:0,0,26,13
chr2	158397523	.	G	C	301.87	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.535;QD=13.12;ReadPosRankSum=2.362;SOR=0.646;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:330,0,204:6,3,9,5
chr2	158397792	.	ATAAAT	A	289.79	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=0;FractionInformativeReads=0.846;MQ=60;MQRankSum=0.566;QD=22.29;ReadPosRankSum=1.708;SOR=1.802;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,8:11:99:327,0,182:0,3,0,8
chr2	158400908	.	C	T	618.24	PASS	AC=2;AF=0.875;AN=2;DP=1627;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1192,104,0:0,0,25,10
chr2	158401137	.	T	C	1742.28	PASS	AC=1;AF=0.841;AN=2;DP=2283;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,17:43:99:434,0,783:6,20,5,12
chr2	158406939	.	A	C	682.04	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=1.116;FractionInformativeReads=1;MQ=60;MQRankSum=1.824;QD=12.87;ReadPosRankSum=0.187;SOR=0.926;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,27:53:99:710,0,718:9,17,8,19
chr2	158412542	.	T	C	504.75	PASS	AC=1;AF=0.712;AN=2;DP=591;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:228,0,118:4,1,6,2
chr2	158443889	.	G	A	2913.88	PASS	AC=1;AF=0.672;AN=2;DP=2517;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:16,42:58:99:1042,0,382:5,11,19,23
chr2	158484770	.	T	A	296.89	PASS	AC=2;AF=0.736;AN=2;DP=1392;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant15-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:894,87,0:0,0,17,12
chr2	158593357	.	A	G	2499.06	PASS	AC=1;AF=0.615;AN=2;DP=4962;MQ=60;set=variant-variant3-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant22-variant25-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant38-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:74,95:169:99:2614,0,1882:33,41,46,49
chr2	158593998	.	C	A	1338.61	PASS	AC=1;AF=0.5;AN=2;DP=100;FS=2.566;FractionInformativeReads=1;MQ=60;MQRankSum=-0.824;QD=13.39;ReadPosRankSum=-1.811;SOR=0.963;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:52,48:100:99:1367,0,1405:26,26,27,21
chr2	158617525	.	G	A	1052.97	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=2.368;FractionInformativeReads=1;MQ=60;MQRankSum=1.59;QD=16.71;ReadPosRankSum=-1.864;SOR=0.395;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,45:63:99:1081,0,389:7,11,22,23
chr2	158617814	.	A	G	256.45	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.666;QD=28.49;ReadPosRankSum=-1.179;SOR=2.093;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:60:285,0,60:0,2,0,7
chr2	158626980	.	C	T	3016.07	PASS	AC=2;AF=0.966;AN=2;DP=5050;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,111:111:99:3316,331,0:0,0,49,62
chr2	158630811	.	G	A	714.69	PASS	AC=1;AF=0.5;AN=2;DP=113;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,29:56:99:825,0,722:10,17,9,20
chr2	158636910	.	G	A	2451.68	PASS	AC=2;AF=0.763;AN=2;DP=5893;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4584,457,0:0,0,94,59
chr2	158637137	.	A	G	1141.67	PASS	AC=2;AF=0.671;AN=2;DP=3597;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:3,80:83:99:1901,185,0:1,2,34,46
chr2	158655883	.	C	CAA,CA	792.64	PASS	AC=2,0;AF=0.793,0.061;AN=2;DP=1024;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:17:54:0,0,12,5
chr2	158674942	.	G	A	431.37	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=5.287;FractionInformativeReads=1;MQ=60;MQRankSum=0.35;QD=13.07;ReadPosRankSum=2.155;SOR=0.929;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,20:33:99:460,0,293:5,8,12,8
chr2	158694818	.	T	G	193.55	PASS	AC=1;AF=0.932;AN=2;DP=593;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:8,4:12:99:103,0,204:4,4,2,2
chr2	158974155	.	T	G	418.48	PASS	AC=1;AF=0.708;AN=2;DP=429;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,9:12:78:325,0,78:3,0,8,1
chr2	158978178	.	C	G	972.63	PASS	AC=1;AF=0.73;AN=2;DP=825;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:380,0,197:1,6,4,10
chr2	158992364	.	C	T	1602.23	PASS	AC=1;AF=0.5;AN=2;DP=336;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:101,106:207:99:2609,0,2665:41,60,44,62
chr2	159028317	.	T	G	2320.89	PASS	AC=1;AF=0.5;AN=2;DP=445;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:100,114:214:99:2648,0,2339:49,51,50,64
chr2	159028800	.	A	G	1247.04	PASS	AC=2;AF=0.989;AN=2;DP=1307;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:755,66,0:0,0,6,16
chr2	159035344	.	A	T,AT	1240.41	PASS	AC=0,1;AF=0.036,0.5;AN=2;DP=602;MQ=60;set=variant13-variant17-variant19-variant20-variant21-variant27-variant28-variant31-variant36-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/2:35:99:16,6,8,5
chr2	159077019	.	A	C	1689.18	PASS	AC=1;AF=0.744;AN=2;DP=2222;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:25,27:52:99:662,0,701:14,11,17,10
chr2	159107374	.	T	C	536.64	PASS	AC=1;AF=0.5;AN=2;DP=78;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.471;QD=6.88;ReadPosRankSum=-0.161;SOR=0.591;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:53,25:78:99:565,0,1365:24,29,12,13
chr2	159166069	.	T	C	3065.75	PASS	AC=1;AF=0.93;AN=2;DP=2889;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,32:60:99:907,0,743:9,19,12,20
chr2	159237284	.	T	C	75.74	PASS	AC=1;AF=0.605;AN=2;DP=150;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant7-variant9-variant10-variant13-variant15-variant16-variant20-variant24-variant25-variant26-variant28-variant34-variant35-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:77:79,0,77:2,0,2,1
chr2	159312733	.	C	T	1365.73	PASS	AC=1;AF=0.75;AN=2;DP=4467;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,49:89:99:1256,0,1038:22,18,25,24
chr2	159312776	.	G	T	5361.51	PASS	AC=1;AF=0.588;AN=2;DP=2210;MQ=60;set=variant4-variant8-variant11-variant13-variant17-variant18-variant21-variant24-variant25-variant27-variant28-variant31-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,62:119:99:2380,0,2271:32,25,33,29
chr2	159312777	.	A	T	5361.51	PASS	AC=1;AF=0.588;AN=2;DP=2227;MQ=60;set=variant4-variant8-variant11-variant13-variant17-variant18-variant21-variant24-variant25-variant27-variant28-variant31-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,61:120:99:2380,0,2271:34,25,33,28
chr2	159390154	.	A	G	40.75	PASS	AC=1;AF=0.5;AN=2;DP=7;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.198;QD=5.82;ReadPosRankSum=0.922;SOR=1.802;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,2:7:69:69,0,124:2,3,0,2
chr2	159434492	.	G	A	349.38	PASS	AC=2;AF=0.92;AN=2;DP=940;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:614,51,0:0,0,14,3
chr2	159434699	.	G	T	853.84	PASS	AC=1;AF=0.5;AN=2;DP=160;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,30:68:99:816,0,876:18,20,15,15
chr2	159434727	.	T	G	2641.27	PASS	AC=1;AF=0.588;AN=2;DP=1257;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant11-variant13-variant17-variant18-variant21-variant24-variant25-variant27-variant28-variant31-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,32:62:99:771,0,784:13,17,12,20
chr2	159434802	.	ATC	A	1738.81	PASS	AC=1;AF=0.588;AN=2;DP=667;MQ=60;set=variant4-variant8-variant11-variant13-variant17-variant18-variant21-variant24-variant25-variant27-variant28-variant31-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,12:35:99:407,0,871:9,14,4,8
chr2	159487743	.	C	G	729.49	PASS	AC=1;AF=0.5;AN=2;DP=54;FS=2.328;FractionInformativeReads=1;MQ=60;MQRankSum=1.54;QD=13.51;ReadPosRankSum=0.625;SOR=0.412;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,32:54:99:758,0,487:13,9,16,16
chr2	159487785	.	A	C	307.75	PASS	AC=1;AF=0.837;AN=2;DP=2335;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,22:55:99:469,0,834:14,19,8,14
chr2	159520085	.	G	C	350.88	PASS	AC=1;AF=0.75;AN=2;DP=1449;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,20:41:99:520,0,526:9,12,8,12
chr2	159522879	.	C	G	31.7	PASS	AC=1;AF=0.714;AN=2;DP=380;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:138,0,170:5,0,5,1
chr2	159525930	.	C	T	498.79	PASS	AC=1;AF=0.689;AN=2;DP=709;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:187,0,274:7,1,5,1
chr2	159525960	.	A	G	1482.17	PASS	AC=1;AF=0.583;AN=2;DP=651;MQ=60;set=variant4-variant8-variant11-variant13-variant17-variant18-variant21-variant24-variant25-variant27-variant28-variant31-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,15:32:99:449,0,498:13,4,12,3
chr2	159530651	.	A	T	685.62	PASS	AC=1;AF=0.707;AN=2;DP=1711;MQ=60;set=variant-variant2-variant3-variant7-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant20-variant21-variant23-variant24-variant26-variant29-variant30-variant32-variant33-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,31:59:99:848,0,749:9,19,9,22
chr2	159534863	.	A	G	182.57	PASS	AC=1;AF=0.744;AN=2;DP=484;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,4:13:99:133,0,291:8,1,4,0
chr2	159534874	.	C	T	196.62	PASS	AC=2;AF=0.898;AN=2;DP=650;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:608,48,0:0,0,14,2
chr2	159534889	.	C	T	302.31	PASS	AC=1;AF=0.711;AN=2;DP=719;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:191,0,508:13,2,6,0
chr2	159536978	.	G	A	586.02	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.215;QD=13.02;ReadPosRankSum=0.851;SOR=0.616;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:614,0,672:11,12,11,11
chr2	159537868	.	A	G	2961.84	PASS	AC=2;AF=0.886;AN=2;DP=9703;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,212:212:99:6402,633,0:0,0,114,98
chr2	159538210	.	C	T	4305.47	PASS	AC=2;AF=0.833;AN=2;DP=11327;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,229:229:99:7306,686,0:0,0,92,137
chr2	159538716	.	G	A	485.22	PASS	AC=2;AF=0.798;AN=2;DP=1957;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,47:47:99:1585,141,0:0,0,24,23
chr2	159538774	.	A	G	406.25	PASS	AC=2;AF=0.798;AN=2;DP=2621;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2119,186,0:0,0,32,30
chr2	159539434	.	G	A	369.36	PASS	AC=1;AF=0.679;AN=2;DP=139;FractionInformativeReads=1;MQ=60;set=variant4-variant8-variant21-variant22-variant23-variant25-variant27-variant29-variant31-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:99:188,0,147:0,4,3,5
chr2	159651734	.	A	G	546.66	PASS	AC=2;AF=0.833;AN=2;DP=1581;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,40:40:99:1313,120,0:0,0,28,12
chr2	159652231	.	G	T	146.89	PASS	AC=2;AF=0.843;AN=2;DP=470;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:434,33,0:0,0,1,10
chr2	159660645	.	TA	T	145.64	PASS	AC=2;AF=0.982;AN=2;DP=177;FS=0;MQRankSum=0.731;ReadPosRankSum=-0.731;set=variant2-variant3-variant4-variant5-variant6-variant7-variant11-variant14-variant15-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:87,9,0:0,0,3,0
chr2	159661077	.	C	T	821.34	PASS	AC=1;AF=0.734;AN=2;DP=555;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:352,0,247:0,7,1,9
chr2	159663599	.	T	C	854.83	PASS	AC=2;AF=0.76;AN=2;DP=1733;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant15-variant16-variant18-variant20-variant21-variant25-variant26-variant27-variant28-variant29-variant31-variant37-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1636,150,0:0,0,25,25
chr2	159672442	.	G	A	678.66	PASS	AC=2;AF=0.708;AN=2;DP=2537;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1976,189,0:0,0,23,40
chr2	159682761	.	C	CT	97.18	PASS	AC=2;AF=0.719;AN=2;DP=414;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:525,39,0:0,0,11,2
chr2	159710189	.	T	A	362.46	PASS	AC=2;AF=0.645;AN=2;DP=1329;set=variant-variant2-variant4-variant7-variant8-variant9-variant12-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:907,87,0:0,0,19,10
chr2	159710407	.	G	A	1744	PASS	AC=1;AF=0.5;AN=2;DP=133;FS=0;FractionInformativeReads=0.992;MQ=60;MQRankSum=-0.429;QD=13.11;ReadPosRankSum=0.589;SOR=0.747;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:58,74:132:99:1772,0,1326:29,29,38,36
chr2	159731466	.	A	G	2892.37	PASS	AC=1;AF=0.784;AN=2;DP=6087;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:52,52:104:99:1312,0,1424:30,22,28,24
chr2	159731728	.	A	G	1380.67	PASS	AC=1;AF=0.65;AN=2;DP=1770;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,26:49:99:789,0,612:7,16,7,19
chr2	159954420	.	C	T	872.52	PASS	AC=2;AF=0.526;AN=2;DP=861;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant10-variant12-variant15-variant16-variant17-variant20-variant24-variant28-variant30-variant34-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1704,159,0:0,0,15,38
chr2	159992572	.	C	T,CGT	569.91	PASS	AC=0,2;AF=0.685,0.204;AN=2;DP=285;FS=0;set=variant2-variant8-variant9-variant10-variant15-variant-variant16-variant18-variant20-variant21-variant4-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant37-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	2/2:17:54:0,0,13,4
chr2	160019863	.	A	G	2377.88	PASS	AC=2;AF=1;AN=2;DP=4375;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3338,330,0:0,0,50,60
chr2	160027587	.	G	GC	334.93	PASS	AC=2;AF=1;AN=2;DP=746;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:617,51,0:0,0,3,14
chr2	160033174	.	A	G	373.54	PASS	AC=2;AF=1;AN=2;DP=539;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:422,36,0:0,0,3,9
chr2	160034919	.	A	G	555.6	PASS	AC=2;AF=1;AN=2;DP=466;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:47:533,47,0:0,0,14,2
chr2	160035207	.	T	C	4084.74	PASS	AC=2;AF=1;AN=2;DP=8102;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:5164,477,0:0,0,74,85
chr2	160073837	.	T	C	649.73	PASS	AC=1;AF=0.5;AN=2;DP=68;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,13:32:99:380,0,608:16,3,11,2
chr2	160075886	.	G	GC	2347.28	PASS	AC=1;AF=0.662;AN=2;DP=6449;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:87,81:168:99:2252,0,2485:44,43,35,46
chr2	160076127	.	G	A	780.34	PASS	AC=1;AF=0.5;AN=2;DP=144;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,33:79:99:833,0,1244:25,21,15,18
chr2	160082354	.	C	T	2364.13	PASS	AC=1;AF=0.884;AN=2;DP=5329;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,81:140:99:1991,0,1533:25,34,36,45
chr2	160082384	.	T	A	943.15	PASS	AC=1;AF=0.684;AN=2;DP=3412;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,60:107:99:1518,0,1156:18,29,25,35
chr2	160084224	.	G	A	197.95	PASS	AC=1;AF=0.884;AN=2;DP=839;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,15:20:99:354,0,118:3,2,10,5
chr2	160084263	.	A	G	277.01	PASS	AC=1;AF=0.884;AN=2;DP=1540;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,19:30:99:551,0,356:9,2,11,8
chr2	160084534	.	A	G	182.19	PASS	AC=1;AF=0.884;AN=2;DP=726;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,19:25:99:543,0,148:1,5,6,13
chr2	160085245	.	C	T	173.23	PASS	AC=1;AF=0.5;AN=2;DP=53;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,22:34:99:668,0,308:8,4,18,4
chr2	160087410	.	C	T	1857.84	PASS	AC=1;AF=0.5;AN=2;DP=296;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:92,66:158:99:1710,0,2512:46,46,32,34
chr2	160087535	.	T	G	2677.22	PASS	AC=1;AF=0.884;AN=2;DP=7972;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:76,83:159:99:2025,0,1744:34,42,41,42
chr2	160087815	.	T	C	4946.5	PASS	AC=1;AF=0.884;AN=2;DP=17979;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:196,181:377:99:4588,0,5004:101,95,95,86
chr2	160088167	.	C	CCTTT	5388.14	PASS	AC=1;AF=0.884;AN=2;DP=9485;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:113,96:209:99:3651,0,5617:56,57,38,58
chr2	160088607	.	A	G	7043.8	PASS	AC=1;AF=0.662;AN=2;DP=16892;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:211,225:436:99:5557,0,5297:110,101,114,111
chr2	160088820	.	A	C	3023.12	PASS	AC=1;AF=0.5;AN=2;DP=531;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:152,135:287:99:3695,0,4288:60,92,61,74
chr2	160092387	.	GT	G	1461.55	PASS	AC=1;AF=0.724;AN=2;DP=3928;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,38:78:99:967,0,1007:16,24,16,22
chr2	160112881	.	G	T	1236.17	PASS	AC=1;AF=0.724;AN=2;DP=3785;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:47,40:87:99:895,0,1084:22,25,17,23
chr2	160128202	.	A	C	1486.95	PASS	AC=1;AF=0.5;AN=2;DP=712;FractionInformativeReads=1;MQ=60;set=variant13-variant19-variant21-variant22-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:57,41:98:99:987,0,1443:29,28,23,18
chr2	160128343	.	C	A	822.06	PASS	AC=1;AF=0.5;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant13-variant19-variant21-variant22-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:30,26:56:99:675,0,756:11,19,9,17
chr2	160132089	.	T	G	435.76	PASS	AC=1;AF=0.5;AN=2;DP=338;FractionInformativeReads=1;MQ=60;set=variant13-variant19-variant21-variant22-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,19:48:99:392,0,643:15,14,10,9
chr2	160132196	.	A	AC	592.48	PASS	AC=1;AF=0.893;AN=2;DP=813;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:351,0,205:5,4,6,8
chr2	160136337	.	G	A	882.45	PASS	AC=2;AF=1;AN=2;DP=962;FS=0;MQ=60;MQRankSum=-0.657;ReadPosRankSum=-0.179;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:906,87,0:0,0,18,11
chr2	160139048	.	C	T	76.96	PASS	AC=1;AF=0.5;AN=2;DP=42;FractionInformativeReads=1;MQ=60;set=variant19-variant21-variant22-variant41	GT:AD:DP:GQ:PL:SB	0/1:6,5:11:99:151,0,229:6,0,4,1
chr2	160142785	.	G	A	278.78	PASS	AC=1;AF=0.5;AN=2;DP=126;FractionInformativeReads=1;MQ=60;set=variant25-variant26-variant27-variant28-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,5:20:99:121,0,473:11,4,5,0
chr2	160143199	.	A	C	589.76	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=4.348;FractionInformativeReads=1;MQ=60;MQRankSum=0.074;QD=12.04;ReadPosRankSum=-0.599;SOR=1.316;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,17:49:99:618,0,1552:17,15,6,11
chr2	160143211	.	A	G	499.01	PASS	AC=1;AF=0.5;AN=2;DP=135;FractionInformativeReads=1;set=variant13-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:31,18:49:99:651,0,1564:15,16,7,11
chr2	160143360	.	C	T	553.77	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=1.518;FractionInformativeReads=1;MQ=60;MQRankSum=0.921;QD=19.78;ReadPosRankSum=-0.046;SOR=1.032;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,15:28:99:582,0,460:7,6,6,9
chr2	160143370	.	G	T	556.77	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=1.598;FractionInformativeReads=1;MQ=60;MQRankSum=0;QD=21.41;ReadPosRankSum=0.519;SOR=1.021;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,15:26:99:585,0,438:6,5,6,9
chr2	160143402	.	C	T	167.82	PASS	AC=1;AF=0.5;AN=2;DP=120;FractionInformativeReads=1;MQ=60;set=variant19-variant21-variant22-variant35-variant36-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,7:16:99:151,0,195:4,5,3,4
chr2	160176943	.	A	C	1496.62	PASS	AC=2;AF=0.989;AN=2;DP=2120;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1815,165,0:0,0,17,38
chr2	160182074	.	T	A	124.43	PASS	AC=2;AF=0.66;AN=2;DP=292;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant6-variant9-variant10-variant12-variant13-variant15-variant16-variant18-variant19-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:764,60,0:0,0,18,2
chr2	160182302	.	C	T	832.13	PASS	AC=2;AF=0.625;AN=2;DP=1603;MQ=60;set=variant5-variant6-variant15-variant16-variant18-variant19-variant24-variant25-variant26-variant27-variant28-variant36-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,92:92:99:2826,276,0:0,0,49,43
chr2	160203934	.	A	C,T	877.82	PASS	AC=1,1;AF=0.477,0.523;AN=2;DP=825;FS=0;MQ=60;set=Intersection	GT:DP:GQ:SB	1/2:19:99:0,0,15,4
chr2	160229783	.	G	A	119.69	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.851;QD=11.97;ReadPosRankSum=1.098;SOR=0.16;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,5:10:99:148,0,172:0,5,1,4
chr2	160231108	.	A	G	1977.98	PASS	AC=2;AF=0.795;AN=2;DP=1637;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1295,123,0:0,0,24,17
chr2	160231173	.	A	C	758.79	PASS	AC=1;AF=0.5;AN=2;DP=69;FS=1.99;FractionInformativeReads=1;MQ=60;MQRankSum=-1.811;QD=11;ReadPosRankSum=-0.728;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,32:69:99:787,0,890:17,20,17,15
chr2	160231347	.	T	TATGCAAAGTACTAGAAG	187.35	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=2.363;FractionInformativeReads=1;MQ=60;MQRankSum=0.177;QD=12.49;ReadPosRankSum=-0.766;SOR=1.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:225,0,1650:4,5,1,5
chr2	160241936	.	A	G	61.77	PASS	AC=1;AF=0.829;AN=2;DP=223;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,4:7:99:159,0,116:0,3,1,3
chr2	160243183	.	T	A	466.77	PASS	AC=1;AF=0.942;AN=2;DP=538;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,3:9:99:108,0,310:1,5,0,3
chr2	160243184	.	A	T	466.77	PASS	AC=1;AF=0.942;AN=2;DP=524;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:99:108,0,310:1,4,0,3
chr2	160261729	.	AC	A	547.73	PASS	AC=2;AF=1;AN=2;DP=350;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:100,9,0:0,0,1,2
chr2	160285575	.	C	T	755.05	PASS	AC=1;AF=0.676;AN=2;DP=778;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,22:33:99:594,0,273:8,3,13,9
chr2	160285660	.	T	A	1653.56	PASS	AC=1;AF=0.676;AN=2;DP=2186;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:40,39:79:99:938,0,793:20,20,22,17
chr2	160287504	.	A	C	1334.72	PASS	AC=1;AF=0.5;AN=2;DP=124;FS=0.662;FractionInformativeReads=1;MQ=60;MQRankSum=-0.208;QD=10.76;ReadPosRankSum=-1.014;SOR=0.771;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:66,58:124:99:1363,0,1697:34,32,31,27
chr2	160289911	.	A	G	172.82	PASS	AC=1;AF=0.5;AN=2;DP=378;MQ=60;set=variant2-variant8-variant11-variant16-variant19-variant22-variant26-variant27-variant28-variant33-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:251,0,310:0,8,1,7
chr2	160294779	.	T	C	327.08	PASS	AC=1;AF=0.5;AN=2;DP=524;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant11-variant16-variant19-variant22-variant26-variant27-variant28-variant33-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,19:40:99:491,0,532:14,7,14,5
chr2	160294842	.	A	G	847.68	PASS	AC=1;AF=0.5;AN=2;DP=1186;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant11-variant16-variant19-variant22-variant26-variant27-variant28-variant33-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:51,36:87:99:1036,0,1231:31,20,23,13
chr2	160295297	.	C	A	688.63	PASS	AC=1;AF=0.744;AN=2;DP=719;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:135,0,282:3,8,0,4
chr2	160295732	.	C	T	542.8	PASS	AC=1;AF=0.5;AN=2;DP=1070;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant11-variant16-variant19-variant22-variant26-variant27-variant28-variant33-variant36-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:39,36:75:99:943,0,1044:16,23,10,26
chr2	160304741	.	A	T	317.08	PASS	AC=1;AF=0.632;AN=2;DP=1180;FractionInformativeReads=1;set=variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:334,0,517:13,4,9,5
chr2	160412186	.	GTATAAGA	G	475.61	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=7.005;FractionInformativeReads=1;MQ=60;MQRankSum=-0.927;QD=19.82;ReadPosRankSum=0.695;SOR=2.925;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:513,0,944:9,2,13,0
chr2	160472950	.	C	T	1602.75	PASS	AC=2;AF=0.71;AN=2;DP=1381;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant21-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1424,138,0:0,0,27,19
chr2	160599493	.	A	G	584.71	PASS	AC=1;AF=0.667;AN=2;DP=118;FractionInformativeReads=1;MQ=60;set=variant9-variant11-variant21-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:323,0,195:6,2,9,3
chr2	160605268	.	T	C	2693.29	PASS	AC=2;AF=0.898;AN=2;DP=3979;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,97:97:99:2984,290,0:0,0,44,53
chr2	160605488	.	TC	T	46.08	PASS	AC=1;AF=0.5;AN=2;DP=42;set=variant9-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:13:102,0,13:1,1,0,7
chr2	160624689	.	T	G	1940.98	PASS	AC=1;AF=0.5;AN=2;DP=152;FS=2.894;FractionInformativeReads=1;MQ=60;MQRankSum=1.162;QD=12.77;ReadPosRankSum=-0.852;SOR=0.488;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,79:152:99:1969,0,1863:44,29,43,36
chr2	160625841	.	T	C	2375.6	PASS	AC=1;AF=0.5;AN=2;DP=215;FS=3.941;FractionInformativeReads=1;MQ=60;MQRankSum=-0.519;QD=11.05;ReadPosRankSum=-1.116;SOR=0.467;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:111,104:215:99:2404,0,2659:41,70,45,59
chr2	160626152	.	A	G	2518.63	PASS	AC=2;AF=0.895;AN=2;DP=3211;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2181,180,0:0,0,39,19
chr2	160626154	.	C	CAT,CATAT	1814.26	PASS	AC=0,1;AF=0.53,0.106;AN=2;DP=2441;MQ=60;set=variant-variant3-variant4-variant7-variant9-variant10-variant11-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/2:61:99:30,18,10,3
chr2	160626637	.	AT	A	8347.88	PASS	AC=1;AF=0.63;AN=2;DP=6463;MQ=60;set=variant-variant3-variant4-variant7-variant10-variant15-variant20-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:141,97:238:99:2236,0,3579:74,67,45,52
chr2	160626884	.	T	TATCA	3460.83	PASS	AC=1;AF=0.5;AN=2;DP=183;FS=3.448;FractionInformativeReads=0.978;MQ=60;MQRankSum=0.827;QD=18.91;ReadPosRankSum=-1.923;SOR=0.971;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:90,89:179:99:3498,0,4869:48,42,53,36
chr2	160627086	.	CT	C	2009.49	PASS	AC=1;AF=0.5;AN=2;DP=136;FS=2.35;FractionInformativeReads=0.971;MQ=60;MQRankSum=-0.192;QD=14.78;ReadPosRankSum=0.598;SOR=0.487;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:61,71:132:99:2047,0,1619:19,42,26,45
chr2	160627914	.	G	A	3006.96	PASS	AC=1;AF=0.5;AN=2;DP=180;FS=8.856;FractionInformativeReads=1;MQ=60;MQRankSum=1.157;QD=16.71;ReadPosRankSum=-0.917;SOR=1.134;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:77,103:180:99:3035,0,1799:37,40,62,41
chr2	160628223	.	T	G	2790.89	PASS	AC=1;AF=0.5;AN=2;DP=220;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.582;QD=12.69;ReadPosRankSum=2.317;SOR=0.692;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:108,112:220:99:2819,0,2801:53,55,55,57
chr2	160628463	.	G	T	984.51	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.162;QD=11.72;ReadPosRankSum=1.586;SOR=0.685;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,37:84:99:1013,0,1356:19,28,15,22
chr2	160637324	.	A	G	1809.18	PASS	AC=2;AF=0.898;AN=2;DP=2169;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1806,177,0:0,0,37,22
chr2	160654524	.	G	T	2335.17	PASS	AC=1;AF=0.83;AN=2;DP=3176;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:24,34:58:99:960,0,591:16,8,24,10
chr2	160654790	.	G	T	469.96	PASS	AC=1;AF=0.5;AN=2;DP=246;FractionInformativeReads=1;MQ=60;set=variant9-variant34-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,38:71:99:1287,0,917:16,17,17,21
chr2	160654804	.	T	TC,TCC	522.77	PASS	AC=1,0;AF=0.4,0.1;AN=2;DP=229;MQ=60;set=variant9-variant34-variant37-variant40-variant41	GT:DP:GQ:SB	0/1:60:99:14,16,15,15
chr2	160660139	.	A	ATACTC	7514.86	PASS	AC=2;AF=0.898;AN=2;DP=7111;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,146:146:99:7090,481,0:0,0,86,60
chr2	160660165	.	C	T	7849.9	PASS	AC=2;AF=0.898;AN=2;DP=9736;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:6710,616,0:0,0,133,73
chr2	160661107	.	C	A	1732.68	PASS	AC=1;AF=0.5;AN=2;DP=650;FractionInformativeReads=1;MQ=60;set=variant9-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:90,66:156:99:1355,0,2134:50,40,36,30
chr2	160663678	.	T	C	1807.47	PASS	AC=1;AF=0.731;AN=2;DP=2022;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,37:55:99:870,0,361:7,11,15,22
chr2	160676427	.	C	A	1101.22	PASS	AC=1;AF=0.86;AN=2;DP=1838;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:535,0,841:10,18,5,15
chr2	160698700	.	A	C	338.76	PASS	AC=1;AF=0.73;AN=2;DP=1032;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,11:12:53:345,0,53:0,1,10,1
chr2	160698709	.	T	C	159.96	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.033;QD=6.95;ReadPosRankSum=-2.773;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,7:23:99:188,0,589:13,3,6,1
chr2	160698826	.	C	T	614.47	PASS	AC=1;AF=0.5;AN=2;DP=105;FS=2.689;FractionInformativeReads=1;MQ=60;MQRankSum=-1.451;QD=5.85;ReadPosRankSum=0.928;SOR=1.002;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,35:105:99:643,0,1750:35,35,20,15
chr2	160708645	.	C	G	704.25	PASS	AC=1;AF=0.643;AN=2;DP=1989;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,8:31:99:174,0,709:15,8,6,2
chr2	160708923	.	GT	G	825.86	PASS	AC=1;AF=0.75;AN=2;DP=736;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,10:19:99:273,0,236:1,8,3,7
chr2	160708933	.	GTT	G,GT	779.84	PASS	AC=0,2;AF=0.111,0.736;AN=2;DP=614;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-filterInvariant15-variant16-variant18-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/2:18:53:0,0,4,14
chr2	160709730	.	C	G	419.85	PASS	AC=1;AF=0.5;AN=2;DP=34;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.277;QD=12.35;ReadPosRankSum=-0.52;SOR=0.821;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,15:34:99:448,0,462:12,7,10,5
chr2	160710922	.	T	C	1603.97	PASS	AC=1;AF=0.729;AN=2;DP=2150;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,36:63:99:1430,0,1422:17,10,23,13
chr2	160710923	.	G	A	1402.12	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.465;QD=22.26;ReadPosRankSum=-0.132;SOR=0.741;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,36:63:99:1430,0,1422:17,10,23,13
chr2	160711045	.	G	C	830.61	PASS	AC=1;AF=0.655;AN=2;DP=1423;MQ=60;set=variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:26,12:38:99:318,0,736:7,19,2,10
chr2	160711192	.	G	C	123.1	PASS	AC=1;AF=0.5;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.936;QD=8.79;ReadPosRankSum=-1.027;SOR=0.33;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,7:14:99:151,0,221:5,2,4,3
chr2	160711248	.	T	C	356.78	PASS	AC=2;AF=0.943;AN=2;DP=850;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:707,72,0:0,0,14,10
chr2	160711556	.	T	G	372.19	PASS	AC=2;AF=0.943;AN=2;DP=1952;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1565,132,0:0,0,12,32
chr2	160729134	.	A	C	302.03	PASS	AC=2;AF=0.943;AN=2;DP=1503;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1432,132,0:0,0,15,29
chr2	160729200	.	A	G	216.08	PASS	AC=1;AF=0.5;AN=2;DP=10;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.818;QD=21.61;ReadPosRankSum=-0.731;SOR=0.569;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,7:10:98:244,0,98:0,3,1,6
chr2	160737495	.	A	C	385.08	PASS	AC=2;AF=0.943;AN=2;DP=622;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:774,66,0:0,0,16,6
chr2	160737560	.	G	T	859.74	PASS	AC=1;AF=0.932;AN=2;DP=2466;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:26,29:55:99:824,0,597:16,10,20,9
chr2	160742771	.	A	G	377.86	PASS	AC=1;AF=0.636;AN=2;DP=263;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant8-variant9-variant11-variant13-variant15-variant21-variant22-variant23-variant24-variant28-variant30-variant31-variant33-variant35-variant37-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,6:16:99:182,0,366:9,1,5,1
chr2	160761082	.	T	G	4407.97	PASS	AC=2;AF=0.6;AN=2;DP=5750;MQ=60;set=variant3-variant5-variant6-variant7-variant12-variant13-variant15-variant16-variant17-variant19-variant22-variant23-variant27-variant29-variant30-variant31-variant33-variant36-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,209:210:99:6046,619,0:1,0,117,92
chr2	160761136	.	A	G	2917.05	PASS	AC=1;AF=0.5;AN=2;DP=574;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:167,97:264:99:1954,0,4012:81,86,50,47
chr2	160794235	.	G	T	623.62	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=1.77;FractionInformativeReads=1;MQ=60;MQRankSum=0.038;QD=14.85;ReadPosRankSum=0.844;SOR=0.307;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,22:42:99:652,0,669:18,2,18,4
chr2	160795801	.	G	T	89.6	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=4.771;FractionInformativeReads=1;MQ=60;MQRankSum=-0.551;QD=5.97;ReadPosRankSum=-1.408;SOR=0.05;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,5:15:99:118,0,720:0,10,1,4
chr2	160796016	.	CAA	CAAAA,CA,CAAA,C	160.27	PASS	AC=0,1,0,0;AF=0.105,0.289,0.079,0.026;AN=2;DP=512;set=variant3-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant17-variant19-variant21-filterInvariant23-variant29-variant30-filterInvariant33-variant34-variant38-variant39-variant41	GT:DP:GQ:SB	0/2:22:94:12,2,8,0
chr2	160796225	.	A	G	3040.06	PASS	AC=1;AF=0.5;AN=2;DP=246;FS=2.813;FractionInformativeReads=1;MQ=60;MQRankSum=1.154;QD=12.36;ReadPosRankSum=-0.166;SOR=0.871;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:135,111:246:99:3068,0,3609:71,64,63,48
chr2	160796579	.	G	A	934.88	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.044;QD=15.08;ReadPosRankSum=-0.564;SOR=0.641;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:29,33:62:99:963,0,850:11,18,13,20
chr2	160797597	.	A	C	2754.47	PASS	AC=1;AF=0.656;AN=2;DP=3484;FractionInformativeReads=1;MQ=60;set=variant8-variant9-variant10-variant11-variant13-variant15-variant20-variant21-variant24-variant25-variant28-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:91,101:192:99:2664,0,2373:61,30,60,41
chr2	160803892	.	G	A	732.66	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.44;QD=14.65;ReadPosRankSum=-1.919;SOR=0.77;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,31:50:99:761,0,464:12,7,20,11
chr2	160805993	.	C	G	269.94	PASS	AC=2;AF=1;AN=2;DP=608;FS=0;MQ=60;MQRankSum=-0.347;ReadPosRankSum=0.579;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:712,54,0:0,0,16,2
chr2	160807742	.	A	T	390.25	PASS	AC=2;AF=0.977;AN=2;DP=1536;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:69:806,69,0:0,0,17,6
chr2	160833188	.	A	G	2344.95	PASS	AC=2;AF=0.913;AN=2;DP=2638;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2266,228,0:0,0,47,29
chr2	160843746	.	GC	G	972.41	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=0.978;MQ=60;MQRankSum=-1.138;QD=21.14;ReadPosRankSum=-2.057;SOR=0.801;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,26:45:99:1010,0,1150:7,12,9,17
chr2	160843748	.	T	G	981.45	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.249;QD=21.34;ReadPosRankSum=-2.543;SOR=0.7;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,27:46:99:1010,0,1150:7,12,10,17
chr2	160862118	.	G	C	323.87	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.044;QD=17.99;ReadPosRankSum=0.578;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,10:18:99:352,0,266:7,1,9,1
chr2	160872959	.	G	GA	117.7	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=0.963;MQ=60;MQRankSum=0.583;QD=4.36;ReadPosRankSum=-0.639;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,8:26:99:155,0,431:15,3,7,1
chr2	160872985	.	G	C	862.8	PASS	AC=1;AF=0.5;AN=2;DP=71;FractionInformativeReads=1;MQ=60;set=variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,10:35:99:384,0,1478:20,5,8,2
chr2	160872991	.	T	G	649.09	PASS	AC=1;AF=0.607;AN=2;DP=578;MQ=60;set=variant-variant3-variant4-variant6-variant7-variant12-variant15-variant16-variant17-variant19-variant22-variant23-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,12:38:99:420,0,1559:20,6,9,3
chr2	160873006	.	A	AGG	1237.7	PASS	AC=1;AF=0.5;AN=2;DP=116;FractionInformativeReads=1;MQ=60;set=variant15-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,18:50:99:701,0,1705:24,8,14,4
chr2	160873021	.	G	A	2859.44	PASS	AC=1;AF=0.8;AN=2;DP=3107;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:39,25:64:99:885,0,1774:25,14,19,6
chr2	160873270	.	A	G	2352.56	PASS	AC=1;AF=0.8;AN=2;DP=2593;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,25:71:99:648,0,1240:18,28,8,17
chr2	160873294	.	T	TA	1130.13	PASS	AC=1;AF=0.8;AN=2;DP=1979;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,14:49:99:258,0,908:14,21,7,7
chr2	160873397	.	T	C	662.91	PASS	AC=1;AF=0.808;AN=2;DP=812;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,12:31:99:304,0,421:9,10,4,8
chr2	160876827	.	A	G	201.22	PASS	AC=1;AF=0.8;AN=2;DP=416;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,11:14:91:407,0,91:0,3,1,10
chr2	160898779	.	C	T	340.91	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=4.593;FractionInformativeReads=1;MQ=60;MQRankSum=1.042;QD=17.05;ReadPosRankSum=2.353;SOR=1.942;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,12:20:99:369,0,170:3,5,2,10
chr2	160918906	.	C	A	521.98	PASS	AC=1;AF=0.5;AN=2;DP=47;FS=1.121;FractionInformativeReads=1;MQ=60;MQRankSum=-2.309;QD=11.11;ReadPosRankSum=1.075;SOR=0.489;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:24,23:47:99:550,0,570:14,10,12,11
chr2	160918984	.	T	A	347.41	PASS	AC=1;AF=0.5;AN=2;DP=205;MQ=60;set=variant10-variant20-variant32-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,32:58:99:751,0,602:13,13,16,16
chr2	160919040	.	AC	A	1466.66	PASS	AC=1;AF=0.989;AN=2;DP=2175;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:23,38:61:99:1052,0,565:12,11,18,20
chr2	160919208	.	C	A	85.35	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=2.218;FractionInformativeReads=1;MQ=60;MQRankSum=-1.634;QD=5.02;ReadPosRankSum=-2.055;SOR=1.508;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,5:17:99:114,0,284:5,7,1,4
chr2	160957626	.	A	T	557.95	PASS	AC=2;AF=0.579;AN=2;DP=1026;FractionInformativeReads=1;set=variant2-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant20-variant23-variant26-variant27-variant32-variant34-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:1951,171,0:0,0,30,27
chr2	160957824	.	C	G	3363.51	PASS	AC=2;AF=0.579;AN=2;DP=5450;MQ=60;set=variant2-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant20-variant23-variant26-variant27-variant32-variant34-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,295:295:99:9265,882,0:0,0,166,129
chr2	160957846	.	G	A	3635.39	PASS	AC=2;AF=0.579;AN=2;DP=5955;MQ=60;set=variant2-variant8-variant9-variant10-variant12-variant13-variant14-variant16-variant20-variant23-variant26-variant27-variant32-variant34-variant35-variant37-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,329:329:99:10395,986,0:0,0,183,146
chr2	160958349	.	GAA	GA,G	2326.93	PASS	AC=0,2;AF=0.75,0.25;AN=2;DP=3657;set=Intersection	GT:DP:GQ:SB	2/2:79:99:0,0,31,48
chr2	160958485	.	A	G	220.84	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.068;QD=10.04;ReadPosRankSum=-0.735;SOR=0.663;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:249,0,399:3,10,2,7
chr2	160964058	.	G	A	520.78	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.582;QD=24.8;ReadPosRankSum=2.105;SOR=1.508;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,17:21:78:549,0,78:3,1,14,3
chr2	160964100	.	C	A	941.96	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-2.782;QD=19.22;ReadPosRankSum=-1.652;SOR=0.533;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,33:49:99:970,0,395:12,4,23,10
chr2	160993800	.	A	T	1438.15	PASS	AC=1;AF=0.795;AN=2;DP=1897;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,28:54:99:672,0,679:15,11,17,11
chr2	160994764	.	A	G	613.63	PASS	AC=1;AF=0.5;AN=2;DP=155;FractionInformativeReads=1;MQ=60;set=variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:634,0,1077:5,23,5,18
chr2	160994768	.	G	C	717.62	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.474;QD=15.6;ReadPosRankSum=1.23;SOR=0.772;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,26:46:99:746,0,841:4,16,5,21
chr2	160998792	.	A	C	509.47	PASS	AC=1;AF=0.5;AN=2;DP=105;FractionInformativeReads=1;MQ=60;set=variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,17:43:99:445,0,690:8,18,4,13
chr2	161028992	.	T	C	2212.6	PASS	AC=2;AF=0.724;AN=2;DP=2217;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1605,159,0:0,0,31,22
chr2	161051853	.	A	G	1039.69	PASS	AC=1;AF=0.5;AN=2;DP=281;FractionInformativeReads=1;MQ=60;set=variant32-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:49,51:100:99:1290,0,1245:29,20,32,19
chr2	161130280	.	C	CT,CTT	1803.99	PASS	AC=1,0;AF=0.632,0.013;AN=2;DP=2890;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:63:99:28,3,24,8
chr2	161169956	.	G	C	411.8	PASS	AC=1;AF=0.881;AN=2;DP=861;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,5:16:99:136,0,405:1,10,1,4
chr2	161263858	.	G	A	204.54	PASS	AC=1;AF=0.5;AN=2;DP=44;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.72;QD=4.65;ReadPosRankSum=-1.235;SOR=0.536;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:31,13:44:99:233,0,750:18,13,7,6
chr2	161265071	.	C	T	192.99	PASS	AC=2;AF=0.842;AN=2;DP=643;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:362,33,0:0,0,3,8
chr2	161265099	.	C	A	205.45	PASS	AC=2;AF=0.863;AN=2;DP=611;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:312,27,0:0,0,3,6
chr2	161349969	.	A	G	992.55	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=0.831;FractionInformativeReads=0.943;MQ=60;MQRankSum=0.394;QD=11.41;ReadPosRankSum=1.925;SOR=0.811;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,40:82:99:1021,0,1043:18,24,16,24
chr2	161350053	.	TTCCTCC	TTCCTCCTCC,TTCC,T,TTCCTCCTCCTCC	333.03	PASS	AC=0,0,0,1;AF=0.333,0.125,0.042,0.042;AN=2;DP=538;set=variant8-variant13-variant19-variant21-variant28-variant29-variant33-variant35-variant37-variant40-variant41-variant43	GT:DP:GQ:SB	0/4:17:99:2,6,1,8
chr2	161797329	.	C	T	456.28	PASS	AC=1;AF=0.724;AN=2;DP=1426;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,20:39:99:591,0,500:12,7,16,4
chr2	161797513	.	A	G	1267.88	PASS	AC=1;AF=0.724;AN=2;DP=4706;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,62:104:99:1513,0,996:24,18,28,34
chr2	161993530	.	A	G	354.33	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=1.569;FractionInformativeReads=1;MQ=60;MQRankSum=-0.638;QD=14.17;ReadPosRankSum=0.361;SOR=1.112;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,15:25:99:383,0,250:5,5,6,9
chr2	162061565	.	C	G	1717.64	PASS	AC=2;AF=0.907;AN=2;DP=2139;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1398,126,0:0,0,12,30
chr2	162087835	.	G	A	1099.31	PASS	AC=1;AF=0.5;AN=2;DP=95;FS=0.766;FractionInformativeReads=1;MQ=60;MQRankSum=-1.843;QD=11.57;ReadPosRankSum=0.16;SOR=0.745;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,46:95:99:1128,0,1304:24,25,24,22
chr2	162088034	.	C	T	1012.97	PASS	AC=1;AF=0.5;AN=2;DP=99;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.074;QD=10.23;ReadPosRankSum=0.004;SOR=0.745;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,44:99:99:1041,0,1260:22,33,17,27
chr2	162091765	.	G	A	612.47	PASS	AC=1;AF=0.5;AN=2;DP=28;FS=2.649;FractionInformativeReads=1;MQ=60;MQRankSum=0.376;QD=21.87;ReadPosRankSum=0.47;SOR=2.015;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,17:28:99:641,0,314:9,2,16,1
chr2	162091921	.	G	A	1369.19	PASS	AC=1;AF=0.5;AN=2;DP=130;FS=1.4;FractionInformativeReads=1;MQ=60;MQRankSum=-1.482;QD=10.53;ReadPosRankSum=2.274;SOR=0.667;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:72,58:130:99:1397,0,1817:34,38,30,28
chr2	162092242	.	C	CA	218.96	PASS	AC=1;AF=0.5;AN=2;DP=23;FS=0;FractionInformativeReads=0.913;MQ=60;MQRankSum=0.106;QD=9.52;ReadPosRankSum=0.106;SOR=0.527;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,11:21:99:256,0,237:6,4,6,5
chr2	162092722	.	TAA	TAAA,TA,T,TAAAAA	60.85	PASS	AC=2,0,0,0;AF=0.147,0.324,0.029,0.029;AN=2;DP=340;set=variant7-variant8-variant14-filterInvariant15-variant16-variant18-variant19-variant21-variant26-filterInvariant28-variant29-variant34-variant36-variant38-variant39-variant40-variant41	GT:DP:GQ:SB	1/1:9:16:1,0,4,4
chr2	162165008	.	A	T	1403.85	PASS	AC=1;AF=0.817;AN=2;DP=2581;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:27,34:61:99:827,0,656:10,17,15,19
chr2	162175290	.	T	C	2053.66	PASS	AC=2;AF=1;AN=2;DP=2992;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1873,168,0:0,0,38,18
chr2	162224193	.	G	GT	1836.22	PASS	AC=2;AF=0.932;AN=2;DP=2478;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1374,132,0:0,0,19,24
chr2	162224495	.	A	C	150.14	PASS	AC=1;AF=0.5;AN=2;DP=212;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant10-variant14-variant17-variant18-variant24-variant29-variant30-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,10:15:99:283,0,138:1,4,3,7
chr2	162226336	.	G	T	1141.38	PASS	AC=2;AF=0.93;AN=2;DP=1518;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:92:1120,92,0:0,0,23,8
chr2	162241846	.	T	C	587.91	PASS	AC=1;AF=0.538;AN=2;DP=314;FractionInformativeReads=1;MQ=60;set=variant3-variant6-variant9-variant10-variant14-variant17-variant18-variant24-variant29-variant30-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,27:36:99:709,0,174:6,3,18,9
chr2	162247772	.	C	T	1794.57	PASS	AC=2;AF=0.93;AN=2;DP=2034;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,38:38:99:1216,114,0:0,0,15,23
chr2	162265270	.	A	G	1405.9	PASS	AC=1;AF=0.5;AN=2;DP=1057;FractionInformativeReads=1;set=variant3-variant6-variant9-variant10-variant14-variant17-variant18-variant24-variant29-variant30-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,35:69:99:1032,0,966:25,9,26,9
chr2	162274607	.	ATGTGTG	ATGTGTGTGTGTGTG,A,ATGTGTGTGTG,ATGTG,ATGTGTGTG,ATGTGTGTGTGTG,ATGTGTGTGTGTGTGTG	190.54	PASS	AC=0,1,0,0,0,0,0;AF=0.015,0.212,0.091,0.061,0.091,0.091,0.015;AN=2;DP=653;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:15:48:2,0,8,5
chr2	162279809	.	G	GC,GCCC	290.63	PASS	AC=1,0;AF=0.444,0.056;AN=2;DP=738;MQ=60;set=variant-filterInvariant4-variant8-variant9-filterInvariant11-variant27-variant36-variant41-variant44	GT:DP:GQ:SB	0/1:74:99:6,31,37,0
chr2	162279815	.	A	C	379.88	PASS	AC=1;AF=0.5;AN=2;DP=3039;MQ=60;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant12-variant13-filterInvariant15-filterInvariant16-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:41,37:78:99:913,0,1885:6,35,37,0
chr2	162279821	.	A	C	440.4	PASS	AC=1;AF=0.5;AN=2;DP=3387;MQ=60;set=filterInvariant-filterInvariant2-filterInvariant3-filterInvariant4-filterInvariant5-variant6-filterInvariant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant12-filterInvariant13-filterInvariant15-filterInvariant16-filterInvariant17-filterInvariant18-filterInvariant19-filterInvariant20-filterInvariant21-filterInvariant22-filterInvariant23-filterInvariant24-filterInvariant25-filterInvariant26-filterInvariant27-filterInvariant28-filterInvariant29-filterInvariant30-filterInvariant31-filterInvariant34-filterInvariant35-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant40-filterInvariant41-filterInvariant42-filterInvariant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:50,36:86:99:870,0,2429:14,36,36,0
chr2	162279826	.	A	C	449.55	PASS	AC=1;AF=0.5;AN=2;DP=1104;MQ=60;set=filterInvariant2-filterInvariant5-filterInvariant10-filterInvariant12-filterInvariant13-variant16-filterInvariant20-filterInvariant26-filterInvariant32-filterInvariant34-filterInvariant37-filterInvariant40-variant41-filterInvariant42-filterInvariant43	GT:AD:DP:GQ:PL:SB	0/1:54,8:62:99:866,0,2490:16,38,8,0
chr2	162280748	.	G	A	3200.25	PASS	AC=1;AF=0.884;AN=2;DP=5693;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:81,45:126:99:910,0,2112:39,42,20,25
chr2	162357875	.	A	G	1234.55	PASS	AC=1;AF=0.5;AN=2;DP=125;FS=0;FractionInformativeReads=1;MQ=57.93;MQRankSum=-1.275;QD=9.88;ReadPosRankSum=-1.485;SOR=0.675;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:73,52:125:99:1263,0,1890:41,32,29,23
chr2	162363697	.	T	A	2133.47	PASS	AC=1;AF=0.5;AN=2;DP=199;FS=0;FractionInformativeReads=1;MQ=56.3;MQRankSum=2.59;QD=10.72;ReadPosRankSum=-0.162;SOR=0.692;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:119,80:199:99:2162,0,2817:61,58,41,39
chr2	162757676	.	A	G	205.68	PASS	AC=1;AF=0.708;AN=2;DP=298;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:146,0,114:1,3,1,4
chr2	162813669	.	C	T	1467.26	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=2.687;FractionInformativeReads=1;MQ=60;MQRankSum=-0.44;QD=14.38;ReadPosRankSum=0.891;SOR=0.457;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:46,56:102:99:1495,0,1261:15,31,22,34
chr2	162862338	.	TA	T	841.67	PASS	AC=1;AF=0.5;AN=2;DP=56;FS=4.281;FractionInformativeReads=0.911;MQ=60;MQRankSum=-0.21;QD=15.03;ReadPosRankSum=1.189;SOR=0.287;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,34:51:99:879,0,364:5,12,15,19
chr2	162873188	.	T	C	166.69	PASS	AC=2;AF=0.776;AN=2;DP=396;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:474,39,0:0,0,11,2
chr2	162876828	.	C	T	259.8	PASS	AC=1;AF=0.5;AN=2;DP=164;MQ=60;set=variant17-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,19:52:99:253,0,1015:17,16,6,13
chr2	162876829	.	A	C	130.33	PASS	AC=1;AF=0.5;AN=2;DP=223;set=variant17-filterInvariant27-filterInvariant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,14:55:99:158,0,1243:18,23,6,8
chr2	162876985	.	G	A	895.09	PASS	AC=1;AF=0.5;AN=2;DP=378;MQ=60;set=variant17-variant22-variant29-variant41	GT:AD:DP:GQ:PL:SB	0/1:58,37:95:99:861,0,1500:30,28,21,16
chr2	162877260	.	T	A	1172.61	PASS	AC=1;AF=0.5;AN=2;DP=81;FS=0.866;FractionInformativeReads=1;MQ=60;MQRankSum=1.038;QD=14.48;ReadPosRankSum=-0.716;SOR=0.879;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:37,44:81:99:1201,0,849:15,22,16,28
chr2	162890175	.	T	C	1058.22	PASS	AC=2;AF=0.78;AN=2;DP=982;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:884,84,0:0,0,9,19
chr2	162890217	.	G	A	208.66	PASS	AC=1;AF=0.593;AN=2;DP=356;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant16-variant19-variant20-variant21-variant22-variant23-variant24-variant28-variant29-variant31-variant32-variant33-variant34-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,8:15:99:222,0,220:1,6,2,6
chr2	162891848	.	C	T	2280.06	PASS	AC=2;AF=0.78;AN=2;DP=3047;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,81:81:99:2597,243,0:0,0,27,54
chr2	162930725	.	T	G	1277.98	PASS	AC=2;AF=0.714;AN=2;DP=1346;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant20-variant21-variant23-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:856,87,0:0,0,13,16
chr2	162999355	.	C	A	1548.77	PASS	AC=1;AF=0.5;AN=2;DP=254;FractionInformativeReads=1;MQ=60;set=variant21-variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,16:48:99:448,0,1066:25,7,12,4
chr2	162999388	.	T	C	2370.9	PASS	AC=1;AF=0.5;AN=2;DP=432;FractionInformativeReads=1;MQ=60;set=variant21-variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,28:76:99:728,0,1302:30,18,20,8
chr2	163008969	.	CT	C	93.9	PASS	AC=1;AF=0.5;AN=2;DP=2856;set=filterInvariant-filterInvariant3-filterInvariant4-filterInvariant5-filterInvariant6-variant7-filterInvariant8-filterInvariant9-filterInvariant10-filterInvariant11-filterInvariant13-filterInvariant14-filterInvariant15-filterInvariant18-filterInvariant19-filterInvariant20-variant21-filterInvariant22-filterInvariant24-variant26-variant28-variant29-filterInvariant30-filterInvariant31-filterInvariant32-filterInvariant33-filterInvariant34-filterInvariant36-filterInvariant37-filterInvariant38-filterInvariant39-filterInvariant40-filterInvariant41-filterInvariant42	GT:AD:DP:GQ:PL:SB	0/1:23,10:33:99:107,0,379:3,20,1,9
chr2	163051415	.	C	T	1159.75	PASS	AC=2;AF=1;AN=2;DP=1229;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.542;ReadPosRankSum=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:65:693,65,0:0,0,7,15
chr2	163054724	.	C	T	751.84	PASS	AC=1;AF=0.5;AN=2;DP=331;MQ=60;set=variant13-variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,39:83:99:1079,0,1135:25,19,24,15
chr2	163054796	.	G	A	1465.47	PASS	AC=1;AF=0.5;AN=2;DP=110;FS=0.707;FractionInformativeReads=1;MQ=60;MQRankSum=-1.89;QD=13.32;ReadPosRankSum=0.558;SOR=0.616;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,62:110:99:1494,0,1134:23,25,31,31
chr2	163055194	.	G	A	1770.02	PASS	AC=1;AF=0.5;AN=2;DP=146;FS=2.133;FractionInformativeReads=0.993;MQ=60;MQRankSum=-0.825;QD=12.12;ReadPosRankSum=-0.694;SOR=0.533;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,75:145:99:1798,0,1768:45,25,45,30
chr2	163056903	.	C	T	54.21	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;QD=13.55;ReadPosRankSum=-0.727;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:82,0,34:1,0,2,1
chr2	163056924	.	T	TTATACTGATGTAG	157.63	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=0;FractionInformativeReads=1;MQ=60;set=variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:79:123,0,79:1,0,2,1
chr2	163056952	.	A	C	240.17	PASS	AC=1;AF=0.5;AN=2;DP=44;FractionInformativeReads=1;MQ=60;set=variant13-variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:82,0,34:1,0,2,1
chr2	163066319	.	A	ATCAC	298.37	PASS	AC=1;AF=0.5;AN=2;DP=24;FS=2.006;FractionInformativeReads=0.958;MQ=60;MQRankSum=-0.409;QD=12.43;ReadPosRankSum=0.346;SOR=0.321;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,9:23:99:336,0,806:12,2,7,2
chr2	163078034	.	C	CA	310.7	PASS	AC=1;AF=0.654;AN=2;DP=395;MQ=60;set=variant-variant2-variant6-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant35-variant36-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,11:20:99:235,0,190:8,1,9,2
chr2	163080793	.	A	G	1147.83	PASS	AC=1;AF=0.5;AN=2;DP=313;FractionInformativeReads=1;MQ=60;set=variant13-variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,39:76:99:1095,0,1057:25,12,27,12
chr2	163123704	.	C	T	807.89	PASS	AC=1;AF=0.5;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:27,22:49:99:596,0,731:16,11,14,8
chr2	163128725	.	A	G	341.43	PASS	AC=1;AF=0.5;AN=2;DP=98;FractionInformativeReads=1;MQ=60;set=variant13-variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,15:23:99:383,0,235:7,1,9,6
chr2	163128824	.	T	C	774.14	PASS	AC=1;AF=0.786;AN=2;DP=3028;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:33,45:78:99:1154,0,724:17,16,23,22
chr2	163128883	.	G	A	792.75	PASS	AC=1;AF=0.5;AN=2;DP=134;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,43:68:99:1015,0,575:9,16,21,22
chr2	163128977	.	C	CA	553.83	PASS	AC=1;AF=0.5;AN=2;DP=70;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,14:30:99:475,0,557:6,10,3,11
chr2	163133091	.	A	G	40.7	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.736;QD=6.78;ReadPosRankSum=-0.736;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:5,1:6:69:69,0,352:4,1,1,0
chr2	163133106	.	C	G	240.88	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.002;QD=16.06;ReadPosRankSum=-2.298;SOR=0.582;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:269,0,370:5,1,7,2
chr2	163137753	.	A	C	413.09	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.479;QD=21.74;ReadPosRankSum=0.887;SOR=1.292;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:441,0,252:7,0,12,0
chr2	163137871	.	C	G	1193.26	PASS	AC=1;AF=0.5;AN=2;DP=344;FractionInformativeReads=1;MQ=60;set=variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,65:116:99:1435,0,1162:30,21,35,30
chr2	163137983	.	T	C	1362.04	PASS	AC=1;AF=0.5;AN=2;DP=307;FractionInformativeReads=1;MQ=60;set=variant13-variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,27:65:99:657,0,1006:15,23,8,19
chr2	163138785	.	G	A	45.21	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=0;FractionInformativeReads=1;MQ=60;set=variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:154,0,148:4,0,4,1
chr2	163138844	.	A	AT	148.67	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.372;QD=7.82;ReadPosRankSum=0.372;SOR=0.368;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:186,0,277:8,3,5,3
chr2	163149965	.	T	C	929.98	PASS	AC=1;AF=0.5;AN=2;DP=137;FractionInformativeReads=1;MQ=60;set=variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:533,0,701:18,3,15,3
chr2	163166654	.	T	A	308.62	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.333;QD=12.34;ReadPosRankSum=-1.387;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:337,0,352:9,4,9,3
chr2	163174997	.	C	T	1510.02	PASS	AC=1;AF=0.5;AN=2;DP=105;FS=7.899;FractionInformativeReads=1;MQ=60;MQRankSum=-1.266;QD=14.38;ReadPosRankSum=-1.104;SOR=0.265;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:45,60:105:99:1538,0,1148:15,30,29,31
chr2	163175656	.	A	C	720.57	PASS	AC=1;AF=0.5;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant28-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:28,48:76:99:1183,0,602:15,13,22,26
chr2	163228587	.	G	A	221.17	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=1.721;FractionInformativeReads=1;MQ=60;MQRankSum=-1.333;QD=8.85;ReadPosRankSum=-0.462;SOR=0.357;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:13,12:25:99:249,0,420:3,10,4,8
chr2	163694878	.	C	G	1041.21	PASS	AC=1;AF=0.75;AN=2;DP=2620;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,31:66:99:1196,0,1905:19,16,19,12
chr2	163694886	.	G	A	1047.94	PASS	AC=1;AF=0.721;AN=2;DP=2512;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,35:71:99:1317,0,1936:19,17,21,14
chr2	164449900	.	G	T	549.33	PASS	AC=2;AF=0.762;AN=2;DP=1125;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:772,60,0:0,0,17,3
chr2	164459422	.	G	T	4206.56	PASS	AC=1;AF=0.583;AN=2;DP=3860;MQ=60;set=variant7-variant8-variant11-variant14-variant19-variant26-variant28-variant29-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:161,117:278:99:2681,0,3917:84,77,54,63
chr2	164460947	.	A	G	8251.24	PASS	AC=1;AF=0.583;AN=2;DP=7363;MQ=60;set=variant7-variant8-variant11-variant14-variant19-variant26-variant28-variant29-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:277,271:548:99:6705,0,6715:140,137,142,129
chr2	164461312	.	CAG	CAGAG,CAGAGAG,C,CAGAGAGAG	411.94	PASS	AC=0,0,1,0;AF=0.222,0.111,0.194,0.028;AN=2;DP=433;set=variant7-variant10-variant11-variant12-variant14-filterInvariant16-variant18-variant19-variant22-filterInvariant24-variant28-variant30-variant31-variant32-variant35-variant38-variant39-variant41	GT:DP:GQ:SB	0/3:13:99:4,4,2,3
chr2	164462407	.	AT	A,ATT	110.11	PASS	AC=1,0;AF=0.526,0.026;AN=2;DP=3076;set=filterInvariant3-variant7-variant8-variant11-variant14-filterInvariant15-variant19-filterInvariant20-variant21-variant26-variant28-variant29-variant30-variant38-variant39-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/1:167:99:50,32,55,30
chr2	164463486	.	T	A	2305.72	PASS	AC=1;AF=0.583;AN=2;DP=2348;MQ=60;set=variant7-variant8-variant11-variant14-variant19-variant26-variant28-variant29-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:90,94:184:99:2533,0,2720:61,29,59,35
chr2	164464056	.	A	G	1888.96	PASS	AC=1;AF=0.75;AN=2;DP=5512;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:73,68:141:99:1640,0,1762:35,38,33,35
chr2	164464777	.	G	A	1694.87	PASS	AC=1;AF=0.625;AN=2;DP=3715;MQ=60;set=variant-variant3-variant7-variant8-variant11-variant14-variant19-variant21-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:68,71:139:99:1819,0,1957:29,39,34,37
chr2	164466039	.	AT	A	546.51	PASS	AC=1;AF=0.735;AN=2;DP=2319;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant13-variant15-variant16-variant17-variant20-variant22-variant23-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:576,0,461:11,11,12,13
chr2	164467488	.	A	G	64.17	DRAGENHardSNP	AC=1;AF=0.5;AN=2;DP=340;MQ=60;set=FilteredInAll	GT:AD:DP:GQ:PL:SB	0/1:54,16:70:72:72,0,1202:44,10,0,16
chr2	164468360	.	A	G	367.49	PASS	AC=1;AF=0.536;AN=2;DP=485;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant11-variant14-variant22-variant26-variant31-variant34-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,13:24:99:442,0,288:3,8,2,11
chr2	165351161	.	G	A	305.93	PASS	AC=1;AF=0.5;AN=2;DP=17;FS=3.274;FractionInformativeReads=1;MQ=60;MQRankSum=-0.241;QD=18;ReadPosRankSum=1.107;SOR=1.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,9:17:99:334,0,264:1,7,0,9
chr2	165353712	.	C	T	1418.28	PASS	AC=2;AF=0.8;AN=2;DP=5715;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,134:134:99:4140,400,0:0,0,58,76
chr2	165358655	.	T	A	323.58	PASS	AC=1;AF=0.545;AN=2;DP=156;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant19-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,5:12:99:148,0,198:5,2,4,1
chr2	165358672	.	A	G	718.96	PASS	AC=2;AF=0.833;AN=2;DP=877;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:542,45,0:0,0,12,3
chr2	165364887	.	G	A	544.46	PASS	AC=1;AF=0.545;AN=2;DP=429;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,23:38:99:612,0,373:10,5,15,8
chr2	165378427	.	C	A	264.64	PASS	AC=1;AF=0.545;AN=2;DP=239;FractionInformativeReads=1;MQ=60;set=variant2-variant8-variant9-variant11-variant14-variant16-variant17-variant18-variant19-variant31-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:265,0,301:8,1,7,1
chr2	165424837	.	A	G	2894.2	PASS	AC=1;AF=0.686;AN=2;DP=3081;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,42:79:99:998,0,848:23,14,24,18
chr2	165476126	.	G	A	538.67	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.28;QD=19.95;ReadPosRankSum=0.226;SOR=0.446;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:567,0,327:9,1,14,3
chr2	165476548	.	GTCTCTC	GTC,G,GTCTCTCTCTC,GTCTCTCTC	734.02	PASS	AC=1,0,0,0;AF=0.821,0.013,0.013,0.013;AN=2;DP=1330;set=variant-variant2-variant3-variant5-variant6-filterInvariant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	0/1:13:99:1,8,1,3
chr2	165477836	.	G	A	1288.71	PASS	AC=1;AF=0.611;AN=2;DP=889;MQ=60;set=variant5-variant11-variant14-variant16-variant18-variant30-variant33-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,42:82:99:912,0,997:17,23,25,17
chr2	165478203	.	T	C	1478.69	PASS	AC=2;AF=0.869;AN=2;DP=1211;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,27:27:81:981,81,0:0,0,22,5
chr2	165539515	.	TACACAC	TACACACAC,TACACACACACAC,TACACACACAC,TACAC,T,TAC,TACACACACACACACAC	330.05	PASS	AC=1,0,0,0,0,0,0;AF=0.378,0.068,0.149,0.014,0.014,0.068,0.014;AN=2;DP=1243;set=variant-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:25:99:11,7,6,1
chr2	165539661	.	T	C	618.27	PASS	AC=1;AF=0.632;AN=2;DP=2193;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,35:53:99:904,0,422:5,13,17,18
chr2	165540937	.	T	A	854.1	PASS	AC=1;AF=0.556;AN=2;DP=679;MQ=60;set=variant5-variant11-variant18-variant23-variant30-variant34-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:37,35:72:99:721,0,1100:25,12,22,13
chr2	165544450	.	G	A	158.21	PASS	AC=1;AF=0.629;AN=2;DP=281;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant10-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:120,0,34:0,1,0,3
chr2	165557318	.	C	T	555.83	PASS	AC=1;AF=0.621;AN=2;DP=984;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant9-variant10-variant11-variant12-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,7:20:99:223,0,405:4,9,0,7
chr2	165559856	.	A	G	312.08	PASS	AC=1;AF=0.571;AN=2;DP=128;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant23-variant30-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:295,0,215:4,6,2,8
chr2	165578581	.	A	G	873.48	PASS	AC=2;AF=0.737;AN=2;DP=4863;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,107:107:99:3413,321,0:0,0,68,39
chr2	165579065	.	T	G	382.01	PASS	AC=1;AF=0.542;AN=2;DP=214;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant17-variant18-variant20-variant23-variant28-variant30-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:149,0,150:2,3,3,3
chr2	165584407	.	C	T	258.17	PASS	AC=2;AF=0.737;AN=2;DP=472;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant6-variant8-variant9-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:267,18,0:0,0,6,0
chr2	165586466	.	T	C	1260.38	PASS	AC=1;AF=0.542;AN=2;DP=645;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant17-variant18-variant20-variant23-variant28-variant30-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,23:61:99:643,0,1089:23,15,18,5
chr2	165586652	.	C	T	1110.82	PASS	AC=1;AF=0.542;AN=2;DP=740;MQ=60;set=variant5-variant11-variant17-variant18-variant20-variant23-variant28-variant30-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,27:67:99:675,0,1151:10,30,10,17
chr2	165586693	.	T	C	424.88	PASS	AC=1;AF=0.563;AN=2;DP=270;MQ=60;set=variant5-variant11-filterInvariant18-variant23-variant30-variant35-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:25,18:43:99:428,0,731:6,19,6,12
chr2	165586705	.	T	G	299.49	PASS	AC=1;AF=0.545;AN=2;DP=283;FractionInformativeReads=1;MQ=60;set=variant5-variant11-variant17-variant20-variant23-variant28-variant30-variant35-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,14:34:99:351,0,570:5,15,4,10
chr2	165630100	.	A	G	79.46	PASS	AC=1;AF=0.579;AN=2;DP=201;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant9-variant11-variant13-variant17-variant18-variant19-variant23-variant24-variant30-variant33-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:143,0,140:4,0,4,0
chr2	165630414	.	A	T	269.69	PASS	AC=1;AF=0.579;AN=2;DP=552;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant9-variant11-variant13-variant17-variant18-variant19-variant23-variant24-variant30-variant33-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,14:19:99:445,0,121:1,4,2,12
chr2	165630460	.	T	C	118.06	PASS	AC=2;AF=0.756;AN=2;DP=433;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:208,15,0:0,0,0,5
chr2	165636332	.	T	C	1056.88	PASS	AC=2;AF=0.703;AN=2;DP=2776;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2107,198,0:0,0,27,39
chr2	165657118	.	A	T	1284.26	PASS	AC=1;AF=0.529;AN=2;DP=890;MQ=60;set=variant3-variant5-variant9-variant10-variant15-variant17-variant19-variant20-variant25-variant26-variant28-variant29-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,26:37:99:981,0,343:5,6,10,16
chr2	165657142	.	A	C	1065.19	PASS	AC=1;AF=0.643;AN=2;DP=1197;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant8-variant9-variant10-variant12-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant37-variant38-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,21:30:99:883,0,312:3,6,7,14
chr2	165657185	.	G	A	174.2	PASS	AC=1;AF=0.595;AN=2;DP=457;MQ=60;set=variant2-variant4-variant5-variant9-variant11-variant13-variant14-variant17-variant18-variant19-variant23-variant24-variant30-variant33-variant35-variant36-variant37-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:5,4:9:74:74,0,159:2,3,2,2
chr2	165698547	.	G	A	1906.34	PASS	AC=1;AF=0.5;AN=2;DP=2489;MQ=60;set=variant3-variant5-variant9-variant10-variant15-variant17-variant19-variant20-variant25-variant26-variant28-variant29-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:46,78:124:99:2239,0,1170:25,21,45,33
chr2	165698715	.	A	AG	3912.79	PASS	AC=2;AF=1;AN=2;DP=5455;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,86:86:99:3054,261,0:0,0,39,47
chr2	165698873	.	G	T	138.61	PASS	AC=1;AF=0.538;AN=2;DP=158;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant10-variant17-variant19-variant25-variant26-variant29-variant34-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,11:13:43:399,0,43:0,2,1,10
chr2	165753414	.	C	T	6901.74	PASS	AC=1;AF=0.989;AN=2;DP=8765;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:89,95:184:99:2633,0,2465:50,39,52,43
chr2	165753763	.	G	C	1655.43	PASS	AC=1;AF=0.821;AN=2;DP=2506;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:594,0,933:12,16,8,12
chr2	165754574	.	A	C	305.65	PASS	AC=1;AF=0.5;AN=2;DP=615;set=variant2-variant4-filterInvariant6-variant8-variant9-variant10-variant11-filterInvariant12-filterInvariant13-variant14-variant16-filterInvariant19-variant25-variant28-variant29-variant31-variant38-filterInvariant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,6:24:99:120,0,536:1,17,6,0
chr2	165809580	.	A	T	634.73	PASS	AC=1;AF=0.733;AN=2;DP=1187;MQ=60;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant13-variant14-variant17-variant18-variant19-variant21-variant23-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,18:39:99:531,0,508:14,7,15,3
chr2	165809867	.	A	G	463.54	PASS	AC=1;AF=0.588;AN=2;DP=184;FractionInformativeReads=1;MQ=60;set=variant2-variant7-variant9-variant10-variant13-variant14-variant17-variant19-variant24-variant25-variant27-variant33-variant37-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:2,7:9:56:281,0,56:0,2,0,7
chr2	165811554	.	GAA	G,GA,GAAA	615.73	PASS	AC=1,0,0;AF=0.58,0.25,0.011;AN=2;DP=1510;MQ=60;set=Intersection	GT:DP:GQ:SB	0/1:25:99:12,4,8,1
chr2	165948757	.	T	C	472.99	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=2.772;FractionInformativeReads=1;MQ=60;MQRankSum=-1.663;QD=9.85;ReadPosRankSum=-1.663;SOR=0.34;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,20:48:99:501,0,790:21,7,13,7
chr2	165995907	.	A	G	119.38	PASS	AC=1;AF=0.5;AN=2;DP=9;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.219;QD=13.26;ReadPosRankSum=1.307;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:148,0,156:4,0,4,1
chr2	165996107	.	T	A	1847.23	PASS	AC=2;AF=0.594;AN=2;DP=4488;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,125:125:99:3727,373,0:0,0,61,64
chr2	165996281	.	A	T	62.07	PASS	AC=2;AF=0.607;AN=2;DP=489;MQ=60;set=variant-variant2-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant14-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant28-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:510,39,0:0,0,1,12
chr2	166012203	.	C	T	917.04	PASS	AC=2;AF=0.736;AN=2;DP=2505;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2127,192,0:0,0,42,22
chr2	166012631	.	G	A	457.47	PASS	AC=1;AF=0.7;AN=2;DP=1120;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,21:31:99:588,0,269:3,7,6,15
chr2	166012681	.	A	C	202.67	PASS	AC=1;AF=0.7;AN=2;DP=531;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,8:13:99:264,0,144:2,3,1,7
chr2	166018627	.	A	G	914.49	PASS	AC=2;AF=0.583;AN=2;DP=702;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:2372,160,0:0,0,31,20
chr2	166018636	.	T	A	953.89	PASS	AC=2;AF=0.583;AN=2;DP=752;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,57:57:99:2621,178,0:0,0,32,25
chr2	166018637	.	T	G	953.89	PASS	AC=2;AF=0.583;AN=2;DP=762;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,58:58:99:2621,178,0:0,0,32,26
chr2	166018703	.	T	C	754.21	PASS	AC=2;AF=0.583;AN=2;DP=816;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1572,164,0:0,0,27,28
chr2	166018764	.	C	CT	315.34	PASS	AC=2;AF=0.583;AN=2;DP=558;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:1,25:26:49:652,49,0:0,1,9,16
chr2	166018901	.	C	A	82.75	PASS	AC=2;AF=0.577;AN=2;DP=284;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant32-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:68:561,68,0:0,0,12,11
chr2	166018990	.	C	A	73.69	PASS	AC=2;AF=0.583;AN=2;DP=207;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:825,66,0:0,0,13,9
chr2	166019384	.	T	C	2062.38	PASS	AC=2;AF=0.583;AN=2;DP=1908;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,132:132:99:4324,396,0:0,0,70,62
chr2	166020295	.	C	T	1931.22	PASS	AC=2;AF=0.583;AN=2;DP=1559;FractionInformativeReads=1;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3501,312,0:0,0,44,60
chr2	166020893	.	G	A	746.3	PASS	AC=2;AF=0.583;AN=2;DP=861;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2192,215,0:0,0,44,28
chr2	166025174	.	G	A	398.76	PASS	AC=2;AF=0.583;AN=2;DP=331;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:912,72,0:0,0,20,4
chr2	166025417	.	G	A	453.12	PASS	AC=2;AF=0.583;AN=2;DP=430;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1194,96,0:0,0,6,26
chr2	166026859	.	G	A	118.02	PASS	AC=2;AF=0.611;AN=2;DP=77;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant24-variant26-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:163,12,0:0,0,4,0
chr2	166027176	.	A	G	82.65	PASS	AC=2;AF=0.583;AN=2;DP=106;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant33-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:318,33,0:0,0,4,7
chr2	166027187	.	T	A	87.17	PASS	AC=2;AF=0.591;AN=2;DP=85;FractionInformativeReads=1;MQ=60;set=variant8-variant12-variant13-variant24-variant26-variant29-variant31-variant34-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:309,33,0:0,0,4,7
chr2	166032734	.	A	G	1074.36	PASS	AC=1;AF=0.5;AN=2;DP=88;FS=4.208;FractionInformativeReads=1;MQ=60;MQRankSum=0.256;QD=12.21;ReadPosRankSum=-0.851;SOR=1.244;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:48,40:88:99:1103,0,1217:27,21,27,13
chr2	166032775	.	CATT	C	1807.47	PASS	AC=1;AF=0.5;AN=2;DP=744;MQ=60;set=variant12-variant26-variant29-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,74:127:99:2888,0,1963:30,23,41,33
chr2	166150550	.	A	ATT,AT	358.39	PASS	AC=0,1;AF=0.583,0.042;AN=2;DP=391;set=variant3-variant8-variant14-variant17-variant22-variant23-variant28-variant32-variant34-variant35-variant40-variant41	GT:DP:GQ:SB	0/2:29:99:9,6,11,3
chr2	166152111	.	T	C	238.72	PASS	AC=2;AF=0.988;AN=2;DP=216;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.831;ReadPosRankSum=-0.38;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:177,12,0:0,0,4,0
chr2	166152185	.	A	G	157.6	PASS	AC=2;AF=0.761;AN=2;DP=1215;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:626,48,0:0,0,14,2
chr2	166153195	.	C	CA	78.71	PASS	AC=1;AF=0.722;AN=2;DP=55;FS=0;MQ=60;set=variant6-variant8-variant17-variant28-variant32-variant34-variant35-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:38:72,0,38:2,0,4,0
chr2	166153247	.	G	A	320.85	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.022;QD=14.58;ReadPosRankSum=0.429;SOR=0.593;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:349,0,263:7,3,8,4
chr2	166153377	.	A	G	341.77	PASS	AC=1;AF=0.5;AN=2;DP=48;FS=2.715;FractionInformativeReads=1;MQ=60;MQRankSum=-1.192;QD=7.12;ReadPosRankSum=0.055;SOR=1.251;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:32,16:48:99:370,0,853:14,18,5,11
chr2	166153499	.	A	G	405.07	PASS	AC=2;AF=0.761;AN=2;DP=1180;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:86:882,86,0:0,0,18,11
chr2	166167166	.	T	A	162.18	PASS	AC=2;AF=0.679;AN=2;DP=108;MQ=60;set=variant3-variant6-variant8-variant22-variant23-variant28-variant30-variant31-variant32-variant34-variant35-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:184,15,0:0,0,2,3
chr2	166170127	.	T	C	1103.06	PASS	AC=2;AF=0.761;AN=2;DP=3795;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2583,248,0:0,0,53,30
chr2	166172317	.	A	G	207.84	PASS	AC=2;AF=0.761;AN=2;DP=1369;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1164,111,0:0,0,14,23
chr2	166179650	.	C	T	1057.71	PASS	AC=1;AF=0.643;AN=2;DP=4516;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant33-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,62:111:99:1524,0,1336:31,18,34,28
chr2	166221569	.	TGG	TG,TGGG,T	204.15	PASS	AC=1,0,0;AF=0.622,0.014,0.014;AN=2;DP=899;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	0/1:12:79:7,1,2,2
chr2	166221883	.	GTATC	G,GTATCTATC	127.95	PASS	AC=2,0;AF=0.576,0.152;AN=2;DP=810;set=variant-variant2-variant3-variant4-variant6-variant8-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	1/1:19:58:0,0,4,15
chr2	166224047	.	G	A	167.87	PASS	AC=2;AF=0.635;AN=2;DP=634;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant6-variant8-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant22-variant23-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:504,36,0:0,0,0,12
chr2	166229643	.	C	T	246.41	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=3.853;FractionInformativeReads=1;MQ=60;MQRankSum=0.589;QD=8.5;ReadPosRankSum=-1.438;SOR=1.781;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,9:29:99:275,0,459:11,9,7,2
chr2	166229922	.	T	C	1904.22	PASS	AC=2;AF=1;AN=2;DP=3166;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1672,153,0:0,0,17,34
chr2	166243574	.	A	G	1021.44	PASS	AC=2;AF=1;AN=2;DP=30;FS=0;FractionInformativeReads=1;MQ=60;QD=34.05;SOR=1.536;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1050,90,0:0,0,10,20
chr2	166246235	.	C	T	1184.35	PASS	AC=1;AF=0.5;AN=2;DP=97;FS=0.785;FractionInformativeReads=1;MQ=60;MQRankSum=-2.453;QD=12.21;ReadPosRankSum=-0.844;SOR=0.83;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:53,44:97:99:1213,0,1575:32,21,28,16
chr2	166247024	.	GA	G	3152.54	PASS	AC=1;AF=0.5;AN=2;DP=246;FS=0;FractionInformativeReads=0.972;MQ=60;MQRankSum=-0.207;QD=12.82;ReadPosRankSum=0.886;SOR=0.705;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:116,123:239:99:3190,0,2942:56,60,59,64
chr2	166248041	.	T	A	3737.04	PASS	AC=1;AF=0.5;AN=2;DP=327;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=3.18;QD=11.43;ReadPosRankSum=-1.622;SOR=0.708;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:169,158:327:99:3765,0,4262:86,83,81,77
chr2	166248172	.	GA	G	3707.06	PASS	AC=1;AF=0.5;AN=2;DP=349;FS=1.316;FractionInformativeReads=0.934;MQ=60;MQRankSum=3.231;QD=10.62;ReadPosRankSum=-1.124;SOR=0.788;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:160,166:326:99:3744,0,3612:86,74,93,73
chr2	166514165	.	C	G	704.66	PASS	AC=2;AF=0.633;AN=2;DP=1361;MQ=60;set=variant2-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant25-variant26-variant27-variant28-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,37:37:99:1253,111,0:0,0,25,12
chr2	166514594	.	A	G	534.42	PASS	AC=2;AF=0.793;AN=2;DP=881;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:695,66,0:0,0,8,14
chr2	166535918	.	C	T	2895.02	PASS	AC=1;AF=0.712;AN=2;DP=3720;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:54,52:106:99:1376,0,1461:30,24,30,22
chr2	166536698	.	A	G	1112.99	PASS	AC=1;AF=0.5;AN=2;DP=66;FS=0.961;FractionInformativeReads=1;MQ=60;MQRankSum=1.345;QD=16.86;ReadPosRankSum=-2.657;SOR=0.674;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,40:66:99:1141,0,718:12,14,21,19
chr2	166537780	.	T	C	4242.32	PASS	AC=1;AF=0.5;AN=2;DP=342;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.694;QD=12.4;ReadPosRankSum=-0.282;SOR=0.684;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:157,185:342:99:4271,0,3775:76,81,90,95
chr2	166538270	.	T	C	159.53	PASS	AC=1;AF=0.75;AN=2;DP=14;FS=0;FractionInformativeReads=1;MQRankSum=0;ReadPosRankSum=-1.067;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,6:8:48:165,0,48:2,0,5,1
chr2	166538337	.	G	GTA	284.69	PASS	AC=1;AF=0.5;AN=2;DP=84;FS=7.708;FractionInformativeReads=0.893;MQ=60;MQRankSum=-0.114;QD=3.39;ReadPosRankSum=3.229;SOR=1.839;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:55,20:75:99:322,0,2103:33,22,16,4
chr2	166538339	.	G	A,GTA	2741.77	PASS	AC=1,0;AF=0.393,0.304;AN=2;DP=2598;set=variant3-variant4-variant6-variant-variant2-variant12-variant13-variant15-variant16-variant5-variant8-variant17-variant20-variant21-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant35-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/1:88:99:29,19,27,13
chr2	166539042	.	A	G	15301	PASS	AC=1;AF=0.706;AN=2;DP=15415;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:190,200:390:99:5228,0,4697:87,103,94,106
chr2	166539534	.	A	G	1230.59	PASS	AC=1;AF=0.5;AN=2;DP=74;FS=0.924;FractionInformativeReads=1;MQ=60;MQRankSum=-2.131;QD=16.63;ReadPosRankSum=1.207;SOR=0.498;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,33:74:99:1259,0,2724:27,14,20,13
chr2	166539537	.	C	T	1230.59	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=0.92;FractionInformativeReads=1;MQ=60;MQRankSum=0.639;QD=16.86;ReadPosRankSum=2.707;SOR=0.559;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,32:73:99:1259,0,2724:27,14,20,12
chr2	166539892	.	G	C	3395.66	PASS	AC=1;AF=0.5;AN=2;DP=293;FS=1.397;FractionInformativeReads=1;MQ=60;MQRankSum=2.47;QD=11.59;ReadPosRankSum=0.648;SOR=0.784;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:152,141:293:99:3424,0,3761:68,84,60,81
chr2	166540080	.	A	G	1635.31	PASS	AC=1;AF=0.5;AN=2;DP=124;FS=1.441;FractionInformativeReads=1;MQ=60;MQRankSum=-0.205;QD=13.19;ReadPosRankSum=-0.38;SOR=0.54;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:65,59:124:99:1664,0,1951:38,27,32,27
chr2	166541309	.	C	T	3269.96	PASS	AC=1;AF=0.5;AN=2;DP=273;FS=0.927;FractionInformativeReads=1;MQ=60;MQRankSum=1.681;QD=11.98;ReadPosRankSum=-0.691;SOR=0.619;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:146,127:273:99:3298,0,4115:65,81,59,68
chr2	166544553	.	TA	TAA,T,TAAA	1579.4	PASS	AC=1,0,1;AF=0.5,0.012,0.012;AN=2;DP=4520;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-filterInvariant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/3:84:99:5,8,43,28
chr2	166545982	.	C	T	773.21	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=1.227;FractionInformativeReads=1;MQ=60;MQRankSum=0.152;QD=13.57;ReadPosRankSum=2.661;SOR=0.432;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,27:57:99:801,0,894:6,24,7,20
chr2	166618127	.	G	GA	215.93	PASS	AC=1;AF=0.645;AN=2;DP=843;MQ=60;set=variant2-variant5-variant7-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant33-variant35-filterInvariant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,8:19:99:162,0,231:6,5,8,0
chr2	166618262	.	C	T	3707.39	PASS	AC=1;AF=0.676;AN=2;DP=4034;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:65,42:107:99:904,0,1688:35,30,27,15
chr2	166621354	.	T	C	2018.97	PASS	AC=2;AF=0.989;AN=2;DP=3212;FS=0;MQ=60;MQRankSum=0.074;ReadPosRankSum=-1.712;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1925,168,0:0,0,41,15
chr2	166650422	.	A	ACCGTAGC	70.67	PASS	AC=1;AF=0.672;AN=2;DP=229;MQ=60;set=variant2-variant3-variant4-variant5-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,2:9:69:69,0,552:5,2,1,1
chr2	166730291	.	G	C	2408.56	PASS	AC=1;AF=0.5;AN=2;DP=211;FS=1.07;FractionInformativeReads=1;MQ=60;MQRankSum=-1.123;QD=11.41;ReadPosRankSum=0.544;SOR=0.597;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:114,97:211:99:2437,0,2782:64,50,52,45
chr2	166737381	.	T	C	257.9	PASS	AC=1;AF=0.5;AN=2;DP=26;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:4,9:13:99:332,0,144:0,4,0,9
chr2	166756532	.	A	C	113.04	PASS	AC=2;AF=1;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;QD=28.26;SOR=3.258;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:141,12,0:0,0,0,4
chr2	166770120	.	A	G	1023.81	PASS	AC=1;AF=0.64;AN=2;DP=1503;MQ=60;set=variant-variant2-variant4-variant9-variant12-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,24:54:99:544,0,729:14,16,14,10
chr2	166771663	.	C	T	375.32	PASS	AC=2;AF=0.696;AN=2;DP=305;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant9-variant12-variant15-variant16-variant18-variant21-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:492,42,0:0,0,12,2
chr2	166773971	.	G	A	685.08	PASS	AC=1;AF=0.64;AN=2;DP=892;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant9-variant12-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:16,18:34:99:499,0,453:4,12,6,12
chr2	166781242	.	T	TA	204.96	PASS	AC=1;AF=0.64;AN=2;DP=831;set=variant-variant2-variant4-variant9-variant12-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,9:11:31:251,0,31:0,2,2,7
chr2	166788160	.	C	T	759.63	PASS	AC=1;AF=0.5;AN=2;DP=77;FS=1.943;FractionInformativeReads=1;MQ=60;MQRankSum=0.887;QD=9.87;ReadPosRankSum=-1.175;SOR=0.468;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,34:77:99:788,0,1241:28,15,20,14
chr2	166788336	.	T	C	3589.16	PASS	AC=2;AF=1;AN=2;DP=6180;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3722,366,0:0,0,49,73
chr2	166799596	.	T	C	550.31	PASS	AC=2;AF=1;AN=2;DP=604;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:763,54,0:0,0,17,1
chr2	166799893	.	G	A	1003.17	PASS	AC=2;AF=1;AN=2;DP=960;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:527,39,0:0,0,3,10
chr2	166802289	.	CTT	C	169.55	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=2.236;FractionInformativeReads=0.955;MQ=60;MQRankSum=1.051;QD=7.71;ReadPosRankSum=1.44;SOR=0.233;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:207,0,660:3,12,2,4
chr2	166802306	.	ACTGT	A	318.17	PASS	AC=1;AF=0.667;AN=2;DP=254;MQ=60;set=variant-variant2-variant4-variant9-variant12-variant15-variant16-variant18-variant20-variant21-variant22-variant25-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:99:183,0,547:0,9,1,4
chr2	166810161	.	GCCCGCTCA	GCCCGCTCACCCGCTCA,GCCCGCTCACCCGCTCACCCGCTCA,G	2074.86	PASS	AC=1,1,0;AF=0.852,0.068,0.011;AN=2;DP=2726;MQ=60;set=Intersection	GT:DP:GQ:SB	1/2:43:99:0,0,27,16
chr2	166810360	.	C	T	476.23	PASS	AC=1;AF=0.5;AN=2;DP=57;FS=1.082;FractionInformativeReads=1;MQ=60;MQRankSum=0.587;QD=8.35;ReadPosRankSum=2.225;SOR=0.914;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:36,21:57:99:504,0,926:14,22,7,14
chr2	166810373	.	A	G	2009.19	PASS	AC=2;AF=1;AN=2;DP=3250;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,51:51:99:1643,153,0:0,0,18,33
chr2	166810433	.	GT	G	1013.88	PASS	AC=2;AF=1;AN=2;DP=1122;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:631,48,0:0,0,4,12
chr2	166846016	.	G	A	2962.33	PASS	AC=2;AF=0.778;AN=2;DP=8663;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,206:206:99:6314,617,0:0,0,99,107
chr2	166846730	.	A	G	10779.9	PASS	AC=1;AF=0.625;AN=2;DP=3120;MQ=60;set=variant8-variant11-variant15-variant21-variant24-variant26-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:142,175:317:99:4411,0,3476:69,73,79,96
chr2	166847034	.	T	C	1405.51	PASS	AC=2;AF=1;AN=2;DP=2733;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1417,132,0:0,0,18,26
chr2	166847582	.	T	TC	1021.31	PASS	AC=1;AF=0.5;AN=2;DP=83;FS=0;FractionInformativeReads=0.988;MQ=60;MQRankSum=-0.787;QD=12.3;ReadPosRankSum=-1.05;SOR=0.711;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,35:82:99:1059,0,1513:24,23,17,18
chr2	166859332	.	A	G	234.82	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.473;QD=14.68;ReadPosRankSum=0.368;SOR=0.18;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:263,0,305:0,8,1,7
chr2	166868938	.	G	C	94.9	PASS	AC=2;AF=1;AN=2;DP=3;FS=0;FractionInformativeReads=1;MQ=60;QD=31.63;SOR=2.833;set=variant41	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:123,9,0:0,0,0,3
chr2	166892444	.	TAAA	T,TAA	524.59	PASS	AC=2,0;AF=0.779,0.015;AN=2;DP=847;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:DP:GQ:SB	1/1:21:66:0,0,17,4
chr2	166892448	.	A	T	533.33	PASS	AC=2;AF=0.803;AN=2;DP=846;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:972,66,0:0,0,18,4
chr2	166892788	.	C	T	1330.41	PASS	AC=2;AF=0.794;AN=2;DP=4511;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,118:118:99:3949,353,0:0,0,46,72
chr2	166893081	.	G	A	211.3	PASS	AC=2;AF=0.803;AN=2;DP=1046;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:686,60,0:0,0,8,12
chr2	166894120	.	AGTTT	A	142.82	PASS	AC=2;AF=0.845;AN=2;DP=194;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant29-variant31-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:315,21,0:0,0,7,0
chr2	166894230	.	T	C	1158.84	PASS	AC=2;AF=0.794;AN=2;DP=3753;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,100:100:99:3554,300,0:0,0,75,25
chr2	166895913	.	CTTT	CT,C,CTT	763.9	PASS	AC=1,1,0;AF=0.417,0.214,0.107;AN=2;DP=1585;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-filterInvariant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	2/1:32:99:0,0,21,11
chr2	166896143	.	T	G	1093.26	PASS	AC=2;AF=0.794;AN=2;DP=2653;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:2007,200,0:0,0,28,39
chr2	166896287	.	T	G	37.69	PASS	AC=2;AF=0.797;AN=2;DP=293;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:447,36,0:0,0,2,10
chr2	166897864	.	A	G	1067.94	PASS	AC=2;AF=0.794;AN=2;DP=4108;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,89:89:99:2789,267,0:0,0,47,42
chr2	166897989	.	GA	GAA,G	244.84	PASS	AC=1,0;AF=0.6,0.014;AN=2;DP=2020;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-filterInvariant42-variant43-variant44	GT:DP:GQ:SB	0/1:52:74:3,6,20,23
chr2	166900072	.	C	T	887.93	PASS	AC=1;AF=0.5;AN=2;DP=52;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.179;QD=17.08;ReadPosRankSum=0.818;SOR=0.669;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,32:52:99:916,0,568:14,6,22,10
chr2	166900606	.	A	C	323.52	PASS	AC=2;AF=0.794;AN=2;DP=1018;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1260,90,0:0,0,1,29
chr2	166903188	.	A	C	2832.93	PASS	AC=2;AF=0.966;AN=2;DP=3254;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2133,216,0:0,0,45,27
chr2	166903445	.	T	C	1274.92	PASS	AC=1;AF=0.779;AN=2;DP=3834;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,61:117:99:1492,0,1331:24,32,27,34
chr2	166904346	.	G	A	1012.12	PASS	AC=2;AF=0.794;AN=2;DP=1886;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2012,186,0:0,0,23,39
chr2	166905284	.	G	T	436.09	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=2.046;FractionInformativeReads=1;MQ=60;MQRankSum=1.306;QD=20.77;ReadPosRankSum=0.56;SOR=0.333;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,14:21:99:464,0,201:6,1,10,4
chr2	166905480	.	G	A	1032.95	PASS	AC=1;AF=0.779;AN=2;DP=2101;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:652,0,801:13,21,13,18
chr2	166909559	.	C	A	415.62	PASS	AC=1;AF=0.779;AN=2;DP=1796;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,28:56:99:724,0,740:9,19,10,18
chr2	166915014	.	A	G	606	PASS	AC=1;AF=0.625;AN=2;DP=115;FractionInformativeReads=1;MQ=60;set=variant8-variant11-variant15-variant21-variant24-variant26-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:179,0,446:11,1,6,1
chr2	166915118	.	A	G	973.99	PASS	AC=1;AF=0.5;AN=2;DP=120;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,39:65:99:1025,0,527:15,11,23,16
chr2	166915335	.	C	A	46.73	PASS	AC=1;AF=0.806;AN=2;DP=253;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant18-variant19-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant34-variant35-variant36-variant37-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:220,0,166:0,5,0,6
chr2	166930214	.	T	A	801.76	PASS	AC=2;AF=1;AN=2;DP=987;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,30:30:90:1038,90,0:0,0,7,23
chr2	167052542	.	C	T	1380.35	PASS	AC=1;AF=0.636;AN=2;DP=3466;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,43:85:99:1113,0,1155:30,12,25,18
chr2	167052555	.	CTTAAAAAAGTT	C	2203.49	PASS	AC=2;AF=0.647;AN=2;DP=4315;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,90:90:99:4044,272,0:0,0,60,30
chr2	167053046	.	G	C	843.35	PASS	AC=1;AF=0.5;AN=2;DP=143;FractionInformativeReads=1;MQ=60;set=variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:32,29:61:99:676,0,736:18,14,13,16
chr2	167053998	.	A	C	5367.13	PASS	AC=1;AF=0.5;AN=2;DP=756;FractionInformativeReads=0.997;MQ=60;set=variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:195,161:356:99:3995,0,5152:106,89,84,77
chr2	167054934	.	G	GAATC	14674.8	PASS	AC=2;AF=0.791;AN=2;DP=13150;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,296:296:99:13551,925,0:0,0,175,121
chr2	167060449	.	A	T	1154.01	PASS	AC=2;AF=0.895;AN=2;DP=1557;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,33:33:99:1126,99,0:0,0,23,10
chr2	167060789	.	C	G	963.39	PASS	AC=1;AF=0.5;AN=2;DP=70;FS=0;FractionInformativeReads=0.986;MQ=60;MQRankSum=-1.18;QD=13.76;ReadPosRankSum=0.684;SOR=0.791;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:30,39:69:99:992,0,635:13,17,16,23
chr2	167060980	.	GAAAC	G	212.45	PASS	AC=2;AF=0.934;AN=2;DP=327;FS=0;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:315,21,0:0,0,2,5
chr2	167085124	.	T	G	272.94	PASS	AC=2;AF=0.895;AN=2;DP=638;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:706,60,0:0,0,15,5
chr2	167085141	.	CTT	C	711.08	PASS	AC=2;AF=0.798;AN=2;DP=965;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:1080,72,0:0,0,17,7
chr2	167090042	.	G	A	701.11	PASS	AC=2;AF=0.895;AN=2;DP=864;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:638,60,0:0,0,7,13
chr2	167099158	.	A	G	2986.61	PASS	AC=2;AF=0.895;AN=2;DP=2905;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2377,235,0:0,0,29,50
chr2	167133479	.	ATCT	A	2252.89	PASS	AC=2;AF=0.667;AN=2;DP=382;FractionInformativeReads=1;MQ=60;set=variant10-variant22-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:4669,313,0:0,0,75,26
chr2	167133482	.	T	TAA	2252.87	PASS	AC=2;AF=0.667;AN=2;DP=382;FractionInformativeReads=1;MQ=60;set=variant10-variant22-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,101:101:99:4669,313,0:0,0,75,26
chr2	167133929	.	G	T	206.61	PASS	AC=2;AF=0.591;AN=2;DP=187;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant18-variant19-variant22-variant32-variant36-variant38-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:940,66,0:0,0,1,21
chr2	167137119	.	G	A	1927.93	PASS	AC=2;AF=0.729;AN=2;DP=2890;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,67:67:99:1939,201,0:0,0,30,37
chr2	167137243	.	T	A	115.37	PASS	AC=2;AF=0.667;AN=2;DP=42;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant22-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:276,24,0:0,0,4,4
chr2	167141389	.	A	G	184.97	PASS	AC=2;AF=0.667;AN=2;DP=65;FractionInformativeReads=1;MQ=60;set=variant10-variant22-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:915,78,0:0,0,6,20
chr2	167142786	.	A	G	282.63	PASS	AC=2;AF=0.667;AN=2;DP=42;FS=0;FractionInformativeReads=1;MQ=60;set=variant10-variant22-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:405,27,0:0,0,9,0
chr2	167142979	.	C	T	1427.74	PASS	AC=2;AF=0.667;AN=2;DP=310;FractionInformativeReads=1;MQ=60;set=variant10-variant22-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2494,246,0:0,0,39,43
chr2	167144974	.	A	T	933.22	PASS	AC=2;AF=0.729;AN=2;DP=818;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant34-variant36-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:532,45,0:0,0,12,3
chr2	167145106	.	C	A	1257.91	PASS	AC=2;AF=0.667;AN=2;DP=230;FractionInformativeReads=1;MQ=60;set=variant10-variant22-variant41	GT:AD:DP:GQ:PL:SB	1/1:2,54:56:78:1563,78,0:1,1,25,29
chr2	167145152	.	G	A	535.39	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=2.359;FractionInformativeReads=1;MQ=60;MQRankSum=-1.24;QD=10.5;ReadPosRankSum=2.3;SOR=0.42;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,23:51:99:564,0,729:11,17,11,12
chr2	167149693	.	G	A	2290.9	PASS	AC=2;AF=0.725;AN=2;DP=2319;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,53:53:99:1880,159,0:0,0,41,12
chr2	167162277	.	G	A	2855.82	PASS	AC=2;AF=0.837;AN=2;DP=5928;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4471,469,0:0,0,77,80
chr2	167163043	.	T	C	4259.74	PASS	AC=2;AF=0.788;AN=2;DP=4752;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,94:94:99:2810,281,0:0,0,44,50
chr2	167163199	.	A	T	871.94	PASS	AC=2;AF=0.788;AN=2;DP=1037;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:690,66,0:0,0,6,16
chr2	167163372	.	T	C	331.77	PASS	AC=2;AF=0.795;AN=2;DP=492;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:42:576,42,0:0,0,10,3
chr2	167163373	.	C	A	331.77	PASS	AC=2;AF=0.795;AN=2;DP=502;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:576,42,0:0,0,11,3
chr2	167163663	.	C	T	1976.34	PASS	AC=2;AF=0.788;AN=2;DP=2902;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,61:61:99:1962,183,0:0,0,27,34
chr2	167168093	.	C	T	3316.44	PASS	AC=1;AF=0.756;AN=2;DP=4838;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:57,48:105:99:1089,0,1434:38,19,30,18
chr2	167232463	.	C	A	267.82	PASS	AC=1;AF=0.579;AN=2;DP=772;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant10-variant13-variant15-variant17-variant18-variant19-variant25-variant32-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,24:39:99:592,0,496:2,13,9,15
chr2	167261334	.	GAAAA	GAA,GAAA,G,GAAAAAAAAAAAAAAA,GA	94.17	PASS	AC=1,0,0,0,0;AF=0.205,0.227,0.023,0.023,0.023;AN=2;DP=528;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant10-variant12-variant13-variant14-variant16-variant21-variant22-variant24-variant27-variant31-variant32-variant33-variant36-variant39-variant41	GT:DP:GQ:SB	0/1:7:72:2,2,2,1
chr2	167279922	.	C	A	298.58	PASS	AC=2;AF=0.768;AN=2;DP=1258;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:889,84,0:0,0,9,19
chr2	167744863	.	T	C	106.62	PASS	AC=1;AF=0.5;AN=2;DP=15;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.849;QD=7.11;ReadPosRankSum=-1.501;SOR=0.16;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,4:15:99:135,0,449:11,0,4,0
chr2	167759948	.	C	T	1017.47	PASS	AC=2;AF=0.667;AN=2;DP=1907;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1392,126,0:0,0,29,13
chr2	167992286	.	T	C	172.45	PASS	AC=2;AF=0.605;AN=2;DP=246;MQ=60;set=variant4-variant6-variant8-variant10-variant14-variant15-variant17-variant18-variant22-variant28-variant30-variant33-variant34-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:214,15,0:0,0,5,0
chr2	168074535	.	G	A	175.47	PASS	AC=1;AF=0.6;AN=2;DP=31;FS=0;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant14-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:98:98,0,205:4,1,3,0
chr2	168096268	.	A	AT	100.39	PASS	AC=2;AF=0.7;AN=2;DP=154;MQ=60;set=variant4-variant11-variant14-variant19-variant20-variant22-variant30-variant36-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:33:300,33,0:0,0,10,0
chr2	168098199	.	A	C	96.36	PASS	AC=2;AF=0.682;AN=2;DP=177;FractionInformativeReads=1;set=variant4-variant11-variant14-variant19-variant20-variant22-variant30-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:544,45,0:0,0,11,4
chr2	168099738	.	T	C	1312.06	PASS	AC=2;AF=0.647;AN=2;DP=1579;MQ=60;set=variant4-variant8-variant11-variant14-variant18-variant19-variant20-variant22-variant28-variant30-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,73:74:99:2371,176,0:1,0,44,29
chr2	168099775	.	C	G	2110.73	PASS	AC=2;AF=0.682;AN=2;DP=1066;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant14-variant19-variant20-variant22-variant30-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,82:83:99:3527,162,0:1,0,48,34
chr2	168099796	.	T	C	2110.22	PASS	AC=2;AF=0.682;AN=2;DP=1096;MQ=60;set=variant4-variant11-variant14-variant19-variant20-variant22-variant30-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,82:83:99:3479,159,0:1,0,51,31
chr2	168100905	.	A	G	1107.18	PASS	AC=1;AF=0.5;AN=2;DP=87;FS=7.038;FractionInformativeReads=1;MQ=60;MQRankSum=0.786;QD=12.73;ReadPosRankSum=1.44;SOR=0.523;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:42,45:87:99:1135,0,1202:16,26,24,21
chr2	168103304	.	G	A	979.05	PASS	AC=1;AF=0.636;AN=2;DP=923;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant14-variant19-variant20-variant22-variant30-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,27:86:99:617,0,1571:26,33,10,17
chr2	168103863	.	G	A	1347.43	PASS	AC=1;AF=0.636;AN=2;DP=997;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant14-variant19-variant20-variant22-variant30-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,49:95:99:1173,0,1068:20,26,26,23
chr2	168103925	.	A	G	1143.64	PASS	AC=1;AF=0.571;AN=2;DP=551;MQ=60;set=variant4-variant11-variant14-variant22-variant30-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:35,33:68:99:871,0,1084:17,18,16,17
chr2	168104199	.	C	T	1928.71	PASS	AC=1;AF=0.571;AN=2;DP=832;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant14-variant22-variant30-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:69,52:121:99:1244,0,1705:33,36,19,33
chr2	168104370	.	A	C	709.06	PASS	AC=1;AF=0.571;AN=2;DP=395;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant14-variant22-variant30-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,19:38:99:556,0,489:7,12,13,6
chr2	168104627	.	G	A	899.15	PASS	AC=1;AF=0.636;AN=2;DP=714;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant14-variant19-variant20-variant22-variant30-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,26:54:99:622,0,692:18,10,11,15
chr2	168104988	.	G	T	994.2	PASS	AC=1;AF=0.571;AN=2;DP=518;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant14-variant22-variant30-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,14:58:99:268,0,1228:24,20,6,8
chr2	168106085	.	G	A	1221.94	PASS	AC=1;AF=0.571;AN=2;DP=570;MQ=60;set=variant4-variant11-variant14-variant22-variant30-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:38,41:79:99:1036,0,924:17,21,20,21
chr2	168106246	.	G	A	1493.15	PASS	AC=2;AF=0.682;AN=2;DP=854;MQ=60;set=variant4-variant11-variant14-variant19-variant20-variant22-variant30-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,63:63:99:1966,189,0:0,0,30,33
chr2	168106610	.	G	A	899.34	PASS	AC=1;AF=0.5;AN=2;DP=86;FS=0;FractionInformativeReads=0.988;MQ=60;MQRankSum=0.858;QD=10.46;ReadPosRankSum=-1.045;SOR=0.708;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:49,36:85:99:928,0,1366:27,22,20,16
chr2	168107155	.	G	A	1765.48	PASS	AC=1;AF=0.636;AN=2;DP=1291;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant14-variant19-variant20-variant22-variant30-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:44,46:90:99:1146,0,1283:27,17,25,21
chr2	168107491	.	A	G	2047.63	PASS	AC=1;AF=0.636;AN=2;DP=1035;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant14-variant19-variant20-variant22-variant30-variant36-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:49,47:96:99:1219,0,1299:22,27,17,30
chr2	168108357	.	A	G	1932.68	PASS	AC=2;AF=0.647;AN=2;DP=2421;MQ=60;set=variant4-variant8-variant11-variant14-variant18-variant19-variant20-variant22-variant28-variant30-variant34-variant36-variant37-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3674,364,0:0,0,63,59
chr2	168115710	.	T	G	1178.65	PASS	AC=1;AF=0.571;AN=2;DP=712;FractionInformativeReads=1;MQ=60;set=variant4-variant11-variant14-variant22-variant30-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:55,36:91:99:867,0,1576:30,25,20,16
chr2	168115769	.	G	C	1678.66	PASS	AC=1;AF=0.571;AN=2;DP=861;MQ=60;set=variant4-variant11-variant14-variant22-variant30-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:56,46:102:99:1223,0,1553:33,23,25,21
chr2	168115797	.	G	C	2277.47	PASS	AC=1;AF=0.583;AN=2;DP=799;MQ=60;set=variant4-variant14-variant22-variant30-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,49:100:99:1250,0,1494:29,22,26,23
chr2	168116187	.	C	A	5030.61	PASS	AC=1;AF=0.571;AN=2;DP=1882;MQ=60;set=variant4-variant11-variant14-variant22-variant30-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:135,83:218:99:2049,0,3779:58,77,33,50
chr2	168116189	.	G	A	5030.61	PASS	AC=2;AF=0.643;AN=2;DP=1841;MQ=60;set=variant4-variant11-variant14-variant22-variant30-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,210:210:99:7833,634,0:0,0,87,123
chr2	168116318	.	G	A	522.79	PASS	AC=1;AF=0.571;AN=2;DP=304;MQ=60;set=variant4-variant11-variant14-variant22-variant30-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,25:59:99:778,0,1141:5,29,3,22
chr2	168571521	.	C	T	1563.17	PASS	AC=1;AF=0.5;AN=2;DP=217;FractionInformativeReads=1;set=variant18-variant41	GT:AD:DP:GQ:PL:SB	0/1:45,50:95:99:1319,0,1154:25,20,31,19
chr2	168572438	.	G	A	4595.19	PASS	AC=2;AF=0.989;AN=2;DP=6933;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,122:122:99:3850,365,0:0,0,49,73
chr2	168725415	.	T	C	800.37	PASS	AC=1;AF=0.5;AN=2;DP=116;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:26,37:63:99:949,0,693:18,8,23,14
chr2	168726176	.	T	C	636.59	PASS	AC=1;AF=0.5;AN=2;DP=152;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,38:91:99:888,0,1548:28,25,21,17
chr2	168726543	.	T	C	1775.37	PASS	AC=1;AF=0.5;AN=2;DP=454;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:97,148:245:99:3854,0,2231:52,45,84,64
chr2	168726970	.	C	T	3165.62	PASS	AC=1;AF=0.5;AN=2;DP=517;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:133,146:279:99:3957,0,3671:53,80,59,87
chr2	168811352	.	C	T	2365.41	PASS	AC=1;AF=0.5;AN=2;DP=194;FS=1.102;FractionInformativeReads=1;MQ=60;MQRankSum=0.232;QD=12.19;ReadPosRankSum=1.526;SOR=0.78;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:100,94:194:99:2394,0,2554:50,50,49,45
chr2	168811978	.	A	AGATCAG	838.22	PASS	AC=1;AF=0.5;AN=2;DP=86;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:25,18:43:99:798,0,1744:13,12,10,8
chr2	168986154	.	A	G	2473.9	PASS	AC=2;AF=0.805;AN=2;DP=3283;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,87:87:99:2461,259,0:0,0,38,49
chr2	168996775	.	T	C	413.67	PASS	AC=1;AF=0.6;AN=2;DP=1276;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,20:44:99:554,0,832:19,5,16,4
chr2	168997097	.	A	G	713.2	PASS	AC=1;AF=0.6;AN=2;DP=1686;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant17-variant18-variant20-variant23-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,34:65:99:1075,0,933:15,16,22,12
chr2	169104194	.	C	T	962.78	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.025;QD=22.92;ReadPosRankSum=-0.303;SOR=0.787;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:19,23:42:99:991,0,1048:12,7,15,8
chr2	169104199	.	G	A	953.77	PASS	AC=1;AF=0.5;AN=2;DP=49;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.633;QD=19.46;ReadPosRankSum=-1.095;SOR=0.861;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:22,27:49:99:982,0,1126:13,9,17,10
chr2	169104395	.	G	A	2047.39	PASS	AC=2;AF=1;AN=2;DP=2881;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1699,164,0:0,0,20,35
chr2	169312342	.	CTTT	CT,CTT,C,CCTTTTTT	75.1	PASS	AC=0,0,0,1;AF=0.333,0.389,0.111,0.056;AN=2;DP=89;set=variant5-variant9-variant17-variant18-variant21-variant24-variant26-variant28-variant41	GT:DP:GQ:SB	0/4:10:72:3,3,4,0
chr2	169312575	.	A	G	1826.91	PASS	AC=1;AF=0.66;AN=2;DP=2767;MQ=60;set=variant4-variant5-variant6-variant8-variant9-variant10-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant31-variant33-variant34-variant35-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:55,33:88:99:757,0,1548:29,26,19,14
chr2	169312649	.	T	C	3529.78	PASS	AC=1;AF=0.989;AN=2;DP=5927;MQ=60;MQRankSum=1.894;ReadPosRankSum=-0.99;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:65,53:118:99:1141,0,1562:36,29,27,26
chr2	169418006	.	C	A	328.41	PASS	AC=1;AF=0.943;AN=2;DP=774;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:112,0,155:0,4,1,3
chr2	169439286	.	A	C	1888.35	PASS	AC=1;AF=0.5;AN=2;DP=522;FractionInformativeReads=1;MQ=60;set=variant4-variant10-variant18-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,46:90:99:1220,0,1196:32,12,32,14
chr2	169487610	.	GT	G	329.62	PASS	AC=1;AF=0.989;AN=2;DP=743;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:9,6:15:99:124,0,208:2,7,2,4
chr2	169622302	.	G	C	516.51	PASS	AC=1;AF=0.5;AN=2;DP=27;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.28;QD=19.13;ReadPosRankSum=0.628;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,17:27:99:545,0,267:2,8,3,14
chr2	169626887	.	G	T	2321.05	PASS	AC=1;AF=0.5;AN=2;DP=191;FS=3.306;FractionInformativeReads=1;MQ=60;MQRankSum=-1.053;QD=12.15;ReadPosRankSum=-0.534;SOR=0.503;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:107,84:191:99:2349,0,3227:63,44,45,39
chr2	169627363	.	T	C	5211.51	PASS	AC=1;AF=0.5;AN=2;DP=447;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.559;QD=11.66;ReadPosRankSum=-1.018;SOR=0.712;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:233,214:447:99:5240,0,5869:110,123,100,114
chr2	169628330	.	G	A	2236.13	PASS	AC=1;AF=0.5;AN=2;DP=212;FS=2.365;FractionInformativeReads=1;MQ=60;MQRankSum=-1.151;QD=10.55;ReadPosRankSum=-2.032;SOR=0.884;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:118,94:212:99:2264,0,3082:58,60,42,52
chr2	169629059	.	T	G	3855.7	PASS	AC=1;AF=0.5;AN=2;DP=343;FS=2.9;FractionInformativeReads=1;MQ=60;MQRankSum=2.757;QD=11.24;ReadPosRankSum=-1.522;SOR=0.545;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:186,157:343:99:3884,0,4546:79,107,73,84
chr2	169630483	.	G	A	725.47	PASS	AC=2;AF=0.72;AN=2;DP=2957;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:1978,186,0:0,0,33,29
chr2	169630679	.	T	C	499.71	PASS	AC=1;AF=0.5;AN=2;DP=50;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.214;QD=9.99;ReadPosRankSum=-0.019;SOR=0.592;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:27,23:50:99:528,0,655:11,16,10,13
chr2	169630835	.	G	T	1101.96	PASS	AC=2;AF=0.768;AN=2;DP=1451;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:985,84,0:0,0,17,11
chr2	169631152	.	C	CA	1662.55	PASS	AC=1;AF=0.5;AN=2;DP=410;MQ=60;set=variant5-variant41	GT:AD:DP:GQ:PL:SB	0/1:90,68:158:99:1247,0,1831:43,47,36,32
chr2	169631601	.	A	C	1379.43	PASS	AC=1;AF=0.5;AN=2;DP=124;FS=6.884;FractionInformativeReads=1;MQ=60;MQRankSum=0.441;QD=11.12;ReadPosRankSum=-0.365;SOR=0.746;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:70,54:124:99:1408,0,1958:40,30,24,30
chr2	169643222	.	C	T	205.64	PASS	AC=2;AF=0.583;AN=2;DP=313;FractionInformativeReads=1;MQ=60;set=variant6-variant9-variant11-variant12-variant13-variant18-variant20-variant25-variant26-variant28-variant29-variant30-variant31-variant33-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:432,45,0:0,0,7,8
chr2	169644520	.	G	C,A	314.36	PASS	AC=0,1;AF=0.25,0.25;AN=2;DP=40;FractionInformativeReads=1;MQ=60;set=variant28-variant41	GT:DP:GQ:SB	0/2:27:99:7,10,3,7
chr2	169657551	.	T	G	68.25	PASS	AC=1;AF=0.846;AN=2;DP=455;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,5:9:99:149,0,113:2,2,3,2
chr2	169658944	.	A	C	2501.37	PASS	AC=1;AF=0.737;AN=2;DP=2743;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:31,33:64:99:838,0,725:18,13,20,13
chr2	169674655	.	T	C	157.65	PASS	AC=1;AF=0.833;AN=2;DP=414;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:186,0,431:4,4,3,2
chr2	169674663	.	A	T	160.64	PASS	AC=1;AF=0.833;AN=2;DP=413;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,5:13:99:186,0,431:4,4,3,2
chr2	169674764	.	C	G	452.95	PASS	AC=1;AF=0.774;AN=2;DP=419;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant24-variant25-variant26-variant27-variant29-variant30-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:75:151,0,75:2,2,3,3
chr2	169690729	.	T	C	795.67	PASS	AC=1;AF=0.643;AN=2;DP=1773;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant35-variant36-variant38-variant39-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,37:60:99:883,0,513:15,8,19,18
chr2	169707777	.	T	C	1087.97	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=0.739;FractionInformativeReads=1;MQ=60;MQRankSum=-1.236;QD=10.77;ReadPosRankSum=-1.627;SOR=0.614;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,44:101:99:1116,0,1503:26,31,21,23
chr2	169712400	.	T	TA	1734.9	PASS	AC=1;AF=0.5;AN=2;DP=107;FS=1.575;FractionInformativeReads=0.991;MQ=60;MQRankSum=-0.497;QD=16.21;ReadPosRankSum=0.225;SOR=0.528;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,56:106:99:1772,0,1538:30,20,31,25
chr2	169712594	.	G	A	1115.01	PASS	AC=1;AF=0.5;AN=2;DP=304;FractionInformativeReads=1;MQ=60;set=variant3-variant16-variant17-variant18-variant22-variant25-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,13:29:99:480,0,1346:1,15,2,11
chr2	169712596	.	T	C	1115.01	PASS	AC=1;AF=0.5;AN=2;DP=289;FractionInformativeReads=1;MQ=60;set=variant3-variant16-variant17-variant18-variant22-variant25-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:16,11:27:99:480,0,1346:1,15,2,9
chr2	169713084	.	T	TA	478.84	PASS	AC=1;AF=0.65;AN=2;DP=2103;set=variant2-variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant35-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,27:75:99:498,0,1054:31,17,15,12
chr2	169716114	.	T	C	1120.19	PASS	AC=1;AF=0.5;AN=2;DP=1056;FractionInformativeReads=1;MQ=60;set=variant3-variant16-variant17-variant18-variant22-variant25-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,39:90:99:846,0,1226:24,27,17,22
chr2	169717541	.	T	C	1009.87	PASS	AC=1;AF=0.643;AN=2;DP=1395;MQ=60;set=variant3-variant4-variant6-variant7-variant8-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant20-variant22-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant35-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,30:50:99:764,0,499:7,13,11,19
chr2	169717624	.	C	T	71.44	PASS	AC=2;AF=0.833;AN=2;DP=416;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:457,33,0:0,0,0,11
chr2	169718301	.	G	A	196.2	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=0;FractionInformativeReads=1;MQ=60;set=variant3-variant16-variant17-variant18-variant25-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:190,0,189:5,2,5,1
chr2	169718633	.	G	C	335.86	PASS	AC=1;AF=0.5;AN=2;DP=29;FS=2.062;FractionInformativeReads=1;MQ=60;MQRankSum=0.742;QD=11.58;ReadPosRankSum=-1.91;SOR=1.473;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,11:29:99:364,0,519:4,14,1,10
chr2	169721377	.	G	A	1737.2	PASS	AC=2;AF=0.826;AN=2;DP=4480;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3273,309,0:0,0,70,34
chr2	169721640	.	A	G	2928.24	PASS	AC=1;AF=0.5;AN=2;DP=1492;MQ=60;set=variant3-variant16-variant17-variant18-variant22-variant25-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,68:145:99:1702,0,1902:29,48,29,39
chr2	169721944	.	A	T	275.78	PASS	AC=1;AF=0.714;AN=2;DP=609;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant19-variant21-variant22-variant24-variant28-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,5:14:89:89,0,220:4,5,1,4
chr2	169727863	.	A	G	438.56	PASS	AC=1;AF=0.5;AN=2;DP=206;FractionInformativeReads=1;set=variant3-variant16-variant17-variant18-variant22-variant25-variant37-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:159,0,230:6,3,5,4
chr2	169727879	.	G	GA	143.86	PASS	AC=2;AF=0.837;AN=2;DP=1032;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:99:1075,99,0:0,0,21,10
chr2	169728069	.	GAAA	G	603.83	PASS	AC=2;AF=0.826;AN=2;DP=2206;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1956,138,0:0,0,23,23
chr2	169758147	.	C	T	420.93	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.673;QD=26.31;ReadPosRankSum=1.883;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,13:16:79:449,0,79:0,3,2,11
chr2	169763148	.	T	C	1502.67	PASS	AC=2;AF=0.75;AN=2;DP=4300;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,82:83:99:2501,238,0:1,0,42,40
chr2	169764546	.	C	G	1720.63	PASS	AC=1;AF=0.545;AN=2;DP=1407;MQ=60;set=variant10-variant12-variant21-variant27-variant31-variant32-variant34-variant37-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:55,58:113:99:1705,0,1265:24,31,22,36
chr2	169779712	.	T	C	386.53	PASS	AC=1;AF=0.641;AN=2;DP=1266;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,21:36:99:638,0,387:9,6,11,10
chr2	169779764	.	C	T	538.74	PASS	AC=1;AF=0.641;AN=2;DP=1648;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:24,31:55:99:839,0,643:16,8,17,14
chr2	169779896	.	T	C	1238.08	PASS	AC=1;AF=0.632;AN=2;DP=2927;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,38:74:99:958,0,870:15,21,18,20
chr2	169780366	.	T	C	393.49	PASS	AC=1;AF=0.641;AN=2;DP=1028;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant29-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,14:33:99:425,0,670:2,17,1,13
chr2	169789016	.	T	C	538.16	PASS	AC=1;AF=0.645;AN=2;DP=2233;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:36,36:72:99:763,0,852:14,22,16,20
chr2	169791595	.	T	C	611.4	PASS	AC=1;AF=0.5;AN=2;DP=96;FractionInformativeReads=1;MQ=60;SOR=1.27;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:19,28:47:99:862,0,472:14,5,23,5
chr2	169801488	.	A	G	283.93	PASS	AC=2;AF=0.708;AN=2;DP=938;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1296,117,0:0,0,13,26
chr2	169814347	.	A	G	235.36	PASS	AC=2;AF=0.672;AN=2;DP=637;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant12-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:615,51,0:0,0,13,4
chr2	169814655	.	G	T	1212.8	PASS	AC=1;AF=0.638;AN=2;DP=3114;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant30-variant31-variant33-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:74,51:125:99:1152,0,1884:30,44,21,30
chr2	169824739	.	T	TA	502.73	PASS	AC=2;AF=0.706;AN=2;DP=393;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,23:23:72:1080,72,0:0,0,20,3
chr2	169824743	.	C	A	601.77	PASS	AC=2;AF=0.691;AN=2;DP=430;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1125,75,0:0,0,21,4
chr2	169824749	.	C	A	659.17	PASS	AC=2;AF=0.691;AN=2;DP=469;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant29-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1125,75,0:0,0,21,4
chr2	169826877	.	C	T	2667.44	PASS	AC=2;AF=0.681;AN=2;DP=2561;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1458,137,0:0,0,15,31
chr2	169828277	.	G	A	1247.01	PASS	AC=2;AF=0.681;AN=2;DP=1102;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1340,117,0:0,0,27,12
chr2	169828325	.	A	G	2148.28	PASS	AC=2;AF=0.681;AN=2;DP=1901;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:2120,177,0:0,0,40,19
chr2	169830051	.	C	T	325.31	PASS	AC=2;AF=0.681;AN=2;DP=532;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:662,48,0:0,0,15,1
chr2	169830155	.	G	A	2556.32	PASS	AC=2;AF=0.681;AN=2;DP=3182;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,88:88:99:2791,263,0:0,0,51,37
chr2	169830328	.	A	G	2879.77	PASS	AC=2;AF=0.681;AN=2;DP=3569;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,99:99:99:3143,296,0:0,0,44,55
chr2	169830515	.	G	A	724.44	PASS	AC=2;AF=0.738;AN=2;DP=1036;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,28:28:84:932,84,0:0,0,9,19
chr2	169832752	.	C	T	646.77	PASS	AC=1;AF=0.676;AN=2;DP=528;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,11:12:49:502,0,49:1,0,10,1
chr2	169832761	.	G	C	671.5	PASS	AC=1;AF=0.671;AN=2;DP=647;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant23-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,14:15:46:544,0,46:1,0,12,2
chr2	169842809	.	T	C	414.7	PASS	AC=2;AF=0.78;AN=2;DP=745;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:657,60,0:0,0,6,14
chr2	169923927	.	G	A	404.03	PASS	AC=1;AF=0.607;AN=2;DP=219;FractionInformativeReads=1;MQ=60;set=variant7-variant10-variant13-variant15-variant17-variant18-variant19-variant21-variant26-variant28-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:9,9:18:99:213,0,299:1,8,3,6
chr2	169926126	.	C	T	1014.72	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.77;QD=15.86;ReadPosRankSum=2.351;SOR=0.686;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,41:64:99:1043,0,500:10,13,18,23
chr2	169926566	.	G	A	1802.61	PASS	AC=1;AF=0.615;AN=2;DP=759;FractionInformativeReads=1;MQ=60;set=variant7-variant13-variant15-variant17-variant18-variant19-variant21-variant26-variant28-variant31-variant32-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,28:57:99:711,0,902:24,5,19,9
chr2	169926847	.	G	A	1329.97	PASS	AC=1;AF=0.5;AN=2;DP=801;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant14-variant24-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,71:144:99:1912,0,2060:39,34,37,34
chr2	169927200	.	C	T	781.24	PASS	AC=1;AF=0.5;AN=2;DP=488;FractionInformativeReads=1;MQ=60;set=variant2-variant11-variant14-variant24-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,34:71:99:804,0,846:16,21,17,17
chr2	169952233	.	T	C	1614.31	PASS	AC=1;AF=0.567;AN=2;DP=1599;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant15-variant17-variant18-variant19-variant26-variant28-variant31-variant32-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,54:100:99:1781,0,1316:21,25,27,27
chr2	169952530	.	G	C	1393.56	PASS	AC=1;AF=0.567;AN=2;DP=1699;FractionInformativeReads=1;MQ=60;set=variant4-variant7-variant10-variant15-variant17-variant18-variant19-variant26-variant28-variant31-variant32-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:62,66:128:99:1750,0,1628:34,28,36,30
chr2	169984043	.	T	TA,TAA,TAAA,TAAAA	43.76	PASS	AC=0,2,0,0;AF=0.214,0.268,0.089,0.018;AN=2;DP=357;set=variant2-variant4-variant5-variant8-variant9-variant10-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:DP:GQ:SB	2/2:4:12:0,0,2,2
chr2	169984262	.	A	AT,ATT	1559.53	PASS	AC=2,0;AF=0.786,0.024;AN=2;DP=6466;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:125:99:0,0,56,69
chr2	169985338	.	C	T	1359.33	PASS	AC=1;AF=0.5;AN=2;DP=170;MQ=60;set=variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:48,34:82:99:751,0,1345:23,25,16,18
chr2	169989015	.	T	G	593.03	PASS	AC=1;AF=0.5;AN=2;DP=240;FractionInformativeReads=1;MQ=60;set=variant28-variant33-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:33,34:67:99:952,0,894:22,11,24,10
chr2	169997051	.	G	A	1069.2	PASS	AC=1;AF=0.721;AN=2;DP=5343;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,79:137:99:1989,0,1413:23,35,30,49
chr2	169997120	.	A	C	428.28	PASS	AC=1;AF=0.5;AN=2;DP=88;FractionInformativeReads=1;MQ=60;set=variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:30,22:52:99:591,0,932:5,25,6,16
chr2	170003432	.	T	G	1386.06	PASS	AC=1;AF=0.852;AN=2;DP=6080;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:57,62:119:99:1635,0,1419:26,31,32,30
chr2	170010985	.	T	C	324.49	PASS	AC=2;AF=0.852;AN=2;DP=2143;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1548,150,0:0,0,32,18
chr2	170025340	.	C	T	276.3	PASS	AC=2;AF=0.977;AN=2;DP=445;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:553,45,0:0,0,4,11
chr2	170031529	.	TAA	TA,TAAA,T	52.45	PASS	AC=1,0,0;AF=0.364,0.091,0.045;AN=2;DP=141;set=variant-variant2-variant5-variant9-variant12-variant16-variant24-variant27-variant36-variant37-variant41	GT:DP:GQ:SB	0/1:8:28:2,1,5,0
chr2	170032989	.	C	T	1108.82	PASS	AC=1;AF=0.73;AN=2;DP=5062;MQ=60;set=variant2-variant3-variant4-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,65:115:99:1659,0,1183:30,20,41,24
chr2	170050472	.	T	C	461.69	PASS	AC=1;AF=0.565;AN=2;DP=1264;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant16-variant20-variant21-variant24-variant29-variant31-variant32-variant34-variant35-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:23,27:50:99:660,0,533:7,16,9,18
chr2	170050554	.	T	C	127.69	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.638;QD=15.96;ReadPosRankSum=0.922;SOR=1.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:156,0,158:1,3,0,4
chr2	170055432	.	A	G	745.55	PASS	AC=1;AF=0.5;AN=2;DP=42;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.216;QD=17.75;ReadPosRankSum=0.775;SOR=0.743;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,24:42:99:774,0,523:3,15,4,20
chr2	170059190	.	T	C	931.03	PASS	AC=1;AF=0.5;AN=2;DP=1449;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant20-variant24-variant31-variant35-variant36-variant38-variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,25:62:99:794,0,1057:25,12,20,5
chr2	170062078	.	G	C	2934.71	PASS	AC=1;AF=0.5;AN=2;DP=1264;MQ=60;set=variant6-variant11-variant29-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:127,94:221:99:2173,0,3175:64,63,43,51
chr2	170063783	.	T	C	257.04	PASS	AC=1;AF=0.6;AN=2;DP=720;FractionInformativeReads=1;set=variant-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant16-variant21-variant27-variant28-variant33-variant34-variant36-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,16:39:99:441,0,641:6,17,4,12
chr2	170068564	.	A	G	1559.42	PASS	AC=1;AF=0.5;AN=2;DP=122;FS=2.327;FractionInformativeReads=1;MQ=60;MQRankSum=-0.693;QD=12.78;ReadPosRankSum=-2.073;SOR=0.949;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:57,65:122:99:1588,0,1255:30,27,38,27
chr2	170070128	.	T	C	91.5	PASS	AC=1;AF=0.5;AN=2;DP=4;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.727;QD=22.87;ReadPosRankSum=0.727;SOR=1.609;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:1,3:4:34:120,0,34:1,0,3,0
chr2	170077165	.	C	T	413.17	PASS	AC=2;AF=0.635;AN=2;DP=262;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:438,33,0:0,0,1,10
chr2	170082013	.	A	G	583.4	PASS	AC=2;AF=0.636;AN=2;DP=2249;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2533,248,0:0,0,31,52
chr2	170088046	.	G	A	1866.01	PASS	AC=2;AF=0.697;AN=2;DP=2329;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2319,234,0:0,0,46,32
chr2	170088477	.	T	C	2273.45	PASS	AC=2;AF=0.694;AN=2;DP=2955;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2415,233,0:0,0,34,44
chr2	170088506	.	T	C	433.49	PASS	AC=2;AF=0.615;AN=2;DP=1656;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,60:60:99:1946,180,0:0,0,23,37
chr2	170088623	.	C	T	121.48	PASS	AC=2;AF=0.615;AN=2;DP=245;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:389,27,0:0,0,0,9
chr2	170089824	.	T	C	445.5	PASS	AC=2;AF=0.604;AN=2;DP=657;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant37-variant39-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:71:697,71,0:0,0,15,9
chr2	170089851	.	G	A	570.7	PASS	AC=1;AF=0.615;AN=2;DP=494;FractionInformativeReads=1;MQ=60;set=variant-variant5-variant8-variant9-variant11-variant14-variant16-variant24-variant27-variant28-variant33-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:461,0,416:10,5,11,5
chr2	170092395	.	A	G	2289.97	PASS	AC=2;AF=0.611;AN=2;DP=5163;MQ=60;set=variant-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant21-variant24-variant27-variant28-variant32-variant33-variant34-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,166:166:99:4990,498,0:0,0,85,81
chr2	170096018	.	G	A	492.85	PASS	AC=2;AF=0.583;AN=2;DP=1237;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant8-variant9-variant11-variant13-variant14-variant15-variant16-variant19-variant20-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant34-variant37-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,43:43:99:1427,129,0:0,0,29,14
chr2	170099446	.	T	G	1318.27	PASS	AC=2;AF=0.625;AN=2;DP=4530;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,96:96:99:2817,287,0:0,0,55,41
chr2	170099473	.	T	C	1657.66	PASS	AC=2;AF=0.629;AN=2;DP=5054;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,110:110:99:3243,329,0:0,0,59,51
chr2	170099895	.	A	C	1607.34	PASS	AC=2;AF=0.667;AN=2;DP=2398;FractionInformativeReads=1;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:3261,220,0:0,0,45,26
chr2	170099899	.	G	A	1666.47	PASS	AC=2;AF=0.625;AN=2;DP=2577;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,77:77:99:3381,232,0:0,0,48,29
chr2	170103336	.	T	C	1382.82	PASS	AC=2;AF=0.625;AN=2;DP=5986;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,153:153:99:4677,459,0:0,0,64,89
chr2	170103351	.	G	T	1106.69	PASS	AC=2;AF=0.625;AN=2;DP=5013;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant31-variant32-variant33-variant35-variant37-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,149:149:99:4574,447,0:0,0,60,89
chr2	170113541	.	A	C	365.03	PASS	AC=1;AF=0.5;AN=2;DP=22;FS=4.589;FractionInformativeReads=1;MQ=60;MQRankSum=-1.352;QD=16.59;ReadPosRankSum=-0.429;SOR=2.062;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:393,0,272:6,4,10,2
chr2	170115588	.	T	C	2200.5	PASS	AC=2;AF=0.639;AN=2;DP=6238;MQ=60;set=variant-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant34-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:5133,485,0:0,0,97,65
chr2	170129528	.	G	A	3311.03	PASS	AC=2;AF=0.791;AN=2;DP=5397;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,137:137:99:3899,409,0:0,0,68,69
chr2	170129636	.	A	G	1485.71	PASS	AC=2;AF=0.837;AN=2;DP=1897;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,49:49:99:1747,147,0:0,0,10,39
chr2	170134191	.	G	C	737.26	PASS	AC=2;AF=0.872;AN=2;DP=953;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,29:29:87:1130,87,0:0,0,25,4
chr2	170137190	.	A	G	286.77	PASS	AC=1;AF=0.857;AN=2;DP=254;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant26-variant27-variant28-variant30-variant32-variant33-variant35-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:76:78,0,76:0,2,1,1
chr2	170139346	.	C	T	2122.15	PASS	AC=1;AF=0.898;AN=2;DP=3077;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:33,35:68:99:983,0,854:21,12,23,12
chr2	170139639	.	A	G	735.55	PASS	AC=1;AF=0.81;AN=2;DP=872;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,13:28:99:399,0,468:3,12,2,11
chr2	170150671	.	G	A	1497	PASS	AC=1;AF=0.524;AN=2;DP=2070;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant15-variant18-variant22-variant23-variant25-variant27-variant30-variant31-variant33-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,34:75:99:775,0,1004:20,21,18,16
chr2	170163703	.	T	C	1424.67	PASS	AC=1;AF=0.5;AN=2;DP=191;FractionInformativeReads=1;MQ=60;set=variant13-variant41	GT:AD:DP:GQ:PL:SB	0/1:51,36:87:99:941,0,1546:36,15,25,11
chr2	170218816	.	T	C	1437.99	PASS	AC=2;AF=1;AN=2;DP=2537;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,42:42:99:1451,126,0:0,0,30,12
chr2	170218847	.	C	G	2430.02	PASS	AC=2;AF=1;AN=2;DP=3707;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,73:73:99:2307,218,0:0,0,49,24
chr2	170336024	.	G	C	4390.72	PASS	AC=1;AF=0.92;AN=2;DP=10602;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:113,90:203:99:2021,0,2930:57,56,45,45
chr2	170339003	.	C	A	105.17	PASS	AC=1;AF=0.842;AN=2;DP=837;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-filterInvariant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,12:21:99:365,0,261:2,7,4,8
chr2	170359758	.	G	C	864.68	PASS	AC=1;AF=0.5;AN=2;DP=507;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant8-variant11-variant12-variant16-variant19-variant26-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:19,22:41:99:512,0,680:2,17,9,13
chr2	170361415	.	A	G	2280.28	PASS	AC=1;AF=0.92;AN=2;DP=3852;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:41,30:71:99:803,0,984:22,19,16,14
chr2	170361426	.	T	C	2185.33	PASS	AC=1;AF=0.932;AN=2;DP=4084;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:46,29:75:99:708,0,1135:25,21,16,13
chr2	170403030	.	T	C	1678.98	PASS	AC=1;AF=0.672;AN=2;DP=3621;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,52:100:99:1347,0,1164:24,24,27,25
chr2	170411693	.	T	C	957.96	PASS	AC=1;AF=0.75;AN=2;DP=2325;FractionInformativeReads=1;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,35:55:99:946,0,540:11,9,17,18
chr2	170413601	.	A	T	197.38	PASS	AC=1;AF=0.667;AN=2;DP=608;MQ=60;set=variant-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant18-variant19-variant20-variant21-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,9:31:99:224,0,643:16,6,7,2
chr2	170425520	.	A	C	786.17	PASS	AC=1;AF=0.5;AN=2;DP=301;FractionInformativeReads=1;set=variant3-variant5-variant6-variant8-variant11-variant12-variant19-variant26-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,13:22:99:516,0,473:7,2,10,3
chr2	170425523	.	A	C	1436.9	PASS	AC=1;AF=0.784;AN=2;DP=950;FractionInformativeReads=1;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:510,0,516:8,4,10,3
chr2	170430282	.	G	A	302.98	PASS	AC=1;AF=0.5;AN=2;DP=43;FS=2.675;FractionInformativeReads=1;MQ=60;MQRankSum=-0.344;QD=7.05;ReadPosRankSum=-0.93;SOR=0.615;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:28,15:43:99:331,0,718:16,12,7,8
chr2	170463679	.	A	G	782.99	PASS	AC=1;AF=0.5;AN=2;DP=322;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant6-variant8-variant11-variant12-variant19-variant26-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:13,13:26:99:361,0,294:4,9,3,10
chr2	170488454	.	A	G	486.64	PASS	AC=2;AF=0.75;AN=2;DP=2695;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2529,249,0:0,0,34,49
chr2	170489970	.	A	G	3336.15	PASS	AC=1;AF=0.5;AN=2;DP=2387;MQ=60;set=variant2-variant9-variant17-variant28-variant31-variant34-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:136,136:272:99:2971,0,3138:62,74,63,73
chr2	170490173	.	T	TA	188.58	PASS	AC=1;AF=0.5;AN=2;DP=96;MQ=60;set=variant3-variant5-variant6-variant8-variant19-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:3,3:6:94:94,0,94:0,3,0,3
chr2	170492567	.	A	G	93.1	PASS	AC=2;AF=0.75;AN=2;DP=755;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,15:15:45:500,45,0:0,0,12,3
chr2	170492584	.	T	C	110.88	PASS	AC=2;AF=0.769;AN=2;DP=1086;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:916,75,0:0,0,20,5
chr2	170493103	.	T	A	171.33	PASS	AC=2;AF=0.75;AN=2;DP=1304;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-filterInvariant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,32:32:96:1044,96,0:0,0,20,12
chr2	170493863	.	A	G	916.03	PASS	AC=1;AF=0.568;AN=2;DP=1051;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant24-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,12:45:99:269,0,937:17,16,8,4
chr2	170494851	.	TA	TAA,T	1638.73	PASS	AC=1,0;AF=0.5,0.033;AN=2;DP=2673;MQ=60;set=variant3-variant5-variant6-variant8-variant10-variant11-variant12-variant13-variant14-variant19-variant26-variant39-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:110:99:29,35,22,24
chr2	170495928	.	AT	A	1403.32	PASS	AC=2;AF=0.75;AN=2;DP=3749;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,78:78:99:2382,235,0:0,0,36,42
chr2	170496015	.	C	T	2463.78	PASS	AC=1;AF=0.5;AN=2;DP=1693;MQ=60;set=variant3-variant5-variant6-variant8-variant11-variant12-variant19-variant26-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:49,56:105:99:1547,0,1181:26,23,28,28
chr2	170497646	.	GCT	G	4923.17	PASS	AC=1;AF=0.568;AN=2;DP=7013;MQ=60;set=variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant15-variant16-variant17-variant19-variant24-variant28-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:131,139:270:99:5097,0,4829:61,70,69,70
chr2	170502343	.	A	T	1424.64	PASS	AC=1;AF=0.5;AN=2;DP=969;MQ=60;set=variant3-variant5-variant6-variant8-variant11-variant12-variant19-variant26-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:35,34:69:99:896,0,1037:17,18,17,17
chr2	170502401	.	G	A	1242.38	PASS	AC=1;AF=0.5;AN=2;DP=713;FractionInformativeReads=1;MQ=60;set=variant2-variant9-variant17-variant28-variant31-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:39,55:94:99:1357,0,892:19,20,31,24
chr2	170502415	.	T	C	763.49	PASS	AC=1;AF=0.5;AN=2;DP=180;MQ=60;set=variant17-variant41	GT:AD:DP:GQ:PL:SB	0/1:38,62:100:99:1567,0,928:20,18,37,25
chr2	170504672	.	CAAAAAAAAAAAAAAAA	CAAAAAAAAA,C,CAAAAAAAAAA,CAAAAAA,CAAAAAAA,CAAAAAAAAAAA,CAAAAA,CAAAAAAAA,CAAAAAAAAAAAAAA	512.87	PASS	AC=0,0,0,0,0,0,0,0,1;AF=0.069,0.293,0.052,0.052,0.052,0.052,0.017,0.052,0.017;AN=2;DP=764;set=variant2-variant3-variant4-variant5-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant40-variant41-variant42-variant43	GT:DP:GQ:SB	0/9:7:9:0,1,4,2
chr2	170504700	.	A	T	626.57	PASS	AC=1;AF=0.5;AN=2;DP=369;set=variant3-variant5-variant6-variant11-variant12-variant19-variant26-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:320,0,235:4,6,7,2
chr2	170505684	.	G	A	650.58	PASS	AC=2;AF=0.662;AN=2;DP=2016;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,50:50:99:1672,150,0:0,0,36,14
chr2	170531572	.	T	C	2608.14	PASS	AC=2;AF=0.662;AN=2;DP=6878;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,191:192:99:6240,532,0:0,1,53,138
chr2	170531614	.	A	G	939.16	PASS	AC=2;AF=0.662;AN=2;DP=3080;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:1,94:95:99:3343,244,0:1,0,19,75
chr2	170531679	.	A	AAT	82.68	PASS	AC=2;AF=0.696;AN=2;DP=258;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant22-variant24-variant25-variant28-variant29-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:405,27,0:0,0,1,8
chr2	170531695	.	T	C	94.73	PASS	AC=2;AF=0.685;AN=2;DP=163;FS=0;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant25-variant28-variant29-variant31-variant32-variant34-variant36-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:358,27,0:0,0,1,8
chr2	170550839	.	A	G	3016.38	PASS	AC=2;AF=0.662;AN=2;DP=8145;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,247:247:99:7558,740,0:0,0,121,126
chr2	170550956	.	A	C	1814.86	PASS	AC=2;AF=0.737;AN=2;DP=5300;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,120:120:99:4719,360,0:0,0,40,80
chr2	170550963	.	G	A	1807.72	PASS	AC=1;AF=0.5;AN=2;DP=1566;MQ=60;set=variant3-variant5-variant6-variant8-variant11-variant12-variant19-variant26-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:60,52:112:99:1514,0,1850:20,40,18,34
chr2	170551049	.	A	G	664.46	PASS	AC=1;AF=0.5;AN=2;DP=788;FractionInformativeReads=1;MQ=60;set=variant3-variant5-variant8-variant11-variant12-variant19-variant26-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:40,35:75:99:863,0,940:17,23,14,21
chr2	170551132	.	G	A	462.64	PASS	AC=1;AF=0.5;AN=2;DP=160;MQ=60;set=variant5-variant8-variant11-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,15:30:99:396,0,344:7,8,4,11
chr2	170557350	.	A	G	834.55	PASS	AC=2;AF=0.667;AN=2;DP=994;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,36:36:99:1359,108,0:0,0,31,5
chr2	170558231	.	T	C	1000.02	PASS	AC=1;AF=0.586;AN=2;DP=1359;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:19,18:37:99:411,0,460:9,10,6,12
chr2	170558293	.	AAAAAG	A	817.39	PASS	AC=1;AF=0.589;AN=2;DP=540;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant11-variant14-variant15-variant16-variant17-variant19-variant20-variant22-variant24-variant25-variant28-variant29-variant30-variant31-variant32-variant34-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:201,0,476:3,7,1,8
chr2	170590322	.	T	C	124.71	PASS	AC=2;AF=0.731;AN=2;DP=632;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:534,42,0:0,0,10,4
chr2	170590610	.	T	C	220.59	PASS	AC=2;AF=0.694;AN=2;DP=644;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant12-variant14-variant17-variant18-variant19-variant20-variant22-variant23-variant25-variant26-variant27-variant29-variant31-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,11:11:33:377,33,0:0,0,4,7
chr2	170592709	.	A	G	823.93	PASS	AC=1;AF=0.5;AN=2;DP=652;MQ=60;set=variant3-variant5-variant8-variant11-variant12-variant14-variant19-variant26-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:29,18:47:99:480,0,794:8,21,3,15
chr2	170597835	.	G	T	907.92	PASS	AC=1;AF=0.5;AN=2;DP=716;FractionInformativeReads=1;MQ=60;set=variant3-variant8-variant11-variant12-variant19-variant26-variant34-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:37,40:77:99:1087,0,1051:26,11,29,11
chr2	170605981	.	C	T	1642.08	PASS	AC=2;AF=1;AN=2;DP=3037;FS=0;MQ=60;MQRankSum=0.214;ReadPosRankSum=-1.421;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1794,165,0:0,0,38,17
chr2	170606293	.	T	TA	1266.38	PASS	AC=1;AF=0.5;AN=2;DP=829;MQ=60;set=variant8-variant11-variant12-variant19-variant26-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,27:71:99:609,0,1125:15,29,10,17
chr2	170606658	.	G	A	2665.21	PASS	AC=2;AF=0.86;AN=2;DP=2585;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,54:54:99:1814,160,0:0,0,37,17
chr2	170606724	.	A	G	6823.17	PASS	AC=2;AF=0.989;AN=2;DP=8441;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,160:160:99:4593,479,0:0,0,89,71
chr2	170606984	.	C	CA,CAA	1345.03	PASS	AC=0,1;AF=0.455,0.477;AN=2;DP=3514;set=variant-filterInvariant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:58:99:25,16,11,6
chr2	170607064	.	C	A	4652.86	PASS	AC=2;AF=0.919;AN=2;DP=7068;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4119,406,0:0,0,72,64
chr2	170607283	.	T	C	2437.14	PASS	AC=1;AF=0.5;AN=2;DP=1188;MQ=60;set=variant8-variant11-variant12-variant19-variant26-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:77,43:120:99:1234,0,2081:48,29,25,18
chr2	170607330	.	T	G	7478.58	PASS	AC=2;AF=0.907;AN=2;DP=8948;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,167:167:99:5594,501,0:0,0,104,63
chr2	170607704	.	T	C	1277.33	PASS	AC=1;AF=0.5;AN=2;DP=629;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant28-variant31-variant36-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,50:90:99:1362,0,1054:17,23,20,30
chr2	170607750	.	A	G	1474.71	PASS	AC=2;AF=0.64;AN=2;DP=2314;MQ=60;set=variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant21-variant24-variant26-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2529,238,0:0,0,36,44
chr2	170607826	.	C	T	2080.18	PASS	AC=1;AF=0.571;AN=2;DP=2325;MQ=60;set=variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant21-variant24-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:50,51:101:99:1546,0,1324:30,20,28,23
chr2	170607841	.	C	T	2505.56	PASS	AC=1;AF=0.571;AN=2;DP=2599;MQ=60;set=variant3-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant17-variant19-variant21-variant24-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:55,49:104:99:1521,0,1556:34,21,28,21
chr2	170608042	.	T	C	2965.05	PASS	AC=1;AF=0.575;AN=2;DP=3063;MQ=60;set=variant3-variant5-variant6-variant9-variant11-variant12-variant15-variant17-variant19-variant21-variant24-variant28-variant30-variant31-variant32-variant36-variant37-variant38-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:72,52:124:99:1438,0,2007:27,45,26,26
chr2	170629766	.	A	C	224.84	PASS	AC=1;AF=0.5;AN=2;DP=247;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant11-variant12-variant19-variant26-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:5,21:26:99:621,0,105:4,1,16,5
chr2	170632960	.	C	CA	2772.33	PASS	AC=1;AF=0.75;AN=2;DP=2307;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:34,16:50:99:611,0,1377:19,15,10,6
chr2	170632969	.	C	A	2935.79	PASS	AC=1;AF=0.75;AN=2;DP=2421;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,18:55:99:635,0,1449:21,16,12,6
chr2	170633001	.	C	T	666.42	PASS	AC=1;AF=0.5;AN=2;DP=522;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant8-variant11-variant19-variant26-variant41	GT:AD:DP:GQ:PL:SB	0/1:46,24:70:99:612,0,983:21,25,16,8
chr2	170633023	.	T	TA	2897.82	PASS	AC=1;AF=0.75;AN=2;DP=2763;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:48,27:75:99:788,0,1550:22,26,17,10
chr2	170633067	.	G	T	2179.91	PASS	AC=1;AF=0.75;AN=2;DP=2629;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:40,34:74:99:844,0,992:19,21,19,15
chr2	170633103	.	GA	G	2383.61	PASS	AC=1;AF=0.955;AN=2;DP=3043;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:34,40:74:99:1262,0,1048:17,17,21,19
chr2	170633291	.	T	C	9107.25	PASS	AC=1;AF=0.75;AN=2;DP=7401;MQ=60;set=variant-variant2-variant3-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant24-variant25-variant26-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:105,88:193:99:2510,0,2979:69,36,57,31
chr2	170668106	.	G	A	561.67	PASS	AC=1;AF=0.85;AN=2;DP=614;FractionInformativeReads=1;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,6:11:99:156,0,196:4,1,4,2
chr2	170668813	.	C	T	2449.74	PASS	AC=1;AF=0.788;AN=2;DP=1704;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,17:36:99:582,0,701:8,11,8,9
chr2	170676227	.	T	C	182.14	PASS	AC=1;AF=0.86;AN=2;DP=609;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,8:16:99:228,0,192:3,5,2,6
chr2	170677837	.	AC	A	305.89	PASS	AC=1;AF=0.5;AN=2;DP=344;MQ=60;set=variant-variant4-variant10-variant12-variant14-filterInvariant19-variant20-variant21-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,18:40:99:544,0,728:8,14,7,11
chr2	170677855	.	G	GT	830.68	PASS	AC=1;AF=0.788;AN=2;DP=946;MQ=60;set=variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,12:22:99:271,0,217:3,7,4,8
chr2	170684224	.	C	T	676.15	PASS	AC=1;AF=0.756;AN=2;DP=1580;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:7,10:17:99:309,0,175:4,3,7,3
chr2	170762487	.	C	T	1864.93	PASS	AC=2;AF=1;AN=2;DP=2244;FS=0;MQ=60;MQRankSum=-0.675;ReadPosRankSum=-1.674;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1384,123,0:0,0,30,11
chr2	170762566	.	A	T	1186.63	PASS	AC=1;AF=0.5;AN=2;DP=1258;MQ=60;set=variant-variant12-variant14-variant19-variant20-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,55:114:99:1252,0,1556:40,19,30,25
chr2	170782037	.	C	T	103.54	PASS	AC=2;AF=1;AN=2;DP=377;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.044;ReadPosRankSum=0.696;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,6:6:18:270,18,0:0,0,6,0
chr2	170782338	.	C	T	169.68	PASS	AC=1;AF=0.756;AN=2;DP=632;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,12:17:99:413,0,168:0,5,2,10
chr2	170784004	.	T	C	236.96	PASS	AC=1;AF=0.5;AN=2;DP=256;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant12-variant14-variant19-variant20-variant21-variant28-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,7:12:99:198,0,148:1,4,1,6
chr2	170784049	.	G	A	104.76	PASS	AC=2;AF=0.971;AN=2;DP=206;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant31-variant32-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,3:3:9:122,9,0:0,0,0,3
chr2	170785484	.	G	A	222.03	PASS	AC=1;AF=0.5;AN=2;DP=303;MQ=60;set=variant-variant2-variant4-variant5-variant12-variant14-variant19-variant20-variant21-variant28-variant35-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:13,9:22:99:265,0,381:5,8,1,8
chr2	170821010	.	A	G	886.1	PASS	AC=1;AF=0.5;AN=2;DP=914;MQ=60;set=variant-variant12-variant14-variant19-variant20-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,44:95:99:1051,0,1064:26,25,21,23
chr2	170850738	.	T	C	887.83	PASS	AC=2;AF=1;AN=2;DP=1023;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,22:22:66:903,66,0:0,0,21,1
chr2	170870595	.	T	C	656.61	PASS	AC=1;AF=0.697;AN=2;DP=1957;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,31:60:99:889,0,777:10,19,8,23
chr2	170871950	.	T	G	438.16	PASS	AC=1;AF=0.5;AN=2;DP=258;FractionInformativeReads=1;MQ=60;set=variant-variant12-variant14-variant19-variant20-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:9,8:17:99:220,0,285:1,8,3,5
chr2	170871976	.	A	G	634.76	PASS	AC=2;AF=0.788;AN=2;DP=577;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:402,27,0:0,0,0,9
chr2	170911950	.	T	C	676.73	PASS	AC=1;AF=0.5;AN=2;DP=419;FractionInformativeReads=1;MQ=60;set=variant-variant12-variant14-variant19-variant20-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,28:46:99:713,0,469:12,6,17,11
chr2	170917648	.	A	G	1370.09	PASS	AC=1;AF=0.5;AN=2;DP=1415;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant12-variant14-variant19-variant20-variant21-variant28-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:37,18:55:99:389,0,944:21,16,11,7
chr2	170917983	.	CTT	CT,C	1349.95	PASS	AC=2,0;AF=0.773,0.148;AN=2;DP=2724;set=Intersection	GT:DP:GQ:SB	1/1:44:29:2,2,11,29
chr2	170929880	.	G	A	665.8	PASS	AC=1;AF=0.5;AN=2;DP=712;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant4-variant5-variant12-variant14-variant19-variant20-variant21-variant28-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,27:56:99:713,0,768:20,9,19,8
chr2	170938659	.	G	A	13930.2	PASS	AC=2;AF=0.841;AN=2;DP=16082;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,386:386:99:11868,1154,0:0,0,207,179
chr2	170939135	.	G	A	13074.6	PASS	AC=2;AF=1;AN=2;DP=16128;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,326:326:99:10219,977,0:0,0,170,156
chr2	170939368	.	G	A	2298.92	PASS	AC=1;AF=0.528;AN=2;DP=2011;MQ=60;set=variant-variant2-variant4-variant5-variant12-variant13-variant14-variant18-variant19-variant20-variant21-variant28-variant35-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:42,56:98:99:1877,0,1339:20,22,30,26
chr2	170939679	.	T	C	1041.14	PASS	AC=1;AF=0.5;AN=2;DP=1201;MQ=60;set=variant-variant2-variant4-variant5-variant12-variant14-variant19-variant20-variant21-variant28-variant35-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,18:59:99:438,0,1161:20,21,9,9
chr2	170939692	.	T	TATA,TATAAAAATA	3822.5	PASS	AC=1,1;AF=0.709,0.174;AN=2;DP=3746;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/2:58:99:0,0,31,27
chr2	171056569	.	T	A	369.76	PASS	AC=1;AF=0.583;AN=2;DP=236;FractionInformativeReads=1;MQ=60;set=variant4-variant5-variant6-variant7-variant9-variant11-variant12-variant17-variant18-variant20-variant21-variant23-variant24-variant25-variant27-variant28-variant29-variant31-variant32-variant33-variant35-variant36-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:10,3:13:86:86,0,358:9,1,3,0
chr2	171070810	.	G	T	1725.45	PASS	AC=2;AF=0.667;AN=2;DP=2744;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant10-variant11-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,64:64:99:2164,192,0:0,0,44,20
chr2	171071369	.	C	T	1519.97	PASS	AC=2;AF=0.857;AN=2;DP=4955;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,128:128:99:4195,384,0:0,0,41,87
chr2	171074008	.	G	C	440.06	PASS	AC=1;AF=0.587;AN=2;DP=1034;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant7-variant8-variant10-variant11-variant14-variant15-variant21-variant22-variant26-variant27-variant28-variant30-variant31-variant33-variant34-variant38-variant39-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:22,25:47:99:766,0,728:3,19,5,20
chr2	171092445	.	A	G	164.67	PASS	AC=2;AF=0.811;AN=2;DP=633;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant26-variant28-variant31-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:1030,75,0:0,0,23,2
chr2	171092794	.	T	G	82.07	PASS	AC=1;AF=0.5;AN=2;DP=600;MQ=60;set=variant-filterInvariant2-variant4-filterInvariant5-variant7-filterInvariant8-variant10-variant11-variant13-filterInvariant16-variant20-filterInvariant24-filterInvariant32-variant34-variant38-variant41	GT:AD:DP:GQ:PL:SB	0/1:22,13:35:99:111,0,1039:18,4,0,13
chr2	171192084	.	G	A	1960.45	PASS	AC=1;AF=0.692;AN=2;DP=1926;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant18-variant19-variant20-variant22-variant23-variant24-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,22:45:99:622,0,695:6,17,6,16
chr2	171256597	.	A	C	641.9	PASS	AC=1;AF=0.671;AN=2;DP=1368;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:281,0,405:12,0,8,4
chr2	171256912	.	CT	C,CTTT,CTT	44.77	PASS	AC=0,1,0;AF=0.367,0.1,0.033;AN=2;DP=786;set=filterInvariant8-filterInvariant9-variant14-variant15-variant20-variant21-filterInvariant22-variant29-variant32-filterInvariant35-variant36-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	0/2:24:99:3,10,2,9
chr2	171260693	.	A	C	748.24	PASS	AC=1;AF=0.5;AN=2;DP=51;FS=4.743;FractionInformativeReads=1;MQ=60;MQRankSum=0.161;QD=14.67;ReadPosRankSum=0.047;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,28:51:99:776,0,667:19,4,19,9
chr2	171260708	.	C	A	1720.01	PASS	AC=2;AF=0.93;AN=2;DP=2646;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,66:66:99:2159,198,0:0,0,46,20
chr2	171260787	.	G	A	4571.33	PASS	AC=2;AF=0.93;AN=2;DP=5368;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:4707,462,0:0,0,88,66
chr2	171260820	.	T	C	3589.02	PASS	AC=2;AF=0.93;AN=2;DP=5882;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,162:162:99:5023,485,0:0,0,89,73
chr2	171261021	.	T	G	1685.68	PASS	AC=2;AF=0.966;AN=2;DP=2463;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,59:59:99:1956,176,0:0,0,15,44
chr2	171264091	.	T	TGCTCTGGATATGAAA,TGCTCTGGATATGAAAGCTCTGGATATGAAA	501.75	PASS	AC=2,0;AF=0.849,0.058;AN=2;DP=746;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	1/1:13:57:0,0,10,3
chr2	171355198	.	A	G	4668.23	PASS	AC=1;AF=0.989;AN=2;DP=6093;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:64,72:136:99:1818,0,1673:35,29,33,39
chr2	171355329	.	G	C	4827.36	PASS	AC=1;AF=0.977;AN=2;DP=5461;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:56,57:113:99:1467,0,1492:22,34,26,31
chr2	171355426	.	T	C	2368.08	PASS	AC=1;AF=0.977;AN=2;DP=2298;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:19,29:48:99:784,0,615:2,17,9,20
chr2	171356051	.	TTATTTA	T	205.64	PASS	AC=1;AF=0.586;AN=2;DP=331;MQ=60;set=variant-variant3-variant5-variant7-variant8-variant9-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant23-variant24-variant27-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:1,5:6:66:207,0,66:1,0,5,0
chr2	171356274	.	G	A	2363.17	PASS	AC=1;AF=0.977;AN=2;DP=5150;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:53,66:119:99:1600,0,1261:27,26,34,32
chr2	171356423	.	T	C	309.19	PASS	AC=1;AF=0.75;AN=2;DP=585;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant35-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,12:26:99:393,0,394:3,11,1,11
chr2	171356492	.	C	G	246.22	PASS	AC=1;AF=0.962;AN=2;DP=262;MQ=60;set=variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:5,3:8:70:70,0,180:0,5,1,2
chr2	171358044	.	G	A	733.42	PASS	AC=1;AF=0.732;AN=2;DP=914;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,19:31:99:510,0,326:8,4,13,6
chr2	171358211	.	G	A	2373.01	PASS	AC=1;AF=0.977;AN=2;DP=3567;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:32,51:83:99:1239,0,782:18,14,25,26
chr2	171358474	.	T	A	376.82	PASS	AC=1;AF=0.966;AN=2;DP=521;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:6,10:16:99:314,0,184:1,5,2,8
chr2	171503239	.	G	T	156.12	PASS	AC=1;AF=0.5;AN=2;DP=13;FS=2.522;FractionInformativeReads=1;MQ=60;MQRankSum=1.493;QD=12.01;ReadPosRankSum=1.656;SOR=0.204;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:7,6:13:99:184,0,236:6,1,4,2
chr2	171503330	.	C	T	1627.86	PASS	AC=1;AF=0.536;AN=2;DP=1196;FractionInformativeReads=1;MQ=60;set=variant-variant4-variant6-variant9-variant22-variant24-variant27-variant28-variant32-variant33-variant38-variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:30,36:66:99:820,0,614:17,13,19,17
chr2	171508262	.	G	A	1265.77	PASS	AC=2;AF=0.615;AN=2;DP=2944;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant14-variant15-variant17-variant18-variant22-variant24-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,105:105:99:3373,314,0:0,0,42,63
chr2	171508490	.	CA	C	941.01	PASS	AC=2;AF=0.989;AN=2;DP=1248;FS=0;MQRankSum=-1.493;ReadPosRankSum=-0.205;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,25:25:75:750,75,0:0,0,19,6
chr2	171509439	.	T	C	492.9	PASS	AC=1;AF=0.5;AN=2;DP=33;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.633;QD=14.94;ReadPosRankSum=-2.151;SOR=0.963;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,18:33:99:521,0,401:10,5,13,5
chr2	171509700	.	G	A	922.52	PASS	AC=2;AF=0.538;AN=2;DP=1189;MQ=60;set=variant3-variant9-variant10-variant14-variant17-variant18-variant35-variant36-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	1/1:0,69:69:99:2192,207,0:0,0,36,33
chr2	171510801	.	C	A	2176.29	PASS	AC=1;AF=0.5;AN=2;DP=268;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:59,64:123:99:1685,0,1605:17,42,21,43
chr2	171627676	.	T	G	2431.54	PASS	AC=2;AF=1;AN=2;DP=6198;FS=0;MQ=60;MQRankSum=0.619;ReadPosRankSum=0.297;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3344,361,0:0,0,63,58
chr2	171632385	.	C	CTT	3517.2	PASS	AC=1;AF=0.989;AN=2;DP=2778;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:43,27:70:99:988,0,1924:20,23,13,14
chr2	171654663	.	A	C	1543.29	PASS	AC=1;AF=0.81;AN=2;DP=1641;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,15:36:99:364,0,608:5,16,5,10
chr2	171675381	.	A	G	142.67	PASS	AC=1;AF=0.85;AN=2;DP=534;FractionInformativeReads=1;MQ=60;set=variant2-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,6:10:93:217,0,93:1,3,2,4
chr2	171678379	.	C	T	348.03	PASS	AC=1;AF=0.837;AN=2;DP=1122;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:15,16:31:99:501,0,533:14,1,13,3
chr2	171678625	.	T	C	1076.91	PASS	AC=1;AF=0.671;AN=2;DP=5029;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:58,52:110:99:1341,0,1466:25,33,22,30
chr2	171715387	.	G	A	1255.22	PASS	AC=1;AF=0.5;AN=2;DP=96;FS=5.159;FractionInformativeReads=1;MQ=60;MQRankSum=-1.672;QD=13.08;ReadPosRankSum=1.606;SOR=0.994;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:43,53:96:99:1283,0,925:23,20,22,31
chr2	171716120	.	A	G	454.33	PASS	AC=1;AF=0.5;AN=2;DP=25;FS=1.734;FractionInformativeReads=1;MQ=60;MQRankSum=-0.991;QD=18.17;ReadPosRankSum=0.991;SOR=1.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:9,16:25:99:483,0,165:5,4,11,5
chr2	171716803	.	G	A	1893.43	PASS	AC=2;AF=0.898;AN=2;DP=3169;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2756,240,0:0,0,39,41
chr2	171786169	.	A	G	561.75	PASS	AC=1;AF=0.909;AN=2;DP=1027;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:290,0,132:3,3,8,1
chr2	171786282	.	G	A	907.66	PASS	AC=1;AF=0.5;AN=2;DP=62;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.674;QD=14.64;ReadPosRankSum=-0.502;SOR=0.634;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:25,37:62:99:936,0,531:16,9,23,14
chr2	171806123	.	C	T	1301.28	PASS	AC=1;AF=0.5;AN=2;DP=101;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.015;QD=12.88;ReadPosRankSum=-2.333;SOR=0.743;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:51,50:101:99:1330,0,1409:31,20,31,19
chr2	171806623	.	A	T	119.48	PASS	AC=1;AF=0.5;AN=2;DP=8;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.922;QD=14.93;ReadPosRankSum=-0.421;SOR=1.981;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:4,4:8:99:148,0,117:3,1,4,0
chr2	171818289	.	G	A	3321.87	PASS	AC=2;AF=1;AN=2;DP=4387;FS=0;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2754,251,0:0,0,30,54
chr2	171822466	.	C	T,G	3471.2	PASS	AC=1,0;AF=0.875,0.011;AN=2;DP=9096;MQ=60;set=Intersection	GT:DP:GQ:SB	0/1:221:99:58,57,55,51
chr2	171847275	.	G	A	785.65	PASS	AC=1;AF=0.613;AN=2;DP=1282;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:575,0,738:19,1,16,0
chr2	171847387	.	AAT	A	6907.53	PASS	AC=1;AF=0.613;AN=2;DP=9328;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:130,152:282:99:5872,0,4844:76,54,96,56
chr2	171847515	.	TA	T,TAA	7749.21	PASS	AC=1,0;AF=0.682,0.03;AN=2;DP=10806;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant33-variant34-variant35-variant38-variant40-variant41-variant42	GT:DP:GQ:SB	0/1:270:99:50,65,67,88
chr2	171847517	.	A	T	2722.07	PASS	AC=1;AF=0.613;AN=2;DP=9736;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:137,147:284:99:2770,0,5952:63,74,65,82
chr2	171847832	.	G	C	3544.67	PASS	AC=1;AF=0.613;AN=2;DP=8873;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant30-variant32-variant34-variant35-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:131,117:248:99:3003,0,3779:68,63,67,50
chr2	171850178	.	TAAAAA	TAAAAAAA,TAAAAAA,TAAAAAAAA,TA,T,TAA,TAAA	266.77	PASS	AC=0,0,0,0,2,0,0;AF=0.203,0.078,0.016,0.094,0.094,0.172,0.031;AN=2;DP=945;set=variant-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant12-variant13-variant14-variant15-variant16-variant18-variant20-variant21-filterInvariant23-variant24-variant26-variant27-variant28-variant29-variant30-variant32-variant34-variant35-variant36-variant37-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	5/5:11:2:2,0,4,5
chr2	171853359	.	G	A	242.63	PASS	AC=1;AF=0.5;AN=2;DP=151;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant9-variant20-variant21-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:199,0,321:3,8,1,6
chr2	171862578	.	T	TA	424.61	PASS	AC=1;AF=0.5;AN=2;DP=288;MQ=60;set=variant5-variant6-variant7-variant9-variant20-variant21-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:17,14:31:99:236,0,366:8,9,9,5
chr2	171862954	.	TAAAA	T	1576	PASS	AC=1;AF=0.5;AN=2;DP=638;MQ=60;set=variant5-variant6-variant7-variant9-variant20-variant21-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:35,26:61:99:961,0,1982:23,12,16,10
chr2	171910256	.	T	C	720.79	PASS	AC=1;AF=0.5;AN=2;DP=588;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant7-variant9-variant20-variant21-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,31:65:99:713,0,890:17,17,15,16
chr2	171916425	.	G	C	208.61	PASS	AC=1;AF=0.5;AN=2;DP=51;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:13,16:29:99:421,0,364:10,3,9,7
chr2	171916664	.	A	T	260.05	PASS	AC=2;AF=1;AN=2;DP=1257;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:570,54,0:0,0,4,14
chr2	171938279	.	G	GT	973.8	PASS	AC=1;AF=0.5;AN=2;DP=883;MQ=60;set=variant5-variant6-variant7-variant9-variant20-variant21-variant30-variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:41,45:86:99:1420,0,1259:17,24,15,30
chr2	171974573	.	G	C	490.18	PASS	AC=1;AF=0.5;AN=2;DP=58;FractionInformativeReads=1;MQ=60;set=variant10-variant41	GT:AD:DP:GQ:PL:SB	0/1:8,17:25:99:386,0,161:4,4,7,10
chr2	172087639	.	A	T	441.49	PASS	AC=1;AF=0.625;AN=2;DP=63;FractionInformativeReads=1;MQ=60;set=variant10-variant34-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:4,7:11:99:220,0,104:3,1,6,1
chr2	172180771	.	A	G	3975.95	PASS	AC=2;AF=1;AN=2;DP=4389;FS=0;MQRankSum=1.64;ReadPosRankSum=1.409;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,106:106:99:3027,317,0:0,0,60,46
chr2	172180831	.	T	C	1448.95	PASS	AC=1;AF=0.5;AN=2;DP=112;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.401;QD=12.94;ReadPosRankSum=1.776;SOR=0.683;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:50,62:112:99:1477,0,1293:20,30,25,37
chr2	172188320	.	G	A	564.36	PASS	AC=1;AF=0.5;AN=2;DP=45;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.811;QD=12.54;ReadPosRankSum=1.862;SOR=0.735;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:20,25:45:99:593,0,386:9,11,11,14
chr2	172188338	.	A	C	291.74	PASS	AC=1;AF=0.5;AN=2;DP=40;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.137;QD=7.29;ReadPosRankSum=0.109;SOR=0.773;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,17:40:99:320,0,583:10,13,7,10
chr2	172193808	.	T	C	56.77	PASS	AC=2;AF=0.682;AN=2;DP=426;MQ=60;set=variant6-variant8-variant9-variant12-variant13-variant14-variant16-variant17-variant18-variant21-variant23-variant24-variant26-variant28-variant29-variant33-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,17:17:51:571,51,0:0,0,10,7
chr2	172216969	.	T	C	1003.5	PASS	AC=1;AF=0.659;AN=2;DP=931;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant9-variant13-variant14-variant16-variant17-variant18-variant21-variant23-variant24-variant26-variant28-variant29-variant33-variant36-variant37-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,21:42:99:616,0,562:7,14,8,13
chr2	172290497	.	G	A	1531.76	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=0.636;FractionInformativeReads=1;MQ=60;MQRankSum=-0.588;QD=11.35;ReadPosRankSum=-0.125;SOR=0.614;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:69,66:135:99:1560,0,1646:37,32,34,32
chr2	172291616	.	C	T	778.96	PASS	AC=1;AF=0.615;AN=2;DP=905;MQ=60;set=variant8-variant10-variant11-variant15-variant17-variant21-variant27-variant30-variant31-variant34-variant35-variant37-variant41	GT:AD:DP:GQ:PL:SB	0/1:40,33:73:99:818,0,1030:24,16,21,12
chr2	172325498	.	G	A	494.33	PASS	AC=1;AF=0.5;AN=2;DP=63;FS=1.056;FractionInformativeReads=1;MQ=60;MQRankSum=0.656;QD=7.85;ReadPosRankSum=0.382;SOR=0.997;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:41,22:63:99:523,0,1098:16,25,7,15
chr2	172339964	.	C	T	2261.41	PASS	AC=2;AF=1;AN=2;DP=2964;FS=0;MQ=60;MQRankSum=1.299;ReadPosRankSum=1.245;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,72:72:99:2495,215,0:0,0,38,34
chr2	172340097	.	G	A	1801.84	PASS	AC=1;AF=0.5;AN=2;DP=154;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.186;QD=11.7;ReadPosRankSum=-0.197;SOR=0.693;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:76,78:154:99:1830,0,1807:38,38,39,39
chr2	172378657	.	T	G	751.78	PASS	AC=1;AF=0.5;AN=2;DP=1039;MQ=60;set=variant6-variant17-variant18-variant21-variant23-variant24-variant26-variant28-variant34-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,42:93:99:1022,0,1140:30,21,24,18
chr2	172378818	.	A	G	3230.33	PASS	AC=2;AF=0.734;AN=2;DP=3173;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,84:84:99:2605,252,0:0,0,38,46
chr2	172378889	.	C	G	2762.29	PASS	AC=2;AF=0.734;AN=2;DP=1900;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1528,123,0:0,0,15,26
chr2	172378893	.	G	A	2713.04	PASS	AC=1;AF=0.607;AN=2;DP=1647;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant13-variant14-variant16-variant18-variant22-variant24-variant25-variant26-variant27-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:20,16:36:99:467,0,572:7,13,5,11
chr2	172379686	.	G	A	3220.8	PASS	AC=2;AF=0.734;AN=2;DP=3610;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,121:121:99:3671,362,0:0,0,68,53
chr2	172379781	.	G	A	4366.89	PASS	AC=2;AF=0.719;AN=2;DP=4931;MQ=60;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:2,135:137:99:3830,333,0:2,0,70,65
chr2	172379812	.	C	A	1367.39	PASS	AC=1;AF=0.5;AN=2;DP=135;FS=2.199;FractionInformativeReads=0.993;MQ=60;MQRankSum=1.646;QD=10.13;ReadPosRankSum=0.824;SOR=0.914;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:76,58:134:99:1396,0,1842:38,38,26,32
chr2	172379936	.	G	A	1920.61	PASS	AC=2;AF=0.703;AN=2;DP=1736;set=variant-variant2-variant3-variant5-variant6-variant9-variant10-variant13-variant14-variant16-variant17-variant18-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant32-variant33-variant34-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:1740,163,0:0,0,20,35
chr2	172380073	.	G	A	130.48	PASS	AC=1;AF=0.5;AN=2;DP=6;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.72;QD=21.75;ReadPosRankSum=0.72;SOR=1.329;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:69:159,0,69:0,2,0,4
chr2	172398311	.	T	C	2151.12	PASS	AC=2;AF=0.816;AN=2;DP=1800;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,48:48:99:1514,143,0:0,0,16,32
chr2	172411002	.	G	C	234.58	PASS	AC=1;AF=0.5;AN=2;DP=67;FS=0;FractionInformativeReads=1;MQ=60;set=variant34-variant41	GT:AD:DP:GQ:PL:SB	0/1:11,22:33:99:624,0,265:8,3,15,7
chr2	172411273	.	G	A	766.72	PASS	AC=2;AF=0.743;AN=2;DP=2671;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,71:71:99:2614,213,0:0,0,27,44
chr2	172411737	.	C	A	604.7	PASS	AC=2;AF=0.743;AN=2;DP=1500;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,35:35:99:1251,104,0:0,0,7,28
chr2	172412510	.	T	C	62.92	PASS	AC=2;AF=0.735;AN=2;DP=1097;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:925,93,0:0,0,15,16
chr2	172412616	.	C	A	234.67	PASS	AC=1;AF=0.614;AN=2;DP=559;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant14-variant16-variant18-variant21-variant24-variant27-variant28-variant29-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,12:24:99:347,0,313:6,6,4,8
chr2	172412835	.	G	A	2299.2	PASS	AC=1;AF=0.614;AN=2;DP=3079;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant14-variant16-variant18-variant21-variant24-variant27-variant28-variant29-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:100,68:168:99:2498,0,5574:62,38,47,21
chr2	172412836	.	CT	C	2290.2	PASS	AC=1;AF=0.614;AN=2;DP=3140;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant14-variant16-variant18-variant21-variant24-variant27-variant28-variant29-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:101,68:169:99:2498,0,5574:62,39,47,21
chr2	172413018	.	A	G	3673.9	PASS	AC=2;AF=0.743;AN=2;DP=11063;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,251:251:99:8032,752,0:0,0,107,144
chr2	172413267	.	G	C	868.49	PASS	AC=2;AF=0.63;AN=2;DP=1127;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant14-variant16-variant18-variant21-variant24-variant27-variant28-variant29-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1628,135,0:0,0,16,29
chr2	172414462	.	G	A	1159.08	PASS	AC=2;AF=0.735;AN=2;DP=2567;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant9-variant10-variant12-variant13-variant14-variant16-variant18-variant19-variant20-variant21-variant22-variant24-variant25-variant27-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2657,246,0:0,0,31,51
chr2	172414672	.	G	A	453	PASS	AC=2;AF=0.636;AN=2;DP=527;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant6-variant9-variant10-variant14-variant16-variant18-variant21-variant24-variant27-variant28-variant29-variant33-variant36-variant37-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:502,48,0:0,0,5,11
chr2	172563922	.	G	A	584.18	PASS	AC=2;AF=0.62;AN=2;DP=1289;MQ=60;set=variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant20-variant24-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1471,135,0:0,0,14,31
chr2	172564021	.	A	T	226.62	PASS	AC=2;AF=0.636;AN=2;DP=257;FractionInformativeReads=1;MQ=60;set=variant5-variant6-variant9-variant10-variant12-variant15-variant16-variant17-variant20-variant24-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,10:10:30:386,30,0:0,0,1,9
chr2	172569134	.	AT	A	240.98	PASS	AC=2;AF=0.636;AN=2;DP=233;MQ=60;set=variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant20-variant24-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,8:8:24:223,24,0:0,0,7,1
chr2	172582111	.	T	TG	334.76	PASS	AC=2;AF=0.688;AN=2;DP=136;set=variant5-variant9-variant10-variant11-variant16-variant17-variant20-variant24-variant25-variant29-variant32-variant33-variant35-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,9:9:27:310,27,0:0,0,8,1
chr2	172582281	.	A	ATTAC	1824.97	PASS	AC=2;AF=0.989;AN=2;DP=2165;FS=0;MQ=60;MQRankSum=-0.512;ReadPosRankSum=-1.37;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,39:39:99:1744,120,0:0,0,19,20
chr2	172641045	.	C	G	1449.89	PASS	AC=2;AF=0.62;AN=2;DP=3982;MQ=60;set=variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant20-variant24-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,141:141:99:4745,422,0:0,0,67,74
chr2	172644229	.	T	C	1744.74	PASS	AC=2;AF=0.886;AN=2;DP=4273;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,91:91:99:3047,273,0:0,0,44,47
chr2	172650382	.	G	A	259.12	PASS	AC=2;AF=0.62;AN=2;DP=648;FractionInformativeReads=1;MQ=60;set=variant2-variant5-variant6-variant9-variant10-variant11-variant12-variant15-variant16-variant17-variant20-variant24-variant25-variant28-variant29-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:810,72,0:0,0,7,17
chr2	172709215	.	G	C	1406.01	PASS	AC=2;AF=0.886;AN=2;DP=1756;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,34:34:99:969,102,0:0,0,16,18
chr2	172712480	.	T	C	943.83	PASS	AC=2;AF=0.884;AN=2;DP=1494;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,31:31:93:1049,93,0:0,0,11,20
chr2	172725301	.	A	G	5630.04	PASS	AC=2;AF=0.886;AN=2;DP=7151;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,157:157:99:4783,471,0:0,0,64,93
chr2	172928655	.	C	G	540.25	PASS	AC=1;AF=0.5;AN=2;DP=38;FS=1.342;FractionInformativeReads=1;MQ=60;MQRankSum=0.921;QD=14.22;ReadPosRankSum=-1.564;SOR=1.112;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:18,20:38:99:568,0,406:7,11,6,14
chr2	172942757	.	A	G	53.06	PASS	AC=1;AF=0.5;AN=2;DP=21;FS=13.457;FractionInformativeReads=1;MQ=60;MQRankSum=0.537;QD=2.53;ReadPosRankSum=-0.041;SOR=3.601;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:16,5:21:81:81,0,367:9,7,0,5
chr2	172945529	.	G	A	1447.58	PASS	AC=2;AF=0.869;AN=2;DP=2140;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,56:56:99:1718,165,0:0,0,31,25
chr2	172946315	.	T	G	1889.66	PASS	AC=2;AF=0.869;AN=2;DP=3099;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,68:68:99:2106,204,0:0,0,36,32
chr2	172946527	.	T	C	739.43	PASS	AC=2;AF=0.552;AN=2;DP=1434;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant9-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant26-variant27-variant28-variant29-variant31-variant32-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1595,156,0:0,0,27,25
chr2	172950072	.	T	C	3360.92	PASS	AC=2;AF=1;AN=2;DP=2715;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2768,187,0:0,0,38,24
chr2	172950073	.	A	T	3360.92	PASS	AC=2;AF=0.878;AN=2;DP=2527;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,62:62:99:2768,187,0:0,0,38,24
chr2	172953438	.	G	A	836.45	PASS	AC=2;AF=0.692;AN=2;DP=1293;MQ=60;set=variant-variant2-variant7-variant9-variant10-variant11-variant13-variant14-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1742,123,0:0,0,21,20
chr2	172953460	.	G	A	841.54	PASS	AC=2;AF=0.692;AN=2;DP=1219;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant7-variant9-variant10-variant11-variant13-variant14-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,41:41:99:1789,126,0:0,0,20,21
chr2	172954441	.	G	T	3658.12	PASS	AC=2;AF=0.716;AN=2;DP=3804;MQ=60;set=variant-variant2-variant4-variant5-variant6-variant7-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant29-variant30-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,93:93:99:2958,279,0:0,0,38,55
chr2	172964638	.	C	A	1386.67	PASS	AC=2;AF=0.989;AN=2;DP=1689;MQRankSum=0.515;ReadPosRankSum=0.018;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,46:46:99:1590,138,0:0,0,18,28
chr2	172967302	.	C	T	3021.75	PASS	AC=1;AF=0.672;AN=2;DP=3022;set=variant-variant2-variant3-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant16-variant17-variant20-variant21-variant22-variant24-variant25-variant26-variant30-variant32-variant33-variant35-variant36-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:46,42:88:99:856,0,1105:22,24,16,26
chr2	172967746	.	A	G	346.04	PASS	AC=1;AF=0.525;AN=2;DP=876;MQ=60;set=variant2-variant4-variant5-variant6-variant7-variant11-variant15-variant17-variant19-variant23-variant27-variant29-variant34-variant37-variant38-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:19,28:47:99:702,0,407:7,12,10,18
chr2	173292709	.	A	G	9366.44	PASS	AC=2;AF=0.565;AN=2;DP=4945;MQ=60;set=variant2-variant4-variant10-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant32-variant34-variant35-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,159:159:99:6970,481,0:0,0,52,107
chr2	173292713	.	C	T	9204.21	PASS	AC=2;AF=0.568;AN=2;DP=4429;MQ=60;set=variant2-variant4-variant10-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant29-variant32-variant34-variant35-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,154:154:99:6810,466,0:0,0,47,107
chr2	173292728	.	T	C	4876.76	PASS	AC=2;AF=0.565;AN=2;DP=3776;MQ=60;set=variant2-variant4-variant10-variant11-variant13-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant24-variant26-variant27-variant29-variant32-variant34-variant35-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4257,387,0:0,0,35,94
chr2	173329965	.	T	A	94.73	PASS	AC=1;AF=0.6;AN=2;DP=97;FractionInformativeReads=1;MQ=60;set=variant2-variant4-variant5-variant7-variant10-variant17-variant18-variant21-variant22-variant24-variant25-variant27-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,4:6:69:154,0,69:2,0,4,0
chr2	173330497	.	T	C	639.88	PASS	AC=1;AF=0.5;AN=2;DP=36;FS=3.65;FractionInformativeReads=1;MQ=60;MQRankSum=0.016;QD=17.77;ReadPosRankSum=1.412;SOR=0.193;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:14,22:36:99:668,0,394:2,12,7,15
chr2	173330549	.	T	G	344.82	PASS	AC=1;AF=0.5;AN=2;DP=119;FractionInformativeReads=1;MQ=60;set=variant6-variant8-variant13-variant15-variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:7,12:19:99:427,0,206:1,6,1,11
chr2	173332115	.	G	A	2173.02	PASS	AC=1;AF=0.5;AN=2;DP=3974;MQ=60;set=variant2-variant5-variant6-variant7-variant10-variant13-variant14-variant15-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant32-variant35-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:89,80:169:99:1927,0,2173:54,35,46,34
chr2	173334161	.	T	TATGATTTAGTACC	157.93	PASS	AC=1;AF=0.529;AN=2;DP=196;MQ=60;set=variant5-variant6-variant7-variant10-variant13-variant14-variant15-variant17-variant21-variant22-variant24-variant32-variant35-variant38-variant40-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:8,6:14:99:227,0,1151:0,8,1,5
chr2	173337495	.	C	T	1941.5	PASS	AC=1;AF=0.5;AN=2;DP=852;FractionInformativeReads=1;MQ=60;set=variant19-variant22-variant27-variant32-variant35-variant41	GT:AD:DP:GQ:PL:SB	0/1:52,61:113:99:1680,0,1389:34,18,40,21
chr2	173337681	.	G	T	1033.97	PASS	AC=1;AF=0.5;AN=2;DP=189;MQ=60;set=variant27-variant41	GT:AD:DP:GQ:PL:SB	0/1:53,35:88:99:642,0,1338:21,32,11,24
chr2	173339079	.	G	C	1277.98	PASS	AC=1;AF=0.5;AN=2;DP=64;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.444;QD=19.97;ReadPosRankSum=1.347;SOR=0.871;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:15,49:64:99:1306,0,394:6,9,18,31
chr2	173339808	.	G	A	734.35	PASS	AC=1;AF=0.542;AN=2;DP=1235;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant12-variant14-variant16-variant17-variant18-variant21-variant24-variant25-variant33-variant34-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:603,0,814:9,20,8,15
chr2	173344474	.	A	G	884.49	PASS	AC=1;AF=0.519;AN=2;DP=1743;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant14-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:26,29:55:99:724,0,582:10,16,16,13
chr2	173349882	.	A	G	952.47	PASS	AC=1;AF=0.5;AN=2;DP=104;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-1.765;QD=9.16;ReadPosRankSum=-1.01;SOR=0.657;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:59,45:104:99:981,0,1515:27,32,21,24
chr2	173352259	.	T	C	1320.43	PASS	AC=1;AF=0.5;AN=2;DP=141;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=1.284;QD=9.36;ReadPosRankSum=1.058;SOR=0.747;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:89,52:141:99:1349,0,2236:44,45,25,27
chr2	173352446	.	GT	G	1256.77	PASS	AC=1;AF=0.5;AN=2;DP=102;FS=6.477;FractionInformativeReads=0.961;MQ=60;MQRankSum=-0.754;QD=12.32;ReadPosRankSum=-0.057;SOR=0.31;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:47,51:98:99:1294,0,1157:17,30,25,26
chr2	173353060	.	G	A	287.48	PASS	AC=2;AF=0.54;AN=2;DP=451;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant5-variant7-variant14-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,19:19:57:834,57,0:0,0,0,19
chr2	173355958	.	G	A	2381.21	PASS	AC=1;AF=0.5;AN=2;DP=218;FS=0.496;FractionInformativeReads=1;MQ=60;MQRankSum=-2.945;QD=10.92;ReadPosRankSum=-1.645;SOR=0.736;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:124,94:218:99:2409,0,3168:62,62,48,46
chr2	173355990	.	G	A	2204.72	PASS	AC=1;AF=0.5;AN=2;DP=213;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=2.517;QD=10.35;ReadPosRankSum=1.457;SOR=0.664;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:124,89:213:99:2233,0,3326:59,65,43,46
chr2	173366607	.	G	A	802.37	PASS	AC=1;AF=0.5;AN=2;DP=73;FS=3.169;FractionInformativeReads=1;MQ=60;MQRankSum=-1.967;QD=10.99;ReadPosRankSum=-0.848;SOR=0.957;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:40,33:73:99:831,0,1052:21,19,14,19
chr2	173369231	.	A	G	290.77	PASS	AC=2;AF=0.537;AN=2;DP=1232;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant10-variant14-variant17-variant18-variant19-variant21-variant22-variant24-variant25-variant27-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,44:44:99:1334,132,0:0,0,27,17
chr2	173371052	.	C	CAGCCAAAGAT	231.49	PASS	AC=1;AF=0.5;AN=2;DP=20;FS=2.447;FractionInformativeReads=0.75;MQ=60;MQRankSum=0.637;QD=11.57;ReadPosRankSum=-1.562;SOR=0.223;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:8,7:15:99:269,0,827:1,7,2,5
chr2	173420746	.	G	A	886.08	PASS	AC=1;AF=0.583;AN=2;DP=416;MQ=60;set=variant-variant3-variant4-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,27:61:99:669,0,934:22,12,16,11
chr2	173427053	.	T	G	1438.55	PASS	AC=1;AF=0.583;AN=2;DP=556;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:44,48:92:99:1180,0,1187:27,17,24,24
chr2	173428874	.	C	T	1593.84	PASS	AC=2;AF=0.577;AN=2;DP=1934;MQ=60;set=variant-variant3-variant4-variant10-variant19-variant22-variant29-variant33-variant34-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,104:104:99:3156,311,0:0,0,43,61
chr2	173435374	.	A	G	351.07	PASS	AC=2;AF=0.6;AN=2;DP=258;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant22-variant29-variant33-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,20:20:60:687,60,0:0,0,15,5
chr2	173450886	.	CAA	CAAA,CA,C	65.24	PASS	AC=0,1,0;AF=0.045,0.432,0.023;AN=2;DP=354;set=variant-variant2-variant3-variant4-variant5-variant6-variant9-variant11-variant13-variant14-variant15-variant19-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant38-variant39-variant41	GT:DP:GQ:SB	0/2:18:99:7,1,8,2
chr2	173460640	.	T	C	2039.64	PASS	AC=1;AF=0.583;AN=2;DP=968;MQ=60;set=variant-variant3-variant4-variant29-variant33-variant41	GT:AD:DP:GQ:PL:SB	0/1:86,75:161:99:1986,0,2192:46,40,34,41
chr2	173461004	.	G	GT	2773.3	PASS	AC=2;AF=0.583;AN=2;DP=3483;MQ=60;set=variant-variant3-variant4-variant10-variant15-variant22-variant29-variant33-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:9,197:206:99:4660,382,0:5,4,88,109
chr2	173462230	.	G	T	112.72	PASS	AC=2;AF=0.6;AN=2;DP=126;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant4-variant22-variant29-variant33-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:548,48,0:0,0,12,4
chr2	173462718	.	G	A	620.21	PASS	AC=1;AF=0.5;AN=2;DP=32;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=-0.436;QD=19.38;ReadPosRankSum=-0.079;SOR=0.665;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,21:32:99:648,0,273:4,7,8,13
chr2	173463786	.	A	G	1725.69	PASS	AC=2;AF=0.583;AN=2;DP=1713;MQ=60;set=variant-variant3-variant4-variant10-variant22-variant29-variant33-variant34-variant35-variant36-variant39-variant41	GT:AD:DP:GQ:PL:SB	1/1:0,129:129:99:4330,387,0:0,0,47,82
chr2	173463884	.	TAA	TAAAA,TA,TAAA,T	153.38	PASS	AC=0,1,0,0;AF=0.038,0.442,0.038,0.058;AN=2;DP=830;set=variant-variant2-variant3-variant5-variant7-variant8-variant9-variant10-variant12-variant16-variant19-variant20-variant22-filterInvariant25-filterInvariant27-variant28-variant31-variant33-variant35-variant37-variant38-variant40-variant41-variant42-filterInvariant43-variant44	GT:DP:GQ:SB	0/2:30:30:1,10,4,15
chr2	173600783	.	C	CG	1987.75	PASS	AC=2;AF=1;AN=2;DP=3649;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,55:55:99:2051,165,0:0,0,24,31
chr2	173659913	.	T	C	843.9	PASS	AC=2;AF=1;AN=2;DP=812;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,13:13:39:479,39,0:0,0,3,10
chr2	173686663	.	G	T	1276.41	PASS	AC=2;AF=0.712;AN=2;DP=3125;MQ=60;set=variant-variant4-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,76:76:99:2510,226,0:0,0,37,39
chr2	173686798	.	A	G	1259.07	PASS	AC=2;AF=0.719;AN=2;DP=3191;MQ=60;set=variant-variant4-variant9-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,82:82:99:2675,246,0:0,0,38,44
chr2	173782975	.	CTTTT	CTT,CTTT,CT,C	122.78	PASS	AC=0,2,0,0;AF=0.203,0.392,0.054,0.014;AN=2;DP=1359;set=variant-variant3-variant4-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant30-variant31-variant32-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant43	GT:DP:GQ:SB	2/2:15:22:1,0,4,10
chr2	173793096	.	GA	G	109.62	PASS	AC=2;AF=0.779;AN=2;DP=393;MQ=60;set=variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant36-variant38-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,5:5:15:225,15,0:0,0,0,5
chr2	173861340	.	G	A	873.57	PASS	AC=1;AF=0.6;AN=2;DP=1683;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant11-variant13-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:34,49:83:99:1103,0,893:12,22,23,26
chr2	173861450	.	A	T	158.64	PASS	AC=1;AF=0.6;AN=2;DP=453;MQ=60;set=variant2-variant4-variant7-variant8-variant10-variant11-variant13-variant17-variant18-variant19-variant22-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant40-variant41	GT:AD:DP:GQ:PL:SB	0/1:14,14:28:99:381,0,375:5,9,4,10
chr2	173861456	.	G	C	687.75	PASS	AC=2;AF=1;AN=2;DP=721;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,26:26:78:1040,78,0:0,0,8,18
chr2	173879028	.	G	A	221.16	PASS	AC=1;AF=0.5;AN=2;DP=18;FS=3.039;FractionInformativeReads=1;MQ=60;MQRankSum=-1.359;QD=12.29;ReadPosRankSum=-0.996;SOR=1.911;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:11,7:18:99:249,0,361:9,2,7,0
chr2	173879534	.	C	A	46.49	PASS	AC=2;AF=0.75;AN=2;DP=536;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,12:12:36:507,36,0:0,0,0,12
chr2	173885187	.	G	A	1112.97	PASS	AC=1;AF=0.5;AN=2;DP=53;FS=5.28;FractionInformativeReads=1;MQ=60;MQRankSum=1.305;QD=21;ReadPosRankSum=-0.219;SOR=0.192;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:17,36:53:99:1141,0,471:15,2,26,10
chr2	173885204	.	G	A	1046.17	PASS	AC=1;AF=0.5;AN=2;DP=59;FS=1.182;FractionInformativeReads=1;MQ=60;MQRankSum=-0.94;QD=17.73;ReadPosRankSum=2.386;SOR=0.471;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:23,36:59:99:1074,0,701:18,5,26,10
chr2	173913258	.	G	A	196.39	PASS	AC=1;AF=0.625;AN=2;DP=91;FractionInformativeReads=1;MQ=60;set=variant13-variant24-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:15,6:21:99:153,0,352:8,7,4,2
chr2	173917425	.	G	A	2340.7	PASS	AC=2;AF=1;AN=2;DP=3525;FS=0;FractionInformativeReads=1;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,80:80:99:2624,240,0:0,0,38,42
chr2	173917659	.	G	A	460.11	PASS	AC=1;AF=0.588;AN=2;DP=461;set=variant3-variant5-variant7-variant8-variant9-variant11-variant13-variant16-variant21-variant22-variant24-variant28-variant29-variant32-variant37-variant41-variant44	GT:AD:DP:GQ:PL:SB	0/1:17,9:26:99:238,0,428:6,11,3,6
chr2	173917714	.	T	G	230.21	PASS	AC=1;AF=0.583;AN=2;DP=72;FS=0;MQ=60;set=variant3-variant13-variant22-variant24-variant28-variant41	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:62:120,0,62:0,2,0,3
chr2	173940437	.	CG	C	1009.78	PASS	AC=1;AF=0.688;AN=2;DP=2431;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:29,38:67:99:1219,0,874:17,12,23,15
chr2	173940620	.	A	G	5507.62	PASS	AC=2;AF=1;AN=2;DP=7537;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,152:152:99:4474,454,0:0,0,63,89
chr2	173940741	.	G	A	392.65	PASS	AC=1;AF=0.621;AN=2;DP=762;MQ=60;set=variant-variant3-variant5-variant6-variant8-variant9-variant10-variant11-variant13-variant15-variant16-variant17-variant18-variant20-variant24-variant25-variant26-variant27-variant30-variant33-variant34-variant35-variant37-variant38-variant39-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:11,11:22:99:340,0,415:3,8,2,9
chr2	173940750	.	C	T	368.56	PASS	AC=1;AF=0.703;AN=2;DP=707;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant14-variant16-variant17-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant28-variant29-variant31-variant32-variant34-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,9:19:99:186,0,394:2,8,3,6
chr2	173956034	.	T	C	417.34	PASS	AC=1;AF=0.5;AN=2;DP=46;FS=1.32;FractionInformativeReads=1;MQ=60;MQRankSum=-1.363;QD=9.07;ReadPosRankSum=-0.654;SOR=0.412;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:26,20:46:99:446,0,735:6,20,6,14
chr2	174055646	.	T	C	777.9	PASS	AC=1;AF=0.611;AN=2;DP=281;FractionInformativeReads=1;MQ=60;set=variant5-variant13-variant15-variant24-variant26-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,3:12:58:58,0,264:6,3,2,1
chr2	174055731	.	A	G	760.32	PASS	AC=1;AF=0.594;AN=2;DP=3020;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:28,30:58:99:758,0,683:19,9,18,12
chr2	174068513	.	G	C	2949.14	PASS	AC=2;AF=1;AN=2;DP=4115;FS=0;MQ=60;MQRankSum=-0.956;ReadPosRankSum=0.358;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,79:79:99:2447,237,0:0,0,46,33
chr2	174074353	.	T	G	313.04	PASS	AC=1;AF=0.692;AN=2;DP=503;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:6,9:15:99:285,0,221:6,0,8,1
chr2	174074375	.	T	C	208.59	PASS	AC=1;AF=0.594;AN=2;DP=597;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant12-variant14-variant16-variant17-variant18-variant19-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant36-variant37-variant39-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:10,10:20:99:336,0,309:8,2,9,1
chr2	174074407	.	A	G	1115.87	PASS	AC=1;AF=0.738;AN=2;DP=1356;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:21,12:33:99:351,0,549:15,6,10,2
chr2	174086940	.	C	CA	1297.44	PASS	AC=1;AF=0.662;AN=2;DP=2775;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,38:61:99:927,0,509:15,8,25,13
chr2	174087747	.	A	C	1218.17	PASS	AC=1;AF=0.6;AN=2;DP=2964;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:41,46:87:99:1120,0,1062:20,21,21,25
chr2	174089112	.	T	C	4797.27	PASS	AC=2;AF=1;AN=2;DP=6348;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,136:136:99:4194,406,0:0,0,84,52
chr2	174089705	.	G	GAGA	4304.8	PASS	AC=1;AF=0.917;AN=2;DP=5323;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:61,57:118:99:2244,0,3001:29,32,27,30
chr2	174089862	.	TC	T	1306.22	PASS	AC=2;AF=1;AN=2;DP=2077;FS=0;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,52:52:99:1854,157,0:0,0,24,28
chr2	174090321	.	C	CA	228.88	PASS	AC=1;AF=0.514;AN=2;DP=2611;set=variant-filterInvariant2-variant3-variant4-variant7-filterInvariant8-variant9-variant10-variant12-variant13-variant14-variant16-variant17-variant19-filterInvariant20-variant21-filterInvariant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-filterInvariant37-variant39-variant41-variant42-variant43-filterInvariant44	GT:AD:DP:GQ:PL:SB	0/1:8,38:46:16:770,0,16:6,2,31,7
chr2	174090542	.	T	C	2663.03	PASS	AC=1;AF=0.782;AN=2;DP=6234;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:59,77:136:99:1797,0,1677:20,39,33,44
chr2	174090636	.	T	TA	1288.48	PASS	AC=1;AF=0.586;AN=2;DP=3984;set=variant-variant2-variant3-variant4-variant6-variant7-variant8-variant9-variant10-variant12-variant14-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:50,28:78:99:502,0,1882:25,25,12,16
chr2	174090661	.	A	T	1482.91	PASS	AC=1;AF=0.5;AN=2;DP=125;FS=2.285;FractionInformativeReads=1;MQ=60;MQRankSum=0.126;QD=11.86;ReadPosRankSum=3.044;SOR=0.495;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:62,63:125:99:1511,0,1976:36,26,33,30
chr2	174091088	.	T	C	2615.28	PASS	AC=2;AF=0.857;AN=2;DP=7781;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:1,170:171:99:5258,501,0:1,0,104,66
chr2	174091461	.	C	G	189.17	PASS	AC=1;AF=0.5;AN=2;DP=19;FS=0;FractionInformativeReads=1;MQ=60;MQRankSum=0.127;QD=9.96;ReadPosRankSum=-1.056;SOR=0.941;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:12,7:19:99:217,0,320:6,6,3,4
chr2	174091964	.	A	C	1817.31	PASS	AC=1;AF=0.917;AN=2;DP=1503;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:14,18:32:99:692,0,530:0,14,0,18
chr2	174094129	.	G	C	872.8	PASS	AC=2;AF=0.989;AN=2;DP=808;FractionInformativeReads=1;MQ=60;MQRankSum=0.696;ReadPosRankSum=-0.271;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,18:18:54:648,54,0:0,0,13,5
chr2	174094145	.	T	C	437.96	PASS	AC=1;AF=0.594;AN=2;DP=453;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant11-variant13-variant15-variant18-variant20-variant24-variant26-variant33-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:9,14:23:99:385,0,252:7,2,9,5
chr2	174094345	.	A	T	847.99	PASS	AC=1;AF=0.588;AN=2;DP=1290;MQ=60;set=variant-variant3-variant5-variant11-variant13-variant15-variant18-variant20-variant24-variant26-variant28-variant33-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:37,31:68:99:708,0,976:17,20,12,19
chr2	174094500	.	G	A	691.41	PASS	AC=1;AF=0.594;AN=2;DP=741;FractionInformativeReads=1;MQ=60;set=variant-variant3-variant5-variant11-variant13-variant15-variant18-variant20-variant24-variant26-variant33-variant38-variant40-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:21,22:43:99:528,0,601:7,14,10,12
chr2	174123399	.	A	G	581.84	PASS	AC=1;AF=0.878;AN=2;DP=1054;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:11,20:31:99:576,0,344:10,1,15,5
chr2	174131511	.	TA	TAA,TAAA,TAAAA,T	754.7	PASS	AC=1,0,0,0;AF=0.274,0.19,0.25,0.036;AN=2;DP=3608;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant39-variant40-variant41-variant42-variant44	GT:DP:GQ:SB	0/1:78:99:14,9,42,13
chr2	174223675	.	C	T	201.16	PASS	AC=1;AF=0.65;AN=2;DP=339;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant11-variant13-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant26-variant27-variant29-variant31-variant33-variant35-variant36-variant37-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	0/1:3,5:8:67:120,0,67:1,2,2,3
chr2	174224355	.	G	A	493.83	PASS	AC=2;AF=0.929;AN=2;DP=429;FS=0;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant7-variant8-variant9-variant10-variant11-variant12-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,4:4:12:141,12,0:0,0,0,4
chr2	174228418	.	C	T	596.03	PASS	AC=2;AF=0.907;AN=2;DP=563;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	1/1:0,7:7:21:266,21,0:0,0,5,2
chr2	174228744	.	T	C	134.95	PASS	AC=2;AF=0.706;AN=2;DP=573;FractionInformativeReads=1;MQ=60;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant11-variant12-variant13-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant27-variant29-variant31-variant32-variant33-variant34-variant35-variant36-variant38-variant39-variant41-variant42-variant43	GT:AD:DP:GQ:PL:SB	1/1:0,16:16:48:579,48,0:0,0,5,11
chr2	174230153	.	C	G	1909.49	PASS	AC=2;AF=0.898;AN=2;DP=2571;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,45:45:99:1369,135,0:0,0,30,15
chr2	174230983	.	G	GT	253.34	PASS	AC=2;AF=0.898;AN=2;DP=964;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,14:14:42:406,42,0:0,0,9,5
chr2	174232622	.	C	T	2754.96	PASS	AC=2;AF=0.898;AN=2;DP=4349;MQ=60;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,83:83:99:2557,247,0:0,0,46,37
chr2	174772660	.	G	A	4983.07	PASS	AC=1;AF=0.525;AN=2;DP=7907;MQ=60;set=variant6-variant7-variant8-variant9-variant13-variant14-variant16-variant19-variant21-variant22-variant24-variant27-variant29-variant30-variant38-variant39-variant40-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:236,185:421:99:4405,0,5884:139,97,102,83
chr2	174829412	.	C	CCGGCGG	117.48	PASS	AC=1;AF=0.633;AN=2;DP=107;set=variant6-variant7-variant8-variant14-variant16-variant19-variant21-variant22-variant27-variant29-variant30-variant38-variant41-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,2:4:78:78,0,141:1,1,1,1
chr2	174830266	.	T	G	1328.22	PASS	AC=1;AF=0.5;AN=2;DP=1398;MQ=60;set=variant6-variant9-variant13-variant14-variant16-variant21-variant29-variant30-variant38-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:33,93:126:99:2261,0,552:15,18,41,52
chr2	174937145	.	A	G	1349.13	PASS	AC=1;AF=0.5;AN=2;DP=247;FractionInformativeReads=1;MQ=60;set=variant39-variant41	GT:AD:DP:GQ:PL:SB	0/1:63,58:121:99:1445,0,1545:41,22,38,20
chr2	174937278	.	G	A	3992	PASS	AC=1;AF=0.758;AN=2;DP=9348;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:168,113:281:99:2573,0,4164:87,81,57,56
chr2	174937467	.	T	C	3522.28	PASS	AC=1;AF=0.758;AN=2;DP=6232;MQ=60;set=variant-variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant17-variant20-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:109,77:186:99:2021,0,2931:55,54,36,41
chr2	174939983	.	G	GA	462.13	PASS	AC=1;AF=0.65;AN=2;DP=435;MQ=60;set=variant5-variant9-variant10-variant11-variant13-variant16-variant23-variant25-variant27-variant28-variant30-variant33-variant34-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:3,10:13:99:411,0,127:3,0,5,5
chr2	174939986	.	G	C	426.01	PASS	AC=1;AF=0.5;AN=2;DP=16;FS=6.41;FractionInformativeReads=0.938;MQ=60;MQRankSum=0.072;QD=26.63;ReadPosRankSum=-1.371;SOR=0.061;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:3,12:15:99:454,0,121:3,0,6,6
chr2	174943876	.	C	T	224.86	PASS	AC=1;AF=0.6;AN=2;DP=317;FractionInformativeReads=1;MQ=60;set=variant-variant8-variant9-variant10-variant14-variant16-variant17-variant20-variant32-variant33-variant36-variant37-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:294,0,260:5,7,6,7
chr2	174987794	.	A	G	587.52	PASS	AC=1;AF=0.667;AN=2;DP=1600;MQ=60;set=variant5-variant8-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant20-variant23-variant25-variant27-variant28-variant30-variant32-variant33-variant34-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:30,33:63:99:789,0,696:20,10,19,14
chr2	175112764	.	C	T	705.96	PASS	AC=1;AF=0.643;AN=2;DP=1340;MQ=60;set=variant5-variant9-variant10-variant11-variant13-variant14-variant15-variant16-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant30-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:23,34:57:99:927,0,546:12,11,19,15
chr2	175200014	.	G	A	1500.19	PASS	AC=1;AF=0.65;AN=2;DP=996;MQ=60;set=variant2-variant4-variant6-variant8-variant14-variant15-variant17-variant19-variant21-variant22-variant24-variant25-variant26-variant30-variant33-variant35-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:29,23:52:99:548,0,888:8,21,9,14
chr2	175200903	.	G	C	8262.27	PASS	AC=1;AF=0.656;AN=2;DP=4468;MQ=60;set=variant2-variant4-variant6-variant8-variant14-variant15-variant19-variant21-variant25-variant26-variant30-variant33-variant36-variant40-variant41-variant43	GT:AD:DP:GQ:PL:SB	0/1:123,138:261:99:3534,0,3256:57,66,61,77
chr2	175202184	.	A	AGCG	744.86	PASS	AC=1;AF=0.5;AN=2;DP=146;FS=1.932;FractionInformativeReads=0.61;MQ=60;MQRankSum=1.647;QD=5.1;ReadPosRankSum=0.6;SOR=0.453;set=variant41	GT:AD:DP:GQ:PL:SB	0/1:63,26:89:99:782,0,3250:27,36,13,13
chr2	175202199	.	A	G	1887.93	PASS	AC=1;AF=0.5;AN=2;DP=962;set=variant12-variant13-variant15-variant24-variant36-variant41	GT:AD:DP:GQ:PL:SB	0/1:73,54:127:99:1762,0,1901:32,41,25,29
chr2	175212863	.	A	T	506.14	PASS	AC=1;AF=0.5;AN=2;DP=90;FractionInformativeReads=1;MQ=60;set=variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:9,17:26:99:437,0,271:5,4,11,6
chr2	175213041	.	T	C	4059.44	PASS	AC=1;AF=0.72;AN=2;DP=4184;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant14-variant15-variant16-variant17-variant18-variant19-variant20-variant21-variant22-variant23-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant36-variant37-variant39-variant40-variant41-variant42-variant43-variant44	GT:AD:DP:GQ:PL:SB	0/1:51,61:112:99:1661,0,1502:33,18,41,20
chr2	175213645	.	G	C	1267.43	PASS	AC=1;AF=0.5;AN=2;DP=290;FractionInformativeReads=1;MQ=60;set=variant39-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:34,61:95:99:1810,0,763:13,21,27,34
chr2	175215287	.	G	A	104.12	PASS	AC=1;AF=0.545;AN=2;DP=301;FractionInformativeReads=1;MQ=60;set=variant5-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:4,8:12:96:202,0,96:2,2,5,3
chr2	175244756	.	T	C	592.3	PASS	AC=2;AF=0.989;AN=2;DP=902;FS=0;MQRankSum=0.696;ReadPosRankSum=-0.696;set=Intersection	GT:AD:DP:GQ:PL:SB	1/1:0,24:24:72:656,72,0:0,0,12,12
chr2	175262970	.	C	T	240.37	PASS	AC=1;AF=0.563;AN=2;DP=791;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:18,13:31:99:282,0,463:12,6,8,5
chr2	175264627	.	CTTTTT	CTTTTTTT,CTTT,CTTTT,CT,CTTTTTT,C,CTTTTTTTT	222.23	PASS	AC=0,0,1,1,0,0,0;AF=0.071,0.036,0.202,0.31,0.036,0.012,0.012;AN=2;DP=2472;set=variant-variant2-variant3-variant4-variant5-variant6-variant7-variant8-variant9-variant10-variant11-variant12-variant13-variant15-variant16-variant17-variant19-variant20-variant21-variant22-variant23-variant24-variant25-variant26-variant27-variant28-variant29-variant30-variant31-variant32-variant33-variant34-variant35-variant36-variant37-variant38-variant39-variant40-variant41-variant42-variant43-variant44	GT:DP:GQ:SB	4/3:66:99:4,1,45,16
chr2	175265614	.	G	A	52.74	PASS	AC=1;AF=0.625;AN=2;DP=69;FS=0;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant9-variant11-variant12-variant13-variant16-variant23-variant24-variant25-variant35-variant37-variant38-variant40-variant41-variant42	GT:AD:DP:GQ:PL:SB	0/1:1,2:3:37:81,0,37:1,0,2,0
chr2	175265666	.	A	G	206.92	PASS	AC=1;AF=0.565;AN=2;DP=243;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant23-variant24-variant25-variant27-variant28-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:2,3:5:76:120,0,76:2,0,3,0
chr2	175268763	.	A	G	512.23	PASS	AC=1;AF=0.563;AN=2;DP=634;FractionInformativeReads=1;MQ=60;set=variant5-variant8-variant9-variant10-variant11-variant12-variant13-variant16-variant17-variant23-variant24-variant25-variant27-variant28-variant30-variant33-variant35-variant36-variant37-variant38-variant40-variant41-variant42-variant44	GT:AD:DP:GQ:PL:SB	0/1:12,13:25:99:447,0,413:11,1,13,0
chr2	175287778	.	G	A	497.55	PASS	AC=1;AF=0